Query 031723
Match_columns 154
No_of_seqs 125 out of 327
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 06:39:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031723.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031723hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54b2 f.17.2.1 (B:1-90) Mito 20.1 60 0.0044 20.3 4.0 28 124-151 49-76 (90)
2 d2ckca1 d.76.2.1 (A:2563-2622) 17.6 45 0.0033 20.1 2.7 17 4-20 22-38 (60)
3 d2exna1 b.165.1.1 (A:1-128) Hy 14.3 19 0.0014 24.1 0.3 14 67-80 6-19 (128)
4 d2eyqa2 c.37.1.19 (A:349-465) 13.4 47 0.0034 21.5 2.1 23 2-24 17-39 (117)
5 d2ckaa1 d.76.2.1 (A:2028-2085) 12.6 75 0.0054 18.9 2.7 19 3-21 23-41 (58)
6 d1ekza_ d.50.1.1 (A:) Staufen, 10.3 1.2E+02 0.0085 17.9 3.2 22 2-23 4-25 (76)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 9.2 1.7E+02 0.013 18.1 3.9 14 138-151 73-86 (100)
8 d3ehbb2 f.17.2.1 (B:1-107) Bac 7.9 1.7E+02 0.013 18.4 3.5 15 137-151 78-92 (107)
9 d2dixa1 d.50.1.1 (A:7-79) Inte 6.3 1.8E+02 0.013 16.7 2.7 18 4-21 1-18 (73)
10 d1fftb2 f.17.2.1 (B:27-117) Cy 5.8 83 0.0061 19.6 0.8 14 140-153 66-79 (91)
No 1
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.15 E-value=60 Score=20.32 Aligned_cols=28 Identities=7% Similarity=0.107 Sum_probs=16.0
Q ss_pred ccccccccCCCccchhhhhhhhhhhhhh
Q 031723 124 NLRSSYMEDKDNFAIYYVVSFLPFMPIF 151 (154)
Q Consensus 124 k~k~TYd~~~DtF~~~yLivP~~~la~~ 151 (154)
+++..+-.++.+.-+-+=++|+++|...
T Consensus 49 ~~~~~~~~~~~~lEiiWTiiP~lILi~i 76 (90)
T d1v54b2 49 KLTHTSTMDAQEVETIWTILPAIILILI 76 (90)
T ss_dssp SCCCCSCCCCTTHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHHHHHHH
Confidence 4433333334445555788999877543
No 2
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.58 E-value=45 Score=20.10 Aligned_cols=17 Identities=12% Similarity=0.413 Sum_probs=13.5
Q ss_pred CCChHHHHHHHHHhCCC
Q 031723 4 PKRPIHAVSTWVRRQPP 20 (154)
Q Consensus 4 ~~~~~~~~~~~l~~~~~ 20 (154)
.-+....+..||++||+
T Consensus 22 ~AP~~~~L~~WL~~hP~ 38 (60)
T d2ckca1 22 DAPKNKDLVEWLKLHPT 38 (60)
T ss_dssp SSCBHHHHHHHHHHCTT
T ss_pred CCcCHHHHHHHHHHCCC
Confidence 34567779999999986
No 3
>d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]}
Probab=14.32 E-value=19 Score=24.07 Aligned_cols=14 Identities=7% Similarity=0.159 Sum_probs=10.5
Q ss_pred hhccccccccccch
Q 031723 67 LMKEKTCAGLSLKS 80 (154)
Q Consensus 67 i~~tkScsGISlKT 80 (154)
++-=|||.|+|+-.
