Your job contains 1 sequence.
>031725
MATMATPGGVLLGNTSNLPFRRPRLSPKSMVKAVSSSEELGFVTSQLSGIKISYSLPDVA
TPISSRPFAPGLQPIVARRVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGK
RYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 031725
(154 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2051023 - symbol:PRPL28 "plastid ribosomal pro... 511 5.2e-49 1
UNIPROTKB|Q9KVC8 - symbol:rpmB "50S ribosomal protein L28... 144 4.1e-10 1
TIGR_CMR|VC_0218 - symbol:VC_0218 "ribosomal protein L28"... 144 4.1e-10 1
TIGR_CMR|CBU_0291 - symbol:CBU_0291 "ribosomal protein L2... 141 8.4e-10 1
TIGR_CMR|SO_4247 - symbol:SO_4247 "ribosomal protein L28"... 139 1.4e-09 1
GENEDB_PFALCIPARUM|PFE0145w - symbol:PFE0145w "50S riboso... 133 1.4e-08 1
UNIPROTKB|C0H4C3 - symbol:PFE0145w "Organelle ribosomal p... 133 1.4e-08 1
UNIPROTKB|P0A7M2 - symbol:rpmB "50S ribosomal subunit pro... 127 2.6e-08 1
TIGR_CMR|CPS_0209 - symbol:CPS_0209 "ribosomal protein L2... 126 3.3e-08 1
TIGR_CMR|SPO_0974 - symbol:SPO_0974 "ribosomal protein L2... 112 1.0e-06 1
TIGR_CMR|APH_0359 - symbol:APH_0359 "ribosomal protein L2... 106 4.3e-06 1
TIGR_CMR|ECH_0484 - symbol:ECH_0484 "50S ribosomal protei... 106 4.3e-06 1
TIGR_CMR|NSE_0321 - symbol:NSE_0321 "ribosomal protein L2... 103 9.0e-06 1
TIGR_CMR|CJE_0500 - symbol:CJE_0500 "ribosomal protein L2... 97 3.9e-05 1
>TAIR|locus:2051023 [details] [associations]
symbol:PRPL28 "plastid ribosomal protein L28"
species:3702 "Arabidopsis thaliana" [GO:0003735 "structural
constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0019243
"methylglyoxal catabolic process to D-lactate" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] InterPro:IPR001383
Pfam:PF00830 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0016020 GO:GO:0006412 GO:GO:0009941 GO:GO:0003735
EMBL:AC002332 EMBL:AY072373 EMBL:AY114618 EMBL:AY087094
IPI:IPI00533529 PIR:F84745 RefSeq:NP_565765.1 UniGene:At.27539
ProteinModelPortal:O22795 SMR:O22795 IntAct:O22795 STRING:O22795
PaxDb:O22795 PRIDE:O22795 EnsemblPlants:AT2G33450.1 GeneID:817910
KEGG:ath:AT2G33450 GeneFarm:207 TAIR:At2g33450 eggNOG:COG0227
HOGENOM:HOG000040462 InParanoid:O22795 OMA:MATQGAW PhylomeDB:O22795
ProtClustDB:CLSN2688656 Genevestigator:O22795 GermOnline:AT2G33450
GO:GO:0009547 TIGRFAMs:TIGR00009 Uniprot:O22795
Length = 143
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 108/154 (70%), Positives = 122/154 (79%)
Query: 1 MATMATPGGVLLGNTSNLPFRRPRLSPKSMVKAVSSSEELGFVTSQLSGIKISYSLPDVA 60
M TMAT G L R S KSM K+ +S+ELGF+TSQLSG++ISY+ DV
Sbjct: 1 MTTMATQGAWL----------RMTSSAKSMTKSTVTSKELGFLTSQLSGLRISYTPSDVI 50
Query: 61 TPISSRPFAPGLQPIVARRVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGK 120
IS F PG+QPIVARR+CPFTGKK+N+ANKVSFSNHKT K QFVNLQYK+VWWEAGK
Sbjct: 51 NRISLPSF-PGIQPIVARRICPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGK 109
Query: 121 RYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE 154
R+VKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Sbjct: 110 RFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKK 143
>UNIPROTKB|Q9KVC8 [details] [associations]
