Query 031726
Match_columns 154
No_of_seqs 114 out of 1023
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 04:30:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031726.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031726hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00225 60S ribosomal protein 100.0 4.4E-47 9.4E-52 304.1 17.1 151 1-154 1-151 (214)
2 PTZ00029 60S ribosomal protein 100.0 5.4E-46 1.2E-50 298.1 16.3 152 1-153 1-152 (216)
3 PRK04203 rpl1P 50S ribosomal p 100.0 5.6E-40 1.2E-44 263.1 16.6 148 4-154 2-151 (215)
4 COG0081 RplA Ribosomal protein 100.0 2.2E-40 4.9E-45 265.4 14.0 134 13-153 23-159 (228)
5 CHL00129 rpl1 ribosomal protei 100.0 1.1E-38 2.4E-43 257.7 15.0 133 9-153 22-157 (229)
6 PRK05424 rplA 50S ribosomal pr 100.0 1.3E-37 2.9E-42 251.7 14.6 134 8-153 21-157 (230)
7 TIGR01169 rplA_bact ribosomal 100.0 4.9E-37 1.1E-41 247.9 14.8 134 8-153 20-156 (227)
8 TIGR01170 rplA_mito ribosomal 100.0 3.4E-36 7.3E-41 227.4 14.8 131 13-153 3-140 (141)
9 KOG1570 60S ribosomal protein 100.0 1.6E-32 3.5E-37 216.5 9.3 153 1-153 2-154 (218)
10 cd00403 Ribosomal_L1 Ribosomal 100.0 2.9E-29 6.2E-34 198.8 15.0 141 10-153 2-144 (208)
11 PF00687 Ribosomal_L1: Ribosom 99.9 2.8E-24 6.1E-29 171.2 10.8 130 24-153 16-158 (220)
12 KOG1569 50S ribosomal protein 99.8 3.1E-20 6.8E-25 153.7 11.2 116 29-153 112-237 (323)
13 KOG1685 Uncharacterized conser 98.5 1.4E-07 3E-12 80.3 5.6 124 24-151 48-193 (343)
14 PF13003 MRL1: Ribosomal prote 96.5 0.0072 1.6E-07 45.3 5.3 59 8-68 68-133 (133)
15 TIGR01170 rplA_mito ribosomal 96.4 0.0017 3.7E-08 49.2 2.0 24 117-140 106-130 (141)
16 CHL00129 rpl1 ribosomal protei 95.9 0.0042 9E-08 50.6 1.9 84 29-140 55-147 (229)
17 COG0081 RplA Ribosomal protein 95.6 0.0073 1.6E-07 49.2 2.0 109 3-140 17-149 (228)
18 TIGR01169 rplA_bact ribosomal 95.6 0.0071 1.5E-07 49.1 1.9 24 117-140 122-146 (227)
19 PRK05424 rplA 50S ribosomal pr 95.5 0.007 1.5E-07 49.3 1.8 24 117-140 123-147 (230)
20 PRK04203 rpl1P 50S ribosomal p 88.8 0.28 6.1E-06 39.4 2.0 21 117-137 117-139 (215)
21 PRK01189 V-type ATP synthase s 75.1 10 0.00023 27.1 5.5 80 64-151 4-96 (104)
22 PRK02228 V-type ATP synthase s 71.9 12 0.00025 26.4 5.0 81 63-150 1-92 (100)
23 TIGR00853 pts-lac PTS system, 68.6 20 0.00044 24.9 5.6 51 61-121 2-65 (95)
24 PRK01395 V-type ATP synthase s 68.1 17 0.00037 25.9 5.2 68 63-138 4-75 (104)
25 cd00403 Ribosomal_L1 Ribosomal 60.5 6 0.00013 31.0 1.8 24 115-138 108-132 (208)
26 PRK09590 celB cellobiose phosp 54.6 39 0.00084 24.0 5.1 48 64-119 3-63 (104)
27 PRK00536 speE spermidine synth 50.6 31 0.00067 28.6 4.6 72 60-131 71-169 (262)
28 PF01990 ATP-synt_F: ATP synth 49.8 48 0.0011 22.6 4.9 51 65-121 1-57 (95)
29 PRK13958 N-(5'-phosphoribosyl) 49.3 10 0.00022 30.1 1.5 26 63-88 3-28 (207)
30 COG0135 TrpF Phosphoribosylant 46.9 11 0.00025 30.2 1.4 26 62-87 3-28 (208)
31 cd05565 PTS_IIB_lactose PTS_II 42.5 63 0.0014 22.8 4.6 46 64-119 2-60 (99)
32 PRK01222 N-(5'-phosphoribosyl) 42.4 14 0.00031 29.3 1.3 26 63-88 5-30 (210)
33 COG1436 NtpG Archaeal/vacuolar 41.6 29 0.00062 24.9 2.7 56 63-124 3-64 (104)
34 PF00697 PRAI: N-(5'phosphorib 39.9 19 0.00041 28.1 1.7 26 63-88 1-26 (197)
35 cd05564 PTS_IIB_chitobiose_lic 39.4 94 0.002 21.4 5.0 48 64-121 1-61 (96)
36 PLN02363 phosphoribosylanthran 39.1 17 0.00038 29.9 1.4 27 62-88 48-74 (256)
37 PRK03957 V-type ATP synthase s 37.8 1.3E+02 0.0028 21.0 5.6 53 63-121 1-59 (100)
38 COG1568 Predicted methyltransf 36.5 94 0.002 26.8 5.3 75 53-127 142-243 (354)
39 COG1519 KdtA 3-deoxy-D-manno-o 35.5 1.6E+02 0.0036 26.3 6.9 75 52-126 104-197 (419)
40 PF05991 NYN_YacP: YacP-like N 34.9 62 0.0013 24.7 3.8 86 6-94 21-127 (166)
41 PF10820 DUF2543: Protein of u 33.3 33 0.00071 23.3 1.8 27 71-97 52-78 (81)
42 cd00405 PRAI Phosphoribosylant 32.6 27 0.00058 27.1 1.5 27 63-89 1-27 (203)
43 KOG1198 Zinc-binding oxidoredu 32.5 71 0.0015 27.4 4.2 45 63-112 184-231 (347)
44 COG2257 Uncharacterized homolo 32.3 1.2E+02 0.0027 21.3 4.6 46 49-94 7-58 (92)
45 PRK10499 PTS system N,N'-diace 30.4 1.3E+02 0.0028 21.2 4.6 51 63-123 4-67 (106)
46 KOG2697 Histidinol dehydrogena 30.1 32 0.00068 29.8 1.6 19 116-134 206-226 (446)
47 PRK06063 DNA polymerase III su 30.1 84 0.0018 26.5 4.2 34 61-94 268-305 (313)
48 PTZ00469 60S ribosomal subunit 28.4 2E+02 0.0043 22.9 5.7 58 61-126 95-153 (187)
49 TIGR02922 conserved hypothetic 27.8 39 0.00084 22.3 1.3 26 48-73 30-55 (67)
50 PF01861 DUF43: Protein of unk 26.2 78 0.0017 26.2 3.2 58 61-118 44-124 (243)
51 PF09558 DUF2375: Protein of u 25.8 43 0.00093 22.4 1.3 24 49-72 33-56 (71)
52 PF02302 PTS_IIB: PTS system, 25.7 25 0.00055 23.2 0.2 56 64-125 1-67 (90)
53 PF04951 Peptidase_M55: D-amin 24.5 1.1E+02 0.0024 25.5 3.9 34 6-39 193-226 (265)
54 PRK09427 bifunctional indole-3 23.8 40 0.00086 30.2 1.1 27 62-88 258-284 (454)
55 PF04413 Glycos_transf_N: 3-De 23.7 1.6E+02 0.0035 22.7 4.5 74 52-125 76-168 (186)
56 PF04481 DUF561: Protein of un 22.4 1.3E+02 0.0028 24.8 3.8 52 64-118 63-130 (242)
57 PF08096 Bombolitin: Bomboliti 20.9 51 0.0011 16.0 0.7 12 114-125 4-15 (17)
58 COG2093 DNA-directed RNA polym 20.7 1.1E+02 0.0023 20.2 2.4 23 64-86 35-57 (64)
59 TIGR01101 V_ATP_synt_F vacuola 20.5 3E+02 0.0065 20.0 5.0 59 61-124 4-78 (115)
60 COG5583 Uncharacterized small 20.4 2E+02 0.0044 18.3 3.5 26 5-37 6-31 (54)
61 PRK15452 putative protease; Pr 20.4 2E+02 0.0043 25.7 4.8 26 63-88 4-32 (443)
No 1
>PTZ00225 60S ribosomal protein L10a; Provisional
Probab=100.00 E-value=4.4e-47 Score=304.06 Aligned_cols=151 Identities=50% Similarity=0.807 Sum_probs=145.1
Q ss_pred CCcccHHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCCCCceeeeEEcCCCCCCCcEEEEecChhhHHHHHHc
Q 031726 1 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKI 80 (154)
Q Consensus 1 ~~~~~~~~l~~ai~~~~~~~~~~~~~~f~esvel~i~lk~~d~k~~~~i~g~v~LP~~~~k~~kI~Vf~~~~~~~~Ak~a 80 (154)
|||++++.+.+||+.+++.. ++++|+||||++|+|||+||++++++||+|.|||++|+..+|||||+++++++|+++
T Consensus 1 m~k~~~~~i~~Av~~~lk~~---~~~kF~Etvdl~v~Lk~iDp~kd~~irg~v~LPhg~gk~~kV~v~~~~~~~~~Ak~a 77 (214)
T PTZ00225 1 MSKIPPQTLSEAIQAVLKVD---KERKFKESIDLQVNLKNYDPQKDKRFSGSLKLPNVCRPRMTVCLLCDLVHEDIAKKE 77 (214)
T ss_pred CCcCCHHHHHHHHHHHHHhc---ccCCCCceEEEEEeccCcCCCcCcccceeEECCCCCCCCcEEEEECChHHHHHHHHC
Confidence 89999999999999988644 889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhCCCCCCCCCCCCccCCCCChHHHHHHHhcC
Q 031726 81 GLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLTKNPWSPKSTRLRQQ 154 (154)
Q Consensus 81 Ga~~vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt~v~~~~dl~~~i~~~k~~ 154 (154)
||+++|.+||++++++++.+|||+.+||+|||+|+|||.|||+|||.|+|++|||+++++++|+.+.|++++++
T Consensus 78 Gad~v~~e~l~~l~k~~~~~kkl~~~fD~fiA~~~~m~~lgk~LGp~~~p~gK~P~~~~~~~dl~~~i~~~k~~ 151 (214)
T PTZ00225 78 GVPTMNQEELKKLNKNKKLVKKMCNQYDAFLCSESIIKTVPRLVGPHMHRMGKFPTVCSPSESLPDKVVELRST 151 (214)
T ss_pred CCCEECHHHHHHHHhccHHHHHHHhhCCEEEECHHHHHhhhhhcCCCCCcCCCCCcccCCccCHHHHHHHHhhe
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999863
No 2
>PTZ00029 60S ribosomal protein L10a; Provisional
Probab=100.00 E-value=5.4e-46 Score=298.11 Aligned_cols=152 Identities=66% Similarity=1.027 Sum_probs=146.0
Q ss_pred CCcccHHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCCCCceeeeEEcCCCCCCCcEEEEecChhhHHHHHHc
Q 031726 1 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKI 80 (154)
Q Consensus 1 ~~~~~~~~l~~ai~~~~~~~~~~~~~~f~esvel~i~lk~~d~k~~~~i~g~v~LP~~~~k~~kI~Vf~~~~~~~~Ak~a 80 (154)
||+++++.+++||++++++.+. ++++|+||||++|+|||+|+++++++||+|.|||++|++.+|||||+++.+++|+++
T Consensus 1 m~~~~~~~~~~av~~~~~~~~~-~~~~f~esv~~~i~Lk~id~~~~~~ir~~v~LP~~~gk~~~v~V~a~~~~~~~Ak~a 79 (216)
T PTZ00029 1 MSKLSSEALRKAIAEILEGSEE-KKRKFVETVELQIGLKDYDTQKDKRFSGSVKLPNVPKPNLKVCVLGDAVHCDEAKKL 79 (216)
T ss_pred CCcCCHHHHHHHHHHHHhhccc-cccCCceEEEEEEEcCCCCCCcCcccceeEecCCCCCCCcEEEEECCcHHHHHHHHc
Confidence 8999999999999999986543 899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhCCCCCCCCCCCCccCCCCChHHHHHHHhc
Q 031726 81 GLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLTKNPWSPKSTRLRQ 153 (154)
Q Consensus 81 Ga~~vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt~v~~~~dl~~~i~~~k~ 153 (154)
||++||.+||++..++++..|+|+.+||+|||++++||.|+|+|||+|||++|+|++++.+.|+.+.|+++++
T Consensus 80 Ga~vvg~edL~~~~k~~k~~kkl~~~fD~flA~~~im~~l~riLGp~l~p~~K~P~~v~~~~d~~~~i~~~k~ 152 (216)
T PTZ00029 80 GLDFMDIEGLKKFNKNKKLVKKLAKKYDAFLASQSLLPQIPRLLGPGLNKAGKFPTLITHNDDIEDKINELKS 152 (216)
T ss_pred CCCEecHHHHHHhhhhHHHHhcccccCCEEEECHHHHHHHHHHhccccccCCCCCCcccCccCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999889999999999875