T Consensus 6 ~~PIKsc~g~~~~~ 19 (128)
T d2exna1 6 YQPIAECGATTQSE 19 (128)
T ss_dssp EEEETTTEEECCGG
T ss_pred eecccccCCccccc
Confidence 34569999999843
No 4
>d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=13.44 E-value=47 Score=21.48 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=18.0
Q ss_pred CCCCChHHHHHHHHHhCCCceee
Q 031723 2 RAPKRPIHAVSTWVRRQPPKVKA 24 (154)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~vk~ 24 (154)
.+.++|.+++..|++++..+|=+
T Consensus 17 ~~~~~p~~~L~~~i~~~~~~Vli 39 (117)
T d2eyqa2 17 AQQKAPLDALRKFLETFDGPVVF 39 (117)
T ss_dssp SSSSSTTHHHHHHHTTCCSCCCE
T ss_pred cchhcHHHHHHHHHHhCCCeEEE
Confidence 34589999999999987776533
No 5
>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.56 E-value=75 Score=18.93 Aligned_cols=19 Identities=11% Similarity=0.296 Sum_probs=14.4
Q ss_pred CCCChHHHHHHHHHhCCCc
Q 031723 3 APKRPIHAVSTWVRRQPPK 21 (154)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~ 21 (154)
..-+.++.+..||+.||+=
T Consensus 23 ~~AP~~~~L~~WL~~nP~y 41 (58)
T d2ckaa1 23 EDAPRRAELEMWLQGHPEF 41 (58)
T ss_dssp TSSCBHHHHHHHHHHCTTE
T ss_pred cCCcCHHHHHHHHHHCCCC
Confidence 3345677799999999863
No 6
>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=10.29 E-value=1.2e+02 Score=17.92 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=17.8
Q ss_pred CCCCChHHHHHHHHHhCCCcee
Q 031723 2 RAPKRPIHAVSTWVRRQPPKVK 23 (154)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~vk 23 (154)
+..+||+-.+.+|.++++..+.
T Consensus 4 ~~~k~Pvs~L~E~~q~~~~~~~ 25 (76)
T d1ekza_ 4 GDKKSPISQVHEIGIKRNMTVH 25 (76)
T ss_dssp CCCSCHHHHHHHHHHHTTCCCE
T ss_pred CCCCCHHHHHHHHHHhCCCCCe
Confidence 4568999999999988877654
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=9.25 E-value=1.7e+02 Score=18.05 Aligned_cols=14 Identities=7% Similarity=0.178 Sum_probs=9.7
Q ss_pred hhhhhhhhhhhhhh
Q 031723 138 IYYVVSFLPFMPIF 151 (154)
Q Consensus 138 ~~yLivP~~~la~~ 151 (154)
+-+-++|++++..+
T Consensus 73 iiWTviP~lILi~l 86 (100)
T d3dtub2 73 IAWTIVPIVILVAI 86 (100)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34788898877543
No 8
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=7.90 E-value=1.7e+02 Score=18.40 Aligned_cols=15 Identities=0% Similarity=0.118 Sum_probs=10.1
Q ss_pred chhhhhhhhhhhhhh
Q 031723 137 AIYYVVSFLPFMPIF 151 (154)
Q Consensus 137 ~~~yLivP~~~la~~ 151 (154)
.+-+-++|++++..+
T Consensus 78 Ei~WTviP~lIL~~l 92 (107)
T d3ehbb2 78 EVIWTLVPVLILVAI 92 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344788898877544
No 9
>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.33 E-value=1.8e+02 Score=16.73 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=14.2
Q ss_pred CCChHHHHHHHHHhCCCc
Q 031723 4 PKRPIHAVSTWVRRQPPK 21 (154)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~ 21 (154)
+|||+..+-+|.+++...
T Consensus 1 gK~Pis~L~E~~qk~~~~ 18 (73)
T d2dixa1 1 GKTPIQVLHEYGMKTKNI 18 (73)
T ss_dssp CCCHHHHHHHHHHHTTCC
T ss_pred CcCHHHHHHHHHHhCCCC
Confidence 478999999998887643
No 10
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=5.83 E-value=83 Score=19.55 Aligned_cols=14 Identities=7% Similarity=-0.043 Sum_probs=9.8
Q ss_pred hhhhhhhhhhhhhc
Q 031723 140 YVVSFLPFMPIFLV 153 (154)
Q Consensus 140 yLivP~~~la~~l~ 153 (154)
+-++|.+++..+.+
T Consensus 66 WtiIP~iil~~iav 79 (91)
T d1fftb2 66 VWTVPILIIIFLAV 79 (91)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66789988765543
Done!