Query 031721
Match_columns 154
No_of_seqs 157 out of 1360
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 04:26:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 100.0 6.2E-29 1.3E-33 182.4 11.4 102 49-152 92-193 (205)
2 KOG0544 FKBP-type peptidyl-pro 99.9 4E-27 8.7E-32 152.2 9.8 94 59-152 2-96 (108)
3 PRK11570 peptidyl-prolyl cis-t 99.9 1.2E-24 2.6E-29 163.0 13.0 101 50-152 94-194 (206)
4 TIGR03516 ppisom_GldI peptidyl 99.9 5.4E-24 1.2E-28 156.1 14.5 101 51-152 62-164 (177)
5 KOG0549 FKBP-type peptidyl-pro 99.9 3.5E-24 7.6E-29 154.5 11.0 98 56-153 66-165 (188)
6 KOG0552 FKBP-type peptidyl-pro 99.9 7.6E-24 1.6E-28 158.8 10.9 96 54-151 116-213 (226)
7 PRK10902 FKBP-type peptidyl-pr 99.9 2.1E-22 4.5E-27 156.1 13.2 100 50-152 138-237 (269)
8 PF00254 FKBP_C: FKBP-type pep 99.8 5.4E-20 1.2E-24 121.7 9.7 81 72-152 4-85 (94)
9 PRK15095 FKBP-type peptidyl-pr 99.8 3.8E-18 8.2E-23 122.9 8.7 72 72-143 4-75 (156)
10 COG1047 SlpA FKBP-type peptidy 99.6 9.2E-16 2E-20 111.0 9.0 72 72-143 2-73 (174)
11 PRK10737 FKBP-type peptidyl-pr 99.6 6.7E-15 1.4E-19 109.2 8.7 71 72-143 2-72 (196)
12 KOG0543 FKBP-type peptidyl-pro 99.5 6.3E-14 1.4E-18 112.4 11.1 92 57-152 83-178 (397)
13 TIGR00115 tig trigger factor. 99.0 1.4E-09 3E-14 89.3 8.4 73 71-146 145-217 (408)
14 KOG0543 FKBP-type peptidyl-pro 99.0 7.4E-10 1.6E-14 89.2 5.9 62 66-128 1-63 (397)
15 PRK01490 tig trigger factor; P 98.9 5.1E-09 1.1E-13 86.7 8.8 72 72-146 157-228 (435)
16 COG0544 Tig FKBP-type peptidyl 98.9 4.4E-09 9.6E-14 87.0 7.2 71 73-146 158-228 (441)
17 KOG0545 Aryl-hydrocarbon recep 98.3 2.6E-07 5.7E-12 70.8 1.8 79 57-135 9-91 (329)
18 TIGR01480 copper_res_A copper- 86.9 2.1 4.6E-05 37.3 6.3 15 73-87 80-94 (587)
19 PF07172 GRP: Glycine rich pro 81.9 0.92 2E-05 29.9 1.5 12 7-18 4-15 (95)
20 PF10518 TAT_signal: TAT (twin 76.8 3.9 8.4E-05 20.2 2.5 17 4-20 2-18 (26)
21 PF07076 DUF1344: Protein of u 68.2 15 0.00032 22.2 4.1 39 53-93 18-56 (61)
22 PRK00226 greA transcription el 57.9 14 0.0003 26.4 3.2 26 111-136 121-146 (157)
23 PF05984 Cytomega_UL20A: Cytom 56.1 46 0.00099 21.5 4.9 11 4-14 1-11 (100)
24 PHA02122 hypothetical protein 54.3 24 0.00053 20.9 3.2 20 74-94 39-58 (65)
25 PRK10081 entericidin B membran 53.8 16 0.00034 21.0 2.3 23 4-26 2-24 (48)
26 COG5510 Predicted small secret 52.0 17 0.00037 20.4 2.2 21 4-24 2-22 (44)
27 PRK15396 murein lipoprotein; P 51.4 14 0.0003 23.4 2.1 24 4-27 1-24 (78)
28 PF07172 GRP: Glycine rich pro 51.2 20 0.00043 23.6 2.8 20 1-20 1-20 (95)
29 PRK12407 flgH flagellar basal 50.5 88 0.0019 23.9 6.6 16 72-87 64-79 (221)
30 PF01346 FKBP_N: Domain amino 49.5 17 0.00036 24.5 2.4 16 49-64 109-124 (124)
31 PRK12699 flgH flagellar basal 49.2 92 0.002 24.2 6.6 16 72-87 87-102 (246)
32 PF01272 GreA_GreB: Transcript 49.1 21 0.00046 22.1 2.7 23 113-135 43-65 (77)
33 PRK09534 btuF corrinoid ABC tr 48.2 39 0.00085 27.4 4.8 20 1-20 1-20 (359)
34 PRK05892 nucleoside diphosphat 45.9 72 0.0016 22.9 5.3 25 112-136 121-145 (158)
35 TIGR01461 greB transcription e 45.7 53 0.0011 23.5 4.6 25 112-136 119-143 (156)
36 cd01090 Creatinase Creatine am 45.1 54 0.0012 24.7 4.8 53 70-129 74-135 (228)
37 COG0024 Map Methionine aminope 45.0 77 0.0017 24.8 5.7 52 71-129 85-146 (255)
38 PF05688 DUF824: Salmonella re 44.8 55 0.0012 18.6 3.7 35 71-110 7-41 (47)
39 PRK05753 nucleoside diphosphat 44.7 58 0.0013 22.7 4.6 25 112-136 91-115 (137)
40 PRK13884 conjugal transfer pep 44.1 50 0.0011 24.1 4.4 24 55-83 38-61 (178)
41 COG3521 Predicted component of 42.5 82 0.0018 22.8 5.1 17 1-17 1-17 (159)
42 PRK10540 lipoprotein; Provisio 41.9 43 0.00093 20.8 3.2 25 1-25 1-25 (72)
43 cd01089 PA2G4-like Related to 40.5 1.2E+02 0.0026 22.6 6.1 53 70-129 80-146 (228)
44 TIGR01165 cbiN cobalt transpor 40.2 26 0.00057 22.9 2.0 11 1-12 1-11 (91)
45 PF10399 UCR_Fe-S_N: Ubiquitin 39.2 41 0.0009 18.5 2.5 10 4-13 9-18 (41)
46 cd01088 MetAP2 Methionine Amin 38.7 86 0.0019 24.6 5.2 53 70-129 68-126 (291)
47 TIGR00501 met_pdase_II methion 38.7 94 0.002 24.5 5.4 53 70-129 72-130 (295)
48 PLN00044 multi-copper oxidase- 38.5 62 0.0013 28.4 4.7 33 55-87 39-78 (596)
49 PRK10523 lipoprotein involved 37.9 1.9E+02 0.0041 22.3 8.3 21 8-28 5-25 (234)
50 PRK13838 conjugal transfer pil 37.3 83 0.0018 23.0 4.6 13 71-83 49-61 (176)
51 PF07803 GSG-1: GSG1-like prot 37.2 30 0.00064 23.7 2.0 20 5-24 5-24 (118)
52 PF12071 DUF3551: Protein of u 37.0 37 0.00081 21.7 2.4 11 4-14 1-11 (82)
53 TIGR01462 greA transcription e 36.5 1E+02 0.0022 21.8 4.9 26 111-136 116-141 (151)
54 PRK08671 methionine aminopepti 36.4 1E+02 0.0022 24.2 5.3 51 71-128 70-126 (291)
55 PF08802 CytB6-F_Fe-S: Cytochr 35.9 48 0.001 18.1 2.4 16 3-18 5-20 (39)
56 PTZ00053 methionine aminopepti 35.6 73 0.0016 27.2 4.6 51 71-128 232-288 (470)
57 TIGR03042 PS_II_psbQ_bact phot 34.9 40 0.00087 23.9 2.5 23 9-31 4-26 (142)
58 PRK00809 hypothetical protein; 34.5 62 0.0013 22.9 3.4 28 112-141 24-51 (144)
59 COG4313 Protein involved in me 34.2 41 0.00088 26.9 2.7 29 1-29 1-29 (304)
60 PF15240 Pro-rich: Proline-ric 33.9 35 0.00075 25.2 2.1 22 10-31 2-23 (179)
61 PF09122 DUF1930: Domain of un 33.5 76 0.0016 19.3 3.1 22 114-135 35-56 (68)
62 PRK13159 cytochrome c-type bio 33.0 40 0.00087 24.3 2.3 46 77-122 83-138 (155)
63 PRK13150 cytochrome c-type bio 32.9 40 0.00087 24.4 2.3 44 78-121 90-144 (159)
64 COG0048 RpsL Ribosomal protein 32.6 86 0.0019 21.7 3.7 29 54-82 61-89 (129)
65 PRK01885 greB transcription el 32.1 78 0.0017 22.6 3.7 24 113-136 122-145 (157)
66 COG2332 CcmE Cytochrome c-type 31.7 45 0.00097 23.9 2.3 11 78-88 84-94 (153)
67 COG4922 Uncharacterized protei 31.2 81 0.0018 21.7 3.4 43 73-120 71-114 (129)
68 COG4704 Uncharacterized protei 30.8 51 0.0011 23.3 2.4 16 113-128 127-142 (151)
69 TIGR00495 crvDNA_42K 42K curve 30.7 1.3E+02 0.0029 24.8 5.3 52 71-129 99-164 (389)
70 PF05526 R_equi_Vir: Rhodococc 30.5 2E+02 0.0044 21.1 5.5 15 82-96 89-103 (177)
71 PRK13165 cytochrome c-type bio 30.3 42 0.00092 24.3 2.0 45 77-121 89-144 (160)
72 PRK06005 flgA flagellar basal 30.1 2.1E+02 0.0045 20.5 6.8 13 1-13 1-13 (160)
73 PRK12897 methionine aminopepti 29.7 2.1E+02 0.0045 21.7 6.0 53 70-129 82-143 (248)
74 COG4939 Major membrane immunog 29.6 1.4E+02 0.0031 20.9 4.4 19 73-91 54-72 (147)
75 COG0782 Uncharacterized conser 27.5 1.6E+02 0.0035 20.9 4.7 24 111-134 114-137 (151)
76 TIGR00500 met_pdase_I methioni 27.4 1.7E+02 0.0036 22.0 5.1 52 70-128 81-141 (247)
77 PF09610 Myco_arth_vir_N: Myco 27.1 63 0.0014 16.9 1.8 20 1-20 1-20 (33)
78 PLN03158 methionine aminopepti 26.7 1.6E+02 0.0036 24.4 5.2 52 70-128 215-275 (396)
79 PF11191 DUF2782: Protein of u 26.6 1.9E+02 0.0042 19.0 4.9 13 55-67 44-56 (105)
80 PF00819 Myotoxins: Myotoxin; 25.7 28 0.00061 18.8 0.4 17 130-146 16-32 (43)
81 PF00639 Rotamase: PPIC-type P 25.5 84 0.0018 19.9 2.7 26 107-132 57-82 (95)
82 PRK11479 hypothetical protein; 25.0 2E+02 0.0044 22.7 5.1 10 73-82 65-74 (274)
83 PRK12318 methionine aminopepti 24.9 1.8E+02 0.0039 22.9 4.9 52 70-128 123-183 (291)
84 PRK11536 6-N-hydroxylaminopuri 24.1 67 0.0015 24.5 2.3 25 57-84 141-165 (223)
85 PRK13614 lipoprotein LpqB; Pro 24.0 65 0.0014 28.2 2.4 27 1-27 1-27 (573)
86 TIGR02925 cis_trans_EpsD pepti 23.5 77 0.0017 23.7 2.5 29 109-139 189-217 (232)
87 COG3712 FecR Fe2+-dicitrate se 23.3 4.1E+02 0.0088 21.6 7.9 50 61-110 123-178 (322)
88 PRK12896 methionine aminopepti 22.9 2.7E+02 0.0058 20.9 5.5 52 70-128 88-148 (255)
89 PF12276 DUF3617: Protein of u 21.5 88 0.0019 21.9 2.4 14 75-88 101-114 (162)
90 PF04202 Mfp-3: Foot protein 3 21.2 94 0.002 19.1 2.0 14 1-14 1-14 (71)
91 TIGR02811 formate_TAT formate 21.2 1.6E+02 0.0034 17.9 3.1 9 4-12 9-17 (66)
92 cd01086 MetAP1 Methionine Amin 20.7 3.2E+02 0.007 20.2 5.5 52 70-128 73-133 (238)
93 PF12389 Peptidase_M73: Camely 20.6 3.8E+02 0.0082 20.2 6.4 14 4-17 5-18 (199)
94 COG4166 OppA ABC-type oligopep 20.5 1.5E+02 0.0033 25.5 4.0 9 1-9 1-9 (562)
95 COG2258 Uncharacterized protei 20.3 88 0.0019 23.7 2.2 27 57-86 138-164 (210)
96 PRK10882 hydrogenase 2 protein 20.2 1.2E+02 0.0026 24.5 3.1 10 4-13 1-10 (328)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.2e-29 Score=182.43 Aligned_cols=102 Identities=36% Similarity=0.590 Sum_probs=97.0
Q ss_pred cCCCceecCCceEEEEEecCCCCCCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCCccchHHHHHhcCCCcccE
Q 031721 49 ENVPMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGK 128 (154)
Q Consensus 49 ~~~~~~~~~~g~~~~~~~~G~G~~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~~~i~g~~~al~~mk~Ge~ 128 (154)
......++++|++|++++.|+|..|..+|.|.|||++++.||++||||+++++|+.|.+| ++|+||+++|.+|++|++
T Consensus 92 k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k 169 (205)
