Query 031720
Match_columns 154
No_of_seqs 23 out of 25
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 06:34:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031720.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031720hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2np0_B Synaptotagmin-2; botuli 45.3 13 0.00046 20.9 2.0 16 20-35 10-25 (26)
2 3me7_A Putative uncharacterize 15.7 1.6E+02 0.0056 20.0 3.7 49 17-66 76-139 (170)
3 1lfp_A Hypothetical protein AQ 15.1 51 0.0017 26.8 1.1 31 39-69 112-143 (249)
4 3raz_A Thioredoxin-related pro 13.8 2.3E+02 0.0078 18.2 3.8 46 19-65 68-117 (151)
5 2ggt_A SCO1 protein homolog, m 13.2 88 0.003 20.2 1.6 33 19-52 76-112 (164)
6 1kon_A Protein YEBC, YEBC; alp 12.4 70 0.0024 26.0 1.1 31 39-69 115-146 (249)
7 2gfq_A UPF0204 protein PH0006; 11.2 1.7E+02 0.0058 24.2 3.1 42 17-59 134-175 (298)
8 4f3q_A Transcriptional regulat 10.7 84 0.0029 25.5 1.0 31 39-69 115-146 (247)
9 1mw7_A Hypothetical protein HP 10.7 70 0.0024 25.9 0.6 31 39-69 108-140 (240)
10 4g75_A Phosphodiesterase; coli 10.4 78 0.0027 27.1 0.8 22 21-42 257-287 (297)
No 1
>2np0_B Synaptotagmin-2; botulinum, neurotoxin, synaptotagamin, receptor, hydrolase; 2.62A {Mus musculus}
Probab=45.28 E-value=13 Score=20.87 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhhcCC
Q 031720 20 TAVHKLLEELVKIEFP 35 (154)
Q Consensus 20 aaV~KfleELvKIeFP 35 (154)
...+||+.||-||..|
T Consensus 10 ~~k~kf~nel~kiplp 25 (26)
T 2np0_B 10 KLKEKFFNEINKXXXX 25 (26)
T ss_pred HHHHHHHHHHHhhhcC
Confidence 3567999999999765
No 2
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=15.66 E-value=1.6e+02 Score=19.97 Aligned_cols=49 Identities=8% Similarity=0.106 Sum_probs=31.5
Q ss_pred cchHHHHHHHHHHHhhcCCC-------c-hhhhhhhhhcCCc-------cCCCceeEEEecceee
Q 031720 17 KHSTAVHKLLEELVKIEFPG-------S-KAVSEASSKFGAA-------SVPGPVFFIFEKVSTF 66 (154)
Q Consensus 17 KnSaaV~KfleELvKIeFPG-------s-K~VSEAsSK~Gpa-------~vsGPV~fifEKVStF 66 (154)
-+...+.+|+++. .+.||+ . ..+.+.+..||=. +..-|.+|++++=...
T Consensus 76 d~~~~~~~~~~~~-~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i 139 (170)
T 3me7_A 76 DTLEDIKRFQKEY-GIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQI 139 (170)
T ss_dssp CCHHHHHHHHHHT-TCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBE
T ss_pred CCHHHHHHHHHHc-CCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeE
Confidence 3457888999887 477775 2 4555666666632 3455778888864443
No 3
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1
Probab=15.12 E-value=51 Score=26.84 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=25.8
Q ss_pred hhhhhhhhcCCccC-CCceeEEEecceeeeec
Q 031720 39 AVSEASSKFGAASV-PGPVFFIFEKVSTFIVT 69 (154)
Q Consensus 39 ~VSEAsSK~Gpa~v-sGPV~fifEKVStFi~~ 69 (154)
-|.-+.+|+|-.|- +|.|.|.|++...|+..
T Consensus 112 ~vR~~f~K~GG~lg~~GsV~~mF~~kG~i~~~ 143 (249)
T 1lfp_A 112 EVRHVFTKHGGNLGASGCVSYLFERKGYIEVP 143 (249)
T ss_dssp HHHHHHHHTTCEECCTTSSGGGEEEEEEEEEE
T ss_pred HHHHHHhhcCceecCCCchhhhhheeeEEEEc
Confidence 35567889988775 89999999999999864
No 4
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=13.84 E-value=2.3e+02 Score=18.16 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHhhcCCCch----hhhhhhhhcCCccCCCceeEEEeccee
Q 031720 19 STAVHKLLEELVKIEFPGSK----AVSEASSKFGAASVPGPVFFIFEKVST 65 (154)
Q Consensus 19 SaaV~KfleELvKIeFPGsK----~VSEAsSK~Gpa~vsGPV~fifEKVSt 65 (154)
...+.+|++.. .+.||..- ...+....||-..-.=|.+|++++=..