No 3
>PRK04203 rpl1P 50S ribosomal protein L1P; Reviewed
Probab=100.00 E-value=5.6e-40 Score=263.13 Aligned_cols=148 Identities=30% Similarity=0.493 Sum_probs=137.5
Q ss_pred ccHHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCC-CCceeeeEEcCCCCCCCcEEEEecChhhHHHHHHcCC
Q 031726 4 LQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGL 82 (154)
Q Consensus 4 ~~~~~l~~ai~~~~~~~~~~~~~~f~esvel~i~lk~~d~k~-~~~i~g~v~LP~~~~k~~kI~Vf~~~~~~~~Ak~aGa 82 (154)
+++|.+.|||+.+++.. ++++|+||||++|+|||+|+++ ++++||+|.|||+++++.+|||||+++++++|+++||
T Consensus 2 ~~~~~~~eai~~~k~~~---~~~kf~esvel~v~Lk~id~~k~~~~irg~i~LP~~~~k~~~V~vf~~~~~~~~Ak~aGa 78 (215)
T PRK04203 2 MDREKIEEAVKEALEEA---PKRNFTQSVDLIVNLKDIDLKKPENRIDEEVVLPHGRGKEVKIAVIAKGELALQAKEAGA 78 (215)
T ss_pred CcHHHHHHHHHHHHHhc---ccCCCCceEEEEEEecCCCCCccCceeeEEEECCCCCCCCcEEEEEcChHhHHHHHHcCC
Confidence 57899999999987643 7899999999999999999985 8999999999999999999999999999999999999
Q ss_pred C-ccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhCCCCCCCCCCCCccCCCCChHHHHHHHhcC
Q 031726 83 D-YMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLTKNPWSPKSTRLRQQ 154 (154)
Q Consensus 83 ~-~vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt~v~~~~dl~~~i~~~k~~ 154 (154)
+ ++|.++|.++.++++.+|+|+.+||+|||+++|||.|+++||+.|+|++|||++++++.|+.+.|++++++
T Consensus 79 ~~v~~~e~L~~i~~~~k~~rkl~~~fD~~lA~~~im~~l~k~LGk~lgprgkmP~p~~~t~di~~~i~~~~~~ 151 (215)
T PRK04203 79 DYVITREELEELGGDKRAAKKLANEYDFFIAEADLMPLIGRYLGPVLGPRGKMPTPLPPNADIKPLVERLKNT 151 (215)
T ss_pred CEEeCHHHHHHHhcChHHHhhhhhcCCEEEECHHHHHHHHHHHhhhcCcCCCCCCCcCCCCCHHHHHHHHhhc
Confidence 9 66777788888888999999999999999999999999999999999999999999988999999999863
No 4
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-40 Score=265.45 Aligned_cols=134 Identities=31% Similarity=0.478 Sum_probs=119.6
Q ss_pred HHHHHHhhhhhccCCCceeEEEEEEecccCCC-CCCceeeeEEcCCCCCCCcEEEEecChhhHHHHHHcCCCccCHHHHH
Q 031726 13 VSSIVQYSKETKKRNFTETIELQIGLKNYDPQ-KDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLK 91 (154)
Q Consensus 13 i~~~~~~~~~~~~~~f~esvel~i~lk~~d~k-~~~~i~g~v~LP~~~~k~~kI~Vf~~~~~~~~Ak~aGa~~vg~~eL~ 91 (154)
|.+|++.+++.++++|+||||++++| ++|++ .++++||+|.|||++|+..+|||||+++.+++|++|||++||.+||.
T Consensus 23 i~eai~~~ke~~~~kF~etVevav~L-~vD~~k~dq~vrg~VvLP~g~gk~vrV~Vfa~g~~~~~A~~AGad~Vg~edl~ 101 (228)
T COG0081 23 LEEAVKLLKETSKRKFDETVEVAVNL-KVDPRKPDQRVRGSVVLPNGTGKTVRVAVFADGEKAEEAKAAGADYVGGEDLI 101 (228)
T ss_pred HHHHHHHHHhccccCcceEEEEEEEc-ccCCCCcccccceeEECCCCCCCccEEEEEcChHhHHHHHHcCCCEecHHHHH
Confidence 44445555566779999999999999 59997 69999999999999999999999999999999999999999999999
Q ss_pred HHhhchHHHHHhhhcccEEEEchhhHhhhhhhhCCCCCCCCCCCCccC--CCCChHHHHHHHhc
Q 031726 92 KLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLL--TKNPWSPKSTRLRQ 153 (154)
Q Consensus 92 k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt~v~--~~~dl~~~i~~~k~ 153 (154)
+.+++++ ..+||+|||||+|||.+ +.|||.|+|||+||+|++ ++.|+.++|+++|+
T Consensus 102 e~ik~~r-----~~~fD~~IAtpdmM~~v-~~LG~vLGPRGlMP~Pk~gTvt~Dv~~av~~~K~ 159 (228)
T COG0081 102 ELIKNGR-----AKDFDVFIATPDMMPLV-GKLGKVLGPRGLMPNPKTGTVTDDVAKAVEELKK 159 (228)
T ss_pred HHHhCcc-----hhcCCEEEECchHHHHH-HHHhhhcCCCCCCCCCCCCCCCcCHHHHHHHHhc
Confidence 9888774 38999999999999999 678888888888888887 57999999999987
No 5
>CHL00129 rpl1 ribosomal protein L1; Reviewed
Probab=100.00 E-value=1.1e-38 Score=257.75 Aligned_cols=133 Identities=22% Similarity=0.363 Sum_probs=116.6
Q ss_pred HHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCC-CCceeeeEEcCCCCCCCcEEEEecChhhHHHHHHcCCCccCH
Q 031726 9 LREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDV 87 (154)
Q Consensus 9 l~~ai~~~~~~~~~~~~~~f~esvel~i~lk~~d~k~-~~~i~g~v~LP~~~~k~~kI~Vf~~~~~~~~Ak~aGa~~vg~ 87 (154)
+.|||+.+ ++.+.++|+||||++|+| |+|+++ ++++||+|.|||++|++.+|||||+++++++|+++||++||+
T Consensus 22 l~eAi~~~----k~~~~~kF~esvel~i~L-~id~kk~~~~irg~v~LP~~~gk~~kV~Vfa~~~~~~eAk~aGad~vg~ 96 (229)
T CHL00129 22 PEEAINLL----KETATAKFIETAEAHISL-NIDPKYADQQLRTTVTLPKGTGKTIRIAVLTNEEKITEAKNAGADIVGS 96 (229)
T ss_pred HHHHHHHH----HHhCcCCCCccEEEEEEE-CCCCCCCCCceeeEEECCCCCCCCcEEEEECChHhHHHHHHcCCCEeCH
Confidence 45555555 445889999999999999 999994 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhCCCCCCCCCCCCccCCC--CChHHHHHHHhc
Q 031726 88 EGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLTK--NPWSPKSTRLRQ 153 (154)
Q Consensus 88 ~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt~v~~~--~dl~~~i~~~k~ 153 (154)
+||++.++++ ..+||+|||||+|||+|+| |||.|+|+|+||++.++| +|+.++|+++++
T Consensus 97 edLi~~ik~~------~~~fd~~iAt~d~m~~l~k-LgriLGprGlMP~pk~gTvt~di~~~V~~~k~ 157 (229)
T CHL00129 97 DDLIEEITKG------NLDFDLLIATPDMMPKLAK-LGRVLGPRGLMPSPKSGTVTTDLASAINEFKK 157 (229)
T ss_pred HHHHHHHHcC------cccCCEEEECHHHHHHHHH-hcCcccccCCCCCCCCCCccccHHHHHHHHhc
Confidence 9998644433 3899999999999999987 788888888888887776 899999999986
No 6
>PRK05424 rplA 50S ribosomal protein L1; Validated
Probab=100.00 E-value=1.3e-37 Score=251.69 Aligned_cols=134 Identities=23% Similarity=0.361 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCC-CCceeeeEEcCCCCCCCcEEEEecChhhHHHHHHcCCCccC
Q 031726 8 ALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMD 86 (154)
Q Consensus 8 ~l~~ai~~~~~~~~~~~~~~f~esvel~i~lk~~d~k~-~~~i~g~v~LP~~~~k~~kI~Vf~~~~~~~~Ak~aGa~~vg 86 (154)
+|.+||+.+.+ .+.++|+||||++|+| |+|+++ +++|||+|.|||++|++.+|||||+++++++|+++||++||
T Consensus 21 ~l~eAi~~lk~----~~~~kF~esvel~v~L-~id~kK~~~~irg~v~LP~~~gk~~kI~Vfa~~~~~~~Ak~aGa~~vg 95 (230)
T PRK05424 21 SLEEAIALVKE----TATAKFDETVDVAVNL-GVDPRKADQQVRGAVVLPHGTGKTVRVAVFAKGEKAEEAKAAGADIVG 95 (230)
T ss_pred CHHHHHHHHHh----hccCCCCCcEEEEEEe-CCCCCCCCCeeeEEEECCCCCCCCcEEEEECChHhHHHHHHcCCCEeC
Confidence 45666666543 4789999999999999 999996 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhCCCCCCCCCCCCccCCC--CChHHHHHHHhc
Q 031726 87 VEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLTK--NPWSPKSTRLRQ 153 (154)
Q Consensus 87 ~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt~v~~~--~dl~~~i~~~k~ 153 (154)
++||++.++++ + .+||+|||||++||+|++ |||.|+|+|+||++.++| +|+.++|+++++
T Consensus 96 ~eeLi~~ik~~-----~-~~fd~~iat~~~m~~l~~-Lg~iLGPrGlMP~pk~gTv~~di~~~I~~~k~ 157 (230)
T PRK05424 96 GEDLIEKIKGG-----W-LDFDVVIATPDMMGKVGK-LGRILGPRGLMPNPKTGTVTMDVAKAVKEAKA 157 (230)
T ss_pred HHHHHHHHhcC-----C-CcCCEEEECHHHHHHHHH-hccccccccCCCCCCCCCcchhHHHHHHHHhc
Confidence 99998766644 2 589999999999999887 777777777788777765 899999999986
No 7
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast. This model describes bacterial (and chloroplast) ribosomal protein L1. The apparent mitochondrial L1 is sufficiently diverged to be the subject of a separate model.
Probab=100.00 E-value=4.9e-37 Score=247.95 Aligned_cols=134 Identities=25% Similarity=0.383 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCC-CCceeeeEEcCCCCCCCcEEEEecChhhHHHHHHcCCCccC
Q 031726 8 ALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMD 86 (154)
Q Consensus 8 ~l~~ai~~~~~~~~~~~~~~f~esvel~i~lk~~d~k~-~~~i~g~v~LP~~~~k~~kI~Vf~~~~~~~~Ak~aGa~~vg 86 (154)
.+.|||+.+. +.+.++|+||||++|+| |+|+++ +++|||+|.|||++|++.+|||||+++++++|+++||++||
T Consensus 20 ~l~eAi~~lk----~~~~~~f~esvel~i~L-~id~kK~~~~irg~v~LP~~~gk~~kV~Vfa~~~~~~~Ak~aGa~~vg 94 (227)
T TIGR01169 20 SLDEAIALLK----ETATAKFDETVEVAIRL-GIDPRKSDQQVRGTVVLPHGTGKTVRVAVFAKGEKAEEAKAAGADYVG 94 (227)
T ss_pred CHHHHHHHHH----hhccCCCCCCEEEEEEE-CcCCCcCCCeeeEEEECCCCCCCCcEEEEEcCchhHHHHHHcCCCEeC
Confidence 4556666554 44789999999999999 999996 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhCCCCCCCCCCCCccCCC--CChHHHHHHHhc
Q 031726 87 VEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLTK--NPWSPKSTRLRQ 153 (154)
Q Consensus 87 ~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt~v~~~--~dl~~~i~~~k~ 153 (154)
++||++.++++ ..+||+|||||++||+|+ .|||.|+|+|+||++.++| +|+.++|+++++
T Consensus 95 ~~eLi~~ik~~------~~~fd~~iat~~~m~~l~-~Lg~iLGPrGlMP~~k~gtv~~di~~~I~~~k~ 156 (227)
T TIGR01169 95 SDDLIEKIKKG------WLDFDVVIATPDMMRVVG-KLGRILGPRGLMPNPKTGTVTADVAKAVKNAKK 156 (227)
T ss_pred HHHHHHHHHcC------CccCCEEEECHHHHHHHH-HhccccccccCCCCCCCCCccccHHHHHHHHHc
Confidence 99998754443 489999999999999987 5666666666666666554 899999999986
No 8
>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial. This model represents the mitochondrial homolog of bacterial ribosomal protein L1. Unlike chloroplast L1, this form was not sufficiently similar to bacterial forms to include in a single bacterial/organellar L1.