T COG0545 92 KEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGK 169 (205)
T ss_pred ccCCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCce
Confidence 346678899999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCCC
Q 031721 129 RRLYIPGPVISNTLLILHNWEEKT 152 (154)
Q Consensus 129 ~~i~ip~~~~yg~~~~~~~~~~~~ 152 (154)
++++||+++|||..+..+.|+||-
T Consensus 170 ~~l~IP~~laYG~~g~~g~Ippns 193 (205)
T COG0545 170 RKLTIPPELAYGERGVPGVIPPNS 193 (205)
T ss_pred EEEEeCchhccCcCCCCCCCCCCC
Confidence 999999999999999888899984
No 2
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4e-27 Score=152.24 Aligned_cols=94 Identities=31% Similarity=0.558 Sum_probs=90.8
Q ss_pred ceEEEEEecCCCCC-CCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCCccchHHHHHhcCCCcccEEEEEEcCCC
Q 031721 59 GLQYKDIKVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPV 137 (154)
Q Consensus 59 g~~~~~~~~G~G~~-~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~~~i~g~~~al~~mk~Ge~~~i~ip~~~ 137 (154)
|+.++++.+|+|.. |+.||.|++||++.+.||+.||||.+++.||.|.+|.+++|.||+|++..|.+||++++.|+|++
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~ 81 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDY 81 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeecccc
Confidence 68899999999965 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCC
Q 031721 138 ISNTLLILHNWEEKT 152 (154)
Q Consensus 138 ~yg~~~~~~~~~~~~ 152 (154)
|||..+..+.|+||-
T Consensus 82 aYG~~G~p~~IppNa 96 (108)
T KOG0544|consen 82 AYGPRGHPGGIPPNA 96 (108)
T ss_pred ccCCCCCCCccCCCc
Confidence 999999999999985
No 3
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.92 E-value=1.2e-24 Score=162.97 Aligned_cols=101 Identities=29% Similarity=0.403 Sum_probs=95.6
Q ss_pred CCCceecCCceEEEEEecCCCCCCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCCccchHHHHHhcCCCcccEE
Q 031721 50 NVPMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKR 129 (154)
Q Consensus 50 ~~~~~~~~~g~~~~~~~~G~G~~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~~~i~g~~~al~~mk~Ge~~ 129 (154)
.....++++|++|+++++|+|..|+.+|.|.|||++++.||++||||+.++.|+.|.++ .+|+||+++|.+|++|+++
T Consensus 94 ~~gv~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~ 171 (206)
T PRK11570 94 KEGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKW 171 (206)
T ss_pred cCCcEECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEE
Confidence 45678899999999999999999999999999999999999999999998899999997 7999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCC
Q 031721 130 RLYIPGPVISNTLLILHNWEEKT 152 (154)
Q Consensus 130 ~i~ip~~~~yg~~~~~~~~~~~~ 152 (154)
+|+||++++||+.+....|+||.
T Consensus 172 ~~~IP~~lAYG~~g~~~~Ipp~s 194 (206)
T PRK11570 172 ELTIPHELAYGERGAGASIPPFS 194 (206)
T ss_pred EEEECHHHcCCCCCCCCCcCCCC
Confidence 99999999999998878899986
No 4
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.92 E-value=5.4e-24 Score=156.05 Aligned_cols=101 Identities=22% Similarity=0.303 Sum_probs=92.6
Q ss_pred CCceecCCceEEEEEec--CCCCCCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCCccchHHHHHhcCCCcccE
Q 031721 51 VPMVTTESGLQYKDIKV--GQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGK 128 (154)
Q Consensus 51 ~~~~~~~~g~~~~~~~~--G~G~~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~~~i~g~~~al~~mk~Ge~ 128 (154)
..+.++++|++|.+++. |+|..|+.||.|.+||++++.||++|++++.. .|+.|.+|.+++++||+++|.+|++||+
T Consensus 62 ~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~ 140 (177)
T TIGR03516 62 VKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGET 140 (177)
T ss_pred CCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCE
Confidence 45588999999999976 66677999999999999999999999999864 5999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCCCCCC
Q 031721 129 RRLYIPGPVISNTLLILHNWEEKT 152 (154)
Q Consensus 129 ~~i~ip~~~~yg~~~~~~~~~~~~ 152 (154)
++|+||+++|||..+..+.|+||.
T Consensus 141 ~~~~iP~~~AYG~~g~~~~Ippns 164 (177)
T TIGR03516 141 ATFLFPSHKAYGYYGDQNKIGPNL 164 (177)
T ss_pred EEEEECHHHcCCCCCCCCCcCcCC
Confidence 999999999999998888899986
No 5
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.5e-24 Score=154.48 Aligned_cols=98 Identities=30% Similarity=0.458 Sum_probs=86.4
Q ss_pred cCCceEEEEEecCC--CCCCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCCccchHHHHHhcCCCcccEEEEEE
Q 031721 56 TESGLQYKDIKVGQ--GPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYI 133 (154)
Q Consensus 56 ~~~g~~~~~~~~G~--G~~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~~~i~g~~~al~~mk~Ge~~~i~i 133 (154)
..+.+++.++..-. ..+.+.||.+.+||++.+.||++|||||.+++|+.|.+|.+++|+|||++|.+|.+||+|++.|
T Consensus 66 ~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~I 145 (188)
T KOG0549|consen 66 PDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLII 145 (188)
T ss_pred CCCceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEec
Confidence 34566666666532 3458899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCC
Q 031721 134 PGPVISNTLLILHNWEEKTC 153 (154)
Q Consensus 134 p~~~~yg~~~~~~~~~~~~~ 153 (154)
||+++||+++..+.|+++.+
T Consensus 146 Pp~LgYG~~G~~~~IP~~A~ 165 (188)
T KOG0549|consen 146 PPHLGYGERGAPPKIPGDAV 165 (188)
T ss_pred CccccCccCCCCCCCCCCee
Confidence 99999999998888887753
No 6
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=7.6e-24 Score=158.76 Aligned_cols=96 Identities=39% Similarity=0.712 Sum_probs=90.1
Q ss_pred eecCCceEEEEEecCCCCCCCCCCEEEEEEEEEeC-CCcEEEccCCCCccEE-EEeCCCccchHHHHHhcCCCcccEEEE
Q 031721 54 VTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIP-SGQIFDSSLEKGRPYI-FRVGSGQVVKGLDEGILTMKTGGKRRL 131 (154)
Q Consensus 54 ~~~~~g~~~~~~~~G~G~~~~~gd~V~v~y~~~~~-~g~~~dss~~~~~p~~-f~lG~~~~i~g~~~al~~mk~Ge~~~i 131 (154)
.++++||+|++++.|+|..+..|+.|.|||.+++. +|++||+++.. .|+. |.+|.+.+|+||+.++.+|++|++|+|
T Consensus 116 ~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrv 194 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRV 194 (226)
T ss_pred eecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhhhccCCeeEE
Confidence 57899999999999999999999999999999997 99999999764 7888 999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCCCCCCCC
Q 031721 132 YIPGPVISNTLLILHNWEEK 151 (154)
Q Consensus 132 ~ip~~~~yg~~~~~~~~~~~ 151 (154)
+|||++|||+++.. .|.||
T Consensus 195 iIPp~lgYg~~g~~-~Ippn 213 (226)
T KOG0552|consen 195 IIPPELGYGKKGVP-EIPPN 213 (226)
T ss_pred EeCccccccccCcC-cCCCC
Confidence 99999999998865 77776
No 7
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.89 E-value=2.1e-22 Score=156.08 Aligned_cols=100 Identities=32% Similarity=0.498 Sum_probs=92.7
Q ss_pred CCCceecCCceEEEEEecCCCCCCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCCccchHHHHHhcCCCcccEE
Q 031721 50 NVPMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKR 129 (154)
Q Consensus 50 ~~~~~~~~~g~~~~~~~~G~G~~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~~~i~g~~~al~~mk~Ge~~ 129 (154)
+....++++|++|+++++|+|..|+.||.|.|||++++.||++|++++.++.|+.|.++ .+||||+++|.+|++|+++
T Consensus 138 ~~gv~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~ 215 (269)
T PRK10902 138 EKGVKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKI 215 (269)
T ss_pred CCCcEECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEE
Confidence 35578899999999999999999999999999999999999999999988899999986 7999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCC
Q 031721 130 RLYIPGPVISNTLLILHNWEEKT 152 (154)
Q Consensus 130 ~i~ip~~~~yg~~~~~~~~~~~~ 152 (154)
+|+||++++||..+.. +|+||.
T Consensus 216 ~l~IP~~laYG~~g~~-gIppns 237 (269)
T PRK10902 216 KLVIPPELAYGKAGVP-GIPANS 237 (269)
T ss_pred EEEECchhhCCCCCCC-CCCCCC
Confidence 9999999999998864 688875
No 8
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.83 E-value=5.4e-20 Score=121.65 Aligned_cols=81 Identities=35% Similarity=0.666 Sum_probs=75.3
Q ss_pred CCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCCccchHHHHHhcCCCcccEEEEEEcCCCCCCCCCC-CCCCCC
Q 031721 72 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPVISNTLLI-LHNWEE 150 (154)
Q Consensus 72 ~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~~~i~g~~~al~~mk~Ge~~~i~ip~~~~yg~~~~-~~~~~~ 150 (154)
+++.||.|.+||++++.+|++|++++..+.|+.|.+|.+++++||+++|.+|++|++++|+||++++||+.+. ..+|+|
T Consensus 4 ~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ip~ 83 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPKIPP 83 (94)
T ss_dssp SBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTTBTT
T ss_pred cCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCCcCC
Confidence 4899999999999999999999999888899999999999999999999999999999999999999998876 446877
Q ss_pred CC
Q 031721 151 KT 152 (154)
Q Consensus 151 ~~ 152 (154)
+.