symbol:rpmB "50S ribosomal protein L28" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR001383 Pfam:PF00830
HAMAP:MF_00373 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
eggNOG:COG0227 TIGRFAMs:TIGR00009 KO:K02902 ProtClustDB:PRK00359
OMA:SHARNAT PIR:D82347 RefSeq:NP_229875.1 ProteinModelPortal:Q9KVC8
SMR:Q9KVC8 PRIDE:Q9KVC8 DNASU:2614563 GeneID:2614563
KEGG:vch:VC0218 PATRIC:20079482 Uniprot:Q9KVC8
Length = 78
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 29/65 (44%), Positives = 41/65 (63%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TGK+ N S + + T +R NLQ + W E+ KR+VKLRL+ K ++ I+K
Sbjct: 3 RVCQVTGKRPAVGNNRSHAKNATKRRFLPNLQTHRFWVESEKRFVKLRLTAKGMRIIDKK 62
Query: 139 GLDAV 143
G+DAV
Sbjct: 63 GIDAV 67
>TIGR_CMR|VC_0218 [details] [associations]
symbol:VC_0218 "ribosomal protein L28" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001383 Pfam:PF00830 HAMAP:MF_00373 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
eggNOG:COG0227 TIGRFAMs:TIGR00009 KO:K02902 ProtClustDB:PRK00359
OMA:SHARNAT PIR:D82347 RefSeq:NP_229875.1 ProteinModelPortal:Q9KVC8
SMR:Q9KVC8 PRIDE:Q9KVC8 DNASU:2614563 GeneID:2614563
KEGG:vch:VC0218 PATRIC:20079482 Uniprot:Q9KVC8
Length = 78
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 29/65 (44%), Positives = 41/65 (63%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TGK+ N S + + T +R NLQ + W E+ KR+VKLRL+ K ++ I+K
Sbjct: 3 RVCQVTGKRPAVGNNRSHAKNATKRRFLPNLQTHRFWVESEKRFVKLRLTAKGMRIIDKK 62
Query: 139 GLDAV 143
G+DAV
Sbjct: 63 GIDAV 67
>TIGR_CMR|CBU_0291 [details] [associations]
symbol:CBU_0291 "ribosomal protein L28" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001383 Pfam:PF00830 HAMAP:MF_00373 GO:GO:0006412
GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
eggNOG:COG0227 HOGENOM:HOG000040462 TIGRFAMs:TIGR00009 KO:K02902
ProtClustDB:PRK00359 OMA:SHARNAT RefSeq:NP_819335.1
ProteinModelPortal:Q83EM4 SMR:Q83EM4 GeneID:1208173
KEGG:cbu:CBU_0291 PATRIC:17929273
BioCyc:CBUR227377:GJ7S-297-MONOMER Uniprot:Q83EM4
Length = 79
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
+VC TGK+ N VS +N KT +R NL+ ++ W KR++ L +ST ++ I+K
Sbjct: 3 KVCQVTGKRPQSGNNVSHANKKTNRRFLPNLKKRRFWLPDEKRFITLTVSTHGMRIIDKL 62
Query: 139 GLDAVAKK 146
G++AV KK
Sbjct: 63 GINAVLKK 70
>TIGR_CMR|SO_4247 [details] [associations]
symbol:SO_4247 "ribosomal protein L28" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001383 Pfam:PF00830 HAMAP:MF_00373 GO:GO:0006412
GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003735
eggNOG:COG0227 HOGENOM:HOG000040462 TIGRFAMs:TIGR00009 KO:K02902
ProtClustDB:PRK00359 OMA:SHARNAT RefSeq:NP_719774.1
ProteinModelPortal:Q8E9M3 SMR:Q8E9M3 GeneID:1171851
KEGG:son:SO_4247 PATRIC:23528134 Uniprot:Q8E9M3
Length = 78
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 28/65 (43%), Positives = 40/65 (61%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TGKK N S + + T +R NLQ + W E KR+V+LR+STK ++ I+K
Sbjct: 3 RVCQVTGKKPMVGNNRSHAKNATRRRFLPNLQNHRFWLEEEKRFVQLRVSTKGIRLIDKK 62
Query: 139 GLDAV 143
G++ V
Sbjct: 63 GIEVV 67
