BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031725
(154 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22795|RK28_ARATH 50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana
GN=RPL28 PE=2 SV=2
Length = 143
Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 108/154 (70%), Positives = 122/154 (79%), Gaps = 11/154 (7%)
Query: 1 MATMATPGGVLLGNTSNLPFRRPRLSPKSMVKAVSSSEELGFVTSQLSGIKISYSLPDVA 60
M TMAT G L R S KSM K+ +S+ELGF+TSQLSG++ISY+ DV
Sbjct: 1 MTTMATQGAWL----------RMTSSAKSMTKSTVTSKELGFLTSQLSGLRISYTPSDVI 50
Query: 61 TPISSRPFAPGLQPIVARRVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGK 120
IS P PG+QPIVARR+CPFTGKK+N+ANKVSFSNHKT K QFVNLQYK+VWWEAGK
Sbjct: 51 NRIS-LPSFPGIQPIVARRICPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGK 109
Query: 121 RYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE 154
R+VKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Sbjct: 110 RFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKK 143
>sp|P30956|RK28_TOBAC 50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum
GN=RPL28 PE=1 SV=1
Length = 151
Score = 179 bits (453), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 90/118 (76%), Positives = 100/118 (84%), Gaps = 1/118 (0%)
Query: 37 SEELGFVTSQLSGIKISYSLPDVATPISSRPFAPGLQPIVARRVCPFTGKKSNKANKVSF 96
S EL FVTSQLSG+KIS + ++ S PF P LQP VARR+CPFTGKKSN+ANKVS
Sbjct: 35 SSELSFVTSQLSGLKISSTHFISSSAPLSVPFKPSLQP-VARRICPFTGKKSNRANKVSH 93
Query: 97 SNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE 154
SNHKT K QFVNLQYK++WWEAGKRYVKLRLSTKA+KTIEKNGLDAVAKKAGIDL K+
Sbjct: 94 SNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLSTKAIKTIEKNGLDAVAKKAGIDLSKK 151
>sp|B8HUV7|RL28_CYAP4 50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC
29141) GN=rpmB PE=3 SV=1
Length = 78
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 59/75 (78%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TGK++N A VS S+ +T K Q VNLQ+K++WW GKR+V+LRLSTKALKT+E
Sbjct: 3 RVCQLTGKRANNAYAVSHSHRRTKKLQEVNLQWKRIWWPQGKRWVRLRLSTKALKTLEHK 62
Query: 139 GLDAVAKKAGIDLRK 153
GLD+ A++AGIDL K
Sbjct: 63 GLDSFAREAGIDLNK 77
>sp|Q8DG62|RL28_THEEB 50S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain
BP-1) GN=rpmB PE=3 SV=2
Length = 78
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 59/75 (78%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TGKK+N A +S S+ +T K Q VNLQ+K+VWW GKR+V+LRLSTKA+KT+E+
Sbjct: 3 RVCQLTGKKANNAYAISHSHRRTKKLQQVNLQWKRVWWPEGKRWVRLRLSTKAIKTLERK 62
Query: 139 GLDAVAKKAGIDLRK 153
GL A AK+AG+DL K
Sbjct: 63 GLSAFAKEAGLDLNK 77
>sp|B7K8R0|RL28_CYAP7 50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7424)
GN=rpmB PE=3 SV=1
Length = 78
Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 58/73 (79%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
R C TGKK+N A +S S+ +T + Q NLQ+K++WWE GKR+VKLRLSTKA+KT+EK
Sbjct: 3 RHCELTGKKANNAFSISHSHRRTKRLQHANLQWKRIWWEEGKRWVKLRLSTKAIKTLEKK 62
Query: 139 GLDAVAKKAGIDL 151
GL ++AK+AGI+L
Sbjct: 63 GLASMAKEAGINL 75