T Consensus 84 ~~ 85 (94)
T PF00254_consen 84 NS 85 (94)
T ss_dssp TS
T ss_pred CC
Confidence 74
No 9
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.76 E-value=3.8e-18 Score=122.87 Aligned_cols=72 Identities=22% Similarity=0.431 Sum_probs=68.4
Q ss_pred CCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCCccchHHHHHhcCCCcccEEEEEEcCCCCCCCCC
Q 031721 72 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPVISNTLL 143 (154)
Q Consensus 72 ~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~~~i~g~~~al~~mk~Ge~~~i~ip~~~~yg~~~ 143 (154)
.++.||.|.+||++++.||++||||+..+.|+.|.+|.+++++||+++|.+|++|++++|.|||++|||+.+
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 578999999999999999999999988789999999999999999999999999999999999999999764
No 10
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=9.2e-16 Score=111.01 Aligned_cols=72 Identities=26% Similarity=0.392 Sum_probs=67.7
Q ss_pred CCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCCccchHHHHHhcCCCcccEEEEEEcCCCCCCCCC
Q 031721 72 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPVISNTLL 143 (154)
Q Consensus 72 ~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~~~i~g~~~al~~mk~Ge~~~i~ip~~~~yg~~~ 143 (154)
.++.||.|.+||+++..||++||+|.....|+.|.+|.+++++||++||.+|.+|++.++.|||+.|||.-+
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~ 73 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD 73 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence 478999999999999999999999977578999999999999999999999999999999999999999754
No 11
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.59 E-value=6.7e-15 Score=109.17 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=66.4
Q ss_pred CCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCCccchHHHHHhcCCCcccEEEEEEcCCCCCCCCC
Q 031721 72 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPVISNTLL 143 (154)
Q Consensus 72 ~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~~~i~g~~~al~~mk~Ge~~~i~ip~~~~yg~~~ 143 (154)
++++++.|++||++++.||++||+|+. ..|+.|.+|.++++|+|+++|.+|++|++++|.|||+.|||.-+
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d 72 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD 72 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 467899999999999999999999965 57999999999999999999999999999999999999999754
No 12
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=6.3e-14 Score=112.45 Aligned_cols=92 Identities=21% Similarity=0.262 Sum_probs=81.8
Q ss_pred CCceEEEEEecCCC--CCCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCC-CccchHHHHHhcCCCcccEEEEEE
Q 031721 57 ESGLQYKDIKVGQG--PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGS-GQVVKGLDEGILTMKTGGKRRLYI 133 (154)
Q Consensus 57 ~~g~~~~~~~~G~G--~~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~-~~~i~g~~~al~~mk~Ge~~~i~i 133 (154)
+.+|.++++++|.| ..|..|..|.|||.+++.++ +|+++ .-.|.|..|. ..+|.||+.+|..|++||++.|+|
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~---~~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i 158 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQR---ELRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTI 158 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceecc---ccceEEecCCccchhHHHHHHHHhcCccceEEEEe
Confidence 89999999999999 45889999999999999666 77765 2348888887 479999999999999999999999
Q ss_pred cCCCCCC-CCCCCCCCCCCC
Q 031721 134 PGPVISN-TLLILHNWEEKT 152 (154)
Q Consensus 134 p~~~~yg-~~~~~~~~~~~~ 152 (154)
+|.++|| ...++++|+||-
T Consensus 159 ~~~YayG~~~~~~p~IPPnA 178 (397)
T KOG0543|consen 159 DPKYAYGEEGGEPPLIPPNA 178 (397)
T ss_pred CcccccCCCCCCCCCCCCCc
Confidence 9999999 788999999984
No 13
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=99.01 E-value=1.4e-09 Score=89.32 Aligned_cols=73 Identities=22% Similarity=0.445 Sum_probs=64.7
Q ss_pred CCCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCCccchHHHHHhcCCCcccEEEEEEcCCCCCCCCCCCC
Q 031721 71 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPVISNTLLILH 146 (154)
Q Consensus 71 ~~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~~~i~g~~~al~~mk~Ge~~~i~ip~~~~yg~~~~~~ 146 (154)
..++.||.|++||+++. +|+.|+++ ...++.|.+|.+.+++||+++|.||++|+++.|.+++..+|+.....+
T Consensus 145 ~~~~~gD~V~v~~~~~~-dg~~~~~~--~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~~g 217 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI-DGEAFEGG--KAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEELAG 217 (408)
T ss_pred cccCCCCEEEEEEEEEE-CCEECcCC--CCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccCCC
Confidence 35789999999999986 89999886 346899999999999999999999999999999999988998766544
No 14
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=7.4e-10 Score=89.22 Aligned_cols=62 Identities=42% Similarity=0.745 Sum_probs=57.2
Q ss_pred ecCCCCC-CCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCCccchHHHHHhcCCCcccE
Q 031721 66 KVGQGPS-PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGK 128 (154)
Q Consensus 66 ~~G~G~~-~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~~~i~g~~~al~~mk~Ge~ 128 (154)
++|.|.. |..||.|.+||++++.||+.||||.+ +.|+.|.+|.+.+|.+|+.++..|+.|+.
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~g~~ 63 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKKGEA 63 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCcccccccccccccccccc
Confidence 4688876 99999999999999999999999988 78999999999999999999999998554
No 15
>PRK01490 tig trigger factor; Provisional
Probab=98.93 E-value=5.1e-09 Score=86.66 Aligned_cols=72 Identities=22% Similarity=0.435 Sum_probs=63.9
Q ss_pred CCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCCccchHHHHHhcCCCcccEEEEEEcCCCCCCCCCCCC
Q 031721 72 SPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPVISNTLLILH 146 (154)
Q Consensus 72 ~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~~~i~g~~~al~~mk~Ge~~~i~ip~~~~yg~~~~~~ 146 (154)
.++.||.|++||+++. +|+.|+++ ...++.|.+|.+.+++||+++|.||++|+++.|.+++...|+.....+
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~--~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~lag 228 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGG--KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDLAG 228 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCC--CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccCCC
Confidence 4799999999999997 89988876 346899999999999999999999999999999999888998765543
No 16
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=4.4e-09 Score=87.01 Aligned_cols=71 Identities=18% Similarity=0.414 Sum_probs=62.5
Q ss_pred CCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCCccchHHHHHhcCCCcccEEEEEEcCCCCCCCCCCCC
Q 031721 73 PPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLYIPGPVISNTLLILH 146 (154)
Q Consensus 73 ~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~~~i~g~~~al~~mk~Ge~~~i~ip~~~~yg~~~~~~ 146 (154)
++.||.|+|+|.++. ||..|.+. ..+.+.+.+|++++||||+++|.||+.|++..|.|-....|......+
T Consensus 158 a~~gD~v~IDf~g~i-Dg~~fegg--~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~LaG 228 (441)
T COG0544 158 AENGDRVTIDFEGSV-DGEEFEGG--KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEELAG 228 (441)
T ss_pred cccCCEEEEEEEEEE-cCeeccCc--cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHhCC
Confidence 899999999999985 99999886 446799999999999999999999999999998887777887765544
No 17
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2.6e-07 Score=70.78 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=69.6
Q ss_pred CCceEEEEEecCCCCC--CCCCCEEEEEEEEEeC--CCcEEEccCCCCccEEEEeCCCccchHHHHHhcCCCcccEEEEE
Q 031721 57 ESGLQYKDIKVGQGPS--PPVGFQVAANYVAMIP--SGQIFDSSLEKGRPYIFRVGSGQVVKGLDEGILTMKTGGKRRLY 132 (154)
Q Consensus 57 ~~g~~~~~~~~G~G~~--~~~gd~V~v~y~~~~~--~g~~~dss~~~~~p~~f~lG~~~~i~g~~~al~~mk~Ge~~~i~ 132 (154)
-.|++++++..|+|.- ..+|..|.+||..... .++++|+|...++|..+.+|..--+|-|+..|..|+++|.+.|.
T Consensus 9 ~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~EvaqF~ 88 (329)
T KOG0545|consen 9 VEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQFW 88 (329)
T ss_pred chhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHHhh
Confidence 4689999999999976 5589999999998773 46689999999999999999888899999999999999999887
Q ss_pred EcC
Q 031721 133 IPG 135 (154)
Q Consensus 133 ip~ 135 (154)
+..
T Consensus 89 ~d~ 91 (329)
T KOG0545|consen 89 CDT 91 (329)
T ss_pred hhh
Confidence 753
No 18
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=86.87 E-value=2.1 Score=37.26 Aligned_cols=15 Identities=13% Similarity=-0.064 Sum_probs=11.9
Q ss_pred CCCCCEEEEEEEEEe
Q 031721 73 PPVGFQVAANYVAMI 87 (154)
Q Consensus 73 ~~~gd~V~v~y~~~~ 87 (154)
++.||.|.|+++-.+
T Consensus 80 ~~~Gd~v~v~v~N~l 94 (587)
T TIGR01480 80 WREGDTVRLRVTNTL 94 (587)
T ss_pred EECCCEEEEEEEcCC
Confidence 679999999886554
No 19
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=81.89 E-value=0.92 Score=29.93 Aligned_cols=12 Identities=17% Similarity=0.185 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 031721 7 RDLIGLVLGVST 18 (154)
Q Consensus 7 ~~~l~~~l~~~a 18 (154)
+++|+++|++++
T Consensus 4 K~~llL~l~LA~ 15 (95)
T PF07172_consen 4 KAFLLLGLLLAA 15 (95)
T ss_pred hHHHHHHHHHHH
Confidence 334444333333
No 20
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=76.79 E-value=3.9 Score=20.19 Aligned_cols=17 Identities=18% Similarity=0.186 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHhh
Q 031721 4 VSRRDLIGLVLGVSTLI 20 (154)
Q Consensus 4 ~~r~~~l~~~l~~~a~~ 20 (154)
++||.+|...+++.++.
T Consensus 2 ~sRR~fLk~~~a~~a~~ 18 (26)
T PF10518_consen 2 LSRRQFLKGGAAAAAAA 18 (26)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 67888887765555444
No 21
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=68.15 E-value=15 Score=22.22 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=28.0
Q ss_pred ceecCCceEEEEEecCCCCCCCCCCEEEEEEEEEeCCCcEE
Q 031721 53 MVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMIPSGQIF 93 (154)
Q Consensus 53 ~~~~~~g~~~~~~~~G~G~~~~~gd~V~v~y~~~~~~g~~~ 93 (154)
.+++++|=.|+.-.+=+=...++|..|.|+|... +|+.+
T Consensus 18 titLdDGksy~lp~ef~~~~L~~G~kV~V~yd~~--~gk~v 56 (61)
T PF07076_consen 18 TITLDDGKSYKLPEEFDFDGLKPGMKVVVFYDEV--DGKRV 56 (61)
T ss_pred EEEecCCCEEECCCcccccccCCCCEEEEEEEcc--CCcEE
Confidence 4677888888854443444589999999999876 45443
No 22
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=57.94 E-value=14 Score=26.37 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=21.8
Q ss_pred ccchHHHHHhcCCCcccEEEEEEcCC
Q 031721 111 QVVKGLDEGILTMKTGGKRRLYIPGP 136 (154)
Q Consensus 111 ~~i~g~~~al~~mk~Ge~~~i~ip~~ 136 (154)
++..-+-.+|.|.++|+...+.+|..