>GENEDB_PFALCIPARUM|PFE0145w [details] [associations]
symbol:PFE0145w "50S ribosomal subunit protein
L28, putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=IDA] [GO:0015934 "large ribosomal subunit"
evidence=ISS] InterPro:IPR001383 Pfam:PF00830 GO:GO:0006412
GO:GO:0003735 EMBL:AL844504 GO:GO:0015934 GO:GO:0020011
TIGRFAMs:TIGR00009 RefSeq:XP_002808674.1 ProteinModelPortal:C0H4C3
EnsemblProtists:PFE0145w:mRNA GeneID:812824 KEGG:pfa:PFE0145w
EuPathDB:PlasmoDB:PF3D7_0503000 HOGENOM:HOG000065881
ProtClustDB:CLSZ2435407 Uniprot:C0H4C3
Length = 262
Score = 133 (51.9 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 79 RVCPFTGKKSN-KANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEK 137
R C GK N A K+S S +T + Q +NL K++++E R++K+++S K LKTI+K
Sbjct: 128 RRCAILGKMDNWNARKISKSGVRTHRIQRLNLINKRIFFEEENRFIKMKVSAKGLKTIKK 187
Query: 138 NGLDAVAKKAGIDLRKE 154
GL KK +D K+
Sbjct: 188 YGLAYCIKKFNLDFSKK 204
>UNIPROTKB|C0H4C3 [details] [associations]
symbol:PFE0145w "Organelle ribosomal protein L28, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0015934 "large
ribosomal subunit" evidence=ISS] [GO:0020011 "apicoplast"
evidence=IDA] InterPro:IPR001383 Pfam:PF00830 GO:GO:0006412
GO:GO:0003735 EMBL:AL844504 GO:GO:0015934 GO:GO:0020011
TIGRFAMs:TIGR00009 RefSeq:XP_002808674.1 ProteinModelPortal:C0H4C3
EnsemblProtists:PFE0145w:mRNA GeneID:812824 KEGG:pfa:PFE0145w
EuPathDB:PlasmoDB:PF3D7_0503000 HOGENOM:HOG000065881
ProtClustDB:CLSZ2435407 Uniprot:C0H4C3
Length = 262
Score = 133 (51.9 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 79 RVCPFTGKKSN-KANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEK 137
R C GK N A K+S S +T + Q +NL K++++E R++K+++S K LKTI+K
Sbjct: 128 RRCAILGKMDNWNARKISKSGVRTHRIQRLNLINKRIFFEEENRFIKMKVSAKGLKTIKK 187
Query: 138 NGLDAVAKKAGIDLRKE 154
GL KK +D K+
Sbjct: 188 YGLAYCIKKFNLDFSKK 204
>UNIPROTKB|P0A7M2 [details] [associations]
symbol:rpmB "50S ribosomal subunit protein L28"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] InterPro:IPR001383
Pfam:PF00830 HAMAP:MF_00373 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:L10328 eggNOG:COG0227
HOGENOM:HOG000040462 TIGRFAMs:TIGR00009 PDB:3J0T PDB:3J0W PDB:3J0Y
PDB:3J11 PDB:3J12 PDB:3J14 PDB:3SGF PDB:3UOS PDBsum:3J0T
PDBsum:3J0W PDBsum:3J0Y PDBsum:3J11 PDBsum:3J12 PDBsum:3J14
PDBsum:3SGF PDBsum:3UOS PDB:1VT2 PDB:2I2T PDB:2I2V PDB:2QAM
PDB:2QAO PDB:2QBA PDB:2QBC PDB:2QBE PDB:2QBG PDB:2QBI PDB:2QBK
PDB:2QOV PDB:2QOX PDB:2QOZ PDB:2QP1 PDB:2WWQ PDB:2Z4L PDB:2Z4N
PDB:3DF2 PDB:3DF4 PDB:3FIK PDB:3I1N PDB:3I1P PDB:3I1R PDB:3I1T
PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU PDB:3J01 PDB:3J19 PDB:3KCR
PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD PDB:3OFQ PDB:3OFR PDB:3OFZ
PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T PDB:4GAR PDB:4GAU PDBsum:1VT2
PDBsum:2I2T PDBsum:2I2V PDBsum:2QAM PDBsum:2QAO PDBsum:2QBA
PDBsum:2QBC PDBsum:2QBE PDBsum:2QBG PDBsum:2QBI PDBsum:2QBK
PDBsum:2QOV PDBsum:2QOX PDBsum:2QOZ PDBsum:2QP1 PDBsum:2WWQ
PDBsum:2Z4L PDBsum:2Z4N PDBsum:3DF2 PDBsum:3DF4 PDBsum:3FIK
