BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031721
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
Query: 29 AGLPPEEKPRLCDDACEKELENV---PMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVA 85
A PE+ +D E E + +VTTESGL+Y+D+ G G G V+ +Y
Sbjct: 72 ADQTPEDLDMEDNDIIEAHREQIGGSTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTG 131
Query: 86 MIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIP 134
+ GQ FDSS ++ P+ F +G G V+KG DEG+ MK GG RRL IP
Sbjct: 132 WLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
Query: 33 PEEKPRLCDDACEKELENV---PMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPS 89
PE+ +D E E + +VTTESGL+Y+D+ G G G V+ +Y +
Sbjct: 76 PEDLDMEDNDIIEAHREQIGGSTIVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTD 135
Query: 90 GQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIP 134
GQ FDSS ++ P+ F +G G V+KG DEG+ MK GG RRL IP
Sbjct: 136 GQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
Query: 29 AGLPPEEKPRLCDDACEKELENV---PMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVA 85
A PE+ +D E E + +VTTESGL+Y+D+ G G G V+ +Y
Sbjct: 72 ADQTPEDLDMEDNDIIEAHREQIGGSTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTG 131
Query: 86 MIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIP 134
+ GQ FDSS ++ P+ F +G G V+KG DEG+ MK GG RRL IP
Sbjct: 132 WLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
Query: 29 AGLPPEEKPRLCDDACEKELENV---PMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVA 85
A PE+ +D E E + +VTTESGL+Y+D+ G G G V+ +Y
Sbjct: 72 ADQTPEDLDMEDNDIIEAHREQIGGSTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTG 131
Query: 86 MIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIP 134
+ GQ FDSS ++ P+ F +G G V+KG DEG+ MK GG RRL IP
Sbjct: 132 WLTDGQKFDSSKDRNDPFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 52/82 (63%)
Query: 53 MVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
+VTTESGL+Y+D+ G G G V+ +Y + GQ FDSS ++ P+ F +G G V
Sbjct: 3 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGHV 62
Query: 113 VKGLDEGILTMKTGGKRRLYIP 134
+KG DEG+ MK GG RRL IP
Sbjct: 63 IKGWDEGVQGMKVGGVRRLTIP 84
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 52/82 (63%)
Query: 53 MVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQV 112
+VTTESGL+Y+D+ G G G V+ +Y + GQ FDSS ++ P+ F +G G V
Sbjct: 3 VVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMV 62
Query: 113 VKGLDEGILTMKTGGKRRLYIP 134
+KG DEG+ MK GG RRL IP
Sbjct: 63 IKGWDEGVQGMKVGGVRRLTIP 84
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 54/85 (63%)
Query: 50 NVPMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGS 109
++ +VTTESGL+Y+D+ G G G V+ +Y + GQ FDSS ++ P+ F +G
Sbjct: 20 HMTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGG 79
Query: 110 GQVVKGLDEGILTMKTGGKRRLYIP 134
G V+KG DEG+ MK GG RRL IP
Sbjct: 80 GMVIKGWDEGVQGMKVGGVRRLTIP 104
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 54/85 (63%)
Query: 50 NVPMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGS 109
++ +VTTESGL+Y+D+ G G G V+ +Y + GQ FDSS ++ P+ F +G
Sbjct: 4 SMTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGG 63
Query: 110 GQVVKGLDEGILTMKTGGKRRLYIP 134
G V+KG DEG+ MK GG RRL IP
Sbjct: 64 GMVIKGWDEGVQGMKVGGVRRLTIP 88
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 79.3 bits (194), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 33 PEEKPRLCDDACEKELENV---PMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPS 89
PE+ +D E E + +VTTESGL+Y+D+ G G G V+ +Y +
Sbjct: 76 PEDLDMEDNDIIEAHREQIGGSTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTD 135
Query: 90 GQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIP 134
GQ F SS ++ P+ F +G G V+KG DEG+ MK GG RRL IP
Sbjct: 136 GQKFGSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 55/94 (58%), Gaps = 6/94 (6%)
Query: 47 ELENVPMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFR 106
E + + SGL + D VG GP G + A+YV + +G++FDSS +G+P FR
Sbjct: 1 ETTSCEFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFR 60
Query: 107 VGSGQVVKGLDEGILT------MKTGGKRRLYIP 134
+G G+V+KG D+GIL M TGGKR L IP
Sbjct: 61 IGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIP 94
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 57 ESGLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKG 115
E ++ I G G + P G V +Y + +GQ FDSS+++G P+ +G GQV+KG
Sbjct: 5 EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKG 64
Query: 116 LDEGILTMKTGGKRRLYIPGP 136
D GI + G K RL IPGP
Sbjct: 65 WDVGIPKLSVGEKARLTIPGP 85
