Query 031720
Match_columns 154
No_of_seqs 23 out of 25
Neff 1.9
Searched_HMMs 13730
Date Mon Mar 25 06:34:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031720.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031720hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lu4a_ c.47.1.10 (A:) Soluble 21.4 39 0.0028 20.9 3.1 43 17-62 65-108 (134)
2 d1p16a2 d.142.2.3 (A:1-245) mR 17.4 23 0.0017 24.2 1.4 26 22-47 25-53 (245)
3 d1kona_ e.39.1.1 (A:) Hypothet 17.3 20 0.0015 26.3 1.1 31 39-69 110-141 (244)
4 d2gkea2 d.21.1.1 (A:131-274) D 16.7 8.6 0.00062 26.7 -1.1 33 30-62 108-140 (144)
5 d1k8ua_ a.39.1.2 (A:) Calcycli 15.0 26 0.0019 21.9 1.0 28 2-29 32-59 (89)
6 d1ksoa_ a.39.1.2 (A:) Calcycli 12.2 37 0.0027 21.2 1.2 28 2-29 32-61 (93)
7 d1lfpa_ e.39.1.1 (A:) Hypothet 11.9 34 0.0025 24.8 1.0 30 39-68 108-138 (243)
8 d2z0sa2 d.51.1.1 (A:148-234) E 11.9 36 0.0026 21.9 1.1 27 3-32 59-85 (87)
9 d1ueka2 d.58.26.5 (A:149-268) 11.9 43 0.0031 20.9 1.4 36 26-61 54-94 (120)
10 d1mw7a_ e.39.1.1 (A:) Hypothet 11.4 30 0.0022 24.9 0.6 29 40-68 89-119 (220)
No 1
>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=21.36 E-value=39 Score=20.89 Aligned_cols=43 Identities=9% Similarity=0.295 Sum_probs=30.1
Q ss_pred cchHHHHHHHHHHHhhcCCCchhh-hhhhhhcCCccCCCceeEEEec
Q 031720 17 KHSTAVHKLLEELVKIEFPGSKAV-SEASSKFGAASVPGPVFFIFEK 62 (154)
Q Consensus 17 KnSaaV~KfleELvKIeFPGsK~V-SEAsSK~Gpa~vsGPV~fifEK 62 (154)
.+...+++|+++. ++.||-.-.- .+....||.. .=|.+||+++
T Consensus 65 ~~~~~~~~~~~~~-~~~~p~~~d~~~~~~~~~~v~--~~P~~~lid~ 108 (134)
T d1lu4a_ 65 ADVGAMQSFVSKY-NLNFTNLNDADGVIWARYNVP--WQPAFVFYRA 108 (134)
T ss_dssp SCHHHHHHHHHHH-TCCSEEEECTTSHHHHHTTCC--SSSEEEEECT
T ss_pred cchhhhhhhhhhh-ccccceeeCchHHHHHHcCCC--cCCEEEEEeC
Confidence 4667899999997 8999854322 2344568854 3488899886
No 2
>d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]}
Probab=17.43 E-value=23 Score=24.18 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=17.4
Q ss_pred HHHHHHHHHhh---cCCCchhhhhhhhhc
Q 031720 22 VHKLLEELVKI---EFPGSKAVSEASSKF 47 (154)
Q Consensus 22 V~KfleELvKI---eFPGsK~VSEAsSK~ 47 (154)
++..+-+|.+. .|||+..||=.-..+
T Consensus 25 ~~~~v~~~~~~~~~~FpG~qPvs~~~~~~ 53 (245)
T d1p16a2 25 LRLMVAELLGRRNTGFPGSQPVSFERRHL 53 (245)
T ss_dssp HHHHHHHHHTCSCCSCCCEEEEECCHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCcccccHHHH
Confidence 45555666665 799999998444443
No 3
>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli [TaxId: 562]}
Probab=17.33 E-value=20 Score=26.33 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=25.0
Q ss_pred hhhhhhhhcCCcc-CCCceeEEEecceeeeec
Q 031720 39 AVSEASSKFGAAS-VPGPVFFIFEKVSTFIVT 69 (154)
Q Consensus 39 ~VSEAsSK~Gpa~-vsGPV~fifEKVStFi~~ 69 (154)
-|.-..+|+|-.| -+|+|.|.|+++..+...