Probab=100.00 E-value=3.4e-36 Score=227.43 Aligned_cols=131 Identities=19% Similarity=0.272 Sum_probs=105.9
Q ss_pred HHHHHHhhhhhccC--CCceeEEEEEEecccCCCCCCceeeeEEcCCCCCCCcEEEEecChhh-HHHHHHcCCCccCHHH
Q 031726 13 VSSIVQYSKETKKR--NFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQH-VEEAEKIGLDYMDVEG 89 (154)
Q Consensus 13 i~~~~~~~~~~~~~--~f~esvel~i~lk~~d~k~~~~i~g~v~LP~~~~k~~kI~Vf~~~~~-~~~Ak~aGa~~vg~~e 89 (154)
|.+|++.+++.... +|+||||++|+| |++.+ ..+|||+|.|||+++++.+|||||++++ +++|+++||+++|++|
T Consensus 3 i~eA~~~lk~~~~~~~~~~etvel~i~L-~~~~~-~~~irg~v~LP~~~~k~~kV~Vf~~~~~~~~~Ak~aGa~~vg~ed 80 (141)
T TIGR01170 3 VIKAFVYLKTKSISMYVPKQSVNLDIGL-LMELG-KESVQGMFSFPHPFGKEPKIAVFTKGASEVEEAREAGADYVGGDD 80 (141)
T ss_pred HHHHHHHHHHhcccCCCCCceEEEEEEE-CCCCC-CCCceEEEECCCCCCCCCEEEEECCChHHHHHHHHcCCCEeCHHH
Confidence 34445555555445 999999999999 77775 3459999999999999999999999987 6889999999999999
Q ss_pred HH-HHhhchHHHHHhhhc-ccEEEEchhhHhhhhhhhCCCCCCCCCCCCccCCC--CChHHHHHHHhc
Q 031726 90 LK-KLNKNKKLVKKLAKK-YHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLTK--NPWSPKSTRLRQ 153 (154)
Q Consensus 90 L~-k~~~~~k~~kkl~~~-~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt~v~~~--~dl~~~i~~~k~ 153 (154)
|+ ++.++| .+ ||+|||||+|||+|+ .||+.|+|+|+||++.++| +|+.++|+++|+
T Consensus 81 Li~~i~~g~-------~~~fd~~iA~~~~m~~l~-~Lg~iLGprGlMP~~k~gTv~~di~~~I~~~k~ 140 (141)
T TIGR01170 81 LIKKIEDGE-------IKPFDYLIAHPDIVPELA-QLRRLLGPKGLMPSPKRGTVGDNLLSMIETFKK 140 (141)
T ss_pred HHHHHhcCC-------cccccEEEECHHHHHHHH-HhhcccccCcCCCCCCCCCcccCHHHHHHHHhC
Confidence 85 555455 55 999999999999987 5666666666666666554 899999999986
No 9
>KOG1570 consensus 60S ribosomal protein L10A [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=1.6e-32 Score=216.45 Aligned_cols=153 Identities=67% Similarity=0.980 Sum_probs=148.2
Q ss_pred CCcccHHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCCCCceeeeEEcCCCCCCCcEEEEecChhhHHHHHHc
Q 031726 1 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKI 80 (154)
Q Consensus 1 ~~~~~~~~l~~ai~~~~~~~~~~~~~~f~esvel~i~lk~~d~k~~~~i~g~v~LP~~~~k~~kI~Vf~~~~~~~~Ak~a 80 (154)
||+++++++.+||.+++..+++.+.++|.|||++|++||||||.++.++.+++.|||.+++..++|||+|..++.+|++.
T Consensus 2 ~sk~~~~~l~~~v~~i~~~~~~~k~~~~~~tielQi~Lk~ydp~Kdkr~s~~~~l~~~~~p~~k~cv~gd~~h~~~ak~~ 81 (218)
T KOG1570|consen 2 SSKVEEEALREAVAEILLRSKEFKNRNFVETIELQINLKNYDPQKDKRFSGSVKLPHAPRPKMKVCVIGDQQHCDEAKAI 81 (218)
T ss_pred CcchhHHHHHHHHHHHHhccccccCccceeeeeeeecccccChhHhCcccceEecCCCCCccceeeeechHHHHHHhhcC
Confidence 68899999999999999888888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhCCCCCCCCCCCCccCCCCChHHHHHHHhc
Q 031726 81 GLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLTKNPWSPKSTRLRQ 153 (154)
Q Consensus 81 Ga~~vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt~v~~~~dl~~~i~~~k~ 153 (154)
|.+++..|+|.+..++++.++++++.||+|||..+++.+|+|+|||||...||+|+++.+++||.+.+++.++
T Consensus 82 ~~p~m~~d~lkklnk~Kklvkklakky~~flase~~ikQlpr~lgp~l~kaGkfps~l~~~d~l~akv~evk~ 154 (218)
T KOG1570|consen 82 DLPAMDIDALKKLNKNKKLVKKLAKKYDAFLASESLIKQLPRILGPGLSKAGKFPSLLVHGDSLYAKVEEVKS 154 (218)
T ss_pred CCCCcCHHHHhcCcccchHHHHHHHHhhhHHhhHHHHHHhhhhhcccccccccCCccccchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998774
No 10
>cd00403 Ribosomal_L1 Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA. In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds its own mRNA. Like several other large ribosomal subunit proteins, L1 displays RNA chaperone activity. L1 is one of the largest ribosomal proteins. It is composed of two domains that cycle between open and closed conformations via a hinge motion. The RNA-binding site of L1 is highly conserved, with both mRNA and rRNA binding the same binding site.
Probab=99.96 E-value=2.9e-29 Score=198.77 Aligned_cols=141 Identities=35% Similarity=0.498 Sum_probs=126.9
Q ss_pred HHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCCCCceeeeEEcCCCCCCCcEEEEecChhhHHHHHHcCCCccCHHH
Q 031726 10 REAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEG 89 (154)
Q Consensus 10 ~~ai~~~~~~~~~~~~~~f~esvel~i~lk~~d~k~~~~i~g~v~LP~~~~k~~kI~Vf~~~~~~~~Ak~aGa~~vg~~e 89 (154)
.+||+.+.+... ..++|+|+|+|+|+|+.++.++++++++.|.|||+++++.+|||||+++++++|+++|++++|+++
T Consensus 2 ~~Ai~~l~~~~~--~~~~~~~~v~l~i~l~~~~~~~~~~~~~~i~LPh~~~~~~~i~v~~~d~~~~~a~~~~a~vig~~~ 79 (208)
T cd00403 2 EEAIKALKKTSV--KKRKFDETVELQINLKKDDRKKDQRIRGTVILPHGLGKDVKVCVFAKDEQAKEAKAAGADVVGGED 79 (208)
T ss_pred HHHHHHHHHhcc--ccCCCCceEEEEEEeCCCCCccccccceeEECCCCCCCCeEEEEEcChHhHHHHHHcCCCEEcHHH
Confidence 466777655331 477999999999999877756789999999999999999999999999999999999999999999
Q ss_pred HHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhCCCCCCCCCCCCccCC--CCChHHHHHHHhc
Q 031726 90 LKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLT--KNPWSPKSTRLRQ 153 (154)
Q Consensus 90 L~k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt~v~~--~~dl~~~i~~~k~ 153 (154)
|++.+++++.+ +|+.+||+|||++++|+.+.+.||+.|+|++|||+++.+ ++|+.+.|+++++
T Consensus 80 L~~~~~~~~~~-~l~~~~D~fla~~~~~~~~~~~lgk~~~~k~k~P~~~~~t~~~~l~~~i~~~~~ 144 (208)
T cd00403 80 LKKKIKNGEAK-KLAKDFDLFLADPRIMMLLPKLLGKVLGPRGKMPNPKTGTVTEDLAKAIEEAKS 144 (208)
T ss_pred HHHHhhcchhh-hhhhcCCEEEECHHHHHHHHHHhccccccCCCCCcCCCCCCcccHHHHHHHHHh
Confidence 99888888877 999999999999999999999999999999999999987 6899999999875
No 11
>PF00687 Ribosomal_L1: Ribosomal protein L1p/L10e family; InterPro: IPR002143 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L1 is the largest protein from the large ribosomal subunit. The L1 protein contains two domains: 2-layer alpha/beta domain and a 3-layer alpha/beta domain (interrupts the first domain). In Escherichia coli, L1 is known to bind to the 23S rRNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups: Eubacterial L1. Algal and plant chloroplast L1. Cyanelle L1. Archaebacterial L1. Vertebrate L10A. Yeast SSM1. ; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3QOY_A 3BBO_D 1VSA_A 1VSP_A 2NOQ_G 3IZS_A 1S1I_A 3O5H_A 3O58_A 2WRL_C ....
