Query 031723
Match_columns 154
No_of_seqs 125 out of 327
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 06:39:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031723.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031723hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_V RPS17E; ribosome, trans 59.4 4.9 0.00017 30.3 2.2 27 50-83 50-76 (130)
2 2ckc_A Chromodomain-helicase-D 24.5 54 0.0018 22.6 2.7 16 5-20 43-58 (80)
3 3u5c_R RP51A, 40S ribosomal pr 23.1 57 0.0019 24.6 2.8 27 50-83 50-76 (136)
4 3g36_A Protein DPY-30 homolog; 22.8 34 0.0012 21.8 1.4 20 3-22 32-51 (55)
5 3iz6_Q 40S ribosomal protein S 16.2 69 0.0024 24.3 2.0 26 50-82 50-75 (141)
6 1v54_B Cytochrome C oxidase po 14.6 2.1E+02 0.0071 22.6 4.5 35 117-151 42-76 (227)
7 2exn_A Hypothetical protein BO 12.5 54 0.0018 23.7 0.4 14 68-81 7-20 (136)
8 2b4l_A Glycine betaine-binding 9.3 65 0.0022 25.6 -0.1 24 4-27 134-157 (268)
9 2gsm_B Cytochrome C oxidase su 7.0 4.2E+02 0.014 21.2 3.8 15 138-152 77-91 (262)
10 3hd7_A Vesicle-associated memb 6.9 81 0.0028 21.5 -0.5 19 13-33 63-81 (91)
No 1
>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_V
Probab=59.42 E-value=4.9 Score=30.30 Aligned_cols=27 Identities=37% Similarity=0.482 Sum_probs=21.1
Q ss_pred hHhhhHHHHHHHHHHHHhhccccccccccchhHH
Q 031723 50 VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQEL 83 (154)
Q Consensus 50 ~lgDl~Hl~si~iLl~Ki~~tkScsGISlKTQ~L 83 (154)
++|-..| +.|-.....+.|||+|-||=
T Consensus 50 IAGYVTh-------lmkriq~gpvrgis~klqEe 76 (130)
T 2xzm_V 50 IAGFATH-------LMKRIQKGPVRGISLKVQEE 76 (130)
T ss_dssp HHHHHHH-------HHHHTTTSCCTTCCCTTTTH
T ss_pred ccchhhh-------HhhhcccCcccccccchhHH
Confidence 6788888 34556677889999999973
No 2
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=24.46 E-value=54 Score=22.63 Aligned_cols=16 Identities=13% Similarity=0.453 Sum_probs=12.4
Q ss_pred CChHHHHHHHHHhCCC
Q 031723 5 KRPIHAVSTWVRRQPP 20 (154)
Q Consensus 5 ~~~~~~~~~~l~~~~~ 20 (154)
-.|.+.+..|||+|+.
T Consensus 43 AP~~KdL~dWLrqhP~ 58 (80)
T 2ckc_A 43 APKNKDLVEWLKLHPT 58 (80)
T ss_dssp SCBHHHHHHHHHHCTT
T ss_pred CccccCHHHHHHHCCC
Confidence 3455669999999986
No 3
>3u5c_R RP51A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Q 3o30_K 3o2z_K 3u5g_R
Probab=23.11 E-value=57 Score=24.61 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=18.9
Q ss_pred hHhhhHHHHHHHHHHHHhhccccccccccchhHH
Q 031723 50 VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQEL 83 (154)
Q Consensus 50 ~lgDl~Hl~si~iLl~Ki~~tkScsGISlKTQ~L 83 (154)
++|=..|+ .|-...-.+.|||+|.||-
T Consensus 50 IAGYVThL-------mKriq~GpvrgisiklqEe 76 (136)
T 3u5c_R 50 IAGYTTHL-------MKRIQKGPVRGISFKLQEE 76 (136)
T ss_dssp HHHHHHHH-------HHHHTTSCBTTBCCSHHHH
T ss_pred hhhhhhhh-------hcccccCCcccceeehhHH
Confidence 55655554 3455566789999999984
No 4
>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens}
Probab=22.82 E-value=34 Score=21.76 Aligned_cols=20 Identities=15% Similarity=0.487 Sum_probs=17.3
Q ss_pred CCCChHHHHHHHHHhCCCce
Q 031723 3 APKRPIHAVSTWVRRQPPKV 22 (154)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~v 22 (154)
|..||++-+..||-+++++.
