BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>031720
MKIQTLVKDRKEDGLKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIF
EKVSTFIVTEEKAAEPATAAAGEETKPEQETTSSSTAAVTEKDDVVVEEEKKEEAPAGPE
KTEPAEAAAAPAPTEPLPAAAKEDQPAAAEPPKP

High Scoring Gene Products

Symbol, full name Information P value
PCAP1
AT4G20260
protein from Arabidopsis thaliana 1.4e-18

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031720
        (154 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2120402 - symbol:PCAP1 "AT4G20260" species:370...   224  1.4e-18   1


>TAIR|locus:2120402 [details] [associations]
            symbol:PCAP1 "AT4G20260" species:3702 "Arabidopsis
            thaliana" [GO:0005886 "plasma membrane" evidence=ISS;IDA]
            [GO:0009409 "response to cold" evidence=IEP] [GO:0009507
            "chloroplast" evidence=IDA] [GO:0005773 "vacuole" evidence=IDA]
            [GO:0042742 "defense response to bacterium" evidence=IEP]
            [GO:0005509 "calcium ion binding" evidence=IDA] [GO:0009414
            "response to water deprivation" evidence=IEP] [GO:0010350 "cellular
            response to magnesium starvation" evidence=IEP] [GO:0035865
            "cellular response to potassium ion" evidence=IEP] [GO:0046658
            "anchored to plasma membrane" evidence=IDA] [GO:0071219 "cellular
            response to molecule of bacterial origin" evidence=IEP] [GO:0071280
            "cellular response to copper ion" evidence=IEP] [GO:0071281
            "cellular response to iron ion" evidence=IEP] [GO:0071286 "cellular
            response to magnesium ion" evidence=IEP] [GO:0071325 "cellular
            response to mannitol stimulus" evidence=IEP] [GO:0071472 "cellular
            response to salt stress" evidence=IEP] [GO:0072709 "cellular
            response to sorbitol" evidence=IEP] [GO:0005516 "calmodulin
            binding" evidence=IDA] [GO:0005546
            "phosphatidylinositol-4,5-bisphosphate binding" evidence=IDA]
            [GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding"
            evidence=IDA] [GO:0006499 "N-terminal protein myristoylation"
            evidence=IMP] [GO:0043325 "phosphatidylinositol-3,4-bisphosphate
            binding" evidence=IDA] [GO:0080025
            "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA]
            [GO:0005507 "copper ion binding" evidence=IDA] [GO:0005881
            "cytoplasmic microtubule" evidence=IDA] [GO:0008017 "microtubule
            binding" evidence=IDA] [GO:0031115 "negative regulation of
            microtubule polymerization" evidence=IDA] [GO:0031117 "positive
            regulation of microtubule depolymerization" evidence=IDA]
            [GO:0043622 "cortical microtubule organization" evidence=IMP;IDA]
            [GO:0051511 "negative regulation of unidimensional cell growth"
            evidence=IMP] [GO:0051592 "response to calcium ion" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0009506
            "plasmodesma" evidence=IDA] [GO:0075733 "intracellular transport of
            viral material" evidence=IMP] [GO:0006816 "calcium ion transport"
            evidence=RCA] [GO:0006970 "response to osmotic stress"
            evidence=RCA] [GO:0007030 "Golgi organization" evidence=RCA]
            [GO:0009651 "response to salt stress" evidence=RCA] [GO:0046686
            "response to cadmium ion" evidence=RCA] [GO:0048767 "root hair
            elongation" evidence=RCA] Pfam:PF05558 GO:GO:0009506 GO:GO:0019048
            EMBL:CP002687 GO:GO:0071281 GO:GO:0009414 GO:GO:0005509
            EMBL:AL161552 GO:GO:0005507 GO:GO:0071280 GO:GO:0005516
            GO:GO:0005547 GO:GO:0043325 GO:GO:0005546 GO:GO:0071219
            GO:GO:0008017 GO:GO:0071472 GO:GO:0005881 GO:GO:0043622
            GO:GO:0046658 GO:GO:0080025 EMBL:AL022224 GO:GO:0035865
            GO:GO:0010350 GO:GO:0071286 GO:GO:0031117 GO:GO:0006499 EMBL:Y08061
            EMBL:AY093084 EMBL:AY128768 EMBL:AK317524 EMBL:AY086004
            EMBL:AF083669 EMBL:AK221216 IPI:IPI00532377 IPI:IPI00656875
            PIR:T05334 RefSeq:NP_001031676.1 RefSeq:NP_001031677.1
            RefSeq:NP_193759.1 RefSeq:NP_849412.1 UniGene:At.21638
            UniGene:At.24152 STRING:Q96262 PRIDE:Q96262 ProMEX:Q96262
            EnsemblPlants:AT4G20260.1 EnsemblPlants:AT4G20260.2
            EnsemblPlants:AT4G20260.3 GeneID:827773 KEGG:ath:AT4G20260
            TAIR:At4g20260 eggNOG:NOG277615 HOGENOM:HOG000070951
            InParanoid:Q96262 OMA:FEKDSAK PhylomeDB:Q96262
            ProtClustDB:CLSN2685741 Genevestigator:Q96262 GO:GO:0071325
            GO:GO:0072709 GO:GO:0051511 InterPro:IPR008469 Uniprot:Q96262
        Length = 225

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 47/66 (71%), Positives = 53/66 (80%)

Query:     2 KIQTLVKDRKEDGLKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFE 61
             +++ LV+D K  GLKK+S AV K LEELVKIEFPGSKAVSEASS FGA  V GPV FIFE
Sbjct:    65 EVKALVRDPKVAGLKKNSAAVQKYLEELVKIEFPGSKAVSEASSSFGAGYVAGPVTFIFE 124

Query:    62 KVSTFI 67
             KVS F+
Sbjct:   125 KVSVFL 130


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.354    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      154        70   0.00091  102 3  11 22  0.47    28
                                                     29  0.41    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  384 (41 KB)
  Total size of DFA:  65 KB (2060 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.81u 0.22s 10.03t   Elapsed:  00:00:01
  Total cpu time:  9.81u 0.22s 10.03t   Elapsed:  00:00:01
  Start:  Thu May  9 21:23:49 2013   End:  Thu May  9 21:23:50 2013

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