Probab=99.91 E-value=2.8e-24 Score=171.20 Aligned_cols=130 Identities=32% Similarity=0.456 Sum_probs=113.7
Q ss_pred ccCCCceeEEEEEEecccCCCCCCce-eeeEEcCCCCC-CCcEEEEecChhhHH---------HHHHcCCCccCHHHHHH
Q 031726 24 KKRNFTETIELQIGLKNYDPQKDKRF-SGSVKLPHIPR-PKMKVCMLGDAQHVE---------EAEKIGLDYMDVEGLKK 92 (154)
Q Consensus 24 ~~~~f~esvel~i~lk~~d~k~~~~i-~g~v~LP~~~~-k~~kI~Vf~~~~~~~---------~Ak~aGa~~vg~~eL~k 92 (154)
...+|+++|+|+|+++.++.+.+.++ ++.|.|||+++ +..+||||+++.+.. ++.++|+.++|+++|.+
T Consensus 16 ~~~~~~~~v~l~i~~~~~~~~~~~~~~~~~i~LPh~~~~~~~~vcli~~d~~~~~~~~~~~~~~~~~~~~~vi~~~~L~~ 95 (220)
T PF00687_consen 16 EDDNFDESVYLQITLKKIPKKKDKSFKPGRIPLPHPLYIKNSKVCLIVKDPQKKAKEKEKLEEKAVEAGAKVIGGEELKK 95 (220)
T ss_dssp CCSSSSTEEEEEEEESSSTTSSCTST-EEEEEBSTSSS-SSSBEEEEESCHHHHHH-------HHHHTTCSEEECHHHHH
T ss_pred ccCCCCcEEEEEEEeCcCCCccccccccceeeecCCCCCCccEEEEEecCcchhhhhhhhhhhhhhhcccceecHHHHHH
Confidence 67799999999999987777767788 99999999998 889999999766533 35688999999999998
Q ss_pred HhhchHHHHHhhhcccEEEEchhhHhhhhhhhCCCC-CCCCCCCCccCC-CCChHHHHHHHhc
Q 031726 93 LNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGL-NKAGNSLPLLLT-KNPWSPKSTRLRQ 153 (154)
Q Consensus 93 ~~~~~k~~kkl~~~~d~~ia~~~~m~~l~r~LGpgL-~p~~K~pt~v~~-~~dl~~~i~~~k~ 153 (154)
..+..+..|+|+.+||+|||++++|+.|++.||+.| +|++|||++|.. ++|+.+.|+++.+
T Consensus 96 ~~~~~~~~r~l~~~~d~flad~~i~~~l~~~Lgk~~~~~k~k~P~~v~~~~~~l~~~i~~~~~ 158 (220)
T PF00687_consen 96 KYKTIEAKRKLAKSYDFFLADPRIMPKLPKLLGKIFYGKKGKMPIPVTLSKEDLKEQIEKALN 158 (220)
T ss_dssp HHCHHHHCHHHHHCSSEEEEEGGGHHHHHHHTHHHH-CCTTTSCEEBSSHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcCEEEECHHHHHHHHHhhhhheecccCCcceEEeccchhHHHHHHHHHC
Confidence 755566677899999999999999999999999988 899999999976 3799999998864
No 12
>KOG1569 consensus 50S ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=3.1e-20 Score=153.73 Aligned_cols=116 Identities=20% Similarity=0.305 Sum_probs=96.9
Q ss_pred ceeEEEEEEecccCCC----CCCceeeeEEcCCCCC--CCcEEEEecCh-hhHHHHHHcCCCccCHHHHHHHhhchHHHH
Q 031726 29 TETIELQIGLKNYDPQ----KDKRFSGSVKLPHIPR--PKMKVCMLGDA-QHVEEAEKIGLDYMDVEGLKKLNKNKKLVK 101 (154)
Q Consensus 29 ~esvel~i~lk~~d~k----~~~~i~g~v~LP~~~~--k~~kI~Vf~~~-~~~~~Ak~aGa~~vg~~eL~k~~~~~k~~k 101 (154)
.+++.+.++| |+... +...+.+.+..|||++ ...+|+||+++ ...++|+++||+++||.||++.+++++
T Consensus 112 k~~~~l~i~l-~~~a~~~~k~~~~~~~~v~vP~Pf~~ge~r~IavFtn~~~kveeArEaGA~l~GG~dLIkkI~~Ge--- 187 (323)
T KOG1569|consen 112 KQPVNLRIEL-NMLAEKETKGVAPLQGSVTVPHPFAHGEIRKIAVFTNDASKVEEAREAGAALAGGTDLIKKIKSGE--- 187 (323)
T ss_pred CCceeeeEEe-eeeeeeeccccCCCceeEeccccCCCCceEEEEEecCChHHHHHHHhccccccccHHHHHHhhcCe---
Confidence 3667777776 45443 3677889999999994 46689999988 678999999999999999887777774
Q ss_pred HhhhcccEEEEchhhHhhhh---hhhCCCCCCCCCCCCccCCCCChHHHHHHHhc
Q 031726 102 KLAKKYHAFLASESVIKQIP---RLLGPGLNKAGNSLPLLLTKNPWSPKSTRLRQ 153 (154)
Q Consensus 102 kl~~~~d~~ia~~~~m~~l~---r~LGpgL~p~~K~pt~v~~~~dl~~~i~~~k~ 153 (154)
+.-+||+++|+|||||.|. ++|||. ||+.|.+|+ ++||.++|+++++
T Consensus 188 -i~~Dyd~~vA~Pdim~~l~~Lr~iL~~r-~Pn~k~gtv---g~nipemieeFk~ 237 (323)
T KOG1569|consen 188 -IVADYDFYVAHPDIMPELNRLRKILGPR-FPNPKRGTV---GRNIPEMIEEFKN 237 (323)
T ss_pred -EEEeeceeeecchHHHHHHHHHHHhccc-CCCcccCcc---ccchHHHHHHhhC
Confidence 5677999999999999864 889988 888888887 8999999999986
No 13
>KOG1685 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=1.4e-07 Score=80.31 Aligned_cols=124 Identities=18% Similarity=0.256 Sum_probs=90.0
Q ss_pred ccCCCceeEEEEEEecccCCCCCCceeeeEEcCCCC----C--CCcEEEEecChhhH---------HHHHHcCCC----c
Q 031726 24 KKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIP----R--PKMKVCMLGDAQHV---------EEAEKIGLD----Y 84 (154)
Q Consensus 24 ~~~~f~esvel~i~lk~~d~k~~~~i~g~v~LP~~~----~--k~~kI~Vf~~~~~~---------~~Ak~aGa~----~ 84 (154)
...++...++++.+.. .-. +.++. .|.+||.+ - ....||+|.++.+. +.-.++|++ +
T Consensus 48 ~~~k~~~~~~~~k~~~-~~~-~~n~~--~IP~k~~~~~~~~~~~~~~vcLIvkD~~~~~~t~~~~~d~l~~~gi~~itkV 123 (343)
T KOG1685|consen 48 EALKNVYKVVLQKNTP-QKV-GTNKL--KIPLKHLLKKLLLKHDDTDVCLIVKDLQQSYLTEEDAEDLLESEGIKSITKV 123 (343)
T ss_pred hhhhhhHHHHHHHhcc-ccc-ccccc--cccCcchhcccccCCCCCceEEEecCchhccccHHHHHHHHHHcCCccceee
Confidence 3345666666666651 111 12222 23355544 2 46799999986432 444577988 8
Q ss_pred cCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhCCCCCCCCCCCCccCCC-CC--hHHHHHHH
Q 031726 85 MDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLTK-NP--WSPKSTRL 151 (154)
Q Consensus 85 vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt~v~~~-~d--l~~~i~~~ 151 (154)
++..+|....+..+..++|+.+||+|||+.+++|.|+++||+.++...|.|.++.-. .+ +.+.|++.
T Consensus 124 I~~~~LK~~yksyeaKr~L~~sfDlflaD~RV~~~LP~llGK~f~q~kk~Pv~i~l~k~~~~l~~qi~~a 193 (343)
T KOG1685|consen 124 ISLSKLKRDYKSYEAKRKLLSSFDLFLADDRVIPLLPKLLGKEFYQKKKVPVSIRLSKKNELLKQQIENA 193 (343)
T ss_pred eehHHHHHHHHHHHHHHHHHhhccEEEEcchhHhHHHHHhhhhhcccccCceEEEecccchHHHHHHHHH
Confidence 899999988888899999999999999999999999999999999999999987542 23 67777664
No 14
>PF13003 MRL1: Ribosomal protein L1; InterPro: IPR024663 This entry represents a ribosomal protein L1 domain found mainly in chordates.
Probab=96.46 E-value=0.0072 Score=45.32 Aligned_cols=59 Identities=22% Similarity=0.340 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhhhhccCCCc---eeEEEEEEecccCCC---CCCceeeeEEcCCCCCCCc-EEEEe
Q 031726 8 ALREAVSSIVQYSKETKKRNFT---ETIELQIGLKNYDPQ---KDKRFSGSVKLPHIPRPKM-KVCML 68 (154)
Q Consensus 8 ~l~~ai~~~~~~~~~~~~~~f~---esvel~i~lk~~d~k---~~~~i~g~v~LP~~~~k~~-kI~Vf 68 (154)
.+++ |+.|++.++..+.-+|+ |.|.+.++| |+-+- +..+|-+.|.|||++-.+. +|+||
T Consensus 68 ~Iye-ve~Ai~mLKkfQ~lDfT~pkQ~VYldL~L-dm~l~KKkkVePF~s~i~lPypF~~eiNKv~VF 133 (133)
T PF13003_consen 68 PIYE-VEKAIDMLKKFQILDFTSPKQPVYLDLTL-DMKLEKKKKVEPFASVILLPYPFTSEINKVLVF 133 (133)
T ss_pred cHHH-HHHHHHHHHhcccccCCCCCCcEEEeeee-hhhhccccccCCCccceecccccccccceeeeC
Confidence 3454 66677666655666666 889999998 44443 2778999999999995555 88887
No 15
>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial. This model represents the mitochondrial homolog of bacterial ribosomal protein L1. Unlike chloroplast L1, this form was not sufficiently similar to bacterial forms to include in a single bacterial/organellar L1.
Probab=96.45 E-value=0.0017 Score=49.21 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.0
Q ss_pred HhhhhhhhCC-CCCCCCCCCCccCC
Q 031726 117 IKQIPRLLGP-GLNKAGNSLPLLLT 140 (154)
Q Consensus 117 m~~l~r~LGp-gL~p~~K~pt~v~~ 140 (154)
++.|||+||| ||||+.|.||++..
T Consensus 106 l~~Lg~iLGprGlMP~~k~gTv~~d 130 (141)
T TIGR01170 106 LAQLRRLLGPKGLMPSPKRGTVGDN 130 (141)
T ss_pred HHHhhcccccCcCCCCCCCCCcccC
Confidence 4469999999 99999999998765
No 16
>CHL00129 rpl1 ribosomal protein L1; Reviewed
Probab=95.94 E-value=0.0042 Score=50.60 Aligned_cols=84 Identities=19% Similarity=0.277 Sum_probs=48.1
Q ss_pred ceeEEEEEEecccCCCCCCceeeeEEcCCCCC----CCcEEEEecChhhHHHHHHcCCC----ccCHHHHHHHhhchHHH
Q 031726 29 TETIELQIGLKNYDPQKDKRFSGSVKLPHIPR----PKMKVCMLGDAQHVEEAEKIGLD----YMDVEGLKKLNKNKKLV 100 (154)
Q Consensus 29 ~esvel~i~lk~~d~k~~~~i~g~v~LP~~~~----k~~kI~Vf~~~~~~~~Ak~aGa~----~vg~~eL~k~~~~~k~~ 100 (154)
++.|.=.|.|.+ ...++.+ .++|-.+-. ++--.-+++.++..+.+++ |+. ++...++...
T Consensus 55 ~~~irg~v~LP~-~~gk~~k---V~Vfa~~~~~~eAk~aGad~vg~edLi~~ik~-~~~~fd~~iAt~d~m~~------- 122 (229)
T CHL00129 55 DQQLRTTVTLPK-GTGKTIR---IAVLTNEEKITEAKNAGADIVGSDDLIEEITK-GNLDFDLLIATPDMMPK------- 122 (229)
T ss_pred CCceeeEEECCC-CCCCCcE---EEEECChHhHHHHHHcCCCEeCHHHHHHHHHc-CcccCCEEEECHHHHHH-------
Confidence 567777788831 1222333 477766531 1112234444555555544 442 3444443321
Q ss_pred HHhhhcccEEEEchhhHhhhhhhhCC-CCCCCCCCCCccCC
Q 031726 101 KKLAKKYHAFLASESVIKQIPRLLGP-GLNKAGNSLPLLLT 140 (154)
Q Consensus 101 kkl~~~~d~~ia~~~~m~~l~r~LGp-gL~p~~K~pt~v~~ 140 (154)
++.|||+||| ||||++|.||++..
T Consensus 123 ----------------l~kLgriLGprGlMP~pk~gTvt~d 147 (229)
T CHL00129 123 ----------------LAKLGRVLGPRGLMPSPKSGTVTTD 147 (229)
T ss_pred ----------------HHHhcCcccccCCCCCCCCCCcccc
Confidence 4559999999 99999999997655
No 17
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=95.58 E-value=0.0073 Score=49.16 Aligned_cols=109 Identities=17% Similarity=0.231 Sum_probs=65.5
Q ss_pred cccHHHHHHHHHHHHHhhhhh-------------ccCCCceeEEEEEEecccCCCCCCceeeeEEcCCCCCCCc-EE---
Q 031726 3 KLQSDALREAVSSIVQYSKET-------------KKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM-KV--- 65 (154)
Q Consensus 3 ~~~~~~l~~ai~~~~~~~~~~-------------~~~~f~esvel~i~lk~~d~k~~~~i~g~v~LP~~~~k~~-kI--- 65 (154)
+.+...|.+||+.+.+..... -.++=+|.|.=.|.| |.+.-+-...+++.++-..+. +=
T Consensus 17 ~~~~~~i~eai~~~ke~~~~kF~etVevav~L~vD~~k~dq~vrg~VvL----P~g~gk~vrV~Vfa~g~~~~~A~~AGa 92 (228)
T COG0081 17 RNKLYSLEEAVKLLKETSKRKFDETVEVAVNLKVDPRKPDQRVRGSVVL----PNGTGKTVRVAVFADGEKAEEAKAAGA 92 (228)
T ss_pred hhhhhhHHHHHHHHHhccccCcceEEEEEEEcccCCCCcccccceeEEC----CCCCCCccEEEEEcChHhHHHHHHcCC
Confidence 456778999999998755321 233556888888898 333222223477887642111 11
Q ss_pred -EEecChhhHHHHHHcC-CC----ccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhCC-CCCCCCCCCCcc
Q 031726 66 -CMLGDAQHVEEAEKIG-LD----YMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGP-GLNKAGNSLPLL 138 (154)
Q Consensus 66 -~Vf~~~~~~~~Ak~aG-a~----~vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~r~LGp-gL~p~~K~pt~v 138 (154)
.|.. ++..+.++. | +. ++-..++..++ ..||++||| ||||++|.||+-
T Consensus 93 d~Vg~-edl~e~ik~-~r~~~fD~~IAtpdmM~~v-----------------------~~LG~vLGPRGlMP~Pk~gTvt 147 (228)
T COG0081 93 DYVGG-EDLIELIKN-GRAKDFDVFIATPDMMPLV-----------------------GKLGKVLGPRGLMPNPKTGTVT 147 (228)
T ss_pred CEecH-HHHHHHHhC-cchhcCCEEEECchHHHHH-----------------------HHHhhhcCCCCCCCCCCCCCCC
Confidence 1333 444444443 3 21 34444443332 568999999 999999999886
Q ss_pred CC
Q 031726 139 LT 140 (154)
Q Consensus 139 ~~ 140 (154)
+.