T Consensus 32 rP~DPi~~LA~~Ll~~~~~~ 51 (55)
T 3g36_A 32 RPPNPIEFLASYLLKNKAQF 51 (55)
T ss_dssp CCSCHHHHHHHHHHHHGGGG
T ss_pred CCCCHHHHHHHHHHHhCccc
Confidence 67899999999999988765
No 5
>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=16.17 E-value=69 Score=24.28 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=18.5
Q ss_pred hHhhhHHHHHHHHHHHHhhccccccccccchhH
Q 031723 50 VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQE 82 (154)
Q Consensus 50 ~lgDl~Hl~si~iLl~Ki~~tkScsGISlKTQ~ 82 (154)
++|=..|+ .|-...-.+.|||+|.||
T Consensus 50 IAGYVThl-------mKriq~GpvrgisiklqE 75 (141)
T 3iz6_Q 50 VAGFTTHL-------MRRIQRGPVRGISLKLQE 75 (141)
T ss_dssp HHHHHHHH-------HHHHCSCCCCCSSCCSSC
T ss_pred hhheeeeh-------hhccccCCccccceehhH
Confidence 56666664 344555578999999997
No 6
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=14.63 E-value=2.1e+02 Score=22.56 Aligned_cols=35 Identities=9% Similarity=0.143 Sum_probs=18.7
Q ss_pred HHHHhhcccccccccCCCccchhhhhhhhhhhhhh
Q 031723 117 VIYMIRFNLRSSYMEDKDNFAIYYVVSFLPFMPIF 151 (154)
Q Consensus 117 iiyli~~k~k~TYd~~~DtF~~~yLivP~~~la~~ 151 (154)
.++.+..|+.+.+-.+....-+.+-++|++++..+
T Consensus 42 l~~~~~~~~~~~~~~~~~~lEiiWTiiP~iil~~l 76 (227)
T 1v54_B 42 ISLMLTTKLTHTSTMDAQEVETIWTILPAIILILI 76 (227)
T ss_dssp HHHHHSCSCCCCSCCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccccCceeEEeeehHHHHHHHHH
Confidence 33444334433333334444555888998877543
No 7
>2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1
Probab=12.48 E-value=54 Score=23.66 Aligned_cols=14 Identities=7% Similarity=0.154 Sum_probs=11.1
Q ss_pred hccccccccccchh
Q 031723 68 MKEKTCAGLSLKSQ 81 (154)
Q Consensus 68 ~~tkScsGISlKTQ 81 (154)
.-=|||.|+++..=
T Consensus 7 YPIKSc~g~~l~~a 20 (136)
T 2exn_A 7 QPIAECGATTQSEA 20 (136)
T ss_dssp EEETTTEEECCGGG
T ss_pred eccccCCceecCcc
Confidence 34599999999873
No 8
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=9.27 E-value=65 Score=25.64 Aligned_cols=24 Identities=8% Similarity=0.382 Sum_probs=20.3
Q ss_pred CCChHHHHHHHHHhCCCceeehHH
Q 031723 4 PKRPIHAVSTWVRRQPPKVKAFLA 27 (154)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~vk~~~g 27 (154)
.++|.+....||++|+..++-|+.
T Consensus 134 ~~~~~~vA~~wl~~~~~~~~~W~~ 157 (268)
T 2b4l_A 134 GEKPAKVAAEYVNKHKDQIAEWTK 157 (268)
T ss_dssp TCCHHHHHHHHHHHCHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHCHHHHHHHhC
Confidence 468999999999999988877764
No 9
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=7.03 E-value=4.2e+02 Score=21.20 Aligned_cols=15 Identities=7% Similarity=0.069 Sum_probs=10.3
Q ss_pred hhhhhhhhhhhhhhh
Q 031723 138 IYYVVSFLPFMPIFL 152 (154)
Q Consensus 138 ~~yLivP~~~la~~l 152 (154)
+.+-++|++++..+.
T Consensus 77 iiWTiiP~iILi~la 91 (262)
T 2gsm_B 77 IAWTIVPIVILVAIG 91 (262)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHH
Confidence 447789988775543
No 10
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=6.86 E-value=81 Score=21.47 Aligned_cols=19 Identities=21% Similarity=0.480 Sum_probs=9.1
Q ss_pred HHHHhCCCceeehHHHHHHHH
Q 031723 13 TWVRRQPPKVKAFLAVVSGMA 33 (154)
Q Consensus 13 ~~l~~~~~~vk~~~g~~~~~~ 33 (154)
+|.++ .|.++.+|+.++++
T Consensus 63 mwwkn--~K~~iii~~iv~~i 81 (91)
T 3hd7_A 63 YWWKN--LKMMIILGVICAII 81 (91)
T ss_dssp HHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHHH
Confidence 44443 34445555555444
Done!