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 73 PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLY 132
P G +V +Y P G+ FDSS +G+P+ F +G+G+V+KG D+G+ TM G K
Sbjct: 40 PQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFT 99
Query: 133 IP 134
IP
Sbjct: 100 IP 101
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%)
Query: 82 NYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIP 134
+Y + G FDSSL + +P++F +G+GQV+KG D+G+L M G KR+L IP
Sbjct: 15 HYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIP 67
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 66 KVGQGPSPP-VGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMK 124
+VG G P +G +V +Y + +G+ FDSS ++ P++F +G GQV+K D G+ TMK
Sbjct: 39 RVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMK 98
Query: 125 TG 126
G
Sbjct: 99 KG 100
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%)
Query: 72 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRL 131
+P VG +V +Y + G+ FDSS ++ + F++G GQV+KG D+GI TMK G
Sbjct: 42 TPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALF 101
Query: 132 YIP 134
IP
Sbjct: 102 TIP 104
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%)
Query: 72 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRL 131
+P VG +V +Y + G+ FDSS ++ + F++G GQV+KG D+GI TMK G
Sbjct: 26 TPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALF 85
Query: 132 YIP 134
IP
Sbjct: 86 TIP 88
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 59 GLQYKDIKVGQGPSPPVGFQVAA-NYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 117
G+Q + G + P QVA +Y + G++FDSS +G+P+ F VG G+V++G D
Sbjct: 2 GVQVVTLAAGDEATYPKAGQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRGWD 61
Query: 118 EGILTMKTGGKRRL 131
EG+ M G + +L
Sbjct: 62 EGVAQMSVGQRAKL 75
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 66 KVGQGPSPP-VGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMK 124
+VG G P +G +V +Y + +G+ FDSS ++ P++F +G GQV+K D G+ TMK
Sbjct: 39 RVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMK 98
Query: 125 TG 126
G
Sbjct: 99 RG 100
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 66 KVGQGPSPP-VGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMK 124
+VG G P +G +V +Y + +G+ FDSS ++ P++F +G GQV+K D G+ TMK
Sbjct: 43 RVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMK 102
Query: 125 TG 126
G
Sbjct: 103 KG 104
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 66 KVGQGPSPP-VGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMK 124
+VG G P +G +V +Y + +G+ FDSS ++ P++F +G GQV+K D G+ TMK
Sbjct: 43 RVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMK 102
Query: 125 TG 126
G
Sbjct: 103 KG 104
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 66 KVGQGPSPP-VGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMK 124
+VG G P +G +V +Y + +G+ FDSS ++ P++F +G GQV+K D G+ TMK
Sbjct: 43 RVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMK 102
Query: 125 TG 126
G
Sbjct: 103 KG 104
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 66 KVGQGPSPP-VGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMK 124
+VG G P +G +V +Y + +G+ FDSS ++ P++F +G GQV+K D G+ TMK
Sbjct: 27 RVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMK 86
Query: 125 TG 126
G
Sbjct: 87 KG 88
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 66 KVGQGPSPP-VGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMK 124
+VG G P +G +V +Y + +G+ FDSS ++ P++F +G GQV+K D G+ TMK
Sbjct: 27 RVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMK 86
Query: 125 TG 126
G
Sbjct: 87 KG 88
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
(Tcmip)
Length = 167
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 58 SGLQYKDIKVGQGP-SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGL 116
SGL ++ I G G +P + + +Y + G +FDSS E+G+P FR +V+KG
Sbjct: 37 SGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFR--PNEVIKGW 94
Query: 117 DEGILTMKTGGKRRLYIP 134
E + M+ G + RL+IP
Sbjct: 95 TEALQLMREGDRWRLFIP 112
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella
Pneumophila Mip
pdb|2VCD|A Chain A, Solution Structure Of The Fkbp-domain Of Legionella
Pneumophila Mip In Complex With Rapamycin
Length = 137
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 38 RLCDDACEKELENVP-MVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSS 96
++ +A E +N P +V SGLQYK I G G P V Y + G +FDS+
Sbjct: 9 KVKGEAFLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDST 68
Query: 97 LEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIP-----------GPVISNTLLIL 145
+ G+P F+V QV+ G E + M G +Y+P GP+ N LI