>sp|B1XIH9|RL28_SYNP2 50S ribosomal protein L28 OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=rpmB PE=3 SV=1
Length = 78
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 59/75 (78%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
R C TGKK+N A VS S+ +T K Q VNLQ+K+VWW G R+V+LRLSTKA+KT+EK
Sbjct: 3 RKCQITGKKANNAMAVSHSHRRTKKLQEVNLQWKRVWWPEGNRFVRLRLSTKAIKTLEKK 62
Query: 139 GLDAVAKKAGIDLRK 153
G+DA+A++AGI+L K
Sbjct: 63 GIDAMAREAGINLNK 77
>sp|Q5N223|RL28_SYNP6 50S ribosomal protein L28 OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=rpmB PE=3 SV=1
Length = 78
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 57/75 (76%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TGKK+N A +S S+ +T + Q VNLQ K++WW G R+VKLRLSTKA+KT++K
Sbjct: 3 RVCQLTGKKANNAYAISHSHRRTKRLQNVNLQEKRIWWPEGNRFVKLRLSTKAIKTLQKK 62
Query: 139 GLDAVAKKAGIDLRK 153
GL A A++ GIDL++
Sbjct: 63 GLSAYARELGIDLKR 77
>sp|Q31S95|RL28_SYNE7 50S ribosomal protein L28 OS=Synechococcus elongatus (strain PCC
7942) GN=rpmB PE=3 SV=1
Length = 78
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 57/75 (76%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TGKK+N A +S S+ +T + Q VNLQ K++WW G R+VKLRLSTKA+KT++K
Sbjct: 3 RVCQLTGKKANNAYAISHSHRRTKRLQNVNLQEKRIWWPEGNRFVKLRLSTKAIKTLQKK 62
Query: 139 GLDAVAKKAGIDLRK 153
GL A A++ GIDL++
Sbjct: 63 GLSAYARELGIDLKR 77
>sp|Q2JMK8|RL28_SYNJB 50S ribosomal protein L28 OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=rpmB PE=3 SV=1
Length = 78
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 59/76 (77%), Gaps = 1/76 (1%)
Query: 76 VARRVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTI 135
+ARR C T KK N A +S S+ +T + Q VNLQ+K++WWE GKR+V+LRLSTKALKT+
Sbjct: 1 MARR-CQLTNKKRNNAFAISHSHRRTKRLQEVNLQWKRIWWEEGKRFVRLRLSTKALKTL 59
Query: 136 EKNGLDAVAKKAGIDL 151
+ G+ A+A++AGIDL
Sbjct: 60 KAKGIGAMAREAGIDL 75
>sp|Q2JQF8|RL28_SYNJA 50S ribosomal protein L28 OS=Synechococcus sp. (strain JA-3-3Ab)
GN=rpmB PE=3 SV=1
Length = 78
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 59/76 (77%), Gaps = 1/76 (1%)
Query: 76 VARRVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTI 135
+ARR C T KK N A +S S+ +T + Q VNLQ+K++WWE GKR+V+LRLSTKALKT+
Sbjct: 1 MARR-CQLTNKKRNNAFAISHSHRRTKRLQEVNLQWKRIWWEEGKRFVRLRLSTKALKTL 59
Query: 136 EKNGLDAVAKKAGIDL 151
+ G+ A+A++AGIDL
Sbjct: 60 KAKGIGAMAREAGIDL 75
>sp|Q10X90|RL28_TRIEI 50S ribosomal protein L28 OS=Trichodesmium erythraeum (strain
IMS101) GN=rpmB PE=3 SV=1
Length = 78
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 56/75 (74%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
R C TGKK+N VS S+ +T K Q NLQ+KKVWW GK++VKL+LSTKA+KT++
Sbjct: 3 RKCQLTGKKANNGYSVSHSHIRTHKLQHANLQWKKVWWPQGKKWVKLKLSTKAIKTLQSK 62
Query: 139 GLDAVAKKAGIDLRK 153
G+ A+AK+AGIDL K
Sbjct: 63 GIQAMAKQAGIDLNK 77
>sp|B0JLJ8|RL28_MICAN 50S ribosomal protein L28 OS=Microcystis aeruginosa (strain
NIES-843) GN=rpmB PE=3 SV=1
Length = 78
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 54/73 (73%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TGKK+N A VS S+ +T K Q NLQ+K+VWW G R+VKLR+STKA+KTIEK
