Query 031724
Match_columns 154
No_of_seqs 20 out of 22
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 06:40:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bq7_A Diacylglycerol kinase d 75.4 0.73 2.5E-05 30.7 0.5 21 43-63 2-22 (81)
2 3bs7_A Protein aveugle; sterIl 72.7 0.93 3.2E-05 29.5 0.5 17 46-62 1-17 (78)
3 1kw4_A Polyhomeotic; SAM domai 71.8 2.6 8.7E-05 29.1 2.6 29 46-74 12-40 (89)
4 2gle_A Neurabin-1; SAM domain, 70.9 1.3 4.3E-05 28.6 0.8 18 46-63 2-19 (74)
5 1pk1_B Sex COMB on midleg CG94 69.8 2.1 7E-05 29.8 1.8 25 46-70 12-37 (89)
6 3bs5_B Connector enhancer of k 66.9 1.7 5.8E-05 28.4 0.8 18 46-63 2-19 (80)
7 2ean_A Connector enhancer of k 66.0 2 7E-05 28.4 1.1 19 44-62 4-22 (83)
8 3bs5_A Protein aveugle; sterIl 46.2 5.7 0.00019 28.1 0.7 26 42-67 17-43 (106)
9 2d8c_A Phosphatidylcholine:cer 43.4 11 0.00038 26.5 1.8 20 43-62 12-31 (97)
10 1v85_A Similar to ring finger 40.6 7.2 0.00025 26.5 0.5 19 44-62 13-31 (91)
11 1wwv_A Connector enhancer of k 39.9 15 0.00052 25.4 2.0 18 44-61 7-24 (91)
12 1uzc_A Hypothetical protein FL 30.5 23 0.0008 23.8 1.7 38 37-75 20-57 (71)
13 2lc3_A E3 ubiquitin-protein li 28.4 20 0.00068 26.1 1.1 19 48-66 13-31 (88)
14 2cki_A Ulilysin; metalloprotea 27.9 12 0.00042 30.2 -0.0 18 115-133 162-179 (262)
15 2f3n_A SH3 and multiple ankyri 27.5 14 0.00048 24.0 0.2 16 48-63 2-17 (76)
16 2e8o_A SAM domain and HD domai 25.9 14 0.00047 25.6 -0.1 18 45-62 24-41 (103)
17 3lys_A Prophage PI2 protein 01 22.7 1.3E+02 0.0044 19.0 4.2 26 35-61 36-61 (112)
18 2oq2_A Phosphoadenosine phosph 22.0 36 0.0012 26.4 1.6 19 44-62 183-201 (261)
19 1z4h_A TORI, TOR inhibition pr 21.7 17 0.00058 22.8 -0.3 13 50-62 47-59 (66)
20 3p5n_A RIBU, riboflavin uptake 20.1 1.1E+02 0.0038 22.8 3.9 30 96-126 103-132 (189)
No 1
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=75.41 E-value=0.73 Score=30.72 Aligned_cols=21 Identities=19% Similarity=0.602 Sum_probs=16.2
Q ss_pred cCCCCCCCCCchhhHHhhhcC
Q 031724 43 KREKPLPSWSPSDVDAFIATD 63 (154)
Q Consensus 43 ~RdkPLP~Ws~sDVeeFIaSD 63 (154)
.|.+|++.||..||.+|+.+=
T Consensus 2 ~~~~~v~~Ws~~~V~~WL~~l 22 (81)
T 3bq7_A 2 EKTRPVHLWGTEEVAAWLEHL 22 (81)
T ss_dssp ---CCGGGCCHHHHHHHHHHT
T ss_pred CCCCChhhCCHHHHHHHHHHC
Confidence 367889999999999999863
No 2
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=72.75 E-value=0.93 Score=29.55 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=15.8
Q ss_pred CCCCCCCchhhHHhhhc
Q 031724 46 KPLPSWSPSDVDAFIAT 62 (154)
Q Consensus 46 kPLP~Ws~sDVeeFIaS 62 (154)
||+..||..||.+|+.+
T Consensus 1 k~v~~Wt~~~V~~WL~~ 17 (78)
T 3bs7_A 1 KAVYLWTVSDVLKWYRR 17 (78)
T ss_dssp CCGGGCCHHHHHHHHHH
T ss_pred CChhhCCHHHHHHHHHH
Confidence 68899999999999987
No 3
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=71.79 E-value=2.6 Score=29.10 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=21.0
Q ss_pred CCCCCCCchhhHHhhhcCCCCchhHHhHH
Q 031724 46 KPLPSWSPSDVDAFIATDPVHGPALKSAR 74 (154)
Q Consensus 46 kPLP~Ws~sDVeeFIaSDPVyGP~LK~~R 74 (154)