T Consensus 121 S~~SPlG~aLlGk~~Gd~v~~~~p~g 146 (157)
T PRK00226 121 SIESPIARALIGKKVGDTVEVTTPGG 146 (157)
T ss_pred ccCChHHHHHhCCCCCCEEEEEcCCC
Confidence 34457889999999999999998854
No 23
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=56.12 E-value=46 Score=21.46 Aligned_cols=11 Identities=36% Similarity=0.326 Sum_probs=5.2
Q ss_pred hhHHHHHHHHH
Q 031721 4 VSRRDLIGLVL 14 (154)
Q Consensus 4 ~~r~~~l~~~l 14 (154)
|.||.+++.+|
T Consensus 1 MaRRlwiLslL 11 (100)
T PF05984_consen 1 MARRLWILSLL 11 (100)
T ss_pred CchhhHHHHHH
Confidence 34555554433
No 24
>PHA02122 hypothetical protein
Probab=54.34 E-value=24 Score=20.85 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=16.1
Q ss_pred CCCCEEEEEEEEEeCCCcEEE
Q 031721 74 PVGFQVAANYVAMIPSGQIFD 94 (154)
Q Consensus 74 ~~gd~V~v~y~~~~~~g~~~d 94 (154)
..||.|.|+|.... +|+.|-
T Consensus 39 ~~gd~v~vn~e~~~-ng~l~i 58 (65)
T PHA02122 39 DDGDEVIVNFELVV-NGKLII 58 (65)
T ss_pred cCCCEEEEEEEEEE-CCEEEE
Confidence 36899999999885 887764
No 25
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=53.81 E-value=16 Score=20.98 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHhhhccccc
Q 031721 4 VSRRDLIGLVLGVSTLILDSFDA 26 (154)
Q Consensus 4 ~~r~~~l~~~l~~~a~~l~~~~~ 26 (154)
|+|...+.+++.+++..++.|.+
T Consensus 2 mKk~i~~i~~~l~~~~~l~~CnT 24 (48)
T PRK10081 2 VKKTIAAIFSVLVLSTVLTACNT 24 (48)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhh
Confidence 55555555555555555666633
No 26
>COG5510 Predicted small secreted protein [Function unknown]
Probab=52.04 E-value=17 Score=20.36 Aligned_cols=21 Identities=10% Similarity=0.170 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHhhhccc
Q 031721 4 VSRRDLIGLVLGVSTLILDSF 24 (154)
Q Consensus 4 ~~r~~~l~~~l~~~a~~l~~~ 24 (154)
|+|.+++.+++.+.+..+++|
T Consensus 2 mk~t~l~i~~vll~s~llaaC 22 (44)
T COG5510 2 MKKTILLIALVLLASTLLAAC 22 (44)
T ss_pred chHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555556666
No 27
>PRK15396 murein lipoprotein; Provisional
Probab=51.37 E-value=14 Score=23.43 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHhhhcccccc
Q 031721 4 VSRRDLIGLVLGVSTLILDSFDAK 27 (154)
Q Consensus 4 ~~r~~~l~~~l~~~a~~l~~~~~~ 27 (154)
|+|..++..++.++.++|..|+..
T Consensus 1 m~~~kl~l~av~ls~~LLaGCAs~ 24 (78)
T PRK15396 1 MNRTKLVLGAVILGSTLLAGCSSN 24 (78)
T ss_pred CchhHHHHHHHHHHHHHHHHcCCc
Confidence 455555554444444455565544
No 28
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=51.23 E-value=20 Score=23.59 Aligned_cols=20 Identities=15% Similarity=-0.139 Sum_probs=12.1
Q ss_pred CcchhHHHHHHHHHHHHHhh
Q 031721 1 MNLVSRRDLIGLVLGVSTLI 20 (154)
Q Consensus 1 m~~~~r~~~l~~~l~~~a~~ 20 (154)
|.|..--.+.+++++++.+.
T Consensus 1 MaSK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLIS 20 (95)
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 77777777765554444443
No 29
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=50.52 E-value=88 Score=23.86 Aligned_cols=16 Identities=13% Similarity=-0.091 Sum_probs=13.4
Q ss_pred CCCCCCEEEEEEEEEe
Q 031721 72 SPPVGFQVAANYVAMI 87 (154)
Q Consensus 72 ~~~~gd~V~v~y~~~~ 87 (154)
.-+.||.|+|+.....
T Consensus 64 A~~VGDiiTV~i~E~t 79 (221)
T PRK12407 64 AYRVGDILTVILDEST 79 (221)
T ss_pred ccCCCCEEEEEEEEec
Confidence 3678999999998775
No 30
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=49.48 E-value=17 Score=24.53 Aligned_cols=16 Identities=56% Similarity=0.638 Sum_probs=11.5
Q ss_pred cCCCceecCCceEEEE
Q 031721 49 ENVPMVTTESGLQYKD 64 (154)
Q Consensus 49 ~~~~~~~~~~g~~~~~ 64 (154)
.+..++++++||+|+|
T Consensus 109 k~~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 109 KKEGVKTTESGLQYKV 124 (124)
T ss_dssp TSTTEEE-TTS-EEEE
T ss_pred CCCCCEECCCCCeeeC
Confidence 4577889999999986
No 31
>PRK12699 flgH flagellar basal body L-ring protein; Reviewed
Probab=49.22 E-value=92 Score=24.18 Aligned_cols=16 Identities=6% Similarity=0.011 Sum_probs=13.5
Q ss_pred CCCCCCEEEEEEEEEe
Q 031721 72 SPPVGFQVAANYVAMI 87 (154)
Q Consensus 72 ~~~~gd~V~v~y~~~~ 87 (154)
.-+.||.|+|......
T Consensus 87 A~~VGDiiTV~i~E~t 102 (246)
T PRK12699 87 ARQIGDTIIVLLNEKT 102 (246)
T ss_pred cccCCCEEEEEEEEec
Confidence 3678999999998876
No 32
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=49.07 E-value=21 Score=22.08 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=18.5
Q ss_pred chHHHHHhcCCCcccEEEEEEcC
Q 031721 113 VKGLDEGILTMKTGGKRRLYIPG 135 (154)
Q Consensus 113 i~g~~~al~~mk~Ge~~~i~ip~ 135 (154)
..-+-.||.|.++|+...+.+|.
T Consensus 43 ~SPLG~ALlG~~~Gd~v~~~~~~ 65 (77)
T PF01272_consen 43 DSPLGKALLGKKVGDEVEVELPG 65 (77)
T ss_dssp TSHHHHHHTT-BTT-EEEEEETT
T ss_pred cCHHHHHhcCCCCCCEEEEEeCC
Confidence 45789999999999999999985
No 33
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=48.23 E-value=39 Score=27.36 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=12.3
Q ss_pred CcchhHHHHHHHHHHHHHhh
Q 031721 1 MNLVSRRDLIGLVLGVSTLI 20 (154)
Q Consensus 1 m~~~~r~~~l~~~l~~~a~~ 20 (154)
|..|||+..+++++.+.+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (359)
T PRK09534 1 MHRMRFRSLVIVALAVTMTA 20 (359)
T ss_pred CCcchhHHHHHHHHHHHHhh
Confidence 67788877666555553333
No 34
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=45.88 E-value=72 Score=22.87 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=21.2
Q ss_pred cchHHHHHhcCCCcccEEEEEEcCC
Q 031721 112 VVKGLDEGILTMKTGGKRRLYIPGP 136 (154)
Q Consensus 112 ~i~g~~~al~~mk~Ge~~~i~ip~~ 136 (154)
...-+-.||.|-++||.+.+..|..
T Consensus 121 ~~SPlG~ALlGk~vGD~v~v~~p~g 145 (158)
T PRK05892 121 ADSPLGQALAGHQAGDTVTYSTPQG 145 (158)
T ss_pred cCCHHHHHHhCCCCCCEEEEEcCCC
Confidence 3457899999999999999988864
No 35
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=45.65 E-value=53 Score=23.49 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=21.3
Q ss_pred cchHHHHHhcCCCcccEEEEEEcCC
Q 031721 112 VVKGLDEGILTMKTGGKRRLYIPGP 136 (154)
Q Consensus 112 ~i~g~~~al~~mk~Ge~~~i~ip~~ 136 (154)
...-+-.+|.|.++|+.+.+.+|..
T Consensus 119 ~~SPlG~ALlGk~~GD~v~v~~p~g 143 (156)
T TIGR01461 119 IDSPLARALLKKEVGDEVVVNTPAG 143 (156)
T ss_pred CCCHHHHHHcCCCCCCEEEEEcCCC
Confidence 3457889999999999999988864
No 36
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=45.06 E-value=54 Score=24.69 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=33.9
Q ss_pred CCCCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCC---------ccchHHHHHhcCCCcccEE
Q 031721 70 GPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG---------QVVKGLDEGILTMKTGGKR 129 (154)
Q Consensus 70 G~~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~---------~~i~g~~~al~~mk~Ge~~ 129 (154)
...+++||.|.+++.... +|-..|.+ .+|.+|.. .+..+.+.++..+|.|-+.
T Consensus 74 ~r~l~~GD~v~~d~g~~~-~GY~ad~~------RT~~vG~~~~~~~~~~~~~~ea~~~~~~~~rpG~~~ 135 (228)
T cd01090 74 NRKVQRGDILSLNCFPMI-AGYYTALE------RTLFLDEVSDAHLKIWEANVAVHERGLELIKPGARC 135 (228)
T ss_pred CcccCCCCEEEEEEeEEE-CCEeeeeE------EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 345899999999988764 66544433 56666632 1234566666777777554
No 37
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=45.04 E-value=77 Score=24.75 Aligned_cols=52 Identities=29% Similarity=0.313 Sum_probs=37.4
Q ss_pred CCCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCCc------cc----hHHHHHhcCCCcccEE
Q 031721 71 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQ------VV----KGLDEGILTMKTGGKR 129 (154)
Q Consensus 71 ~~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~~------~i----~g~~~al~~mk~Ge~~ 129 (154)
...++||.|.++..... ||-.-|++ ..|.+|... ++ .+|..++..+|+|-+.
T Consensus 85 ~vlk~GDiv~IDvg~~~-dG~~~Dsa------~T~~vg~~~~~~~~~L~~~t~eal~~~I~~vkpG~~l 146 (255)
T COG0024 85 KVLKEGDIVKIDVGAHI-DGYIGDTA------ITFVVGEVSDEDAKRLLEATKEALYAGIEAVKPGARL 146 (255)
T ss_pred cccCCCCEEEEEEEEEE-CCeeeeEE------EEEECCCCChHHHHHHHHHHHHHHHHHHHhccCCCCH
Confidence 34889999999998886 88777765 778888421 33 4677777777777653
No 38
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=44.81 E-value=55 Score=18.59 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=26.9
Q ss_pred CCCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCC
Q 031721 71 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG 110 (154)
Q Consensus 71 ~~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~ 110 (154)
.+++.|+.+.+..+.++.+|..+. +.+|.+..|.+
T Consensus 7 akaK~Ge~I~ltVt~kda~G~pv~-----n~~f~l~r~~~ 41 (47)
T PF05688_consen 7 AKAKVGETIPLTVTVKDANGNPVP-----NAPFTLTRGDA 41 (47)
T ss_pred hheecCCeEEEEEEEECCCCCCcC-----CceEEEEecCc
Confidence 458899999999999988887764 34777777654
No 39
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=44.75 E-value=58 Score=22.72 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=21.2
Q ss_pred cchHHHHHhcCCCcccEEEEEEcCC
Q 031721 112 VVKGLDEGILTMKTGGKRRLYIPGP 136 (154)
Q Consensus 112 ~i~g~~~al~~mk~Ge~~~i~ip~~ 136 (154)
+..-+-.||.|.++|+...+..|..