Sbjct: 3 RVCTMTGKKANNAYAVSHSHRRTKKLQEANLQWKRVWWSEGNRWVKLRISTKAIKTIEKK 62
Query: 139 GLDAVAKKAGIDL 151
GL A++ G++L
Sbjct: 63 GLAVFAREVGLNL 75
>sp|B7K5N3|RL28_CYAP8 50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 8801)
GN=rpmB PE=3 SV=1
Length = 78
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 55/75 (73%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
R C TGKK+N A VS S+ +T K Q NLQ+K+VWW G R+V+LRLSTKA+KT+E
Sbjct: 3 RKCQLTGKKANNAYAVSHSHRRTKKLQEANLQWKRVWWPEGNRWVRLRLSTKAIKTLETK 62
Query: 139 GLDAVAKKAGIDLRK 153
GL +AK+AGI+L K
Sbjct: 63 GLSVMAKEAGINLNK 77
>sp|Q8YTT3|RL28_NOSS1 50S ribosomal protein L28 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=rpmB PE=3 SV=1
Length = 78
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 57/73 (78%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
R C TGKK+N A VS S+ +T + Q VNLQ K+VWW +G R+VKL+LSTKA+KT+E
Sbjct: 3 RRCDLTGKKANNAFAVSHSHRRTKRLQQVNLQNKRVWWPSGNRWVKLKLSTKAIKTLEVK 62
Query: 139 GLDAVAKKAGIDL 151
GL+A+AK+AGI+L
Sbjct: 63 GLEAMAKEAGINL 75
>sp|B0C811|RL28_ACAM1 50S ribosomal protein L28 OS=Acaryochloris marina (strain MBIC
11017) GN=rpmB PE=3 SV=1
Length = 78
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 54/71 (76%)
Query: 81 CPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGL 140
C TGKK+N A VS S+ +T K Q NLQ+K+VWW KR+VKLRLSTKA+KT+EK GL
Sbjct: 5 CQLTGKKANNAFAVSHSHRRTHKLQEANLQWKRVWWPQEKRWVKLRLSTKAIKTLEKKGL 64
Query: 141 DAVAKKAGIDL 151
A A++AGI+L
Sbjct: 65 AAFAREAGINL 75
>sp|P72851|RL28_SYNY3 50S ribosomal protein L28 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=rpmB PE=3 SV=1
Length = 78
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 58/78 (74%), Gaps = 1/78 (1%)
Query: 76 VARRVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTI 135
+ARR C TGKK+N VS S+ +T K Q NLQ+K+VWW G R+V+LRLST A+KT+
Sbjct: 1 MARR-CQLTGKKANNGFAVSHSHRRTKKLQQANLQWKRVWWPEGNRFVRLRLSTTAIKTL 59
Query: 136 EKNGLDAVAKKAGIDLRK 153
E G++A+AK+AGI+L K
Sbjct: 60 ESKGINAMAKEAGINLNK 77
>sp|Q3MGW8|RL28_ANAVT 50S ribosomal protein L28 OS=Anabaena variabilis (strain ATCC 29413
/ PCC 7937) GN=rpmB PE=3 SV=1
Length = 78
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 56/73 (76%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
R C TGKK+N A VS S+ +T + Q NLQ K+VWW +G R+VKL+LSTKA+KT+E
Sbjct: 3 RRCDLTGKKANNAFAVSHSHRRTKRLQQANLQSKRVWWPSGNRWVKLKLSTKAIKTLEVK 62
Query: 139 GLDAVAKKAGIDL 151
GL+A+AK+AGI+L
Sbjct: 63 GLEAMAKEAGINL 75
>sp|A8G4S4|RL28_PROM2 50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT
9215) GN=rpmB PE=3 SV=1
Length = 78
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 55/75 (73%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TG K+N VS S+ +T K Q VNLQ +++WWE GK++V +++STKALK+I+K
Sbjct: 3 RVCELTGAKANNGMAVSHSHIRTKKLQQVNLQKRRLWWEEGKKWVNIKISTKALKSIQKV 62
Query: 139 GLDAVAKKAGIDLRK 153
GLD AK G+DL+K
Sbjct: 63 GLDKFAKSNGVDLQK 77
>sp|Q7V1H0|RL28_PROMP 50S ribosomal protein L28 OS=Prochlorococcus marinus subsp.