.|+..||..||.+|+.+-|-++.-....|
T Consensus 12 ~~v~~Ws~edV~~wL~~l~gl~~y~~~F~ 40 (89)
T 1kw4_A 12 PPISSWSVDDVSNFIRELPGCQDYVDDFI 40 (89)
T ss_dssp CCGGGCCHHHHHHHHHTSTTCGGGHHHHH
T ss_pred CCchhCCHHHHHHHHHHCcChHHHHHHHH
Confidence 35666999999999998876654444443
No 4
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=70.94 E-value=1.3 Score=28.64 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=16.0
Q ss_pred CCCCCCCchhhHHhhhcC
Q 031724 46 KPLPSWSPSDVDAFIATD 63 (154)
Q Consensus 46 kPLP~Ws~sDVeeFIaSD 63 (154)
+|++.||..||.+|+.+=
T Consensus 2 ~~v~~Ws~~~V~~WL~~~ 19 (74)
T 2gle_A 2 HMVHEWSVQQVSHWLVGL 19 (74)
T ss_dssp CCGGGCCSGGGHHHHHHT
T ss_pred CCcccCCHHHHHHHHHHC
Confidence 688999999999999864
No 5
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=69.77 E-value=2.1 Score=29.80 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=17.7
Q ss_pred CCCCCCCchhhHHhhhc-CCCCchhH
Q 031724 46 KPLPSWSPSDVDAFIAT-DPVHGPAL 70 (154)
Q Consensus 46 kPLP~Ws~sDVeeFIaS-DPVyGP~L 70 (154)
++...||..||-+||.+ ||-++...
T Consensus 12 ~~v~~WsvedV~~wl~~~~~g~~~y~ 37 (89)
T 1pk1_B 12 SQPIDWTIEEVIQYIESNDNSLAVHG 37 (89)
T ss_dssp CCGGGCCHHHHHHHHHHHCGGGGGGH
T ss_pred CCchhCCHHHHHHHHHHHccchHHHH
Confidence 34446999999999987 56444333
No 6
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=66.86 E-value=1.7 Score=28.41 Aligned_cols=18 Identities=33% Similarity=0.722 Sum_probs=16.2
Q ss_pred CCCCCCCchhhHHhhhcC
Q 031724 46 KPLPSWSPSDVDAFIATD 63 (154)
Q Consensus 46 kPLP~Ws~sDVeeFIaSD 63 (154)
+|++.||..||.+|+.+=
T Consensus 2 ~~v~~Ws~~~V~~WL~~l 19 (80)
T 3bs5_B 2 EPVSKWSPSQVVDWMKGL 19 (80)
T ss_dssp CCGGGCCHHHHHHHHHTS
T ss_pred CccccCCHHHHHHHHHHH
Confidence 688999999999999863
No 7
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.03 E-value=2 Score=28.37 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=16.9
Q ss_pred CCCCCCCCCchhhHHhhhc
Q 031724 44 REKPLPSWSPSDVDAFIAT 62 (154)
Q Consensus 44 RdkPLP~Ws~sDVeeFIaS 62 (154)
..+|++.||..||.+|+.+
T Consensus 4 ~~~~v~~Wt~~~V~~WL~~ 22 (83)
T 2ean_A 4 GSSGVSKWSPSQVVDWMKG 22 (83)
T ss_dssp SCCSGGGCCTTHHHHHHTT
T ss_pred CCCccccCCHHHHHHHHHH
Confidence 4678999999999999986
No 8
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}
Probab=46.16 E-value=5.7 Score=28.07 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=18.1
Q ss_pred hcCCCCCCCCCchhhHHhhhc-CCCCc
Q 031724 42 TKREKPLPSWSPSDVDAFIAT-DPVHG 67 (154)
Q Consensus 42 ~~RdkPLP~Ws~sDVeeFIaS-DPVyG 67 (154)
..+.+|+..||..||.+|+.+ ||=++
T Consensus 17 ~~~~~~v~~Wt~~~V~~WL~~~~~gl~ 43 (106)
T 3bs5_A 17 TTRPKAVYLWTVSDVLKWYRRHCGEYT 43 (106)
T ss_dssp ---CCCGGGCCHHHHHHHHHHHSGGGG
T ss_pred cCCCCCcccCCHHHHHHHHHHHHcchH
Confidence 355677888999999999975 45443
No 9
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=43.40 E-value=11 Score=26.49 Aligned_cols=20 Identities=25% Similarity=0.564 Sum_probs=17.1
Q ss_pred cCCCCCCCCCchhhHHhhhc
Q 031724 43 KREKPLPSWSPSDVDAFIAT 62 (154)
Q Consensus 43 ~RdkPLP~Ws~sDVeeFIaS 62 (154)
.+++++..||..||.+|+..