T Consensus 91 i~SPlG~ALlG~~~Gd~v~v~~p~G 115 (137)
T PRK05753 91 VLAPVGAALLGLSVGQSIDWPLPGG 115 (137)
T ss_pred ccCHHHHHHcCCCCCCEEEEECCCC
Confidence 4567899999999999999888753
No 40
>PRK13884 conjugal transfer peptidase TraF; Provisional
Probab=44.09 E-value=50 Score=24.13 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=16.4
Q ss_pred ecCCceEEEEEecCCCCCCCCCCEEEEEE
Q 031721 55 TTESGLQYKDIKVGQGPSPPVGFQVAANY 83 (154)
Q Consensus 55 ~~~~g~~~~~~~~G~G~~~~~gd~V~v~y 83 (154)
..|-|++... ...++.||.|.++-
T Consensus 38 S~P~glY~~~-----~~~~~~Gd~V~f~~ 61 (178)
T PRK13884 38 SIPVGLYWTS-----SAPVEKGAYVLFCP 61 (178)
T ss_pred CCcceEEEEe-----CCCCCCCCEEEEeC
Confidence 4566777642 23588999998863
No 41
>COG3521 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.51 E-value=82 Score=22.79 Aligned_cols=17 Identities=29% Similarity=0.116 Sum_probs=8.3
Q ss_pred CcchhHHHHHHHHHHHH
Q 031721 1 MNLVSRRDLIGLVLGVS 17 (154)
Q Consensus 1 m~~~~r~~~l~~~l~~~ 17 (154)
|+..+|..+++++++++
T Consensus 1 M~~~~~a~~~l~al~~~ 17 (159)
T COG3521 1 MNSSRKAVLALFALLVL 17 (159)
T ss_pred CchhHHHHHHHHHHHHh
Confidence 56444444444444444
No 42
>PRK10540 lipoprotein; Provisional
Probab=41.88 E-value=43 Score=20.85 Aligned_cols=25 Identities=12% Similarity=0.119 Sum_probs=11.8
Q ss_pred CcchhHHHHHHHHHHHHHhhhcccc
Q 031721 1 MNLVSRRDLIGLVLGVSTLILDSFD 25 (154)
Q Consensus 1 m~~~~r~~~l~~~l~~~a~~l~~~~ 25 (154)
|--++||.+..+++.++++.++.|.
T Consensus 1 ~~~~~kr~~~~~~~~~~a~~L~gC~ 25 (72)
T PRK10540 1 MFVTSKKMAAAVLAITLAMSLSACS 25 (72)
T ss_pred CchHHHHHHHHHHHHHHHHHHhccC
Confidence 3334455444444444445555553
No 43
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=40.54 E-value=1.2e+02 Score=22.64 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=34.5
Q ss_pred CCCCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCCc-------c-------chHHHHHhcCCCcccEE
Q 031721 70 GPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQ-------V-------VKGLDEGILTMKTGGKR 129 (154)
Q Consensus 70 G~~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~~-------~-------i~g~~~al~~mk~Ge~~ 129 (154)
...++.||.|.+++-... +|-.-|.+ .+|.+|... . ..+.+.++..+|+|-+.
T Consensus 80 ~~~l~~Gd~v~iD~g~~~-~GY~sD~t------RT~~vG~~~~~~~~~~~~~~~~~~~ea~~~~~~~~kpG~~~ 146 (228)
T cd01089 80 TYTLKDGDVVKIDLGCHI-DGYIAVVA------HTIVVGAEAETPVTGKKADVIAAAHYALEAALRLLRPGNQN 146 (228)
T ss_pred CcccCCCCEEEEEEEEEE-CCEEEEEE------EEEEeCCcCccccchHHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 345899999999987765 77554443 456666321 1 24566777788888653
No 44
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=40.20 E-value=26 Score=22.88 Aligned_cols=11 Identities=9% Similarity=0.066 Sum_probs=5.6
Q ss_pred CcchhHHHHHHH
Q 031721 1 MNLVSRRDLIGL 12 (154)
Q Consensus 1 m~~~~r~~~l~~ 12 (154)
|+ |+|..+|.+
T Consensus 1 m~-~~~~~~ll~ 11 (91)
T TIGR01165 1 MS-MKKTIWLLA 11 (91)
T ss_pred CC-cchhHHHHH
Confidence 66 555554443
No 45
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=39.17 E-value=41 Score=18.49 Aligned_cols=10 Identities=30% Similarity=0.680 Sum_probs=5.1
Q ss_pred hhHHHHHHHH
Q 031721 4 VSRRDLIGLV 13 (154)
Q Consensus 4 ~~r~~~l~~~ 13 (154)
..||.+|.++
T Consensus 9 ~~RRdFL~~a 18 (41)
T PF10399_consen 9 PTRRDFLTIA 18 (41)
T ss_dssp -HHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 4566666443
No 46
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=38.69 E-value=86 Score=24.61 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=34.9
Q ss_pred CCCCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCC------ccchHHHHHhcCCCcccEE
Q 031721 70 GPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG------QVVKGLDEGILTMKTGGKR 129 (154)
Q Consensus 70 G~~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~------~~i~g~~~al~~mk~Ge~~ 129 (154)
...+++||.|.++.-... ||-.-|.+ .+|.+|.. ....+++.++..||+|-+.
T Consensus 68 ~~~l~~GDvV~iD~G~~~-dGY~sD~a------rT~~vg~~~~~l~ea~~~A~~~ai~~ikPG~~~ 126 (291)
T cd01088 68 DTVLKEGDVVKLDFGAHV-DGYIADSA------FTVDFDPKYDDLLEAAKEALNAAIKEAGPDVRL 126 (291)
T ss_pred CcccCCCCEEEEEEEEEE-CCEEEEEE------EEEecChhHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 345899999999987654 77655544 45566642 1235677777777777654
No 47
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=38.65 E-value=94 Score=24.50 Aligned_cols=53 Identities=19% Similarity=0.203 Sum_probs=34.5
Q ss_pred CCCCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCC--cc----chHHHHHhcCCCcccEE
Q 031721 70 GPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG--QV----VKGLDEGILTMKTGGKR 129 (154)
Q Consensus 70 G~~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~--~~----i~g~~~al~~mk~Ge~~ 129 (154)
...+++||.|.+++-... ||-.-|.+ .+|.+|.. .+ ..+++.++..+|+|-+.
T Consensus 72 ~~~l~~GDvV~iD~G~~~-dGY~aD~a------rT~~vG~~~~~l~~a~~~A~~aai~~~kPGv~~ 130 (295)
T TIGR00501 72 KTVFKDGDVVKLDLGAHV-DGYIADTA------ITVDLGDQYDNLVKAAKDALYTAIKEIRAGVRV 130 (295)
T ss_pred CccCCCCCEEEEEEeEEE-CCEEEEEE------EEEEeCcHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 345899999999987664 77655554 56666642 22 34566666777777553
No 48
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=38.48 E-value=62 Score=28.44 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=20.7
Q ss_pred ecCCc--eE-EEEEecC--CCCC--CCCCCEEEEEEEEEe
Q 031721 55 TTESG--LQ-YKDIKVG--QGPS--PPVGFQVAANYVAMI 87 (154)
Q Consensus 55 ~~~~g--~~-~~~~~~G--~G~~--~~~gd~V~v~y~~~~ 87 (154)
..+.| .+ ..+...| .|.. +..||.|.|+..-.+
T Consensus 39 ~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L 78 (596)
T PLN00044 39 AAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNAL 78 (596)
T ss_pred EccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCC
Confidence 35666 33 3444555 3555 679999999876654
No 49
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=37.95 E-value=1.9e+02 Score=22.33 Aligned_cols=21 Identities=10% Similarity=0.186 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhhhccccccc
Q 031721 8 DLIGLVLGVSTLILDSFDAKG 28 (154)
Q Consensus 8 ~~l~~~l~~~a~~l~~~~~~~ 28 (154)
.++.+++++..+.|..|....
T Consensus 5 ~~~~~~~a~~l~~l~gC~~~~ 25 (234)
T PRK10523 5 AIITALAAAGLFTLMGCNNRA 25 (234)
T ss_pred HHHHHHHHHHHHHhhccCCcc
Confidence 344444444444555555444
No 50
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=37.30 E-value=83 Score=22.95 Aligned_cols=13 Identities=23% Similarity=-0.067 Sum_probs=10.5
Q ss_pred CCCCCCCEEEEEE
Q 031721 71 PSPPVGFQVAANY 83 (154)
Q Consensus 71 ~~~~~gd~V~v~y 83 (154)
..++.||.|.++.
T Consensus 49 ~~~~rGDiVvf~~ 61 (176)
T PRK13838 49 RPVAVGDLVFICP 61 (176)
T ss_pred CCCCCCcEEEEEC
Confidence 5689999998873
No 51
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=37.22 E-value=30 Score=23.71 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHhhhccc
Q 031721 5 SRRDLIGLVLGVSTLILDSF 24 (154)
Q Consensus 5 ~r~~~l~~~l~~~a~~l~~~ 24 (154)
|+|++|+++|..+|++++..
T Consensus 5 ~~Ra~Ls~~ln~LAL~~S~t 24 (118)
T PF07803_consen 5 RQRALLSLILNLLALAFSTT 24 (118)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 44556666666666555433
No 52
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=37.01 E-value=37 Score=21.67 Aligned_cols=11 Identities=36% Similarity=0.356 Sum_probs=5.7
Q ss_pred hhHHHHHHHHH
Q 031721 4 VSRRDLIGLVL 14 (154)
Q Consensus 4 ~~r~~~l~~~l 14 (154)
||+..+..+++
T Consensus 1 MR~~~~aa~a~ 11 (82)
T PF12071_consen 1 MRRLLLAALAL 11 (82)
T ss_pred ChhHHHHHHHH
Confidence 45555555444
No 53
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=36.55 E-value=1e+02 Score=21.75 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=22.0
Q ss_pred ccchHHHHHhcCCCcccEEEEEEcCC
Q 031721 111 QVVKGLDEGILTMKTGGKRRLYIPGP 136 (154)
Q Consensus 111 ~~i~g~~~al~~mk~Ge~~~i~ip~~ 136 (154)
++..-+-.+|.|.++|+...+..|..
T Consensus 116 S~~SPlG~ALlG~~~Gd~v~v~~p~g 141 (151)
T TIGR01462 116 SIDSPLGKALIGKKVGDVVEVQTPKG 141 (151)
T ss_pred cCCCHHHHHHcCCCCCCEEEEEeCCC
Confidence 34567999999999999999988854
No 54
>PRK08671 methionine aminopeptidase; Provisional
Probab=36.41 E-value=1e+02 Score=24.17 Aligned_cols=51 Identities=22% Similarity=0.274 Sum_probs=33.5
Q ss_pred CCCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCC--c----cchHHHHHhcCCCcccE
Q 031721 71 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG--Q----VVKGLDEGILTMKTGGK 128 (154)
Q Consensus 71 ~~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~--~----~i~g~~~al~~mk~Ge~ 128 (154)
..+++||.|.+++-... ||-..|.+ .+|.+|.. . ...+++.++..+|+|-+
T Consensus 70 ~~l~~GDvV~iD~G~~~-dGY~aD~a------rT~~vG~~~~~l~~a~~~a~~aai~~ikpG~~ 126 (291)
T PRK08671 70 RVFPEGDVVKLDLGAHV-DGYIADTA------VTVDLGGKYEDLVEASEEALEAAIEVVRPGVS 126 (291)
T ss_pred cccCCCCEEEEEEeEEE-CCEEEEEE------EEEEeChhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45899999999987654 77665654 45666632 1 23456666777777754
No 55
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=35.93 E-value=48 Score=18.12 Aligned_cols=16 Identities=44% Similarity=0.650 Sum_probs=9.7
Q ss_pred chhHHHHHHHHHHHHH
Q 031721 3 LVSRRDLIGLVLGVST 18 (154)
Q Consensus 3 ~~~r~~~l~~~l~~~a 18 (154)
.|.||.++-++++.+.