pastoris (strain CCMP1986 / MED4) GN=rpmB PE=3 SV=1
Length = 78
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 55/75 (73%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TG K+N VS S+ +T K Q VNLQ +++WW+ GK++V +++STKALK+I+K
Sbjct: 3 RVCELTGAKANNGMAVSHSHIRTKKLQQVNLQKRRLWWQEGKKWVNIKISTKALKSIQKV 62
Query: 139 GLDAVAKKAGIDLRK 153
GLD VAK G+DL K
Sbjct: 63 GLDKVAKTNGVDLNK 77
>sp|A5GL48|RL28_SYNPW 50S ribosomal protein L28 OS=Synechococcus sp. (strain WH7803)
GN=rpmB PE=3 SV=1
Length = 78
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 51/73 (69%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TG K+N VS S+ +T K Q NLQ +++WW GKR+V LR++T+ALKTI+K
Sbjct: 3 RVCQLTGTKANNGMAVSHSHIRTKKLQQANLQQRRLWWAEGKRWVNLRITTRALKTIQKK 62
Query: 139 GLDAVAKKAGIDL 151
GL A AK GIDL
Sbjct: 63 GLGAYAKSLGIDL 75
>sp|Q31AY7|RL28_PROM9 50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT
9312) GN=rpmB PE=3 SV=1
Length = 78
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 55/75 (73%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TG K+N VS S+ +T K Q VNLQ +++WWE GK++V +++STKALK+++K
Sbjct: 3 RVCELTGAKANNGMAVSHSHIRTKKLQQVNLQKRRLWWEEGKKWVNIKISTKALKSVQKV 62
Query: 139 GLDAVAKKAGIDLRK 153
GLD AK G+DL+K
Sbjct: 63 GLDKFAKSNGVDLKK 77
>sp|A3PCV5|RL28_PROM0 50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT
9301) GN=rpmB PE=3 SV=1
Length = 78
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 54/75 (72%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TG K+N VS S+ +T K Q VNLQ +++WWE GK++V +++STKALK+I+K
Sbjct: 3 RVCELTGAKANNGMAVSHSHIRTKKLQQVNLQKRRLWWEEGKKWVNIKISTKALKSIQKV 62
Query: 139 GLDAVAKKAGIDLRK 153
GLD AK G+DL K
Sbjct: 63 GLDKFAKSNGVDLNK 77
>sp|A5GTS7|RL28_SYNR3 50S ribosomal protein L28 OS=Synechococcus sp. (strain RCC307)
GN=rpmB PE=3 SV=1
Length = 78
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 54/75 (72%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC +GK++N VS S+ +T K Q VNLQ +++WW G R+VKLR+ST AL+TI+K
Sbjct: 3 RVCQLSGKRANNGMAVSHSHVRTKKLQQVNLQQRRLWWAEGNRWVKLRVSTSALRTIQKK 62
Query: 139 GLDAVAKKAGIDLRK 153
GL A AK+ GI+L K
Sbjct: 63 GLGAYAKELGINLAK 77
>sp|A2BWN0|RL28_PROM5 50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT
9515) GN=rpmB PE=3 SV=1
Length = 78
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 55/75 (73%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TG ++N VS S+ +T K Q VNLQ +++WW+ GK+++ +++STKALK+I+K
Sbjct: 3 RVCELTGARANNGMAVSHSHIRTKKLQQVNLQKRRLWWQEGKKWINIKISTKALKSIQKV 62
Query: 139 GLDAVAKKAGIDLRK 153
GLD VAK G+DL K
Sbjct: 63 GLDKVAKTNGVDLNK 77
>sp|A2BR32|RL28_PROMS 50S ribosomal protein L28 OS=Prochlorococcus marinus (strain
AS9601) GN=rpmB PE=3 SV=1
Length = 78
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 54/75 (72%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