PDBsum:3I1N PDBsum:3I1P PDBsum:3I1R PDBsum:3I1T PDBsum:3I20
PDBsum:3I22 PDBsum:3IZT PDBsum:3IZU PDBsum:3J01 PDBsum:3J19
PDBsum:3KCR PDBsum:3OAS PDBsum:3OAT PDBsum:3OFC PDBsum:3OFD
PDBsum:3OFQ PDBsum:3OFR PDBsum:3OFZ PDBsum:3OG0 PDBsum:3ORB
PDBsum:3R8S PDBsum:3R8T PDBsum:4GAR PDBsum:4GAU KO:K02902
ProtClustDB:PRK00359 OMA:SHARNAT EMBL:J01677 PIR:S42443
RefSeq:NP_418094.1 RefSeq:YP_491796.1 ProteinModelPortal:P0A7M2
SMR:P0A7M2 DIP:DIP-35745N IntAct:P0A7M2 MINT:MINT-1306660
PhosSite:P0810433 PaxDb:P0A7M2 PRIDE:P0A7M2
EnsemblBacteria:EBESCT00000004035 EnsemblBacteria:EBESCT00000004036
EnsemblBacteria:EBESCT00000004037 EnsemblBacteria:EBESCT00000004038
EnsemblBacteria:EBESCT00000016963 GeneID:12933571 GeneID:946941
KEGG:ecj:Y75_p3537 KEGG:eco:b3637 PATRIC:32122761 EchoBASE:EB0879
EcoGene:EG10886 BioCyc:EcoCyc:EG10886-MONOMER
BioCyc:ECOL316407:JW3612-MONOMER EvolutionaryTrace:P0A7M2
Genevestigator:P0A7M2 Uniprot:P0A7M2
Length = 78
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TGK+ N S + + T +R NL + W E+ KR+V LR+S K ++ I+K
Sbjct: 3 RVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRVIDKK 62
Query: 139 GLDAV 143
G+D V
Sbjct: 63 GIDTV 67
>TIGR_CMR|CPS_0209 [details] [associations]
symbol:CPS_0209 "ribosomal protein L28" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR001383 Pfam:PF00830 HAMAP:MF_00373 GO:GO:0006412
GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003735
eggNOG:COG0227 HOGENOM:HOG000040462 TIGRFAMs:TIGR00009 KO:K02902
RefSeq:YP_266976.1 ProteinModelPortal:Q48AD7 SMR:Q48AD7
STRING:Q48AD7 DNASU:3520396 GeneID:3520396 KEGG:cps:CPS_0209
PATRIC:21463823 OMA:SHARNAT BioCyc:CPSY167879:GI48-312-MONOMER
Uniprot:Q48AD7
Length = 78
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
++C TGK N S + + T +R NLQ + W E+ R+VKLRL+ K ++ I+K
Sbjct: 3 KICQVTGKVPMVGNNRSHARNATRRRFLPNLQSHRFWVESENRFVKLRLTPKGMRIIDKK 62
Query: 139 GLDAV 143
G+D V
Sbjct: 63 GIDVV 67
>TIGR_CMR|SPO_0974 [details] [associations]
symbol:SPO_0974 "ribosomal protein L28" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR001383
Pfam:PF00830 HAMAP:MF_00373 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 eggNOG:COG0227
TIGRFAMs:TIGR00009 HOGENOM:HOG000040464 KO:K02902 OMA:ELSMRAR
ProtClustDB:PRK00359 RefSeq:YP_166226.1 ProteinModelPortal:Q5LUS9
GeneID:3194737 KEGG:sil:SPO0974 PATRIC:23375235 Uniprot:Q5LUS9
Length = 95
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 76 VARRVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTI 135
++RR C TGK N VS +N+KT +R NL + E R VKLR+S AL+++
Sbjct: 1 MSRR-CELTGKGPMTGNNVSHANNKTRRRFLPNLNDVTLQSETLGRGVKLRISAAALRSV 59
Query: 136 E-KNGLDAVAKKA 147
+ + GLDA KA
Sbjct: 60 DHRGGLDAFLAKA 72
>TIGR_CMR|APH_0359 [details] [associations]
symbol:APH_0359 "ribosomal protein L28" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001383 InterPro:IPR026569 Pfam:PF00830 HAMAP:MF_00373
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000235
GenomeReviews:CP000235_GR eggNOG:COG0227 TIGRFAMs:TIGR00009
RefSeq:YP_504966.1 ProteinModelPortal:Q2GKY5 STRING:Q2GKY5
GeneID:3931037 KEGG:aph:APH_0359 PATRIC:20949320