T Consensus 5 dm~RR~lmN~ll~Gav 20 (39)
T PF08802_consen 5 DMSRRQLMNLLLGGAV 20 (39)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHhhH
Confidence 4778888766544443
No 56
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=35.63 E-value=73 Score=27.18 Aligned_cols=51 Identities=10% Similarity=0.158 Sum_probs=34.7
Q ss_pred CCCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCC--c----cchHHHHHhcCCCcccE
Q 031721 71 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG--Q----VVKGLDEGILTMKTGGK 128 (154)
Q Consensus 71 ~~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~--~----~i~g~~~al~~mk~Ge~ 128 (154)
..++.||.|.|++-... ||-..|++ ++|.+|.. . +..+.+.|+..++.|-+
T Consensus 232 ~vLk~GDvVkID~G~~v-dGYiaD~A------rTv~vg~~~~~L~eAv~eA~~aaI~~~kpGv~ 288 (470)
T PTZ00053 232 TVLTYDDVCKLDFGTHV-NGRIIDCA------FTVAFNPKYDPLLQATKDATNTGIKEAGIDVR 288 (470)
T ss_pred cEecCCCeEEEEEeEEE-CCEEEeEE------EEEEeCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34899999999998775 88877765 45556631 1 23456666666666654
No 57
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=34.91 E-value=40 Score=23.91 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhhcccccccCCC
Q 031721 9 LIGLVLGVSTLILDSFDAKGAGL 31 (154)
Q Consensus 9 ~l~~~l~~~a~~l~~~~~~~~~~ 31 (154)
+++++|++++.+|.+|..+....
T Consensus 4 ~~s~~Lv~~~~~Lvsc~~p~~~~ 26 (142)
T TIGR03042 4 LASLLLVLLLTFLVSCSGPAAAV 26 (142)
T ss_pred HHHHHHHHHHHHHHHcCCCcccC
Confidence 55555555555566666655543
No 58
>PRK00809 hypothetical protein; Provisional
Probab=34.53 E-value=62 Score=22.86 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=21.7
Q ss_pred cchHHHHHhcCCCcccEEEEEEcCCCCCCC
Q 031721 112 VVKGLDEGILTMKTGGKRRLYIPGPVISNT 141 (154)
Q Consensus 112 ~i~g~~~al~~mk~Ge~~~i~ip~~~~yg~ 141 (154)
+..+-..-|..|++||...+|.+.. ||+
T Consensus 24 ~~~~~rn~lr~Mk~GD~v~fYhs~~--~~~ 51 (144)
T PRK00809 24 VPERYKNTIEKVKPGDKLIIYVSQE--YGA 51 (144)
T ss_pred cchhhhhHHhhCCCCCEEEEEECCc--cCC
Confidence 4455666777899999999999975 553
No 59
>COG4313 Protein involved in meta-pathway of phenol degradation [Energy production and conversion]
Probab=34.19 E-value=41 Score=26.87 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=18.5
Q ss_pred CcchhHHHHHHHHHHHHHhhhcccccccC
Q 031721 1 MNLVSRRDLIGLVLGVSTLILDSFDAKGA 29 (154)
Q Consensus 1 m~~~~r~~~l~~~l~~~a~~l~~~~~~~~ 29 (154)
|+.|+-+.+..++++++++|+...++...
T Consensus 1 ~r~~~~~lla~~~~~~aa~c~~a~~a~~~ 29 (304)
T COG4313 1 MRVMRSKLLAALVVLLAAACLGAAAAAAA 29 (304)
T ss_pred CccchhhHHHHHHHHHHHHhhhhhhhhhc
Confidence 67777777666666666666655544444
No 60
>PF15240 Pro-rich: Proline-rich
Probab=33.91 E-value=35 Score=25.18 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=10.4
Q ss_pred HHHHHHHHHhhhcccccccCCC
Q 031721 10 IGLVLGVSTLILDSFDAKGAGL 31 (154)
Q Consensus 10 l~~~l~~~a~~l~~~~~~~~~~ 31 (154)
|+++|+|+.++|+++-...+..
T Consensus 2 LlVLLSvALLALSSAQ~~dEdv 23 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQSTDEDV 23 (179)
T ss_pred hhHHHHHHHHHhhhcccccccc
Confidence 3344455555555554444443
No 61
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=33.52 E-value=76 Score=19.30 Aligned_cols=22 Identities=14% Similarity=0.436 Sum_probs=17.2
Q ss_pred hHHHHHhcCCCcccEEEEEEcC
Q 031721 114 KGLDEGILTMKTGGKRRLYIPG 135 (154)
Q Consensus 114 ~g~~~al~~mk~Ge~~~i~ip~ 135 (154)
+.+..|+.-|..||++.++..+
T Consensus 35 ~El~sA~~HlH~GEkA~V~FkS 56 (68)
T PF09122_consen 35 AELKSALVHLHIGEKAQVFFKS 56 (68)
T ss_dssp HHHHHHHTT-BTT-EEEEEETT
T ss_pred HHHHHHHHHhhcCceeEEEEec
Confidence 5789999999999999988754
No 62
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=33.00 E-value=40 Score=24.26 Aligned_cols=46 Identities=15% Similarity=0.334 Sum_probs=23.5
Q ss_pred CEEEEEEEEEeCC------CcEEEccCCCCc----cEEEEeCCCccchHHHHHhcC
Q 031721 77 FQVAANYVAMIPS------GQIFDSSLEKGR----PYIFRVGSGQVVKGLDEGILT 122 (154)
Q Consensus 77 d~V~v~y~~~~~~------g~~~dss~~~~~----p~~f~lG~~~~i~g~~~al~~ 122 (154)
..|.|+|++-+.| |-+....++.+. .+--......+++...++|..
T Consensus 83 ~~v~V~Y~GilPDlFrEGqgVVaeG~~~~g~F~A~~vLAKHde~YmP~Ev~~al~~ 138 (155)
T PRK13159 83 AATQVEYTGILPDLFRDNQSVIANGRMQGGRFVANEVLAKHDETYMPKELKDAMAE 138 (155)
T ss_pred cEEEEEEccCCCccccCCCeEEEEEEEcCCEEEEeEEEecCCCcCCCHHHHHHHHh
Confidence 3678888876533 334444443220 111112334567778877764
No 63
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=32.91 E-value=40 Score=24.39 Aligned_cols=44 Identities=18% Similarity=0.423 Sum_probs=23.0
Q ss_pred EEEEEEEEEeCC------CcEEEccCCCCccEE-----EEeCCCccchHHHHHhc
Q 031721 78 QVAANYVAMIPS------GQIFDSSLEKGRPYI-----FRVGSGQVVKGLDEGIL 121 (154)
Q Consensus 78 ~V~v~y~~~~~~------g~~~dss~~~~~p~~-----f~lG~~~~i~g~~~al~ 121 (154)
.|.|+|++-+.| |-+....+..+..|. -......++|...++|.
T Consensus 90 ~v~V~Y~GilPDlFrEG~gVVveG~~~~~g~F~A~evLAKhdekYmPpEv~~al~ 144 (159)
T PRK13150 90 SVTVSYEGILPDLFREGQGVVVQGTLEKGNHVLAHEVLAKHDENYTPPEVEKAMQ 144 (159)
T ss_pred EEEEEEeccCCccccCCCeEEEEEEECCCCEEEEeEEEeCCCCCCCCHHHHHHHH
Confidence 688888886532 333444443322221 11223456777777775
No 64
>COG0048 RpsL Ribosomal protein S12 [Translation, ribosomal structure and biogenesis]
Probab=32.60 E-value=86 Score=21.74 Aligned_cols=29 Identities=17% Similarity=0.116 Sum_probs=24.5
Q ss_pred eecCCceEEEEEecCCCCCCCCCCEEEEE
Q 031721 54 VTTESGLQYKDIKVGQGPSPPVGFQVAAN 82 (154)
Q Consensus 54 ~~~~~g~~~~~~~~G~G~~~~~gd~V~v~ 82 (154)
+..-+|..+.-..+|+|.-++++|.|.|.
T Consensus 61 VrL~NG~~VtAyiPg~Gh~lqEH~~Vli~ 89 (129)
T COG0048 61 VRLINGKEVTAYIPGEGHNLQEHSEVLIR 89 (129)
T ss_pred EEeeCCcEEEEEcCCCCccccccCEEEEe
Confidence 44458999999999999999999999774
No 65
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=32.08 E-value=78 Score=22.65 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=20.9
Q ss_pred chHHHHHhcCCCcccEEEEEEcCC
Q 031721 113 VKGLDEGILTMKTGGKRRLYIPGP 136 (154)
Q Consensus 113 i~g~~~al~~mk~Ge~~~i~ip~~ 136 (154)
..-+-.+|.|-++|+...+.+|..
T Consensus 122 ~SPlG~ALlGk~vGd~v~v~~p~g 145 (157)
T PRK01885 122 DSPMARALLKKEVGDEVTVNTPAG 145 (157)
T ss_pred cCHHHHHHhCCCCCCEEEEEcCCC
Confidence 457889999999999999988864
No 66
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=31.73 E-value=45 Score=23.91 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=7.4
Q ss_pred EEEEEEEEEeC
Q 031721 78 QVAANYVAMIP 88 (154)
Q Consensus 78 ~V~v~y~~~~~ 88 (154)
.|.|.|++-+.
T Consensus 84 ~v~V~Y~GiLP 94 (153)
T COG2332 84 SVTVSYEGILP 94 (153)
T ss_pred eEEEEEeccCc
Confidence 57777777653
No 67
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.20 E-value=81 Score=21.68 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=24.6
Q ss_pred CCCCCEEEEEEEEEeCC-CcEEEccCCCCccEEEEeCCCccchHHHHHh
Q 031721 73 PPVGFQVAANYVAMIPS-GQIFDSSLEKGRPYIFRVGSGQVVKGLDEGI 120 (154)
Q Consensus 73 ~~~gd~V~v~y~~~~~~-g~~~dss~~~~~p~~f~lG~~~~i~g~~~al 120 (154)
+..||.|.+||.-+... |..-.-+ -=.|.+-+|...+-|+-..
T Consensus 71 iadGdLV~vh~hqt~~~pg~~~~v~-----~DtfR~ddgkivEHWDviq 114 (129)
T COG4922 71 IADGDLVTVHYHQTVSEPGSYTTVT-----FDTFRIDDGKIVEHWDVIQ 114 (129)
T ss_pred eccCCEEEEEEeeeeCCCCcceeEE-----EEEEEeeCCceeeccchhh
Confidence 67899999999887643 3321111 1124444455556666544
No 68
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.77 E-value=51 Score=23.28 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=9.3
Q ss_pred chHHHHHhcCCCcccE
Q 031721 113 VKGLDEGILTMKTGGK 128 (154)
Q Consensus 113 i~g~~~al~~mk~Ge~ 128 (154)
.|.|..+-..++-|..
T Consensus 127 ~PaF~dAAf~v~~~~t 142 (151)
T COG4704 127 PPAFSDAAFTVTGGST 142 (151)
T ss_pred CCcccceeEEEecCCe
Confidence 5667666655554443
No 69
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=30.69 E-value=1.3e+02 Score=24.83 Aligned_cols=52 Identities=21% Similarity=0.153 Sum_probs=35.6
Q ss_pred CCCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCC----------cc----chHHHHHhcCCCcccEE
Q 031721 71 PSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG----------QV----VKGLDEGILTMKTGGKR 129 (154)
Q Consensus 71 ~~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~----------~~----i~g~~~al~~mk~Ge~~ 129 (154)
..++.||.|.|++-... ||-.-|.+ .+|.+|.. .+ ..+++.++..+++|-+.
T Consensus 99 ~~Lk~GDvVkIDlG~~i-dGY~aD~a------rTv~vG~~~~~~~t~~~~~l~~aa~~A~~aai~~vkPG~~~ 164 (389)
T TIGR00495 99 YILKEGDVVKIDLGCHI-DGFIALVA------HTFVVGVAQEEPVTGRKADVIAAAHLAAEAALRLVKPGNTN 164 (389)
T ss_pred cCcCCCCEEEEEEEEEE-CCEEEEEE------EEEEECCcccccCCHHHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 44899999999998775 88766654 56677631 11 24566777777877654
No 70
>PF05526 R_equi_Vir: Rhodococcus equi virulence-associated protein; InterPro: IPR008810 This family consists of several virulence-associated proteins from Corynebacterium equii (Rhodococcus equi). R. equi is an important pulmonary pathogen of foals and is increasingly isolated from pneumonic infections and other infections in Homo sapiens immunodeficiency virus-infected patients. Isolates from foals possess a large virulence plasmid, varying in size from 80 to 90 kb. Isolates lacking the plasmid are avirulent to foals. Little is known about the function of the plasmid apart from its encoding a virulence associated surface protein [].