T Consensus 148 ~D 149 (228)
T COG0081 148 DD 149 (228)
T ss_pred cC
Confidence 54
No 18
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast. This model describes bacterial (and chloroplast) ribosomal protein L1. The apparent mitochondrial L1 is sufficiently diverged to be the subject of a separate model.
Probab=95.56 E-value=0.0071 Score=49.12 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.6
Q ss_pred HhhhhhhhCC-CCCCCCCCCCccCC
Q 031726 117 IKQIPRLLGP-GLNKAGNSLPLLLT 140 (154)
Q Consensus 117 m~~l~r~LGp-gL~p~~K~pt~v~~ 140 (154)
++.|||+||| ||||+.+.||++..
T Consensus 122 l~~Lg~iLGPrGlMP~~k~gtv~~d 146 (227)
T TIGR01169 122 VGKLGRILGPRGLMPNPKTGTVTAD 146 (227)
T ss_pred HHHhccccccccCCCCCCCCCcccc
Confidence 4469999999 99999999997654
No 19
>PRK05424 rplA 50S ribosomal protein L1; Validated
Probab=95.54 E-value=0.007 Score=49.27 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=20.6
Q ss_pred HhhhhhhhCC-CCCCCCCCCCccCC
Q 031726 117 IKQIPRLLGP-GLNKAGNSLPLLLT 140 (154)
Q Consensus 117 m~~l~r~LGp-gL~p~~K~pt~v~~ 140 (154)
++.|||+||| ||||+++.||+...
T Consensus 123 l~~Lg~iLGPrGlMP~pk~gTv~~d 147 (230)
T PRK05424 123 VGKLGRILGPRGLMPNPKTGTVTMD 147 (230)
T ss_pred HHHhccccccccCCCCCCCCCcchh
Confidence 4559999999 99999999997654
No 20
>PRK04203 rpl1P 50S ribosomal protein L1P; Reviewed
Probab=88.80 E-value=0.28 Score=39.40 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=18.4
Q ss_pred Hhh-hhhhhCC-CCCCCCCCCCc
Q 031726 117 IKQ-IPRLLGP-GLNKAGNSLPL 137 (154)
Q Consensus 117 m~~-l~r~LGp-gL~p~~K~pt~ 137 (154)
++. |||+||| |+||+++.+|.
T Consensus 117 l~k~LGk~lgprgkmP~p~~~t~ 139 (215)
T PRK04203 117 IGRYLGPVLGPRGKMPTPLPPNA 139 (215)
T ss_pred HHHHHhhhcCcCCCCCCCcCCCC
Confidence 554 8999999 99999999985
No 21
>PRK01189 V-type ATP synthase subunit F; Provisional
Probab=75.14 E-value=10 Score=27.07 Aligned_cols=80 Identities=15% Similarity=0.225 Sum_probs=50.5
Q ss_pred EEEEecChhhHHHHHHcCCC---ccCHHH-HHHHhhchHHHHHhh-hcccEEEEchhhHhhhhh-hhCCCCCCCCCCCCc
Q 031726 64 KVCMLGDAQHVEEAEKIGLD---YMDVEG-LKKLNKNKKLVKKLA-KKYHAFLASESVIKQIPR-LLGPGLNKAGNSLPL 137 (154)
Q Consensus 64 kI~Vf~~~~~~~~Ak~aGa~---~vg~~e-L~k~~~~~k~~kkl~-~~~d~~ia~~~~m~~l~r-~LGpgL~p~~K~pt~ 137 (154)
+|+|++|.+..-=-+-+|.+ .+..+| ..++ .+.|+ .+|=.++.|.++...+.+ .+- - +.+...|.+
T Consensus 4 kIaVvGd~DtilGFrlaGi~~v~~~~~~e~~~~~------~~~l~~~~~gII~iTE~~a~~i~~~~i~-~-~~~~~~P~I 75 (104)
T PRK01189 4 CITVIGERDVVLGFRLLGIGDTIEAEGKDLVKKF------LEIFNNPKCKYIFVSESTKNMFDKNTLR-S-LESSSKPLV 75 (104)
T ss_pred eEEEEcCHHHHHHHHHcCCceEEEcCCHHHHHHH------HHHHhcCCeEEEEEEHHHHhhCCHHHHH-H-HhccCCCeE
Confidence 79999999988888889996 333333 3222 23354 559999999999988872 221 1 224566666
Q ss_pred c---CCC----CChHHHHHHH
Q 031726 138 L---LTK----NPWSPKSTRL 151 (154)
Q Consensus 138 v---~~~----~dl~~~i~~~ 151 (154)
+ -|+ +.+.+.|++.
T Consensus 76 I~Ipipg~~~~~~i~~~ik~a 96 (104)
T PRK01189 76 VFIPLPGISEEESIEEMAKRI 96 (104)
T ss_pred EEEeCCCCccchhHHHHHHHH
Confidence 5 122 3566666653
No 22
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=71.94 E-value=12 Score=26.41 Aligned_cols=81 Identities=14% Similarity=0.235 Sum_probs=50.7
Q ss_pred cEEEEecChhhHHHHHHcCCC--c-cCH-HHHHHHhhchHHHHHh--hhcccEEEEchhhHhhhhhhhCCCCCCCCCCCC
Q 031726 63 MKVCMLGDAQHVEEAEKIGLD--Y-MDV-EGLKKLNKNKKLVKKL--AKKYHAFLASESVIKQIPRLLGPGLNKAGNSLP 136 (154)
Q Consensus 63 ~kI~Vf~~~~~~~~Ak~aGa~--~-vg~-~eL~k~~~~~k~~kkl--~~~~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt 136 (154)
.||+|++|.+...--+-+|+. + +.. +|+.+.. +++ ..+|-.++.|.++...+...+- .++.+...|.
T Consensus 1 mkIaVIGD~dtv~GFrLaGi~~~~~~~~~ee~~~~l------~~l~~~~d~gII~Ite~~~~~i~e~i~-~~~~~~~~P~ 73 (100)
T PRK02228 1 MEIAVIGSPEFTTGFRLAGIRKVYEVPDDEKLDEAV------EEVLEDDDVGILVMHDDDLEKLPRRLR-RTLEESVEPT 73 (100)
T ss_pred CEEEEEeCHHHHHHHHHcCCceEEeeCCHHHHHHHH------HHHhhCCCEEEEEEehhHhHhhHHHHH-HHHhcCCCCE
Confidence 479999999888888899997 3 344 4454433 223 2669999999998887763221 1233345555
Q ss_pred cc--CC---CCChHHHHHH
Q 031726 137 LL--LT---KNPWSPKSTR 150 (154)
Q Consensus 137 ~v--~~---~~dl~~~i~~ 150 (154)
++ |. ++.+.+.|++
T Consensus 74 ii~IP~~~~~~~i~~~v~r 92 (100)
T PRK02228 74 VVTLGGGGGSGGLREKIKR 92 (100)
T ss_pred EEEECCCccchHHHHHHHH
Confidence 54 22 2345666554
No 23
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=68.59 E-value=20 Score=24.91 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=33.6
Q ss_pred CCcEEEEecChh---------hHHHHHHcCCCc----cCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhh
Q 031726 61 PKMKVCMLGDAQ---------HVEEAEKIGLDY----MDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIP 121 (154)
Q Consensus 61 k~~kI~Vf~~~~---------~~~~Ak~aGa~~----vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~ 121 (154)
+..+|+++|... ..+.|++.|.++ .+..++.+. ..+||+++.+|.+--.+.
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~----------~~~~Dvill~pqi~~~~~ 65 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEK----------LDDADVVLLAPQVAYMLP 65 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhh----------cCCCCEEEECchHHHHHH
Confidence 346899999742 246677888873 344444322 267999999998775544
No 24
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=68.08 E-value=17 Score=25.91 Aligned_cols=68 Identities=18% Similarity=0.333 Sum_probs=46.3
Q ss_pred cEEEEecChhhHHHHHHcCCC---ccCHHHHHHHhhchHHHHHh-hhcccEEEEchhhHhhhhhhhCCCCCCCCCCCCcc
Q 031726 63 MKVCMLGDAQHVEEAEKIGLD---YMDVEGLKKLNKNKKLVKKL-AKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLL 138 (154)
Q Consensus 63 ~kI~Vf~~~~~~~~Ak~aGa~---~vg~~eL~k~~~~~k~~kkl-~~~~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt~v 138 (154)
.+|+|++|.+.+.=-+-+|++ +.+.++..+... ++ ..+|-.++.|.++...+...+-. + .+..+|.++
T Consensus 4 ~kIaVIGD~dtv~GFrLaGi~~~~v~~~ee~~~~i~------~l~~~d~gII~Ite~~a~~i~~~i~~-~-~~~~~P~Il 75 (104)
T PRK01395 4 YKIGVVGDKDSILPFKALGIDVFPVIDEQEAINTLR------KLAMEDYGIIYITEQIAADIPETIER-Y-DNQVLPAII 75 (104)
T ss_pred eeEEEEECHHHHHHHHHcCCeeEEecChHHHHHHHH------HHhcCCcEEEEEcHHHHHHhHHHHHH-h-cCCCCCEEE
Confidence 489999998888888889998 346666654432 23 26699999999999888743322 1 233555543
No 25
>cd00403 Ribosomal_L1 Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA. In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds its own mRNA. Like several other large ribosomal subunit proteins, L1 displays RNA chaperone activity. L1 is one of the largest ribosomal proteins. It is composed of two domains that cycle between open and closed conformations via a hinge motion. The RNA-binding site of L1 is highly conserved, with both mRNA and rRNA binding the same binding site.
Probab=60.50 E-value=6 Score=30.97 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=19.5
Q ss_pred hhHhhhhhhhCC-CCCCCCCCCCcc
Q 031726 115 SVIKQIPRLLGP-GLNKAGNSLPLL 138 (154)
Q Consensus 115 ~~m~~l~r~LGp-gL~p~~K~pt~v 138 (154)
.+...+||+||| ++||..+.+|..
T Consensus 108 ~~~~~lgk~~~~k~k~P~~~~~t~~ 132 (208)
T cd00403 108 LLPKLLGKVLGPRGKMPNPKTGTVT 132 (208)
T ss_pred HHHHHhccccccCCCCCcCCCCCCc
Confidence 345679999999 999999988543
No 26
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=54.64 E-value=39 Score=24.03 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=31.2
Q ss_pred EEEEecChh---------hHHHHHHcCCCc----cCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhh
Q 031726 64 KVCMLGDAQ---------HVEEAEKIGLDY----MDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQ 119 (154)
Q Consensus 64 kI~Vf~~~~---------~~~~Ak~aGa~~----vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~ 119 (154)
+|+++|... ..+.|++.|.++ .+..++.+...+ .+||+++.+|.+--.
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~--------~~~DvIll~PQi~~~ 63 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATEGEKAIAA--------AEYDLYLVSPQTKMY 63 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhhcc--------CCCCEEEEChHHHHH
Confidence 688888642 246677888873 566565443211 469999999886543
No 27
>PRK00536 speE spermidine synthase; Provisional
Probab=50.63 E-value=31 Score=28.62 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=43.3
Q ss_pred CCCcEEEEecChh--hHHHHHHc--CCCccCHHH-HHHHhhch--H--------------HHHHh-hhcccEEEEc----
Q 031726 60 RPKMKVCMLGDAQ--HVEEAEKI--GLDYMDVEG-LKKLNKNK--K--------------LVKKL-AKKYHAFLAS---- 113 (154)
Q Consensus 60 ~k~~kI~Vf~~~~--~~~~Ak~a--Ga~~vg~~e-L~k~~~~~--k--------------~~kkl-~~~~d~~ia~---- 113 (154)
+...+|+|++.|+ .+.|..+. -++.|..|+ +.+..+.. . ..++- ...||++|.+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs~~~ 150 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQEPD 150 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcCCCC
Confidence 3456999999765 45555544 355666665 44443330 0 11121 2579999997
Q ss_pred hhhHhhhhhhhCC-CCCCC
Q 031726 114 ESVIKQIPRLLGP-GLNKA 131 (154)
Q Consensus 114 ~~~m~~l~r~LGp-gL~p~ 131 (154)
++....+.|.|.| |+|-.
