Query 031719
Match_columns 154
No_of_seqs 113 out of 140
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 06:33:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031719.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031719hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dzla_ b.121.6.1 (A:) Papillo 13.7 34 0.0024 28.8 1.7 34 69-103 411-451 (455)
2 d1rutx4 g.39.1.3 (X:114-146) L 12.3 19 0.0014 19.9 -0.2 9 65-73 15-23 (33)
3 d2dloa2 g.39.1.3 (A:43-75) Thy 7.4 49 0.0036 18.3 0.3 9 68-76 9-17 (33)
4 d1xkpc1 d.198.1.1 (C:2-127) Ch 6.9 62 0.0045 22.7 0.7 11 71-81 14-25 (126)
5 d3cx5i1 f.23.14.1 (I:4-58) Sub 6.8 26 0.0019 21.4 -1.3 14 84-97 35-48 (55)
6 d1ppjw_ f.23.14.1 (W:) Subunit 6.3 28 0.0021 21.7 -1.3 13 84-96 41-53 (62)
7 d1nbwb_ c.51.3.2 (B:) Glycerol 6.1 1.2E+02 0.0084 20.6 1.8 19 51-74 92-110 (113)
8 d2b3na1 d.38.1.4 (A:6-159) Hyp 6.1 34 0.0025 23.2 -1.2 36 85-123 27-62 (154)
9 d3b45a1 f.51.1.1 (A:91-270) Gl 5.0 1.1E+02 0.0082 20.4 1.2 24 111-134 48-71 (180)
10 d1ppjj_ f.23.14.1 (J:) Subunit 5.0 37 0.0027 18.8 -1.2 12 85-96 13-24 (33)
No 1
>d1dzla_ b.121.6.1 (A:) Papillomavirus L1 protein {Human papillomavirus type 16 [TaxId: 333760]}
Probab=13.71 E-value=34 Score=28.76 Aligned_cols=34 Identities=35% Similarity=0.551 Sum_probs=22.6
Q ss_pred cCcCCCCCCcccCCCcceeeecCCC-------CCCccceeee
Q 031719 69 KGTPFADDQGIYNGLTWWEQIDNGK-------QLTRNRKFLT 103 (154)
Q Consensus 69 KGtPf~~~qG~y~~LT~WEQID~g~-------q~T~trKFL~ 103 (154)
+..|=...+.-|..++||| +|=.+ ||.=.||||.
T Consensus 411 ~~~pp~ek~DPy~~~~FW~-VDL~er~S~dLdQfpLGRkFL~ 451 (455)
T d1dzla_ 411 KHTPPAPKEDPLKKYTFWE-VNLKEKFSADLDQFPLGRKFLL 451 (455)
T ss_dssp CCCCCCCCCCTTTTSCCEE-EECTTCCBSCGGGSHHHHHHHH
T ss_pred CCCCCCCCCCCccCCceee-eccchhcccccccCchhhhhhh
Confidence 3444445567899999998 44444 5555788874
No 2
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.32 E-value=19 Score=19.94 Aligned_cols=9 Identities=44% Similarity=1.058 Sum_probs=8.5
Q ss_pred eeeecCcCC
Q 031719 65 FHWKKGTPF 73 (154)
Q Consensus 65 fHwvKGtPf 73 (154)
||++.|+-|
T Consensus 15 FHyvNG~lf 23 (33)
T d1rutx4 15 FHYINGSLF 23 (33)
T ss_dssp EEEETTEEE
T ss_pred eEEecCEEE
Confidence 899999999
No 3
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.43 E-value=49 Score=18.25 Aligned_cols=9 Identities=44% Similarity=0.792 Sum_probs=6.4
Q ss_pred ecCcCCCCC
Q 031719 68 KKGTPFADD 76 (154)
Q Consensus 68 vKGtPf~~~ 76 (154)
..|.||+-|
T Consensus 9 LDGvPFtvD 17 (33)
T d2dloa2 9 LDGIPFTVD 17 (33)
T ss_dssp CTTSCEECC
T ss_pred cCCCcEEEc
Confidence 479999543
No 4
>d1xkpc1 d.198.1.1 (C:2-127) Chaperone protein YscB {Yersinia pestis [TaxId: 632]}
Probab=6.92 E-value=62 Score=22.69 Aligned_cols=11 Identities=64% Similarity=1.295 Sum_probs=9.5
Q ss_pred cCC-CCCCcccC
Q 031719 71 TPF-ADDQGIYN 81 (154)
Q Consensus 71 tPf-~~~qG~y~ 81 (154)
-|| ++.||+|+
T Consensus 14 gpFVad~qG~Y~ 25 (126)
T d1xkpc1 14 KPFVADKQGVYR 25 (126)
T ss_dssp CCCCCCTTSCEE
T ss_pred CCcccCCCCceE
Confidence 589 88999996
No 5
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.77 E-value=26 Score=21.38 Aligned_cols=14 Identities=29% Similarity=0.767 Sum_probs=10.7
Q ss_pred cceeeecCCCCCCc
Q 031719 84 TWWEQIDNGKQLTR 97 (154)
Q Consensus 84 T~WEQID~g~q~T~ 97 (154)
..||+++.|.|+.-
T Consensus 35 ~~we~~NkGKlWkD 48 (55)
T d3cx5i1 35 SWYENHNKGKLWKD 48 (55)
T ss_dssp HHHHHHTTTTSHHH
T ss_pred HHHHhccCcccHHH
Confidence 47888888888743
No 6
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.35 E-value=28 Score=21.69 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=10.5
Q ss_pred cceeeecCCCCCC
Q 031719 84 TWWEQIDNGKQLT 96 (154)
Q Consensus 84 T~WEQID~g~q~T 96 (154)
..||+++.|.|+.
