BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>031724
MGESSSSASASEQQSFFRKHWEGYKEFWGERFSFLENYTRFTKREKPLPSWSPSDVDAFI
ATDPVHGPALKSAREAVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFG
QEFANHYLQLYRMDTLAAQSKFMEWWEAKCAERS

High Scoring Gene Products

Symbol, full name Information P value
SDH6
AT1G08480 		protein from Arabidopsis thaliana 1.3e-50

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031724
        (154 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2201851 - symbol:SDH6 "AT1G08480" species:3702...   526  1.3e-50   1


>TAIR|locus:2201851 [details] [associations]
            symbol:SDH6 "AT1G08480" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005773 "vacuole" evidence=IDA] [GO:0005749
            "mitochondrial respiratory chain complex II" evidence=IDA]
            [GO:0009536 "plastid" evidence=IDA] [GO:0005774 "vacuolar membrane"
            evidence=IDA] [GO:0009853 "photorespiration" evidence=RCA]
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005774 GO:GO:0009536
            GO:GO:0005749 UniGene:At.26502 EMBL:AY052314 EMBL:AY061894
            IPI:IPI00537246 RefSeq:NP_563819.1 IntAct:Q941A6 STRING:Q941A6
            PaxDb:Q941A6 PRIDE:Q941A6 EnsemblPlants:AT1G08480.1 GeneID:837369
            KEGG:ath:AT1G08480 TAIR:At1g08480 eggNOG:NOG311944
            HOGENOM:HOG000242547 InParanoid:Q941A6 OMA:ASDPVYG PhylomeDB:Q941A6
            ProtClustDB:PLN02720 BioCyc:ARA:AT1G08480-MONOMER
            BioCyc:MetaCyc:AT1G08480-MONOMER Genevestigator:Q941A6
            Uniprot:Q941A6
        Length = 142

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 93/134 (69%), Positives = 106/134 (79%)

Query:    16 FFRKHWEGYKEFWGERFSFLENYTRFTKREKPLPSWSPSDVDAFIATDPVHGPALKSARE 75
             F  K+W G K+FW +R SF ENYTRFTKR+ PLPSWS SDV+ FIA+DPVHGP LK+ARE
Sbjct:     7 FVGKNWNGLKDFWSDRLSFFENYTRFTKRDAPLPSWSSSDVEEFIASDPVHGPTLKTARE 66

Query:    76 AVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANHYLQLYRMDT 135
             AV F + G+ +GAVSTA  AWKYSRS HG  LS   G VFGWTFGQE ANH LQLY++DT
Sbjct:    67 AVTFGVTGAALGAVSTAAFAWKYSRSPHGAALSFLGGGVFGWTFGQEVANHTLQLYKLDT 126

Query:   136 LAAQSKFMEWWEAK 149
             +AAQ KFMEWWE K
Sbjct:   127 MAAQVKFMEWWERK 140


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.133   0.439    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      154       141   0.00091  102 3  11 22  0.41    31
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  163 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.93u 0.10s 14.03t   Elapsed:  00:00:01
  Total cpu time:  13.93u 0.10s 14.03t   Elapsed:  00:00:01
  Start:  Thu May  9 21:34:29 2013   End:  Thu May  9 21:34:30 2013

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