R C TG K+N VS S+ +T K Q VNLQ +++WWE GK++V +++STKALK+I+K
Sbjct: 3 RACELTGAKANNGMAVSHSHIRTKKLQQVNLQKRRLWWEEGKKWVNIKISTKALKSIQKV 62
Query: 139 GLDAVAKKAGIDLRK 153
GLD AK G+DL+K
Sbjct: 63 GLDKFAKSNGVDLKK 77
>sp|Q7VC09|RL28_PROMA 50S ribosomal protein L28 OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=rpmB PE=3 SV=2
Length = 78
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 53/75 (70%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC +G ++N VS S+ +T K Q NLQ +++WWE GK+++ +R+ST LKTI+K
Sbjct: 3 RVCELSGTRANNGMAVSHSHIRTKKLQQANLQKRRLWWEEGKKWLNIRVSTSTLKTIQKK 62
Query: 139 GLDAVAKKAGIDLRK 153
GLD+ AK GIDL+K
Sbjct: 63 GLDSYAKSQGIDLKK 77
>sp|Q7V7P3|RL28_PROMM 50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT
9313) GN=rpmB PE=3 SV=1
Length = 78
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 51/75 (68%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TG ++N VS S+ +T K Q NLQ +++WW G R++KLR+ST+ALKTI+K
Sbjct: 3 RVCQLTGTRANNGMAVSHSHIRTKKLQQANLQQRRLWWAEGNRWLKLRVSTRALKTIQKK 62
Query: 139 GLDAVAKKAGIDLRK 153
GL AK GIDL K
Sbjct: 63 GLGVYAKSLGIDLNK 77
>sp|A2C9W0|RL28_PROM3 50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT
9303) GN=rpmB PE=3 SV=1
Length = 78
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 51/75 (68%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TG ++N VS S+ +T K Q NLQ +++WW G R++KLR+ST+ALKTI+K
Sbjct: 3 RVCQLTGTRANNGMAVSHSHIRTKKLQQANLQQRRLWWAEGNRWLKLRVSTRALKTIQKK 62
Query: 139 GLDAVAKKAGIDLRK 153
GL AK GIDL K
Sbjct: 63 GLGVYAKSLGIDLNK 77
>sp|A9BAC7|RL28_PROM4 50S ribosomal protein L28 OS=Prochlorococcus marinus (strain MIT
9211) GN=rpmB PE=3 SV=1
Length = 78
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 54/75 (72%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC +G ++N VS S+ +T K Q NLQ +K+WWE GK+++K+R++T+ LKTI+K
Sbjct: 3 RVCDLSGTRANNGMAVSHSHIRTKKLQQANLQQRKLWWEEGKKWIKVRVTTRTLKTIQKK 62
Query: 139 GLDAVAKKAGIDLRK 153
GL++ AK GIDL K
Sbjct: 63 GLNSYAKAMGIDLSK 77
>sp|Q3AJS3|RL28_SYNSC 50S ribosomal protein L28 OS=Synechococcus sp. (strain CC9605)
GN=rpmB PE=3 SV=1
Length = 78
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 52/75 (69%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TG ++N VS S+ +T K Q NLQ +++WW G R+VKLR++T+ALKTI+K
Sbjct: 3 RVCQLTGTRANNGMAVSHSHIRTKKLQQANLQQRRLWWAEGNRWVKLRVTTRALKTIQKK 62
Query: 139 GLDAVAKKAGIDLRK 153
GL A AK GI+L K
Sbjct: 63 GLGAYAKSLGINLAK 77
>sp|Q0IAB7|RL28_SYNS3 50S ribosomal protein L28 OS=Synechococcus sp. (strain CC9311)
GN=rpmB PE=3 SV=1
Length = 78
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 52/75 (69%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TG ++N VS S+ +T K Q NLQ +++WW GKR++ LR++T+ALKTI+K
Sbjct: 3 RVCQLTGTRANNGMAVSHSHIRTKKLQQANLQQRRLWWAEGKRWINLRITTRALKTIQKK 62
Query: 139 GLDAVAKKAGIDLRK 153