T Consensus 41 ~iwe~~NkGKlWK 53 (62)
T d1ppjw_ 41 AIYEHINEGKLWK 53 (62)
T ss_dssp HHHHHHTTTTSHH
T ss_pred HHHHhcccccchH
Confidence 4789999988875
No 7
>d1nbwb_ c.51.3.2 (B:) Glycerol dehydratase reactivase, beta subunit {Klebsiella pneumoniae [TaxId: 573]}
Probab=6.11 E-value=1.2e+02 Score=20.57 Aligned_cols=19 Identities=21% Similarity=0.076 Sum_probs=15.4
Q ss_pred hhhHHHHHhhhheeeeeecCcCCC
Q 031719 51 TLVHLSHFFVTYHFFHWKKGTPFA 74 (154)
Q Consensus 51 Tltn~~h~~~ty~~fHwvKGtPf~ 74 (154)
++-++..|+.=| +||.||.
T Consensus 92 ~~R~iG~NAARl-----vKg~Pf~ 110 (113)
T d1nbwb_ 92 QLRTLGANAGQL-----VKVLPLS 110 (113)
T ss_dssp HHHHHHHHHHHH-----HHTCCCC
T ss_pred HHHHHHHHHHHH-----HhcCCCc
Confidence 567888888876 7999994
No 8
>d2b3na1 d.38.1.4 (A:6-159) Hypothetical protein AF1124 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.06 E-value=34 Score=23.20 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=27.0
Q ss_pred ceeeecCCCCCCccceeeehhhHHHHHHhhcccCCCCCc
Q 031719 85 WWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQNPM 123 (154)
Q Consensus 85 ~WEQID~g~q~T~trKFL~~vPIvLFllashyt~yd~~~ 123 (154)
++|++..|+.++..|+ ++---+..|- ....+++|.|
T Consensus 27 ~~~el~iG~~~~~~rt-iT~~di~~FA--~~sgD~nPiH 62 (154)
T d2b3na1 27 FEGELKEGYRFEYEKK-LCEIDVAMFG--LISGDLNPVH 62 (154)
T ss_dssp CCSCCCTTCEEEEEEE-CCHHHHHHHH--HHHCCCCHHH
T ss_pred cccccCCCCEEEEEEE-EeHHHHHHHH--HhhCCCCCCE
Confidence 7788999999987776 7888888884 4445666555
No 9
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=5.04 E-value=1.1e+02 Score=20.42 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=19.7
Q ss_pred HHhhcccCCCCCchhhhHHhhhhh
Q 031719 111 LIASHTTDYQNPMLFFNTLAVFVL 134 (154)
Q Consensus 111 llashyt~yd~~~f~iN~~~l~~v 134 (154)
++++.+.|-|..|.+.|..++...
T Consensus 48 l~T~~f~H~~~~Hl~~N~~~l~~~ 71 (180)
T d3b45a1 48 YFTHALMHFSLMHILFNLLWWWYL 71 (180)
T ss_dssp GTGGGGCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 567788899999999999877543
No 10
>d1ppjj_ f.23.14.1 (J:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.02 E-value=37 Score=18.81 Aligned_cols=12 Identities=33% Similarity=0.606 Sum_probs=9.7
Q ss_pred ceeeecCCCCCC
Q 031719 85 WWEQIDNGKQLT 96 (154)
Q Consensus 85 ~WEQID~g~q~T 96 (154)
.||++..|.|+-
T Consensus 13 i~d~~NkGklWK 24 (33)
T d1ppjj_ 13 IYEHINEGKLWK 24 (33)
T ss_dssp HHHHHTTTTSHH
T ss_pred HHHHhcccchHH
Confidence 688999998864
Done!