BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031724
         (154 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BI4|A Chain A, Lactaldehyde:1,2-Propanediol Oxidoreductase Of Escherichia
           Coli
 pdb|2BI4|B Chain B, Lactaldehyde:1,2-Propanediol Oxidoreductase Of Escherichia
           Coli
 pdb|2BL4|A Chain A, Lactaldehyde:1,2-Propanediol Oxidoreductase Of Escherichia
           Coli
 pdb|2BL4|B Chain B, Lactaldehyde:1,2-Propanediol Oxidoreductase Of Escherichia
           Coli
          Length = 392

 Score = 29.6 bits (65), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 15/102 (14%)

Query: 37  NY--TRFTKREKPLPSWSPSDVD--AFIATDPVHG--PALKSAR--EAVNFALAGSLIGA 88
           NY  T   KR K      P D+   AFI  D + G  PALK+A   +A+  A+ G +   
Sbjct: 160 NYVITDEEKRRK-FVCVDPHDIPQVAFIDADMMDGMPPALKAATGVDALTHAIEGYI--- 215

Query: 89  VSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANHYLQL 130
             T G AW  + +LH   + + AGA+ G   G + A   + L
Sbjct: 216 --TRG-AWALTDALHIKAIEIIAGALRGSVAGDKDAGEEMAL 254


>pdb|1RRM|A Chain A, Crystal Structure Of Lactaldehyde Reductase
 pdb|1RRM|B Chain B, Crystal Structure Of Lactaldehyde Reductase
          Length = 386

 Score = 27.7 bits (60), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 12/85 (14%)

Query: 52  SPSDVD--AFIATDPVHG--PALKSAR--EAVNFALAGSLIGAVSTAGVAWKYSRSLHGT 105
            P D+   AFI  D   G  PALK+A   +A+  A+ G +     T G AW  + +LH  
Sbjct: 167 DPHDIPQVAFIDADXXDGXPPALKAATGVDALTHAIEGYI-----TRG-AWALTDALHIK 220

Query: 106 GLSLAAGAVFGWTFGQEFANHYLQL 130
            + + AGA+ G   G + A     L
Sbjct: 221 AIEIIAGALRGSVAGDKDAGEEXAL 245


>pdb|1O61|A Chain A, Crystal Structure Of A Plp-Dependent Enzyme With Plp
 pdb|1O61|B Chain B, Crystal Structure Of A Plp-Dependent Enzyme With Plp
 pdb|1O62|A Chain A, Crystal Structure Of The Apo Form Of A Plp-Dependent
           Enzyme
 pdb|1O62|B Chain B, Crystal Structure Of The Apo Form Of A Plp-Dependent
           Enzyme
 pdb|1O69|A Chain A, Crystal Structure Of A Plp-Dependent Enzyme
 pdb|1O69|B Chain B, Crystal Structure Of A Plp-Dependent Enzyme
          Length = 394

 Score = 27.3 bits (59), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 12/19 (63%), Positives = 15/19 (78%)

Query: 18  RKHWEGYKEFWGERFSFLE 36
           R+ +E YKEF GE FSFL+
Sbjct: 253 REIYEWYKEFLGEYFSFLD 271


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.133    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,348,627
Number of Sequences: 62578
Number of extensions: 162154
Number of successful extensions: 355
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 4
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)