GL A A+ GI+L K
Sbjct: 63 GLGAYARSLGINLAK 77
>sp|Q7U6Q8|RL28_SYNPX 50S ribosomal protein L28 OS=Synechococcus sp. (strain WH8102)
GN=rpmB PE=3 SV=1
Length = 78
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 51/75 (68%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TG ++N VS S+ +T K Q NLQ +++WW GKR+V LR++T+ALKTI+K
Sbjct: 3 RVCQLTGTRANNGMAVSHSHIRTKKLQQANLQNRRLWWAEGKRWVNLRVTTRALKTIQKK 62
Query: 139 GLDAVAKKAGIDLRK 153
GL AK GI+L K
Sbjct: 63 GLGPYAKSLGINLAK 77
>sp|Q3AXY2|RL28_SYNS9 50S ribosomal protein L28 OS=Synechococcus sp. (strain CC9902)
GN=rpmB PE=3 SV=1
Length = 78
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 51/75 (68%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TG ++N VS S+ +T K Q NLQ +++WW G R++KLR++T+ALKTI+K
Sbjct: 3 RVCQLTGTRANNGMAVSHSHIRTKKLQQANLQQRRLWWAEGNRWIKLRVTTRALKTIQKK 62
Query: 139 GLDAVAKKAGIDLRK 153
GL AK GI+L K
Sbjct: 63 GLGPYAKSLGINLAK 77
>sp|Q7NEP1|RL28_GLOVI 50S ribosomal protein L28 OS=Gloeobacter violaceus (strain PCC
7421) GN=rpmB PE=3 SV=2
Length = 81
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 53/75 (70%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
R C TGKK+N A VSFS+ + + Q NLQ+K++W + +V+L+LSTKA+KT+E
Sbjct: 3 RKCMLTGKKANNAYSVSFSHRRNKRLQMANLQWKRIWDDQQGCFVRLKLSTKAIKTLEHR 62
Query: 139 GLDAVAKKAGIDLRK 153
L A+AK+AG+DL K
Sbjct: 63 SLHALAKEAGLDLSK 77
>sp|Q46L31|RL28_PROMT 50S ribosomal protein L28 OS=Prochlorococcus marinus (strain
NATL2A) GN=rpmB PE=3 SV=1
Length = 78
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TG ++N VS S+ +T K Q NLQ +++WWE +++ +R++T+ALKTI+K
Sbjct: 3 RVCQLTGTRANNGMSVSHSHIRTKKLQQANLQQRRLWWEEENKWINIRVTTRALKTIQKK 62
Query: 139 GLDAVAKKAGIDLRK 153
GL AK G+DL K
Sbjct: 63 GLGKYAKSLGVDLNK 77
>sp|A2C226|RL28_PROM1 50S ribosomal protein L28 OS=Prochlorococcus marinus (strain
NATL1A) GN=rpmB PE=3 SV=1
Length = 78
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TG ++N VS S+ +T K Q NLQ +++WWE +++ +R++T+ALKTI+K
Sbjct: 3 RVCQLTGTRANNGMSVSHSHIRTKKLQQANLQQRRLWWEEENKWINIRVTTRALKTIQKK 62
Query: 139 GLDAVAKKAGIDLRK 153
GL AK G+DL K
Sbjct: 63 GLGKYAKSLGVDLNK 77
>sp|A1WIQ4|RL28_VEREI 50S ribosomal protein L28 OS=Verminephrobacter eiseniae (strain
EF01-2) GN=rpmB PE=3 SV=1
Length = 77
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 46/65 (70%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TGKK N VS +N+KT +R NLQY++ W E R+V+LR+S+ AL+ I+KN
Sbjct: 3 RVCDVTGKKPMVGNNVSHANNKTRRRFLPNLQYRRFWVETENRWVRLRVSSAALRLIDKN 62
Query: 139 GLDAV 143
G+DAV
Sbjct: 63 GIDAV 67
>sp|Q3SFR4|RL28_THIDA 50S ribosomal protein L28 OS=Thiobacillus denitrificans (strain
ATCC 25259) GN=rpmB PE=3 SV=1
Length = 78
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 47/65 (72%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TGKK N VS +N+KT +R NLQY++ W E+ R+V+LRLS AL+TI+KN