Probab=30.49 E-value=2e+02 Score=21.10 Aligned_cols=15 Identities=20% Similarity=0.616 Sum_probs=8.9
Q ss_pred EEEEEeCCCcEEEcc
Q 031721 82 NYVAMIPSGQIFDSS 96 (154)
Q Consensus 82 ~y~~~~~~g~~~dss 96 (154)
|+......|+.|+..
T Consensus 89 ~~~v~v~gGktF~Gd 103 (177)
T PF05526_consen 89 HFSVTVDGGKTFDGD 103 (177)
T ss_pred EEEEEeCCCeEEecc
Confidence 444444577888753
No 71
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=30.31 E-value=42 Score=24.28 Aligned_cols=45 Identities=18% Similarity=0.335 Sum_probs=22.2
Q ss_pred CEEEEEEEEEeCC------CcEEEccCCCCccE-----EEEeCCCccchHHHHHhc
Q 031721 77 FQVAANYVAMIPS------GQIFDSSLEKGRPY-----IFRVGSGQVVKGLDEGIL 121 (154)
Q Consensus 77 d~V~v~y~~~~~~------g~~~dss~~~~~p~-----~f~lG~~~~i~g~~~al~ 121 (154)
..|.|+|++-+.| |-+....+..+..| --......++|...++|.
T Consensus 89 ~~v~V~Y~GilPDlFrEG~gVVveG~~~~~g~F~A~~vLAKhdekYmPpEv~~al~ 144 (160)
T PRK13165 89 GSVTVTYEGILPDLFREGQGIVAQGVLEEGNHIEAKEVLAKHDENYTPPEVEEAMK 144 (160)
T ss_pred eEEEEEEcccCCccccCCCeEEEEEEECCCCeEEEEEEEecCCCCCCCHHHHHHHH
Confidence 3578888876532 23344444332111 111223455677777665
No 72
>PRK06005 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=30.09 E-value=2.1e+02 Score=20.50 Aligned_cols=13 Identities=8% Similarity=0.064 Sum_probs=8.6
Q ss_pred CcchhHHHHHHHH
Q 031721 1 MNLVSRRDLIGLV 13 (154)
Q Consensus 1 m~~~~r~~~l~~~ 13 (154)
|++|+.+.++..+
T Consensus 1 ~~~~~~~~~~~~~ 13 (160)
T PRK06005 1 MARMRAISALARL 13 (160)
T ss_pred CchHHHHHHHHHH
Confidence 6778777766543
No 73
>PRK12897 methionine aminopeptidase; Reviewed
Probab=29.72 E-value=2.1e+02 Score=21.65 Aligned_cols=53 Identities=25% Similarity=0.329 Sum_probs=34.7
Q ss_pred CCCCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCCc---------cchHHHHHhcCCCcccEE
Q 031721 70 GPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSGQ---------VVKGLDEGILTMKTGGKR 129 (154)
Q Consensus 70 G~~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~~---------~i~g~~~al~~mk~Ge~~ 129 (154)
+..++.||.|.+++-... +|-.-|.+ .+|.+|... +..+.+.++..+++|-+.
T Consensus 82 ~~~l~~Gd~V~iD~g~~~-~GY~sD~t------RT~~vG~~s~~~~~~~~~~~~a~~~~i~~~kpG~~~ 143 (248)
T PRK12897 82 DVPLTEGDIVTIDMVVNL-NGGLSDSA------WTYRVGKVSDEAEKLLLVAENALYKGIDQAVIGNRV 143 (248)
T ss_pred CcccCCCCEEEEEeeEEE-CCEEEEEE------EEEEcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 445899999999987764 66555544 556666421 234666677778887543
No 74
>COG4939 Major membrane immunogen, membrane-anchored lipoprotein [Function unknown]
Probab=29.55 E-value=1.4e+02 Score=20.86 Aligned_cols=19 Identities=26% Similarity=0.116 Sum_probs=14.7
Q ss_pred CCCCCEEEEEEEEEeCCCc
Q 031721 73 PPVGFQVAANYVAMIPSGQ 91 (154)
Q Consensus 73 ~~~gd~V~v~y~~~~~~g~ 91 (154)
++.|..|.+.|.-+..+|+
T Consensus 54 i~dGKiv~~~ydy~~k~G~ 72 (147)
T COG4939 54 IQDGKIVACTYDYRDKKGN 72 (147)
T ss_pred EeCCEEEEEEeeeecCCCC
Confidence 6678888888887776665
No 75
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=27.55 E-value=1.6e+02 Score=20.87 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.4
Q ss_pred ccchHHHHHhcCCCcccEEEEEEc
Q 031721 111 QVVKGLDEGILTMKTGGKRRLYIP 134 (154)
Q Consensus 111 ~~i~g~~~al~~mk~Ge~~~i~ip 134 (154)
++..-+-.+|.|.++|+...+..|
T Consensus 114 S~~SPig~aLlGk~vGd~v~v~~p 137 (151)
T COG0782 114 SVDSPLGRALLGKKVGDTVEVNTP 137 (151)
T ss_pred eccCHHHHHHhCCCCCCEEEEecC
Confidence 344568899999999999999888
No 76
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=27.43 E-value=1.7e+02 Score=21.99 Aligned_cols=52 Identities=21% Similarity=0.132 Sum_probs=34.1
Q ss_pred CCCCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCC---------ccchHHHHHhcCCCcccE
Q 031721 70 GPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG---------QVVKGLDEGILTMKTGGK 128 (154)
Q Consensus 70 G~~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~---------~~i~g~~~al~~mk~Ge~ 128 (154)
...++.||.|.+++-... +|-.-|.+ .+|.+|.. .+..+++.++..+|.|-+
T Consensus 81 ~~~l~~Gd~v~iD~g~~~-~gY~aD~~------RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~ 141 (247)
T TIGR00500 81 KKVLKDGDIVNIDVGVIY-DGYHGDTA------KTFLVGKISPEAEKLLECTEESLYKAIEEAKPGNR 141 (247)
T ss_pred CcccCCCCEEEEEEEEEE-CCEEEEEE------EEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 445899999999998765 66544443 45666631 123456677777777744
No 77
>PF09610 Myco_arth_vir_N: Mycoplasma virulence signal region (Myco_arth_vir_N); InterPro: IPR011732 This entry represents the N-terminal region of a family of large, virulence-associated proteins in Mycoplasma arthritidis and smaller proteins in Mycoplasma capricolum. It includes a probable signal sequence or signal anchor, which, in most instances, has four consecutive Lys residues before the hydrophobic stretch.
Probab=27.11 E-value=63 Score=16.89 Aligned_cols=20 Identities=15% Similarity=0.406 Sum_probs=8.4
Q ss_pred CcchhHHHHHHHHHHHHHhh
Q 031721 1 MNLVSRRDLIGLVLGVSTLI 20 (154)
Q Consensus 1 m~~~~r~~~l~~~l~~~a~~ 20 (154)
|+-.+++...-++++..+++
T Consensus 1 Ms~~KKKK~~Il~la~~a~l 20 (33)
T PF09610_consen 1 MSFLKKKKIKILTLALTASL 20 (33)
T ss_pred CchhhhhhhhhhhHHHHHHH
Confidence 55544444333333333333
No 78
>PLN03158 methionine aminopeptidase; Provisional
Probab=26.70 E-value=1.6e+02 Score=24.41 Aligned_cols=52 Identities=21% Similarity=0.152 Sum_probs=35.2
Q ss_pred CCCCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCC---------ccchHHHHHhcCCCcccE
Q 031721 70 GPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG---------QVVKGLDEGILTMKTGGK 128 (154)
Q Consensus 70 G~~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~---------~~i~g~~~al~~mk~Ge~ 128 (154)
...+++||.|.++...+. +|-.-|.+ .+|.+|.- ....+++.++..+|.|-+
T Consensus 215 ~r~L~~GDiV~iDvg~~~-~GY~aD~t------RT~~VG~~~~e~~~l~e~~~eal~~aI~~vkPGv~ 275 (396)
T PLN03158 215 ARKLEDGDIVNVDVTVYY-KGCHGDLN------ETFFVGNVDEASRQLVKCTYECLEKAIAIVKPGVR 275 (396)
T ss_pred CccCCCCCEEEEEEeEEE-CCEEEeEE------eEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 345899999999998875 77554443 45666631 134567777777888744
No 79
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=26.62 E-value=1.9e+02 Score=18.97 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=6.5
Q ss_pred ecCCceEEEEEec
Q 031721 55 TTESGLQYKDIKV 67 (154)
Q Consensus 55 ~~~~g~~~~~~~~ 67 (154)
..+.+.+++..+.
T Consensus 44 ~~~~~~~ieEyRv 56 (105)
T PF11191_consen 44 IEDGGSTIEEYRV 56 (105)
T ss_pred EecCCcEEEEEEE
Confidence 3455555555444
No 80
>PF00819 Myotoxins: Myotoxin; InterPro: IPR000881 Myotoxins [, , ] are small basic peptides (42 to 45 residues) found in rattlesnake venom that cause severe muscle necrosis by a non-enzymatic mechanism. Myotoxins act extremely rapidly and serve two primary biological functions: limiting the flight of prey by causing instantaneous paralysis of the hind limbs and promoting rapid death by paralysis of the diaphragm. Myotoxins have a well-conserved structure containing six cysteines involved in three disulphide bridges.; GO: 0019871 sodium channel inhibitor activity, 0005576 extracellular region; PDB: 1H5O_A 1Z99_A.
Probab=25.70 E-value=28 Score=18.78 Aligned_cols=17 Identities=12% Similarity=0.061 Sum_probs=11.7
Q ss_pred EEEEcCCCCCCCCCCCC
Q 031721 130 RLYIPGPVISNTLLILH 146 (154)
Q Consensus 130 ~i~ip~~~~yg~~~~~~ 146 (154)
.|.+||+..||+-++.-
T Consensus 16 ~ic~ppssdfgkmdcrw 32 (43)
T PF00819_consen 16 KICIPPSSDFGKMDCRW 32 (43)
T ss_dssp C--SSSSTCBBSSSS-T
T ss_pred ceECCCccccccccChH
Confidence 47899999999887743
No 81
>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5.2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....