T Consensus 12 ~~~~~v~~Ws~edV~~WL~~ 31 (97)
T 2d8c_A 12 RTMKEVVYWSPKKVADWLLE 31 (97)
T ss_dssp SCCSCCSSCCTTHHHHHHHH
T ss_pred CCCCchhhCCHHHHHHHHHH
Confidence 45788889999999999874
No 10
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=40.56 E-value=7.2 Score=26.46 Aligned_cols=19 Identities=16% Similarity=0.483 Sum_probs=16.4
Q ss_pred CCCCCCCCCchhhHHhhhc
Q 031724 44 REKPLPSWSPSDVDAFIAT 62 (154)
Q Consensus 44 RdkPLP~Ws~sDVeeFIaS 62 (154)
+.+|++.||..||.+++.+
T Consensus 13 ~~~~v~~Wt~~dV~~WL~~ 31 (91)
T 1v85_A 13 VHKAVDKWTTEEVVLWLEQ 31 (91)
T ss_dssp HHSCGGGCCHHHHHHHHHH
T ss_pred CCCCcccCCHHHHHHHHHH
Confidence 4578888999999999976
No 11
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=39.87 E-value=15 Score=25.44 Aligned_cols=18 Identities=22% Similarity=0.783 Sum_probs=16.3
Q ss_pred CCCCCCCCCchhhHHhhh
Q 031724 44 REKPLPSWSPSDVDAFIA 61 (154)
Q Consensus 44 RdkPLP~Ws~sDVeeFIa 61 (154)
..+|+..||..||.+++.
T Consensus 7 ~~~~v~~Wt~~~V~~WL~ 24 (91)
T 1wwv_A 7 GMEPVETWTPGKVATWLR 24 (91)
T ss_dssp SCCCTTTCCTTTHHHHHH
T ss_pred CCCccccCCHHHHHHHHH
Confidence 467999999999999998
No 12
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=30.51 E-value=23 Score=23.79 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=27.6
Q ss_pred hhhhhhcCCCCCCCCCchhhHHhhhcCCCCchhHHhHHH
Q 031724 37 NYTRFTKREKPLPSWSPSDVDAFIATDPVHGPALKSARE 75 (154)
Q Consensus 37 ~y~~~~~RdkPLP~Ws~sDVeeFIaSDPVyGP~LK~~Re 75 (154)
-|++.+..-+--|.||=+.+-.-|..||-|- .|+++.|
T Consensus 20 ~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY~-al~~~~e 57 (71)
T 1uzc_A 20 AFKELLKEKRVPSNASWEQAMKMIINDPRYS-ALAKLSE 57 (71)
T ss_dssp HHHHHHHHTTCCTTCCHHHHHHHHHTSGGGG-GCSSHHH
T ss_pred HHHHHHHHcCcCCCCCHHHHHHHHccCcccc-ccCCHHH
Confidence 3455555556566699999999999999998 5555443
No 13
>2lc3_A E3 ubiquitin-protein ligase hectd1; helical bundle, structural genomics, northeast structural GE consortium, NESG, structural genomics consortium; NMR {Homo sapiens}
Probab=28.39 E-value=20 Score=26.13 Aligned_cols=19 Identities=26% Similarity=0.657 Sum_probs=16.9
Q ss_pred CCCCCchhhHHhhhcCCCC
Q 031724 48 LPSWSPSDVDAFIATDPVH 66 (154)
Q Consensus 48 LP~Ws~sDVeeFIaSDPVy 66 (154)
.-.||.+.||.++.||+|=
T Consensus 13 ~~~Ws~Eq~~~~L~Sd~lp 31 (88)
T 2lc3_A 13 MGCWSIEHVEQYLGTDELP 31 (88)
T ss_dssp CCCCCHHHHHHHBTSSSBC
T ss_pred cCcchHHHHhccccccccc
Confidence 4579999999999999983
No 14
>2cki_A Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.7A {Methanosarcina acetivorans} PDB: 2j83_A* 3lum_A* 3lun_A*
Probab=27.93 E-value=12 Score=30.17 Aligned_cols=18 Identities=39% Similarity=0.682 Sum_probs=15.5
Q ss_pred HhhhhhhhHHHHHHHHhhc
Q 031724 115 FGWTFGQEFANHYLQLYRM 133 (154)
Q Consensus 115 ~G~~~G~EvAnh~lqLYk~ 133 (154)
.|-|+-|||. |||+||-.