Sbjct: 3 RVCVVTGKKPMVGNNVSHANNKTKRRFLPNLQYRRFWVESENRWVRLRLSNAALRTIDKN 62
Query: 139 GLDAV 143
G+++V
Sbjct: 63 GIESV 67
>sp|A1TSP7|RL28_ACIAC 50S ribosomal protein L28 OS=Acidovorax citrulli (strain AAC00-1)
GN=rpmB PE=3 SV=1
Length = 77
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 47/65 (72%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TGKK N VS +N+KT +R NLQY++ W E+ R+V+LR+S+ AL+ I+KN
Sbjct: 3 RVCDVTGKKPMVGNNVSHANNKTKRRFLPNLQYRRFWVESENRWVRLRVSSAALRLIDKN 62
Query: 139 GLDAV 143
G+D+V
Sbjct: 63 GIDSV 67
>sp|A1WB79|RL28_ACISJ 50S ribosomal protein L28 OS=Acidovorax sp. (strain JS42) GN=rpmB
PE=3 SV=1
Length = 77
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 47/65 (72%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TGKK N VS +N+KT +R NLQY++ W E+ R+V+LR+S+ AL+ I+KN
Sbjct: 3 RVCEVTGKKPMVGNNVSHANNKTKRRFLPNLQYRRFWVESENRWVRLRVSSAALRLIDKN 62
Query: 139 GLDAV 143
G+D+V
Sbjct: 63 GIDSV 67
>sp|B9MEB7|RL28_ACIET 50S ribosomal protein L28 OS=Acidovorax ebreus (strain TPSY)
GN=rpmB PE=3 SV=1
Length = 77
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 47/65 (72%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TGKK N VS +N+KT +R NLQY++ W E+ R+V+LR+S+ AL+ I+KN
Sbjct: 3 RVCEVTGKKPMVGNNVSHANNKTKRRFLPNLQYRRFWVESENRWVRLRVSSAALRLIDKN 62
Query: 139 GLDAV 143
G+D+V
Sbjct: 63 GIDSV 67
>sp|Q2Y739|RL28_NITMU 50S ribosomal protein L28 OS=Nitrosospira multiformis (strain ATCC
25196 / NCIMB 11849) GN=rpmB PE=3 SV=1
Length = 78
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 47/65 (72%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TGKK + VS +N+KT +R NLQ ++ W E+ +R++ LRLS +AL+TI+KN
Sbjct: 3 RVCEVTGKKPMTGHHVSHANNKTKRRFLPNLQRRRFWVESERRWISLRLSNEALRTIDKN 62
Query: 139 GLDAV 143
G+DAV
Sbjct: 63 GIDAV 67
>sp|A9BNU9|RL28_DELAS 50S ribosomal protein L28 OS=Delftia acidovorans (strain DSM 14801
/ SPH-1) GN=rpmB PE=3 SV=1
Length = 77
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 47/65 (72%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TGKK N VS +N+KT +R NLQY++ W E+ R+V+LR+S+ AL+ I+KN
Sbjct: 3 RVCEVTGKKPMVGNNVSHANNKTKRRFLPNLQYRRFWVESENRWVRLRVSSAALRLIDKN 62
Query: 139 GLDAV 143
G+D+V
Sbjct: 63 GIDSV 67
>sp|A1VS84|RL28_POLNA 50S ribosomal protein L28 OS=Polaromonas naphthalenivorans (strain
CJ2) GN=rpmB PE=3 SV=1
Length = 77
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TGK N VS +N+KT +R NLQY+++W E+ R+V+LR++ L+ I+KN
Sbjct: 3 RVCQVTGKGPMVGNNVSHANNKTKRRFMPNLQYRRIWVESENRWVRLRITAAGLRLIDKN 62
Query: 139 GLDAVAKKAGIDLR 152
G+DAV +DLR
Sbjct: 63 GIDAVL----VDLR 72
>sp|C5CRK1|RL28_VARPS 50S ribosomal protein L28 OS=Variovorax paradoxus (strain S110)
GN=rpmB PE=3 SV=1
Length = 77
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 45/65 (69%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TGK N VS +N+KT +R NLQY++ W E R+V+LR+S+ AL+ I+KN