Sbjct: 69 EKTGKPATFQV--SQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIF 126
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 14/124 (11%)
Query: 35 EKPRLCDDACEKELENVP-MVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIF 93
++ ++ +A E +N P +V SGLQYK I G G P V Y + G +F
Sbjct: 82 DENKVKGEAFLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVF 141
Query: 94 DSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIP-----------GPVISNTL 142
DS+ + G+P F+V QV+ G E + M G +Y+P GP+ N
Sbjct: 142 DSTEKTGKPATFQV--SQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNET 199
Query: 143 LILH 146
LI
Sbjct: 200 LIFK 203
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 117
G+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V++GL+
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGLE 60
Query: 118 EGILTMKTGGKRRLYI 133
EG+ M G + +L I
Sbjct: 61 EGVAQMSVGQRAKLTI 76
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 117
G++ + I G G + P G +Y M+ +G+ FDSS ++ +P+ FR+G +V+KG +
Sbjct: 1 GVEIETISPGDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFE 60
Query: 118 EGILTMKTGGKRRL 131
EG M G + +L
Sbjct: 61 EGAAQMSLGQRAKL 74
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 117
G+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V++G +
Sbjct: 1 GVQVETISPGDGRTFPKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 118 EGILTMKTGGKRRLYI 133
EG+ M G + +L I
Sbjct: 61 EGVAQMSVGQRAKLTI 76
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 117
G+Q + I G G + P G +Y M+ G+ FDSS +K +P+ F +G +V++G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWE 60
Query: 118 EGILTMKTGGKRRLYI 133
EG+ M G + +L I
Sbjct: 61 EGVAQMSVGQRAKLTI 76
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 117
G+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V++G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGFE 60
Query: 118 EGILTMKTGGKRRLYI 133
EG+ M G + +L I
Sbjct: 61 EGVAQMSVGQRAKLTI 76
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 117
G+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V++G +
Sbjct: 3 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 62
Query: 118 EGILTMKTGGKRRLYI 133
EG+ M G + +L I
Sbjct: 63 EGVAQMSVGQRAKLTI 78
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 117
G+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V++G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 118 EGILTMKTGGKRRLYI 133
EG+ M G + +L I
Sbjct: 61 EGVAQMSVGQRAKLTI 76
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 117
G+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V++G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWE 60
Query: 118 EGILTMKTGGKRRLYI-----------PGPVISNTLLIL 145
EG+ M G + +L I PG + N LI
Sbjct: 61 EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPNATLIF 99
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 73 PPVGFQVAANYVAMIPSGQIFDSSLE-------KGRPYIFRVGSGQVVKGLDEGILTMKT 125
P G V Y +P G +FD++++ +P F+VG G+V++G DE +LTM
Sbjct: 20 PKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSK 79
Query: 126 GGKRRLYI 133
G K RL I
Sbjct: 80 GEKARLEI 87
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 117
G+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V++G
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQ 60
Query: 118 EGILTMKTGGKRRLYI 133
EG+ M G + +L I
Sbjct: 61 EGVAQMSVGQRAKLTI 76
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 66 KVGQGP-SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMK 124
K GQG P G V +YV + +G FDSS ++G + F +G G V+KG D G+ TM
Sbjct: 22 KEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMT 81
Query: 125 TG 126
G
Sbjct: 82 KG 83
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 117
G+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V++G
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWA 60
Query: 118 EGILTMKTGGKRRLYI 133
EG+ M G + +L I
Sbjct: 61 EGVAQMSVGQRAKLTI 76
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 60 LQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDE 118
+Q + I G G + P G +Y M+ G+ FDSS ++ +P+ F +G +V++G +E
Sbjct: 2 VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEE 61
Query: 119 GILTMKTGGKRRLYI 133
G+ M G + +L I
Sbjct: 62 GVAQMSVGQRAKLTI 76
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 59 GLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDE 118
G+ ++ G GP P +V YV +P G+IFD S + P FR+ S V+ G
Sbjct: 118 GILMTELTPGTGPKPDANGRVEVRYVGRLPDGKIFDQSTQ---PQWFRLDS--VISGWTS 172
Query: 119 GILTMKTGGKRRLYIP 134
+ M TG K RL IP
Sbjct: 173 ALQNMPTGAKWRLVIP 188
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 117