T Consensus 151 ~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 151 IHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred hHHHHHHHHhcCCCcEEEE
Confidence 3444556788888 77765
No 28
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=49.79 E-value=48 Score=22.64 Aligned_cols=51 Identities=22% Similarity=0.384 Sum_probs=37.9
Q ss_pred EEEecChhhHHHHHHcCCC--cc--CHHHHHHHhhchHHHHHhh--hcccEEEEchhhHhhhh
Q 031726 65 VCMLGDAQHVEEAEKIGLD--YM--DVEGLKKLNKNKKLVKKLA--KKYHAFLASESVIKQIP 121 (154)
Q Consensus 65 I~Vf~~~~~~~~Ak~aGa~--~v--g~~eL~k~~~~~k~~kkl~--~~~d~~ia~~~~m~~l~ 121 (154)
|+|+++.+...--+-+|++ ++ +.+|+.+..+ ++. .+|-.+|.+.+++..+.
T Consensus 1 IavIGd~~~v~gFrLaGv~~~~~~~~~ee~~~~l~------~l~~~~~~gIIii~e~~~~~~~ 57 (95)
T PF01990_consen 1 IAVIGDRDTVLGFRLAGVEGVYVNTDPEEAEEALK------ELLKDEDVGIIIITEDLAEKIR 57 (95)
T ss_dssp EEEEE-HHHHHHHHHTTSEEEEESHSHHHHHHHHH------HHHHHTTEEEEEEEHHHHTTHH
T ss_pred CEEEeCHHHHHHHHHcCCCCccCCCCHHHHHHHHH------HHhcCCCccEEEeeHHHHHHHH
Confidence 7899999888888889999 34 6666655442 333 67999999999998775
No 29
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=49.34 E-value=10 Score=30.14 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=23.3
Q ss_pred cEEEEecChhhHHHHHHcCCCccCHH
Q 031726 63 MKVCMLGDAQHVEEAEKIGLDYMDVE 88 (154)
Q Consensus 63 ~kI~Vf~~~~~~~~Ak~aGa~~vg~~ 88 (154)
.|||=+++.+.++.|.++||+++|.-
T Consensus 3 vKICGit~~eda~~~~~~GaD~iGfI 28 (207)
T PRK13958 3 LKFCGFTTIKDVTAASQLPIDAIGFI 28 (207)
T ss_pred EEEcCCCcHHHHHHHHHcCCCEEEEe
Confidence 68999999999999999999988874
No 30
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=46.95 E-value=11 Score=30.23 Aligned_cols=26 Identities=35% Similarity=0.632 Sum_probs=22.8
Q ss_pred CcEEEEecChhhHHHHHHcCCCccCH
Q 031726 62 KMKVCMLGDAQHVEEAEKIGLDYMDV 87 (154)
Q Consensus 62 ~~kI~Vf~~~~~~~~Ak~aGa~~vg~ 87 (154)
..|||=++..+.++.|.++||+++|.
T Consensus 3 ~vKICGlt~~eda~~a~~~gad~iG~ 28 (208)
T COG0135 3 KVKICGLTRLEDAKAAAKAGADYIGF 28 (208)
T ss_pred ceEECCCCCHHHHHHHHHcCCCEEEE
Confidence 46899999999999999999997764
No 31
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=42.53 E-value=63 Score=22.79 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=29.8
Q ss_pred EEEEecChh---------hHHHHHHcCCCc----cCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhh
Q 031726 64 KVCMLGDAQ---------HVEEAEKIGLDY----MDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQ 119 (154)
Q Consensus 64 kI~Vf~~~~---------~~~~Ak~aGa~~----vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~ 119 (154)
+|+++|.+- ..+.|++.|.++ .+..++.+ ...+||.++.+|.+--.
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~----------~~~~~Dvill~PQv~~~ 60 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYD----------MIPDYDLVILAPQMASY 60 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHH----------hccCCCEEEEcChHHHH
Confidence 578888532 347788889873 34444432 23779999999886543
No 32
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=42.36 E-value=14 Score=29.33 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=23.2
Q ss_pred cEEEEecChhhHHHHHHcCCCccCHH
Q 031726 63 MKVCMLGDAQHVEEAEKIGLDYMDVE 88 (154)
Q Consensus 63 ~kI~Vf~~~~~~~~Ak~aGa~~vg~~ 88 (154)
.|||=+.+.+.++.|.++||+++|.-
T Consensus 5 vKICGi~~~eda~~~~~~Gad~iGfI 30 (210)
T PRK01222 5 VKICGITTPEDAEAAAELGADAIGFV 30 (210)
T ss_pred EEECCCCcHHHHHHHHHcCCCEEEEc
Confidence 68999999999999999999988873
No 33
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=41.61 E-value=29 Score=24.93 Aligned_cols=56 Identities=27% Similarity=0.409 Sum_probs=38.7
Q ss_pred cEEEEecChhhHHHHHHcCCC--c-cCHHH--HHHHhhchHHHHHhh-hcccEEEEchhhHhhhhhhh
Q 031726 63 MKVCMLGDAQHVEEAEKIGLD--Y-MDVEG--LKKLNKNKKLVKKLA-KKYHAFLASESVIKQIPRLL 124 (154)
Q Consensus 63 ~kI~Vf~~~~~~~~Ak~aGa~--~-vg~~e--L~k~~~~~k~~kkl~-~~~d~~ia~~~~m~~l~r~L 124 (154)
.+|||++|.+...--+=+|+. + ++.++ +.+.. +.|+ .+|..++-|.+++..+...+
T Consensus 3 ~~I~VIGd~dtvtGFrLaGv~~~~v~~~~~~~~~~~~------~~l~~~~~~iIiite~~a~~i~~~i 64 (104)
T COG1436 3 MKIAVIGDRDTVTGFRLAGVRVVYVADDEEDELRAAL------RVLAEDDVGIILITEDLAEKIREEI 64 (104)
T ss_pred eEEEEEEccchhhceeeecceeEEEecChhHHHHHHH------HhhccCCceEEEEeHHHHhhhHHHH
Confidence 489999999877666667887 2 44443 33332 3343 46999999999999887433
No 34
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=39.95 E-value=19 Score=28.13 Aligned_cols=26 Identities=23% Similarity=0.539 Sum_probs=20.3
Q ss_pred cEEEEecChhhHHHHHHcCCCccCHH
Q 031726 63 MKVCMLGDAQHVEEAEKIGLDYMDVE 88 (154)
Q Consensus 63 ~kI~Vf~~~~~~~~Ak~aGa~~vg~~ 88 (154)
.|||=+++.+.+..|.++|++++|.-
T Consensus 1 vKICGi~~~~da~~~~~~g~d~~Gfi 26 (197)
T PF00697_consen 1 VKICGITRPEDARLAAELGADYLGFI 26 (197)
T ss_dssp EEEE---SHHHHHHHHHHTSSEEEEE
T ss_pred CeECCCCcHHHHHHHHHcCCCEEeee
Confidence 48999999999999999999988874
No 35
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=39.35 E-value=94 Score=21.37 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=29.5
Q ss_pred EEEEecChh---------hHHHHHHcCCCc----cCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhh
Q 031726 64 KVCMLGDAQ---------HVEEAEKIGLDY----MDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIP 121 (154)
Q Consensus 64 kI~Vf~~~~---------~~~~Ak~aGa~~----vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~ 121 (154)
+|+++|... ..+.+++.|.++ .+..++.+ ...+||.++.+|.+.-.+.
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~~~----------~~~~~Diil~~Pqv~~~~~ 61 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESELEE----------YIDDADVVLLGPQVRYMLD 61 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHHHH----------hcCCCCEEEEChhHHHHHH
Confidence 366666532 235666778762 34444321 1377999999999876554
No 36
>PLN02363 phosphoribosylanthranilate isomerase
Probab=39.15 E-value=17 Score=29.94 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=23.8
Q ss_pred CcEEEEecChhhHHHHHHcCCCccCHH
Q 031726 62 KMKVCMLGDAQHVEEAEKIGLDYMDVE 88 (154)
Q Consensus 62 ~~kI~Vf~~~~~~~~Ak~aGa~~vg~~ 88 (154)
..|||=+.+.+.+..|.++||+++|.-
T Consensus 48 ~VKICGit~~eda~~a~~~GaD~iGfI 74 (256)
T PLN02363 48 LVKMCGITSARDAAMAVEAGADFIGMI 74 (256)
T ss_pred eEEECCCCcHHHHHHHHHcCCCEEEEe
Confidence 469999999999999999999988873
No 37
>PRK03957 V-type ATP synthase subunit F; Provisional
Probab=37.76 E-value=1.3e+02 Score=21.03 Aligned_cols=53 Identities=25% Similarity=0.359 Sum_probs=38.8
Q ss_pred cEEEEecChhhHHHHHHcCCC---ccC-HHHHHHHhhchHHHHHhh--hcccEEEEchhhHhhhh
Q 031726 63 MKVCMLGDAQHVEEAEKIGLD---YMD-VEGLKKLNKNKKLVKKLA--KKYHAFLASESVIKQIP 121 (154)
Q Consensus 63 ~kI~Vf~~~~~~~~Ak~aGa~---~vg-~~eL~k~~~~~k~~kkl~--~~~d~~ia~~~~m~~l~ 121 (154)
.+|+|++|.+...=-+-+|+. .+. .+|+.+.. +++. .+|-.++.|.++...+.
T Consensus 1 mkIaVIgD~dtv~GFrLaGi~~~~~v~~~ee~~~~l------~~l~~~~d~gII~ite~~~~~i~ 59 (100)
T PRK03957 1 MKIAVVGDRDTVTGFRLAGLTEVYEVKNPEEAKNAI------KELVENDEIGIIIITERIAEEIR 59 (100)
T ss_pred CEEEEEeCHHHHHHHHHcCCCceEEeCCHHHHHHHH------HHHhhCCCeEEEEEcHHHHHHHH
Confidence 379999998888778888995 333 35554433 3344 56999999999998875
No 38
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=36.45 E-value=94 Score=26.77 Aligned_cols=75 Identities=24% Similarity=0.406 Sum_probs=39.3
Q ss_pred EEcCCCCC--CCcEEEEecChhhHHHHHHc-CCC----ccCHHH-HHHHhhch--------------HHH----HHhhhc
Q 031726 53 VKLPHIPR--PKMKVCMLGDAQHVEEAEKI-GLD----YMDVEG-LKKLNKNK--------------KLV----KKLAKK 106 (154)
Q Consensus 53 v~LP~~~~--k~~kI~Vf~~~~~~~~Ak~a-Ga~----~vg~~e-L~k~~~~~--------------k~~----kkl~~~ 106 (154)
|.|=|..| ....|.|.+|++.--.|... |-. +|..+| |++++..- .++ ..+...