Sbjct: 3 RVCDVTGKGPMVGNNVSHANNKTKRRFLPNLQYRRFWVETENRWVRLRVSSAALRLIDKN 62
Query: 139 GLDAV 143
G+DAV
Sbjct: 63 GIDAV 67
>sp|Q1H4K4|RL28_METFK 50S ribosomal protein L28 OS=Methylobacillus flagellatus (strain KT
/ ATCC 51484 / DSM 6875) GN=rpmB PE=3 SV=1
Length = 78
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 45/65 (69%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TGKK N VS +N+KT +R NLQ +K W E+ R+V LR++ AL+TI+KN
Sbjct: 3 RVCQVTGKKPMVGNNVSHANNKTKRRFLPNLQNRKFWVESENRWVSLRITNAALRTIDKN 62
Query: 139 GLDAV 143
G+DAV
Sbjct: 63 GIDAV 67
>sp|Q7NSH0|RL28_CHRVO 50S ribosomal protein L28 OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=rpmB PE=3 SV=1
Length = 77
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 45/65 (69%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TGK+ N VS +N+KT +R NLQY+K W E+ R+V+LR+S AL+TI+K
Sbjct: 3 RVCKVTGKRPMTGNNVSHANNKTKRRFLPNLQYRKFWVESENRWVRLRVSNAALRTIDKV 62
Query: 139 GLDAV 143
G+D V
Sbjct: 63 GIDVV 67
>sp|Q47BA8|RL28_DECAR 50S ribosomal protein L28 OS=Dechloromonas aromatica (strain RCB)
GN=rpmB PE=3 SV=1
Length = 77
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TGK NKVS +N++T +R NLQY++ W E+ R+++LR+S L+ I+KN
Sbjct: 3 RVCQVTGKAPMVGNKVSHANNRTKRRFLPNLQYRRFWVESENRFLRLRVSNAGLRLIDKN 62
Query: 139 GLDAV 143
G+DAV
Sbjct: 63 GIDAV 67
>sp|C1DCC0|RL28_LARHH 50S ribosomal protein L28 OS=Laribacter hongkongensis (strain
HLHK9) GN=rpmB PE=3 SV=1
Length = 77
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 46/65 (70%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TGK+ N VS +N+KT +R NLQY++ W E+ R+V++R+S AL+TI+K
Sbjct: 3 RVCKVTGKRPMVGNNVSHANNKTKRRFLPNLQYRRFWVESENRWVRMRVSNAALRTIDKV 62
Query: 139 GLDAV 143
G+DAV
Sbjct: 63 GIDAV 67
>sp|Q7VWY1|RL28_BORPE 50S ribosomal protein L28 OS=Bordetella pertussis (strain Tohama I
/ ATCC BAA-589 / NCTC 13251) GN=rpmB PE=3 SV=1
Length = 78
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 46/65 (70%)
Query: 79 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKN 138
RVC TGK N VS +N+KT +R NLQ ++ W E+ R+V+LR++ KA++TI+KN
Sbjct: 3 RVCQVTGKGPMVGNNVSHANNKTKRRFLPNLQSRRFWVESENRWVRLRVTAKAIRTIDKN 62
Query: 139 GLDAV 143
G+DAV
Sbjct: 63 GIDAV 67
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,658,569
Number of Sequences: 539616
Number of extensions: 1919214
Number of successful extensions: 6321
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 5817
Number of HSP's gapped (non-prelim): 547
length of query: 154
length of database: 191,569,459
effective HSP length: 107
effective length of query: 47
effective length of database: 133,830,547
effective search space: 6290035709
effective search space used: 6290035709
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)