G+Q + I G G + P G +Y M+ G+ DSS ++ +P+ F +G +V++G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 118 EGILTMKTGGKRRLYI 133
EG+ M G + +L I
Sbjct: 61 EGVAQMSVGQRAKLTI 76
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLD 117
G+Q + I G G + P G +Y M+ G+ DSS ++ +P+ F +G +V++G +
Sbjct: 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 118 EGILTMKTGGKRRLYI 133
EG+ M G + +L I
Sbjct: 61 EGVAQMSVGQRAKLTI 76
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 68 GQGPSPPVGFQVAANYVAMI-PSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTM 123
G+ +P G +V +YV + SG++FDSS E+ P+ F +G G+V+KG D + +M
Sbjct: 28 GEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKGWDICVASM 84
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 73 PPVGFQVAANYVAMIPSGQIFDSSLE-------KGRPYIFRVGSGQVVKGLDEGILTMKT 125
P G V Y + G +FD++++ +P F+VG G+V++G DE +LTM
Sbjct: 17 PKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSK 76
Query: 126 GGKRRLYI 133
G K RL I
Sbjct: 77 GEKARLEI 84
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 13/73 (17%)
Query: 76 GFQVAANYVAMIPSGQIFDSSLEK-------------GRPYIFRVGSGQVVKGLDEGILT 122
G ++ +Y+ + SG +FD+S+E+ P F VG GQ+++G +E +L
Sbjct: 5 GVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLD 64
Query: 123 MKTGGKRRLYIPG 135
M+ G ++ + IP
Sbjct: 65 MEVGDEKTVKIPA 77
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 72 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTG 126
+P +G +V +Y + G FDSSL++ + F +G G+V+K D + TMK G
Sbjct: 45 TPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVG 99
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 73 PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTG 126
P +G +V +Y + G FDSSL++ + F +G G+V+K D I TMK G
Sbjct: 47 PMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVG 100
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 73 PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTG 126
P +G +V +Y + G FDSSL++ + F +G G+V+K D I TMK G
Sbjct: 67 PMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVG 120
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 73 PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTG 126
P +G +V +Y + G FDSSL++ + F +G G+V+K D I TMK G
Sbjct: 51 PMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVG 104
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 45 EKELENVPMVTTESGLQYKDIKVG-QGPS--PPVGFQVAANYVAMIPS-GQIFDSSLEKG 100
E+E E V + T + G+ +K G +G P G +V +YV + S G++FDSS ++
Sbjct: 4 EQEFEKVEL-TADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRN 62
Query: 101 RPYIFRVGSGQVVKGLDEGILTMKTGGK 128
P+ F + G+V+KG D + +M+ K
Sbjct: 63 VPFKFHLEQGEVIKGWDICVSSMRKNEK 90
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 45 EKELENVPMVTTESGLQYKDIKVG-QGPS--PPVGFQVAANYVAMIPS-GQIFDSSLEKG 100
E+E E V + T + G+ +K G +G P G +V +YV + S G++FDSS ++
Sbjct: 4 EQEFEKVEL-TADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRN 62
Query: 101 RPYIFRVGSGQVVKGLDEGILTMKTGGK 128
P+ F + G+V+KG D + +M+ K
Sbjct: 63 VPFKFHLEQGEVIKGWDICVSSMRKNEK 90
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 55 TTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVK 114
T+ +GL Y+ ++ G+G +P V NY + G+ FD+S +G P FR+ V+
Sbjct: 118 TSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIP 175
Query: 115 GLDEGILTMKTGGKRRLYIP 134
G EG+ +K GGK +L IP
Sbjct: 176 GWTEGLKNIKKGGKIKLVIP 195
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 55 TTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVK 114
T+ +GL Y+ ++ G+G +P V NY + G+ FD+S +G P FR+ V+
Sbjct: 118 TSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIP 175
Query: 115 GLDEGILTMKTGGKRRLYIP 134
G EG+ +K GGK +L IP
Sbjct: 176 GWTEGLKNIKKGGKIKLVIP 195
>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The
Chaperone Binding Site Occupied By The Linker Of The
Purification Tag
Length = 169
Score = 33.9 bits (76), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 79 VAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGK 128
V ++ + G +S+ G+P +FR+G + +GL++ +L +K G K
Sbjct: 31 VLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDK 80
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 33.5 bits (75), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 89 SGQIFDSSLEK--GRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIP 134
G +F S+ + G+P F +G + +KG D+G+ M G KR+L IP
Sbjct: 46 DGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIP 93
>pdb|3PRB|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRB|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRD|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 231