T Consensus 142 v~lm~~RGDL~gK~I~vvGDDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~k 221 (354)
T COG1568 142 VALMYSRGDLEGKEIFVVGDDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRK 221 (354)
T ss_pred eeeeccccCcCCCeEEEEcCchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhh
Confidence 44444443 34468888876643333322 222 677777 66654211 011 123356
Q ss_pred ccEEEEchh-hHhhhhhhhCCC
Q 031726 107 YHAFLASES-VIKQIPRLLGPG 127 (154)
Q Consensus 107 ~d~~ia~~~-~m~~l~r~LGpg 127 (154)
||.|+.+|. -++.+--.||+|
T Consensus 222 FDvfiTDPpeTi~alk~FlgRG 243 (354)
T COG1568 222 FDVFITDPPETIKALKLFLGRG 243 (354)
T ss_pred CCeeecCchhhHHHHHHHHhcc
Confidence 999999875 344444455554
No 39
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=35.52 E-value=1.6e+02 Score=26.25 Aligned_cols=75 Identities=21% Similarity=0.235 Sum_probs=49.5
Q ss_pred eEEcCCCC---------CCCcEEEEecChh----hHHHHHHcCCCcc--CH----HHHHHHhhchHHHHHhhhcccEEEE
Q 031726 52 SVKLPHIP---------RPKMKVCMLGDAQ----HVEEAEKIGLDYM--DV----EGLKKLNKNKKLVKKLAKKYHAFLA 112 (154)
Q Consensus 52 ~v~LP~~~---------~k~~kI~Vf~~~~----~~~~Ak~aGa~~v--g~----~eL~k~~~~~k~~kkl~~~~d~~ia 112 (154)
...||... .-.+++|||+..| ...+++..|+.++ .+ .....-.+-+...+.+...+|.++|
T Consensus 104 h~YlP~D~~~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~a 183 (419)
T COG1519 104 HQYLPLDLPIAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILA 183 (419)
T ss_pred EEecCcCchHHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhcceeee
Confidence 45677665 2356899999987 4688999999943 22 2243333444566667788999999
Q ss_pred chhhHhhhhhhhCC
Q 031726 113 SESVIKQIPRLLGP 126 (154)
Q Consensus 113 ~~~~m~~l~r~LGp 126 (154)
..+.=.+=-+.||-
T Consensus 184 Qse~D~~Rf~~LGa 197 (419)
T COG1519 184 QSEEDAQRFRSLGA 197 (419)
T ss_pred cCHHHHHHHHhcCC
Confidence 88766553333443
No 40
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=34.92 E-value=62 Score=24.68 Aligned_cols=86 Identities=14% Similarity=0.212 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCC----CCceee-eEEcCCC-C-------------CC-CcEE
Q 031726 6 SDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK----DKRFSG-SVKLPHI-P-------------RP-KMKV 65 (154)
Q Consensus 6 ~~~l~~ai~~~~~~~~~~~~~~f~esvel~i~lk~~d~k~----~~~i~g-~v~LP~~-~-------------~k-~~kI 65 (154)
.+.|..|=+.+++.+.+.. .+.. .++.|.|-++.... ...+.| .|.+... - +. ...|
T Consensus 21 ~~~l~~aR~~Li~~L~~y~--~~~~-~~v~VVFDa~~~~~~~~~~~~~~gi~Vvft~~~~tAD~~Ie~~v~~~~~~~~~v 97 (166)
T PF05991_consen 21 RGDLEAARERLIEMLSEYA--QFSG-YEVIVVFDAYKVPGGSEEREEYGGIEVVFTKEGETADDYIERLVRELKNRPRQV 97 (166)
T ss_pred cCCHHHHHHHHHHHHHHHh--cccC-CEEEEEEeCCcCCCCCceeeeeCceEEEECCCCCCHHHHHHHHHHHhccCCCeE
Confidence 3455555555555443222 3433 77888885444332 111222 3444432 1 12 4689
Q ss_pred EEecCh-hhHHHHHHcCCCccCHHHHHHHh
Q 031726 66 CMLGDA-QHVEEAEKIGLDYMDVEGLKKLN 94 (154)
Q Consensus 66 ~Vf~~~-~~~~~Ak~aGa~~vg~~eL~k~~ 94 (154)
+|.+++ .....|...||..++.+++....
T Consensus 98 ~VVTSD~~iq~~~~~~GA~~iss~ef~~~l 127 (166)
T PF05991_consen 98 TVVTSDREIQRAARGRGAKRISSEEFLREL 127 (166)
T ss_pred EEEeCCHHHHHHHhhCCCEEEcHHHHHHHH
Confidence 999975 55677889999999999976443
No 41
>PF10820 DUF2543: Protein of unknown function (DUF2543); InterPro: IPR020251 This entry contains proteins with no known function.
Probab=33.27 E-value=33 Score=23.26 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=21.4
Q ss_pred hhhHHHHHHcCCCccCHHHHHHHhhch
Q 031726 71 AQHVEEAEKIGLDYMDVEGLKKLNKNK 97 (154)
Q Consensus 71 ~~~~~~Ak~aGa~~vg~~eL~k~~~~~ 97 (154)
..+.+.|.+||++-...+||..+...|
T Consensus 52 eaQ~EMA~eAgi~~~rID~IA~fLNqW 78 (81)
T PF10820_consen 52 EAQQEMASEAGIDEQRIDDIANFLNQW 78 (81)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHh
Confidence 446688999999988889988776555
No 42
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=32.59 E-value=27 Score=27.08 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=22.6
Q ss_pred cEEEEecChhhHHHHHHcCCCccCHHH
Q 031726 63 MKVCMLGDAQHVEEAEKIGLDYMDVEG 89 (154)
Q Consensus 63 ~kI~Vf~~~~~~~~Ak~aGa~~vg~~e 89 (154)
.|||=+.+.+.++.|.++|++++|.-.
T Consensus 1 vKiCGi~~~ed~~~a~~~Gvd~ig~i~ 27 (203)
T cd00405 1 VKICGITTLEDALAAAEAGADAIGFIF 27 (203)
T ss_pred CEECCCCCHHHHHHHHHcCCCEEEEec
Confidence 378888888999999999999887653
No 43
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=32.51 E-value=71 Score=27.39 Aligned_cols=45 Identities=24% Similarity=0.288 Sum_probs=29.1
Q ss_pred cEEEEecChhhHHHHHHcCCC-cc--CHHHHHHHhhchHHHHHhhhcccEEEE
Q 031726 63 MKVCMLGDAQHVEEAEKIGLD-YM--DVEGLKKLNKNKKLVKKLAKKYHAFLA 112 (154)
Q Consensus 63 ~kI~Vf~~~~~~~~Ak~aGa~-~v--g~~eL~k~~~~~k~~kkl~~~~d~~ia 112 (154)
.+|.+.|..+..+.+++.||+ ++ ..+++.+..++. .-..||++|-
T Consensus 184 ~~v~t~~s~e~~~l~k~lGAd~vvdy~~~~~~e~~kk~-----~~~~~DvVlD 231 (347)
T KOG1198|consen 184 IKVVTACSKEKLELVKKLGADEVVDYKDENVVELIKKY-----TGKGVDVVLD 231 (347)
T ss_pred cEEEEEcccchHHHHHHcCCcEeecCCCHHHHHHHHhh-----cCCCccEEEE
Confidence 577788888888888888988 33 333444443321 0256999886
No 44
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=32.33 E-value=1.2e+02 Score=21.34 Aligned_cols=46 Identities=22% Similarity=0.176 Sum_probs=32.7
Q ss_pred eeeeEEcCCCCC--CCcEEEEecChh----hHHHHHHcCCCccCHHHHHHHh
Q 031726 49 FSGSVKLPHIPR--PKMKVCMLGDAQ----HVEEAEKIGLDYMDVEGLKKLN 94 (154)
Q Consensus 49 i~g~v~LP~~~~--k~~kI~Vf~~~~----~~~~Ak~aGa~~vg~~eL~k~~ 94 (154)
.|..+.|-+..+ +-++|..-+.|+ ..+.|++.|+++.-..+|.+..
T Consensus 7 ~r~AvAl~Yd~~~~~AP~vvA~G~G~iAe~II~~Ake~~Vpi~edp~Lv~~L 58 (92)
T COG2257 7 IRKAVALAYDEGKDKAPKVVASGKGEIAEKIIEKAKEHGVPIQEDPLLVELL 58 (92)
T ss_pred cchheeeeeccCCCCCCEEEeecchHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 455666776664 445776666665 3588999999998888887654
No 45
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=30.36 E-value=1.3e+02 Score=21.20 Aligned_cols=51 Identities=12% Similarity=0.157 Sum_probs=32.8
Q ss_pred cEEEEecChh---------hHHHHHHcCCCc----cCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhh
Q 031726 63 MKVCMLGDAQ---------HVEEAEKIGLDY----MDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRL 123 (154)
Q Consensus 63 ~kI~Vf~~~~---------~~~~Ak~aGa~~----vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~r~ 123 (154)
.+|+++|..- ..+++++.|.++ ++.++... . ..+||++|..|.+--.+..+
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A~~~~~~~~---~-------~~~~DviLl~Pqi~~~~~~i 67 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGE---K-------GQNADVVLLGPQIAYMLPEI 67 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEEeecchhhc---c-------ccCCCEEEECHHHHHHHHHH
Confidence 4799999742 235667778872 33322222 1 26799999999988776643
No 46
>KOG2697 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=30.14 E-value=32 Score=29.85 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=11.9
Q ss_pred hHhhhhhhhCC--CCCCCCCC
Q 031726 116 VIKQIPRLLGP--GLNKAGNS 134 (154)
Q Consensus 116 ~m~~l~r~LGp--gL~p~~K~ 134 (154)
-.|++-+|||| .+--..||
T Consensus 206 ~~PKV~KIfGPGNQfVTAAKM 226 (446)
T KOG2697|consen 206 SCPKVEKIFGPGNQFVTAAKM 226 (446)
T ss_pred cCcchhhhcCCchhhhhhhhh
Confidence 35788888888 33334444
No 47
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=30.07 E-value=84 Score=26.48 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=19.1
Q ss_pred CCcEEEEecCh----hhHHHHHHcCCCccCHHHHHHHh
Q 031726 61 PKMKVCMLGDA----QHVEEAEKIGLDYMDVEGLKKLN 94 (154)
Q Consensus 61 k~~kI~Vf~~~----~~~~~Ak~aGa~~vg~~eL~k~~ 94 (154)
++..++|.++. .....|++.|+.+++.+++.++.
T Consensus 268 ~~t~~lv~g~~~~~ssK~~kA~~~gi~ii~e~~f~~ll 305 (313)
T PRK06063 268 RDTSLVVCNDPAPEQGKGYHARQLGVPVLDEAAFLELL 305 (313)
T ss_pred cCccEEEECCCCCcccHHHHHHHcCCccccHHHHHHHH
Confidence 45556655542 24556666666666666654443
No 48
>PTZ00469 60S ribosomal subunit protein L18; Provisional
Probab=28.39 E-value=2e+02 Score=22.93 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=41.9
Q ss_pred CCcEEEEecChhh-HHHHHHcCCCccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhCC
Q 031726 61 PKMKVCMLGDAQH-VEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGP 126 (154)
Q Consensus 61 k~~kI~Vf~~~~~-~~~Ak~aGa~~vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~r~LGp 126 (154)
++.+||.|-=.+. .+.-.+||-.++..++|.... ++ .+-..+|..|..-....+.+|+
T Consensus 95 pkvtVaAL~fS~~Ar~kI~~AGGe~lT~dqLa~~~--P~------G~nv~Ll~g~r~~R~a~khfg~ 153 (187)
T PTZ00469 95 KKLKVCALRFTETARKRILDAGGECLTFDQLALKY--PT------GQKCILLRGPTKARTAEKHFGK 153 (187)
T ss_pred CceEEEEEecCHHHHHHHHHhCCEEEeHHHHHHHC--CC------CCceEEEECCCchhHHHHhcCC
Confidence 4678999885443 455668899999999997653 32 3456677777777777788886
No 49
>TIGR02922 conserved hypothetical protein TIGR02922. Two members of this family are found in Colwellia psychrerythraea 34H and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by TIGR02595.
Probab=27.78 E-value=39 Score=22.33 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=21.3
Q ss_pred ceeeeEEcCCCCCCCcEEEEecChhh
Q 031726 48 RFSGSVKLPHIPRPKMKVCMLGDAQH 73 (154)
Q Consensus 48 ~i~g~v~LP~~~~k~~kI~Vf~~~~~ 73 (154)
.-.|.+.+|..+++...|.+.|.++.
T Consensus 30 ~~~GrvmiPqeFkrGKsIiAV~EGe~ 55 (67)
T TIGR02922 30 NESGRVMIPQEFKRGKSIIAVCEGEI 55 (67)
T ss_pred cccccEEcchHHcCCCeEEEEEecce
Confidence 34578999999988888999998863
No 50
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=26.20 E-value=78 Score=26.18 Aligned_cols=58 Identities=16% Similarity=0.262 Sum_probs=28.1
Q ss_pred CCcEEEEecChhhHHHHHHc-----CCCccCHHH-HHHHhhchHH-------------H----HHhhhcccEEEEchhhH
Q 031726 61 PKMKVCMLGDAQHVEEAEKI-----GLDYMDVEG-LKKLNKNKKL-------------V----KKLAKKYHAFLASESVI 117 (154)
Q Consensus 61 k~~kI~Vf~~~~~~~~Ak~a-----Ga~~vg~~e-L~k~~~~~k~-------------~----kkl~~~~d~~ia~~~~m 117 (154)
...+|++++|++....|... .+.++..+| |.+.+...-. + ..+...||.|++.|-.-
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT 123 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPYT 123 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---SS
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCCC
Confidence 35678888888754333332 233778877 6665542211 1 22457799999988754
Q ss_pred h
Q 031726 118 K 118 (154)
Q Consensus 118 ~ 118 (154)
+
T Consensus 124 ~ 124 (243)
T PF01861_consen 124 P 124 (243)
T ss_dssp H
T ss_pred H
Confidence 4
No 51
>PF09558 DUF2375: Protein of unknown function (DUF2375); InterPro: IPR014271 Two members of this family are found in Colwellia psychrerythraea (strain 34H / ATCC BAA-681) and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by IPR013424 from INTERPRO.