T Consensus 68 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~ 117 (151)
T 3raz_A 68 SDNIGNFLKQT-PVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCG 117 (151)
T ss_dssp HHHHHHHHHHS-CCSSCEEEECCSCHHHHHHTTTCCSCCSSEEEEEETTTT
T ss_pred hHHHHHHHHHc-CCCCceEecCccchHHHHHHhCCccCCCCEEEEECCCCc
Confidence 45678888875 57888542 334556678854556688899876443
No 5
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=13.23 E-value=88 Score=20.16 Aligned_cols=33 Identities=12% Similarity=0.244 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHhhcCCCc----hhhhhhhhhcCCccC
Q 031720 19 STAVHKLLEELVKIEFPGS----KAVSEASSKFGAASV 52 (154)
Q Consensus 19 SaaV~KfleELvKIeFPGs----K~VSEAsSK~Gpa~v 52 (154)
...+++|++.. .+.||+. ....+....||-..+
T Consensus 76 ~~~~~~~~~~~-~~~~~~l~~~~d~~~~~~~~~~v~~~ 112 (164)
T 2ggt_A 76 KEAIANYVKEF-SPKLVGLTGTREEVDQVARAYRVYYS 112 (164)
T ss_dssp HHHHHHHHHTT-CSSCEEEECCHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHc-CCCeEEEeCCHHHHHHHHHhcCeEEE
Confidence 46788999876 5788875 334455667885544
No 6
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1
Probab=12.35 E-value=70 Score=26.03 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=25.6
Q ss_pred hhhhhhhhcCCccC-CCceeEEEecceeeeec
Q 031720 39 AVSEASSKFGAASV-PGPVFFIFEKVSTFIVT 69 (154)
Q Consensus 39 ~VSEAsSK~Gpa~v-sGPV~fifEKVStFi~~ 69 (154)
-|.-+.+|+|-.|- +|.|.|.|++...|+..
T Consensus 115 ~vR~~f~K~GG~lg~~GsV~~~F~~kG~i~~~ 146 (249)
T 1kon_A 115 EVRHAFSKCGGNLGTDGSVAYLFSKKGVISFE 146 (249)
T ss_dssp HHHHHHHTTTCEECCTTSSGGGEEEEEEEEES
T ss_pred HHHHHHhhcCceecCCCchhhhhheeeEEEEC
Confidence 35567889988775 79999999999999864
No 7
>2gfq_A UPF0204 protein PH0006; structural genomics, PSI, Pro structure initiative, midwest center for structural genomic unknown function; 1.75A {Pyrococcus horikoshii} SCOP: c.56.7.1
Probab=11.21 E-value=1.7e+02 Score=24.25 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=34.2
Q ss_pred cchHHHHHHHHHHHhhcCCCchhhhhhhhhcCCccCCCceeEE
Q 031720 17 KHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFI 59 (154)
Q Consensus 17 KnSaaV~KfleELvKIeFPGsK~VSEAsSK~Gpa~vsGPV~fi 59 (154)
-|+...+.+|..|-++..+|-...-||.=- ||.-+.-|.+||
T Consensus 134 a~P~~~~~lLr~l~~~~~~~fevt~EATHH-GPt~l~~Ps~FV 175 (298)
T 2gfq_A 134 AIPSAMKLSLLKMSELNDLGWTVCYEATHH-GPTELEVPSFFI 175 (298)
T ss_dssp BCHHHHHHHHHHHHHHCCSCCEEEECCSCS-SCCCCCSBEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEecccc-CCCCCCCCcEEE
Confidence 356677899999999988887777777655 999999999886
No 8
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii}
Probab=10.67 E-value=84 Score=25.50 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=25.4
Q ss_pred hhhhhhhhcCCcc-CCCceeEEEecceeeeec
Q 031720 39 AVSEASSKFGAAS-VPGPVFFIFEKVSTFIVT 69 (154)
Q Consensus 39 ~VSEAsSK~Gpa~-vsGPV~fifEKVStFi~~ 69 (154)
-|.-+.+|+|-.| -+|.|.|.|++...|+..
T Consensus 115 ~vR~~f~K~gG~lg~~GsV~~~F~~kG~i~~~ 146 (247)
T 4f3q_A 115 EVRHAFSKCDGNLGTEGSVAYLFKQRGLITFP 146 (247)
T ss_dssp HHHHHHHHTTCEECCTTSSGGGEEEEEEEEEC
T ss_pred HHHHHHHhcCceECCCCceeEEEeeeEEEEEC
Confidence 3566789999877 468999999999999863
No 9
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1
Probab=10.65 E-value=70 Score=25.85 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=25.1
Q ss_pred hhhhhhhhcC-Ccc-CCCceeEEEecceeeeec
Q 031720 39 AVSEASSKFG-AAS-VPGPVFFIFEKVSTFIVT 69 (154)
Q Consensus 39 ~VSEAsSK~G-pa~-vsGPV~fifEKVStFi~~ 69 (154)
-|.-+.+|+| -.| -+|.|.|.|++...|+..
T Consensus 108 ~vR~~f~K~g~G~lg~~GsV~~~F~~kG~i~~~ 140 (240)
T 1mw7_A 108 NLKSYFNKTQGASIVPNGSLEFMFNRKSVFECL 140 (240)
T ss_dssp HHHHHHTTSTTCEEECTTTTTTSEEEEEEEEEE
T ss_pred HHHHHHhhcCCeeeCCCCcchhhheeeeEEEEe
Confidence 3556788998 666 479999999999999864
No 10
>4g75_A Phosphodiesterase; colicin-M like, peptidoglycan degrading enzyme, hydrolase; 1.70A {Pseudomonas aeruginosa} PDB: 4g76_A
Probab=10.37 E-value=78 Score=27.13 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=18.7
Q ss_pred HHHHHHHHHH---------hhcCCCchhhhh
Q 031720 21 AVHKLLEELV---------KIEFPGSKAVSE 42 (154)
Q Consensus 21 aV~KfleELv---------KIeFPGsK~VSE 42 (154)
..|.||.+|. .|.|||++.||.
T Consensus 257 ~lTt~L~~lG~~~~~~TDY~I~ipGe~pIsf 287 (297)
T 4g75_A 257 GMTRLGREVGQKFKDTTPYPIGIPGAIPVNI 287 (297)
T ss_dssp HHHHHHHHGGGTSTTCCCEEEECCSCEEEEE
T ss_pred HHHHHHHHhhhhccCCCceEEeccCcceeee
Confidence 5789999996 499999998874
Done!