HOGENOM:HOG000040464 KO:K02902 OMA:ELSMRAR ProtClustDB:PRK00359
BioCyc:APHA212042:GHPM-388-MONOMER PANTHER:PTHR13528 Uniprot:Q2GKY5
Length = 103
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIE-K 137
RVC TG + NKVS SN KT + VNL + E R +++++++ L+TI+ K
Sbjct: 3 RVCDITGASKSFGNKVSHSNRKTKRSYLVNLHNVTLVSEVLGRKFRVKVASRTLRTIDYK 62
Query: 138 NGLD 141
GLD
Sbjct: 63 GGLD 66
>TIGR_CMR|ECH_0484 [details] [associations]
symbol:ECH_0484 "50S ribosomal protein L28" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR001383 Pfam:PF00830 HAMAP:MF_00373
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 eggNOG:COG0227 TIGRFAMs:TIGR00009
HOGENOM:HOG000040464 KO:K02902 OMA:ELSMRAR ProtClustDB:PRK00359
RefSeq:YP_507300.1 ProteinModelPortal:Q2GGY3 STRING:Q2GGY3
GeneID:3927557 KEGG:ech:ECH_0484 PATRIC:20576440
BioCyc:ECHA205920:GJNR-486-MONOMER Uniprot:Q2GGY3
Length = 100
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIE-K 137
RVC TG+ + NKVS SN KT + VNL + + R K ++S++ L+T+ K
Sbjct: 3 RVCDITGQGKSFGNKVSHSNRKTKRAYLVNLHNVTLVSDILNRKFKFKVSSRTLRTVNYK 62
Query: 138 NGLD 141
GLD
Sbjct: 63 GGLD 66
>TIGR_CMR|NSE_0321 [details] [associations]
symbol:NSE_0321 "ribosomal protein L28" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR001383 Pfam:PF00830 HAMAP:MF_00373 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0227 TIGRFAMs:TIGR00009 HOGENOM:HOG000040464 KO:K02902
OMA:ELSMRAR RefSeq:YP_506211.1 ProteinModelPortal:Q2GE85
STRING:Q2GE85 GeneID:3932186 KEGG:nse:NSE_0321 PATRIC:22680733
ProtClustDB:CLSK2528063 BioCyc:NSEN222891:GHFU-347-MONOMER
Uniprot:Q2GE85
Length = 102
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 81 CPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIE-KNG 139
C TG N VS SN KT KR NLQ V+ + K+ + ++S K ++TI+ K G
Sbjct: 5 CDLTGHGWQNGNMVSHSNRKTKKRFMPNLQRVTVFSDVLKQKFRFKVSAKTIRTIDFKGG 64
Query: 140 LD 141
LD
Sbjct: 65 LD 66
>TIGR_CMR|CJE_0500 [details] [associations]
symbol:CJE_0500 "ribosomal protein L28" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR001383 Pfam:PF00830 HAMAP:MF_00373
GO:GO:0006412 GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003735 eggNOG:COG0227 TIGRFAMs:TIGR00009 KO:K02902
ProtClustDB:PRK00359 HOGENOM:HOG000040463 RefSeq:YP_178518.1
ProteinModelPortal:Q5HW17 STRING:Q5HW17 GeneID:3231261
KEGG:cjr:CJE0500 PATRIC:20042712 OMA:LRTMKKQ
BioCyc:CJEJ195099:GJC0-510-MONOMER Uniprot:Q5HW17
Length = 64
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEK 137
RVC TGK N VS +N+KT +R NL+ +V E G K+R++ L+T++K
Sbjct: 3 RVCQITGKGPMVGNNVSHANNKTKRRFLPNLRTVRVTLEDGTTR-KMRIAASTLRTLKK 60
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.130 0.370 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 154 154 0.00088 105 3 11 22 0.37 32
30 0.41 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 14
No. of states in DFA: 569 (61 KB)
Total size of DFA: 125 KB (2080 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.28u 0.12s 14.40t Elapsed: 00:00:01
Total cpu time: 14.28u 0.12s 14.40t Elapsed: 00:00:01
Start: Thu May 9 21:35:32 2013 End: Thu May 9 21:35:33 2013