Probab=25.76 E-value=43 Score=22.42 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=20.0
Q ss_pred eeeeEEcCCCCCCCcEEEEecChh
Q 031726 49 FSGSVKLPHIPRPKMKVCMLGDAQ 72 (154)
Q Consensus 49 i~g~v~LP~~~~k~~kI~Vf~~~~ 72 (154)
-.|.|.+|-.+++...|.+.++++
T Consensus 33 ~~grv~iP~~Fr~GKsIiAVleGe 56 (71)
T PF09558_consen 33 ESGRVMIPQSFRRGKSIIAVLEGE 56 (71)
T ss_pred cCccEEChHHHcCCceEEEEEcCc
Confidence 356799999998888888888886
No 52
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=25.68 E-value=25 Score=23.22 Aligned_cols=56 Identities=11% Similarity=0.199 Sum_probs=30.5
Q ss_pred EEEEecChh----------hHHHHHHcCCCccCHHHHHHHhhchHHHHHhhhcccEEEEchhhH-hhhhhhhC
Q 031726 64 KVCMLGDAQ----------HVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVI-KQIPRLLG 125 (154)
Q Consensus 64 kI~Vf~~~~----------~~~~Ak~aGa~~vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m-~~l~r~LG 125 (154)
||++.|..- ..+.+++.|.++.......... . ....+||++|.+|++- ..+.+..+
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~~~~~--~----~~~~~~D~il~~~~i~~~~~~~~~~ 67 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGSILEV--E----EIADDADLILLTPQIAYEDLKEFAG 67 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEETTTH--H----HHHTT-SEEEEEESSGGHHHHHHTT
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEeccccc--c----cccCCCcEEEEcCccchhhhhhhcC
Confidence 577777531 2356677787633222110000 0 1236699999999988 46666555
No 53
>PF04951 Peptidase_M55: D-aminopeptidase; InterPro: IPR007035 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M55 (DppA aminopeptidase family, clan MN). The type example is Bacillus subtilis DppA, which is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a self-compartmentalising protease, a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organised in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterised by the SXDXEG key sequence []. The only known substrates are D-ala-D-ala and D-ala-gly-gly.; PDB: 1HI9_A.
Probab=24.49 E-value=1.1e+02 Score=25.48 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCceeEEEEEEec
Q 031726 6 SDALREAVSSIVQYSKETKKRNFTETIELQIGLK 39 (154)
Q Consensus 6 ~~~l~~ai~~~~~~~~~~~~~~f~esvel~i~lk 39 (154)
.+.|.+++++|++..++.+.-++...+++.|.++
T Consensus 193 ~~~i~~~a~~Al~~~~~~~p~~~~~p~~l~i~f~ 226 (265)
T PF04951_consen 193 CERIREAAKEALERLREIKPLKLPGPYTLEIEFK 226 (265)
T ss_dssp HHHHHHHHHHHHHSGGG-------SS-EEEEEES
T ss_pred HHHHHHHHHHHHHhcccCCCCCCCCCEEEEEEEC
Confidence 4578888888887776656668899999999995
No 54
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=23.81 E-value=40 Score=30.21 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=24.0
Q ss_pred CcEEEEecChhhHHHHHHcCCCccCHH
Q 031726 62 KMKVCMLGDAQHVEEAEKIGLDYMDVE 88 (154)
Q Consensus 62 ~~kI~Vf~~~~~~~~Ak~aGa~~vg~~ 88 (154)
..|||=+.+.+.+..|.++||+++|.-
T Consensus 258 ~vKICGit~~eda~~a~~~GaD~lGfI 284 (454)
T PRK09427 258 ENKVCGLTRPQDAKAAYDAGAVYGGLI 284 (454)
T ss_pred ccccCCCCCHHHHHHHHhCCCCEEeeE
Confidence 579999999999999999999988873
No 55
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=23.68 E-value=1.6e+02 Score=22.73 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=32.2
Q ss_pred eEEcCCCCC---------CCcEEEEecChh----hHHHHHHcCCCcc--CH----HHHHHHhhchHHHHHhhhcccEEEE
Q 031726 52 SVKLPHIPR---------PKMKVCMLGDAQ----HVEEAEKIGLDYM--DV----EGLKKLNKNKKLVKKLAKKYHAFLA 112 (154)
Q Consensus 52 ~v~LP~~~~---------k~~kI~Vf~~~~----~~~~Ak~aGa~~v--g~----~eL~k~~~~~k~~kkl~~~~d~~ia 112 (154)
.+.+|.... =.++++|++..| ...+|++.|+.++ ++ ........-+...+.+...||.++|
T Consensus 76 ~~~~P~D~~~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~a 155 (186)
T PF04413_consen 76 VQYLPLDFPWAVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILA 155 (186)
T ss_dssp EEE---SSHHHHHHHHHHH--SEEEEES----HHHHHH-----S-EEEEEE--------------HHHHHHGGG-SEEEE
T ss_pred EEEeCccCHHHHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEE
Confidence 455776641 145899999876 4688999999943 22 1122111112456777789999999
Q ss_pred chhhHhhhhhhhC
Q 031726 113 SESVIKQIPRLLG 125 (154)
Q Consensus 113 ~~~~m~~l~r~LG 125 (154)
..+--.+--+.||
T Consensus 156 qs~~da~r~~~lG 168 (186)
T PF04413_consen 156 QSEADAERFRKLG 168 (186)
T ss_dssp SSHHHHHHHHTTT
T ss_pred CCHHHHHHHHHcC
Confidence 7765554333344
No 56
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=22.42 E-value=1.3e+02 Score=24.80 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=35.4
Q ss_pred EEEEec-ChhhHHHHHHcCCCcc---------------CHHHHHHHhhchHHHHHhhhcccEEEEchhhHh
Q 031726 64 KVCMLG-DAQHVEEAEKIGLDYM---------------DVEGLKKLNKNKKLVKKLAKKYHAFLASESVIK 118 (154)
Q Consensus 64 kI~Vf~-~~~~~~~Ak~aGa~~v---------------g~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~ 118 (154)
-|||=+ +.+..-.|.+|||+.+ +.+|+..+- ++-|+|..+-...+.-|.++|
T Consensus 63 PICVSaVep~~f~~aV~AGAdliEIGNfDsFY~qGr~f~a~eVL~Lt---~~tR~LLP~~~LsVTVPHiL~ 130 (242)
T PF04481_consen 63 PICVSAVEPELFVAAVKAGADLIEIGNFDSFYAQGRRFSAEEVLALT---RETRSLLPDITLSVTVPHILP 130 (242)
T ss_pred CeEeecCCHHHHHHHHHhCCCEEEecchHHHHhcCCeecHHHHHHHH---HHHHHhCCCCceEEecCcccc
Confidence 499988 5677788999999954 234443443 344567777777777777776
No 57
>PF08096 Bombolitin: Bombolitin family; InterPro: IPR012534 This family consists of the bombolitin peptides that are found in the venom of the bumblebee Megabombus pennsylvanicus (American common bumblebee). Bombolitins are structurally and functionally very similar. They lyse erythrocytes and liposomes, release histamine from rat peritoneal mast cells, and stimulate phospholipase A2 from different sources [].; GO: 0009405 pathogenesis, 0043303 mast cell degranulation, 0005576 extracellular region
Probab=20.90 E-value=51 Score=15.97 Aligned_cols=12 Identities=8% Similarity=0.490 Sum_probs=8.2
Q ss_pred hhhHhhhhhhhC
Q 031726 114 ESVIKQIPRLLG 125 (154)
Q Consensus 114 ~~~m~~l~r~LG 125 (154)
.+|+.+++++|+
T Consensus 4 ~dilaklgkvla 15 (17)
T PF08096_consen 4 TDILAKLGKVLA 15 (17)
T ss_pred HHHHHHHHHHHh
Confidence 356777777775
No 58
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=20.68 E-value=1.1e+02 Score=20.23 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=19.3
Q ss_pred EEEEecChhhHHHHHHcCCCccC
Q 031726 64 KVCMLGDAQHVEEAEKIGLDYMD 86 (154)
Q Consensus 64 kI~Vf~~~~~~~~Ak~aGa~~vg 86 (154)
-.+|+.|.+.-+.|+..|+++-|
T Consensus 35 G~~iIidpe~SeIAkrlgi~~Pg 57 (64)
T COG2093 35 GLLIIIDPEKSEIAKRLGIKIPG 57 (64)
T ss_pred cEEEEEcCcHHHHHHHhCCCCCc
Confidence 57888899988999999998644
No 59
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=20.48 E-value=3e+02 Score=20.00 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=38.5
Q ss_pred CCcEEEEecChhhHHHHHHcCCCc-----------cCH----HHHHHHhhchHHHHHhh-hcccEEEEchhhHhhhhhhh
Q 031726 61 PKMKVCMLGDAQHVEEAEKIGLDY-----------MDV----EGLKKLNKNKKLVKKLA-KKYHAFLASESVIKQIPRLL 124 (154)
Q Consensus 61 k~~kI~Vf~~~~~~~~Ak~aGa~~-----------vg~----~eL~k~~~~~k~~kkl~-~~~d~~ia~~~~m~~l~r~L 124 (154)
+..+|+|++|.+..-=-+-||+.. +.. +|+.+....- ++ .+|=.++-|..+...+...+
T Consensus 4 ~~~~IaVIGD~Dtv~GF~LaGi~~~~~~~~~nf~~v~~~t~~eei~~~~~~~-----l~~~digIIlIte~~a~~i~~~I 78 (115)
T TIGR01101 4 KGKLIAVIGDEDTVVGFLLGGIGEINKNRHPNFLVVDKNTTVSEIEDCFNRF-----LKRDDIAIILINQHIAEMIRHAV 78 (115)
T ss_pred CCcEEEEEecHHHHHHHHHhCCCccccccccceeeecCCCCHHHHHHHHHHH-----hhcCCeEEEEEcHHHHHHhHHHH
Confidence 345899999988777677888885 333 4555433221 22 45777888888887776333
No 60
>COG5583 Uncharacterized small protein [Function unknown]
Probab=20.42 E-value=2e+02 Score=18.25 Aligned_cols=26 Identities=4% Similarity=0.231 Sum_probs=18.1
Q ss_pred cHHHHHHHHHHHHHhhhhhccCCCceeEEEEEE
Q 031726 5 QSDALREAVSSIVQYSKETKKRNFTETIELQIG 37 (154)
Q Consensus 5 ~~~~l~~ai~~~~~~~~~~~~~~f~esvel~i~ 37 (154)
+.+.+.+-|..+++.+ +| -||++.|+
T Consensus 6 ~~~~~~ekI~~~Le~l------ky-GsV~ItVh 31 (54)
T COG5583 6 KDPEVIEKIKKALEGL------KY-GSVTITVH 31 (54)
T ss_pred cchHHHHHHHHHHhhc------cc-ceEEEEEE
Confidence 3344556688888877 66 78888776
No 61
>PRK15452 putative protease; Provisional
Probab=20.36 E-value=2e+02 Score=25.68 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=19.6
Q ss_pred cEEEEecCh-hhHHHHHHcCCC--ccCHH
Q 031726 63 MKVCMLGDA-QHVEEAEKIGLD--YMDVE 88 (154)
Q Consensus 63 ~kI~Vf~~~-~~~~~Ak~aGa~--~vg~~ 88 (154)
+.++|-|.+ +....|.++||| |+|++
T Consensus 4 peLlapag~~e~l~aAi~~GADaVY~G~~ 32 (443)
T PRK15452 4 PELLSPAGTLKNMRYAFAYGADAVYAGQP 32 (443)
T ss_pred cEEEEECCCHHHHHHHHHCCCCEEEECCC
Confidence 467777754 678889999999 67764
Done!