BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031724
(154 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q92KW1|MNME_RHIME tRNA modification GTPase MnmE OS=Rhizobium meliloti (strain 1021)
GN=mnmE PE=3 SV=2
Length = 439
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 42 TKREKPLPSWSPSDVDAFIAT 62
TK ++P PSW+PSD D F++T
Sbjct: 327 TKVDRPSPSWAPSDADIFLST 347
>sp|Q9LRC8|BAGLU_SCUBA Baicalin-beta-D-glucuronidase OS=Scutellaria baicalensis GN=SGUS
PE=1 SV=1
Length = 527
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 83 GSLIGAVSTAGVAWKYSRSLHGTGLSLAAG--AVFGWTFGQEFANHYL 128
G +G +TA W YS S SL G + GWT G E H L
Sbjct: 171 GQYLGETTTAVGEWDYSNSKFLIEYSLKKGYKHIRGWTLGNELGGHTL 218
>sp|Q7NB76|SCPA_MYCGA Segregation and condensation protein A OS=Mycoplasma gallisepticum
(strain R(low / passage 15 / clone 2)) GN=scpA PE=3 SV=2
Length = 592
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 1 MGESSSSASASEQQSFFRKHWEGYKEFWGERFSFLENYTRFTKREK 46
+ ES +QSFF++ E K+ +GE + E Y + T EK
Sbjct: 453 LKESIKQIQEERKQSFFKQREEYLKKKYGEYYVSREQYQKLTPEEK 498
>sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea
GN=RPE PE=1 SV=1
Length = 285
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 37 NYTRFTKREKPLPSWSPSDVDAFIATDPVHGPALKSAREAVNFALAGSLIGAVSTAGVAW 96
N FT+R+ + S VD F +D + P++ SA NFA G + AV AG W
Sbjct: 35 NSLTFTRRKVQTLVKATSRVDKFSKSDIIVSPSILSA----NFAKLGEQVKAVELAGCDW 90
Query: 97 KYSRSLHG 104
+ + G
Sbjct: 91 IHVDVMDG 98
>sp|Q9HMV6|HELS_HALSA Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=VNG_2368G PE=3 SV=1
Length = 783
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 67 GPALKSAREAVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAA-------GAVFGWTF 119
GPA++ AR+ V + + L+G V K +R L+ G+ A G V G
Sbjct: 674 GPAVREARKRVQYGVREELLGLAGVRNVGRKRARRLYNAGVESRADLRNADKGVVLGAVR 733
Query: 120 GQ 121
G+
Sbjct: 734 GR 735
>sp|B0R7Q2|HELS_HALS3 Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=OE_4325F PE=3 SV=1
Length = 783
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 67 GPALKSAREAVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAA-------GAVFGWTF 119
GPA++ AR+ V + + L+G V K +R L+ G+ A G V G
Sbjct: 674 GPAVREARKRVQYGVREELLGLAGVRNVGRKRARRLYNAGVESRADLRNADKGVVLGAVR 733
Query: 120 GQ 121
G+
Sbjct: 734 GR 735
>sp|Q9RTR9|GLUQ_DEIRA Glutamyl-Q tRNA(Asp) synthetase OS=Deinococcus radiodurans (strain
ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC
15346 / NCIMB 9279 / R1 / VKM B-1422) GN=gluQ PE=3 SV=1
Length = 295
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 14/82 (17%)
Query: 86 IGAVSTAGVAWKYSRSLHGTGL----SLAAGAVFGWTF----------GQEFANHYLQLY 131
+G TA +AW +SR+L G L L G V GW + G ++ + Q
Sbjct: 17 LGNARTALLAWLHSRALGGRHLLRFEDLDTGRVRGWAYDLTRRDLEWLGLDWDEEFRQSE 76
Query: 132 RMDTLAAQSKFMEWWEAKCAER 153
R+D AA ++ + C +
Sbjct: 77 RLDLYAAALAGLDTYPCTCTRK 98
>sp|P0A9S1|FUCO_ECOLI Lactaldehyde reductase OS=Escherichia coli (strain K12) GN=fucO
PE=1 SV=2
Length = 382
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 37 NY--TRFTKREKPLPSWSPSDVD--AFIATDPVHG--PALKSAR--EAVNFALAGSLIGA 88
NY T KR K P D+ AFI D + G PALK+A +A+ A+ G +
Sbjct: 150 NYVITDEEKRRK-FVCVDPHDIPQVAFIDADMMDGMPPALKAATGVDALTHAIEGYI--- 205
Query: 89 VSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANHYLQL 130
T G AW + +LH + + AGA+ G G + A + L
Sbjct: 206 --TRG-AWALTDALHIKAIEIIAGALRGSVAGDKDAGEEMAL 244
>sp|P0A9S2|FUCO_ECO57 Lactaldehyde reductase OS=Escherichia coli O157:H7 GN=fucO PE=3
SV=2
Length = 382
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 37 NY--TRFTKREKPLPSWSPSDVD--AFIATDPVHG--PALKSAR--EAVNFALAGSLIGA 88
NY T KR K P D+ AFI D + G PALK+A +A+ A+ G +
Sbjct: 150 NYVITDEEKRRK-FVCVDPHDIPQVAFIDADMMDGMPPALKAATGVDALTHAIEGYI--- 205
Query: 89 VSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANHYLQL 130
T G AW + +LH + + AGA+ G G + A + L
Sbjct: 206 --TRG-AWALTDALHIKAIEIIAGALRGSVAGDKDAGEEMAL 244
>sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum
tuberosum PE=1 SV=1
Length = 280
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 30 ERFSFLE-NYTRFTKREKPLPSWSPSDVDAFIATDPVHGPALKSAREAVNFALAGSLIGA 88
++ SF N FT+R + S VD F +D + P++ SA NF+ G + A
Sbjct: 22 QKISFSNPNSLTFTRRRIQTVVNASSRVDKFSKSDIIVSPSILSA----NFSKLGEQVKA 77
Query: 89 VSTAGVAWKYSRSLHG 104
+ AG W + + G
Sbjct: 78 IEQAGCDWIHVDVMDG 93
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.129 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,049,929
Number of Sequences: 539616
Number of extensions: 2042071
Number of successful extensions: 5787
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5783
Number of HSP's gapped (non-prelim): 14
length of query: 154
length of database: 191,569,459
effective HSP length: 107
effective length of query: 47
effective length of database: 133,830,547
effective search space: 6290035709
effective search space used: 6290035709
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)