T Consensus 162 ~g~TltHEvG-H~LGL~Ht 179 (262)
T 2cki_A 162 KGRTATHEIG-HWLNLYHI 179 (262)
T ss_dssp SSHHHHHHHH-HHTTCCCT
T ss_pred ccchhhhhhh-hhhcceee
Confidence 4789999997 99999964
No 15
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=27.52 E-value=14 Score=24.03 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=13.3
Q ss_pred CCCCCchhhHHhhhcC
Q 031724 48 LPSWSPSDVDAFIATD 63 (154)
Q Consensus 48 LP~Ws~sDVeeFIaSD 63 (154)
++.||..||.+|+.+=
T Consensus 2 v~~Ws~~~V~~WL~~l 17 (76)
T 2f3n_A 2 LQLWSKFDVGDWLESI 17 (76)
T ss_dssp GGGCCHHHHHHHHHHT
T ss_pred hhhCCHHHHHHHHHHC
Confidence 4579999999999764
No 16
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.86 E-value=14 Score=25.59 Aligned_cols=18 Identities=22% Similarity=0.623 Sum_probs=15.1
Q ss_pred CCCCCCCCchhhHHhhhc
Q 031724 45 EKPLPSWSPSDVDAFIAT 62 (154)
Q Consensus 45 dkPLP~Ws~sDVeeFIaS 62 (154)
.++...||..||.+|+.+
T Consensus 24 ~~~v~~Ws~~~V~~WL~~ 41 (103)
T 2e8o_A 24 HPDYKTWGPEQVCSFLRR 41 (103)
T ss_dssp CSCGGGCHHHHHHHHHHH
T ss_pred ccChhhCCHHHHHHHHHH
Confidence 456777999999999975
No 17
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=22.66 E-value=1.3e+02 Score=19.01 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=19.5
Q ss_pred hhhhhhhhcCCCCCCCCCchhhHHhhh
Q 031724 35 LENYTRFTKREKPLPSWSPSDVDAFIA 61 (154)
Q Consensus 35 l~~y~~~~~RdkPLP~Ws~sDVeeFIa 61 (154)
+++...+++ +.||-.=+..||++|+.
T Consensus 36 ~~~i~p~~g-~~~l~~It~~~i~~~~~ 61 (112)
T 3lys_A 36 LKYLKTYMP-NVLISEITASSYQRALN 61 (112)
T ss_dssp HHHHHHHSS-SCBTTTCCHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHhCCHHHHHHHHH
Confidence 333444444 78999999999999996
No 18
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=22.00 E-value=36 Score=26.37 Aligned_cols=19 Identities=26% Similarity=0.646 Sum_probs=16.3
Q ss_pred CCCCCCCCCchhhHHhhhc
Q 031724 44 REKPLPSWSPSDVDAFIAT 62 (154)
Q Consensus 44 RdkPLP~Ws~sDVeeFIaS 62 (154)
+-.||=.||+.||.+||..
T Consensus 183 ki~PL~~wt~~dV~~Yi~~ 201 (261)
T 2oq2_A 183 KINPLINWTFEQVKQYIDA 201 (261)
T ss_dssp EECTTTTCCHHHHHHHHHH
T ss_pred EEechHhCCHHHHHHHHHH
Confidence 3568889999999999875
No 19
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=21.72 E-value=17 Score=22.81 Aligned_cols=13 Identities=23% Similarity=0.329 Sum_probs=11.4
Q ss_pred CCCchhhHHhhhc
Q 031724 50 SWSPSDVDAFIAT 62 (154)
Q Consensus 50 ~Ws~sDVeeFIaS 62 (154)
.|..+||+++|+.
T Consensus 47 ~w~~~ev~~Wl~~ 59 (66)
T 1z4h_A 47 RWLYRDHCEFKNK 59 (66)
T ss_dssp EEEHHHHHHHHHH
T ss_pred EEeHHHHHHHHHH
Confidence 3999999999974
No 20
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=20.07 E-value=1.1e+02 Score=22.84 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=15.1
Q ss_pred hhhccCcchhHHHhhhhhHHhhhhhhhHHHH
Q 031724 96 WKYSRSLHGTGLSLAAGAVFGWTFGQEFANH 126 (154)
Q Consensus 96 ~kYSks~hGa~ls~l~G~~~G~~~G~EvAnh 126 (154)
+|..|+..+++++.+.|.++ .+++.=+.|-
T Consensus 103 y~k~~~~~~~~~~~i~G~~~-~~i~~~~~n~ 132 (189)
T 3p5n_A 103 YKNKRSTKSLITGLIIATIV-MTIVLSILNY 132 (189)
T ss_dssp HSSSCSHHHHHHHHHHHHHH-HHHHHHHHHT
T ss_pred HHhcccHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 33344455666666665543 3444445553
Done!