Probab=25.46 E-value=84 Score=19.94 Aligned_cols=26 Identities=15% Similarity=0.420 Sum_probs=21.3
Q ss_pred eCCCccchHHHHHhcCCCcccEEEEE
Q 031721 107 VGSGQVVKGLDEGILTMKTGGKRRLY 132 (154)
Q Consensus 107 lG~~~~i~g~~~al~~mk~Ge~~~i~ 132 (154)
+..+++.+.|.+++..|++|+-...+
T Consensus 57 ~~~~~l~~~~~~~~~~l~~Gevs~pi 82 (95)
T PF00639_consen 57 ISRGQLPPEFEKALFALKPGEVSKPI 82 (95)
T ss_dssp EETTSSBHHHHHHHHTSTTTSBEEEE
T ss_pred ccCCcccHHHHHHHHhCCCCCcCCCE
Confidence 33458999999999999999987544
No 82
>PRK11479 hypothetical protein; Provisional
Probab=24.98 E-value=2e+02 Score=22.71 Aligned_cols=10 Identities=10% Similarity=-0.087 Sum_probs=7.0
Q ss_pred CCCCCEEEEE
Q 031721 73 PPVGFQVAAN 82 (154)
Q Consensus 73 ~~~gd~V~v~ 82 (154)
.++||.|.++
T Consensus 65 LqpGDLVFfs 74 (274)
T PRK11479 65 LKPGDLLFSS 74 (274)
T ss_pred CCCCCEEEEe
Confidence 6778887653
No 83
>PRK12318 methionine aminopeptidase; Provisional
Probab=24.88 E-value=1.8e+02 Score=22.88 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=33.2
Q ss_pred CCCCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCC---------ccchHHHHHhcCCCcccE
Q 031721 70 GPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG---------QVVKGLDEGILTMKTGGK 128 (154)
Q Consensus 70 G~~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~---------~~i~g~~~al~~mk~Ge~ 128 (154)
...+++||.|.+++-... +|-.-|.+ .+|.+|.- .+..+.+.++..+|.|-+
T Consensus 123 ~~~l~~GD~V~vD~g~~~-~GY~aDit------RT~~vG~~~~~~~~~~~~~~~a~~~~i~~~rpG~~ 183 (291)
T PRK12318 123 DIPLKNGDIMNIDVSCIV-DGYYGDCS------RMVMIGEVSEIKKKVCQASLECLNAAIAILKPGIP 183 (291)
T ss_pred CCccCCCCEEEEEEeEEE-CcEEEEEE------EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 345899999999998765 77554543 45666642 123455666666777643
No 84
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=24.11 E-value=67 Score=24.52 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=19.8
Q ss_pred CCceEEEEEecCCCCCCCCCCEEEEEEE
Q 031721 57 ESGLQYKDIKVGQGPSPPVGFQVAANYV 84 (154)
Q Consensus 57 ~~g~~~~~~~~G~G~~~~~gd~V~v~y~ 84 (154)
..|.+++++++|. ++.||.|.+.=.
T Consensus 141 ~~G~Y~RVL~~G~---V~~GD~v~l~~r 165 (223)
T PRK11536 141 KCGWLYRVIAPGK---VSADAPLELVSR 165 (223)
T ss_pred CcEEEEEEECCcE---EcCCCEEEEEeC
Confidence 5699999999874 788998876543
No 85
>PRK13614 lipoprotein LpqB; Provisional
Probab=24.00 E-value=65 Score=28.21 Aligned_cols=27 Identities=11% Similarity=-0.060 Sum_probs=14.9
Q ss_pred CcchhHHHHHHHHHHHHHhhhcccccc
Q 031721 1 MNLVSRRDLIGLVLGVSTLILDSFDAK 27 (154)
Q Consensus 1 m~~~~r~~~l~~~l~~~a~~l~~~~~~ 27 (154)
|..-||+.++++++++++.+++.|+.-
T Consensus 1 ~~~~~~~~a~~~~~~~~~~~lagCa~i 27 (573)
T PRK13614 1 GAPRRTRCASAALLVLLVVTLSACAQI 27 (573)
T ss_pred CCCCchhHHHHHHHHHHHHHhhhcccC
Confidence 565566666555555555555555443
No 86
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family. Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.
Probab=23.52 E-value=77 Score=23.66 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=22.8
Q ss_pred CCccchHHHHHhcCCCcccEEEEEEcCCCCC
Q 031721 109 SGQVVKGLDEGILTMKTGGKRRLYIPGPVIS 139 (154)
Q Consensus 109 ~~~~i~g~~~al~~mk~Ge~~~i~ip~~~~y 139 (154)
.+++++.|.+++..|++|+.. . |....+|
T Consensus 189 ~~~l~~~~~~a~~~l~~G~is-~-v~s~~G~ 217 (232)
T TIGR02925 189 AEQLPAEILAVLAKLKPGAPL-V-VQGPNNV 217 (232)
T ss_pred hhhCCHHHHHHHHhCCCCCeE-E-eecCCce
Confidence 458899999999999999975 3 5555554
No 87
>COG3712 FecR Fe2+-dicitrate sensor, membrane component [Inorganic ion transport and metabolism / Signal transduction mechanisms]
Probab=23.32 E-value=4.1e+02 Score=21.56 Aligned_cols=50 Identities=18% Similarity=0.327 Sum_probs=30.2
Q ss_pred EEEEEecCCCCCCCCCCEEEEEEEE-----EeCCCcEE-EccCCCCccEEEEeCCC
Q 031721 61 QYKDIKVGQGPSPPVGFQVAANYVA-----MIPSGQIF-DSSLEKGRPYIFRVGSG 110 (154)
Q Consensus 61 ~~~~~~~G~G~~~~~gd~V~v~y~~-----~~~~g~~~-dss~~~~~p~~f~lG~~ 110 (154)
+-..+..|+--+...++.|.|.|.. .+..|+.+ +...+...||...-|.+
T Consensus 123 R~v~L~DGS~l~Lnt~Sav~vr~~~~~R~VrL~rGea~f~va~d~~RPFvV~a~~g 178 (322)
T COG3712 123 RDVTLADGSRLELNTRSAVDVRFDAGQRRVRLLRGEALFDVAHDPARPFVVDAGDG 178 (322)
T ss_pred EEEEeCCCCEEEEcCCCeEEEEecCCeeEEEEecceEEEEecCCCCCCeEEEcCCc
Confidence 3344444443345677888888854 34578864 55555457887776654
No 88
>PRK12896 methionine aminopeptidase; Reviewed
Probab=22.91 E-value=2.7e+02 Score=20.92 Aligned_cols=52 Identities=25% Similarity=0.202 Sum_probs=32.4
Q ss_pred CCCCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCC---------ccchHHHHHhcCCCcccE
Q 031721 70 GPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG---------QVVKGLDEGILTMKTGGK 128 (154)
Q Consensus 70 G~~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~---------~~i~g~~~al~~mk~Ge~ 128 (154)
+..++.||.|.+++-... +|-.-|.+ .+|.+|.. .+..+++.++..||.|-+
T Consensus 88 ~~~l~~Gd~v~iD~g~~~-~gY~aD~~------RT~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~~ 148 (255)
T PRK12896 88 PRVIKDGDLVNIDVSAYL-DGYHGDTG------ITFAVGPVSEEAEKLCRVAEEALWAGIKQVKAGRP 148 (255)
T ss_pred CccCCCCCEEEEEEeEEE-CcEEEeeE------EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 345899999999988764 66433432 45666632 123456666777777633
No 89
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=21.49 E-value=88 Score=21.93 Aligned_cols=14 Identities=21% Similarity=0.107 Sum_probs=8.4
Q ss_pred CCCEEEEEEEEEeC
Q 031721 75 VGFQVAANYVAMIP 88 (154)
Q Consensus 75 ~gd~V~v~y~~~~~ 88 (154)
.|+.+.++++....
T Consensus 101 ~~~~~~~~~~C~~~ 114 (162)
T PF12276_consen 101 SGGTVTFTMSCTGP 114 (162)
T ss_pred eCCEEEEEEEeCCC
Confidence 45666666666553
No 90
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=21.21 E-value=94 Score=19.06 Aligned_cols=14 Identities=50% Similarity=0.522 Sum_probs=5.9
Q ss_pred CcchhHHHHHHHHH
Q 031721 1 MNLVSRRDLIGLVL 14 (154)
Q Consensus 1 m~~~~r~~~l~~~l 14 (154)
|+.+.-.-+++++|
T Consensus 1 mnn~Si~VLlaLvL 14 (71)
T PF04202_consen 1 MNNLSIAVLLALVL 14 (71)
T ss_pred CCchhHHHHHHHHH
Confidence 44444444444333
No 91
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=21.20 E-value=1.6e+02 Score=17.92 Aligned_cols=9 Identities=56% Similarity=0.586 Sum_probs=5.6
Q ss_pred hhHHHHHHH
Q 031721 4 VSRRDLIGL 12 (154)
Q Consensus 4 ~~r~~~l~~ 12 (154)
..||.||..
T Consensus 9 ~sRR~Flk~ 17 (66)
T TIGR02811 9 PSRRDLLKG 17 (66)
T ss_pred ccHHHHHHH
Confidence 556776654
No 92
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=20.71 E-value=3.2e+02 Score=20.21 Aligned_cols=52 Identities=25% Similarity=0.210 Sum_probs=31.9
Q ss_pred CCCCCCCCEEEEEEEEEeCCCcEEEccCCCCccEEEEeCCC---------ccchHHHHHhcCCCcccE
Q 031721 70 GPSPPVGFQVAANYVAMIPSGQIFDSSLEKGRPYIFRVGSG---------QVVKGLDEGILTMKTGGK 128 (154)
Q Consensus 70 G~~~~~gd~V~v~y~~~~~~g~~~dss~~~~~p~~f~lG~~---------~~i~g~~~al~~mk~Ge~ 128 (154)
...+++||.|.+++-... +|-.-|-+ .+|.+|.. .+..+.+.++..||.|-+
T Consensus 73 ~~~l~~Gd~v~id~g~~~-~GY~ad~~------RT~~~G~~~~~~~~~~~~~~~~~~~~~~~~~pG~~ 133 (238)
T cd01086 73 DRVLKDGDIVNIDVGVEL-DGYHGDSA------RTFIVGEVSEEAKKLVEVTEEALYKGIEAVKPGNR 133 (238)
T ss_pred CcccCCCCEEEEEEEEEE-CCEEEEEE------EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 345899999999988764 66544433 45666642 123445556666666644
No 93
>PF12389 Peptidase_M73: Camelysin metallo-endopeptidase; InterPro: IPR022121 Camelysin is a novel surface metallopeptidase from Bacillus cereus []. Camelysin prefers cleavage sites in front of aliphatic and hydrophilic amino acid residues (-OH, -SO3H, amido group), and requires zinc for activity [, ].
Probab=20.62 E-value=3.8e+02 Score=20.17 Aligned_cols=14 Identities=7% Similarity=0.176 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHHH
Q 031721 4 VSRRDLIGLVLGVS 17 (154)
Q Consensus 4 ~~r~~~l~~~l~~~ 17 (154)
++|+..++++.+++
T Consensus 5 ~kkklg~gia~aal 18 (199)
T PF12389_consen 5 LKKKLGMGIASAAL 18 (199)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666555443333
No 94
>COG4166 OppA ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and metabolism]
Probab=20.49 E-value=1.5e+02 Score=25.54 Aligned_cols=9 Identities=11% Similarity=0.139 Sum_probs=4.0
Q ss_pred CcchhHHHH
Q 031721 1 MNLVSRRDL 9 (154)
Q Consensus 1 m~~~~r~~~ 9 (154)
|..+++...
T Consensus 1 m~~~~~~~~ 9 (562)
T COG4166 1 MKMMRKLLK 9 (562)
T ss_pred CchhHHHHH
Confidence 554443333
No 95
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.33 E-value=88 Score=23.71 Aligned_cols=27 Identities=11% Similarity=0.057 Sum_probs=21.7
Q ss_pred CCceEEEEEecCCCCCCCCCCEEEEEEEEE
Q 031721 57 ESGLQYKDIKVGQGPSPPVGFQVAANYVAM 86 (154)
Q Consensus 57 ~~g~~~~~~~~G~G~~~~~gd~V~v~y~~~ 86 (154)
-+|++++++++|. +..||.+.+-+...
T Consensus 138 ~~G~y~RVL~~G~---v~~gD~l~l~~r~~ 164 (210)
T COG2258 138 RTGWYARVLEEGK---VRAGDPLKLIPRPS 164 (210)
T ss_pred cccEEEEEcccce---ecCCCceEEecCCC
Confidence 3589999999874 78899998877654
No 96
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=20.19 E-value=1.2e+02 Score=24.53 Aligned_cols=10 Identities=20% Similarity=0.557 Sum_probs=6.8
Q ss_pred hhHHHHHHHH
Q 031721 4 VSRRDLIGLV 13 (154)
Q Consensus 4 ~~r~~~l~~~ 13 (154)
|.||.||.++
T Consensus 1 ~~RR~fl~~~ 10 (328)
T PRK10882 1 MNRRNFLKAA 10 (328)
T ss_pred CCHHHHHHHH
Confidence 4588888654
Done!