Score = 32.7 bits (73), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 92 IFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIP 134
I++ ++ G IF G GQV+ GLDE IL M G +R + +P
Sbjct: 34 IYNPAMIYGPVAIF-AGEGQVLPGLDEAILEMDVGEEREVVLP 75
>pdb|3PR9|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 157
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 92 IFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIP 134
I++ ++ G IF G GQV+ GLDE IL M G +R + +P
Sbjct: 34 IYNPAMIYGPVAIF-AGEGQVLPGLDEAILEMDVGEEREVVLP 75
>pdb|3NJX|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant
H210a
Length = 508
Score = 30.8 bits (68), Expect = 0.30, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 66 KVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGS 109
K+G+ P GF+ AAN + M PS DS + P + VGS
Sbjct: 344 KIGEWDGQPTGFRNAANQLRMHPS----DSRMSSWGPLTYTVGS 383
>pdb|2XHN|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a
Active Site Mutant
pdb|2XHN|B Chain B, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a
Active Site Mutant
pdb|3NJV|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a
Substrate Complex
Length = 508
Score = 30.8 bits (68), Expect = 0.30, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 66 KVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGS 109
K+G+ P GF+ AAN + M PS DS + P + VGS
Sbjct: 344 KIGEWDGQPTGFRNAANQLRMHPS----DSRMSSWGPLTYTVGS 383
>pdb|1NKG|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus
Length = 508
Score = 30.8 bits (68), Expect = 0.30, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 66 KVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGS 109
K+G+ P GF+ AAN + M PS DS + P + VGS
Sbjct: 344 KIGEWDGQPTGFRNAANQLRMHPS----DSRMSSWGPLTYTVGS 383
>pdb|1HXV|A Chain A, Ppiase Domain Of The Mycoplasma Genitalium Trigger Factor
Length = 113
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 100 GRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGP 136
+ Y +GS +KG + G++ MK K+ L + P
Sbjct: 54 AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFP 90
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 27.3 bits (59), Expect = 3.7, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 35/83 (42%)
Query: 10 IGLVLGVSTLILDSFDAKGAGLPPEEKPRLCDDACEKELENVPMVTTESGLQYKDIKVGQ 69
+ +V G T+ + DA+ A +P L D+ ++PM ++ + I
Sbjct: 90 VWIVQGDPTIYYNLSDAQAAAIPSVSNAYLDDEKTVLAKLSMPMTLADAASGFTVIDKTT 149
Query: 70 GPSPPVGFQVAANYVAMIPSGQI 92
G PV V+AN V + G +
Sbjct: 150 GEKIPVTSAVSANPVTAVLVGDL 172
>pdb|3K4I|A Chain A, Crystal Structure Of Uncharacterized Protein Pspto_3204
From Pseudomonas Syringae Pv. Tomato Str. Dc3000
pdb|3K4I|B Chain B, Crystal Structure Of Uncharacterized Protein Pspto_3204
From Pseudomonas Syringae Pv. Tomato Str. Dc3000
pdb|3K4I|C Chain C, Crystal Structure Of Uncharacterized Protein Pspto_3204
From Pseudomonas Syringae Pv. Tomato Str. Dc3000
Length = 244
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 76 GFQVAANYVAMIPSGQIFDSS 96
GF+ AANY+ +PSG + SS
Sbjct: 70 GFRGAANYIDQVPSGSVIVSS 90
>pdb|2KR7|A Chain A, Solution Structure Of Helicobacter Pylori Slyd
Length = 151
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 89 SGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTG 126
S + DS++ K P F +G+ Q++ GL++ +L + G
Sbjct: 24 SSIVLDSNISK-EPLEFIIGTNQIIAGLEKAVLKAQIG 60
>pdb|2OKC|A Chain A, Crystal Structure Of Type I Restriction Enzyme Stysji M
Protein (np_813429.1) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.20 A Resolution
pdb|2OKC|B Chain B, Crystal Structure Of Type I Restriction Enzyme Stysji M
Protein (np_813429.1) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.20 A Resolution
Length = 445
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 8/132 (6%)
Query: 15 GVSTLILDSFDAKGAGLPPEEKPRLCDDACEKELENVPMVTTESGLQYKDIKVGQGPSPP 74
G +L ++D +EK D ++N P+V T + +G SP
Sbjct: 181 GTGGFLLTAYDYXKGQSASKEKRDFLRDKALHGVDNTPLVVTLASXNLYLHGIGTDRSPI 240
Query: 75 VG--------FQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTG 126
V + +A P G S++ RP + + L L +KTG
Sbjct: 241 VCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHXXLXLKTG 300
Query: 127 GKRRLYIPGPVI 138
G+ + +P V+
Sbjct: 301 GRAAVVLPDNVL 312
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.139 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,918,837
Number of Sequences: 62578
Number of extensions: 207708
Number of successful extensions: 496
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 72
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)