T Consensus 110 ~vR~~f~K~gG~lg~~GsV~~~F~~kG~i~~~ 141 (244)
T d1kona_ 110 EVRHAFSKCGGNLGTDGSVAYLFSKKGVISFE 141 (244)
T ss_dssp HHHHHHHTTTCEECCTTSSGGGEEEEEEEEES
T ss_pred HHHHHHHHcCCeeCCCccHhhhhheeceeccC
Confidence 3456788998887 679999999999988753
No 4
>d2gkea2 d.21.1.1 (A:131-274) Diaminopimelate epimerase {Haemophilus influenzae [TaxId: 727]}
Probab=16.74 E-value=8.6 Score=26.65 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=22.7
Q ss_pred HhhcCCCchhhhhhhhhcCCccCCCceeEEEec
Q 031720 30 VKIEFPGSKAVSEASSKFGAASVPGPVFFIFEK 62 (154)
Q Consensus 30 vKIeFPGsK~VSEAsSK~Gpa~vsGPV~fifEK 62 (154)
.+|.+||-...-+-....+..+++||..++|+=
T Consensus 108 i~V~~~GG~l~V~~~~~~~~i~L~Gpa~~vf~G 140 (144)
T d2gkea2 108 VQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDG 140 (144)
T ss_dssp EEEEETTEEEEEEECCTTSCEEEEECCEEEEEE
T ss_pred EEEEECCCEEEEEEECCCCEEEEEecCEEEEEE
Confidence 468899977532222224567899999999973
No 5
>d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a6 [TaxId: 9606]}
Probab=14.99 E-value=26 Score=21.89 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=20.2
Q ss_pred ccccccccccccccccchHHHHHHHHHH
Q 031720 2 KIQTLVKDRKEDGLKKHSTAVHKLLEEL 29 (154)
Q Consensus 2 eiK~LVKe~k~sglKKnSaaV~KfleEL 29 (154)
|+|.|++.--..|.+++...|.+++.+|
T Consensus 32 Elk~Ll~~e~~~~~~~~~~~~~~~~~~l 59 (89)
T d1k8ua_ 32 ELKELIQKELTIGSKLQDAEIARLMEDL 59 (89)
T ss_dssp HHHHHHHHHSCCGGGTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHh
Confidence 4667777654567777778888888776
No 6
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}
Probab=12.23 E-value=37 Score=21.25 Aligned_cols=28 Identities=11% Similarity=0.178 Sum_probs=18.0
Q ss_pred ccccccccc--cccccccchHHHHHHHHHH
Q 031720 2 KIQTLVKDR--KEDGLKKHSTAVHKLLEEL 29 (154)
Q Consensus 2 eiK~LVKe~--k~sglKKnSaaV~KfleEL 29 (154)
|+|.|++.- ..-+.++++..|.+++.+|
T Consensus 32 Elk~ll~~~~~~~~~~~~~~~~~~~~~~~l 61 (93)
T d1ksoa_ 32 ELKELLQKELATWTPTEFRECDYNKFMSVL 61 (93)
T ss_dssp HHHHHHHHHTTTCCCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccccCCCHHHHHHHHHHH
Confidence 456666653 3334556778888888776
No 7
>d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus [TaxId: 63363]}
Probab=11.95 E-value=34 Score=24.80 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=24.1
Q ss_pred hhhhhhhhcCCccC-CCceeEEEecceeeee
Q 031720 39 AVSEASSKFGAASV-PGPVFFIFEKVSTFIV 68 (154)
Q Consensus 39 ~VSEAsSK~Gpa~v-sGPV~fifEKVStFi~ 68 (154)
.|.-+.+|+|-.|- +|-|+|.|+++..|..
T Consensus 108 ~vr~~f~K~gG~l~~~GsV~~~F~~kG~i~~ 138 (243)
T d1lfpa_ 108 EVRHVFTKHGGNLGASGCVSYLFERKGYIEV 138 (243)
T ss_dssp HHHHHHHHTTCEECCTTSSGGGEEEEEEEEE
T ss_pred HHHHHHHhcCCccccccceeeeecccceecc
Confidence 35567889997764 5899999999998865
No 8
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]}
Probab=11.91 E-value=36 Score=21.91 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=19.1
Q ss_pred cccccccccccccccchHHHHHHHHHHHhh
Q 031720 3 IQTLVKDRKEDGLKKHSTAVHKLLEELVKI 32 (154)
Q Consensus 3 iK~LVKe~k~sglKKnSaaV~KfleELvKI 32 (154)
|+.+.++...+||.. .|.+||++.-++
T Consensus 59 I~~I~~ea~v~gl~~---rI~~fle~~~~~ 85 (87)
T d2z0sa2 59 IKIIDEEAYTSGLTK---RIIKFIEEERRI 85 (87)
T ss_dssp HHHHHHCSCCTTCHH---HHHHHHHHHHHH
T ss_pred HHHHHHhchhccHHH---HHHHHHHHhhhc
Confidence 455666777777744 799999987654
No 9
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}
Probab=11.86 E-value=43 Score=20.88 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=26.3
Q ss_pred HHHHHhhcCCCchhhhhhhhhcCC--ccC--CCce-eEEEe
Q 031720 26 LEELVKIEFPGSKAVSEASSKFGA--ASV--PGPV-FFIFE 61 (154)
Q Consensus 26 leELvKIeFPGsK~VSEAsSK~Gp--a~v--sGPV-~fifE 61 (154)
|+..+.-.||..+.+-+...++|. ..+ |||- |.+|+
T Consensus 54 le~~~~~~~p~l~~~~~~l~~~g~~~~~mSGSGst~F~l~~ 94 (120)
T d1ueka2 54 LEGPAFRLFPELKEVRGRMRALGLRGVLMSGSGSAFFGLAE 94 (120)
T ss_dssp THHHHHHHCTHHHHHHHHHHHTTCEEEEECTTSSCEEEECS
T ss_pred hHHHHHHHHhhHHHHHHHHHHhhhhheeecCCCCeEEEEeC
Confidence 566677789999999999999997 445 5664 44444
No 10
>d1mw7a_ e.39.1.1 (A:) Hypothetical protein HP0162 {Helicobacter pylori [TaxId: 210]}
Probab=11.40 E-value=30 Score=24.87 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=22.3
Q ss_pred hhhhhhhc-CCccC-CCceeEEEecceeeee
Q 031720 40 VSEASSKF-GAASV-PGPVFFIFEKVSTFIV 68 (154)
Q Consensus 40 VSEAsSK~-Gpa~v-sGPV~fifEKVStFi~ 68 (154)
|.-+.+|+ |-.+- +|.|.|.|++..-|..
T Consensus 89 vr~~f~K~~Gg~lg~~GsV~~~F~~kG~i~~ 119 (220)
T d1mw7a_ 89 LKSYFNKTQGASIVPNGSLEFMFNRKSVFEC 119 (220)
T ss_dssp HHHHHTTSTTCEEECTTTTTTSEEEEEEEEE
T ss_pred HHHHHhhcccccccCCCcchhhheeeeeeee
Confidence 45577898 64443 5999999999998875
Done!