Query 031726
Match_columns 154
No_of_seqs 114 out of 1023
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 06:43:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031726.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031726hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_A 60S ribosomal protein L 100.0 7.2E-48 2.5E-52 307.7 -11.8 152 1-153 1-152 (216)
2 3o58_A L10A, 60S ribosomal pro 100.0 2.1E-47 7.3E-52 305.2 -10.1 153 1-153 1-153 (217)
3 1i2a_A 50S ribosomal protein L 100.0 5.1E-43 1.7E-47 280.3 14.1 147 4-153 1-148 (219)
4 1mzp_A 50S ribosomal protein L 100.0 8.8E-43 3E-47 278.6 13.0 149 4-153 3-153 (217)
5 2zkr_5 60S ribosomal protein L 100.0 4.1E-43 1.4E-47 279.6 10.7 147 4-153 1-148 (212)
6 3j21_A 50S ribosomal protein L 100.0 4E-44 1.4E-48 286.1 2.3 147 4-153 3-151 (216)
7 3u42_A 50S ribosomal protein L 100.0 2E-39 6.8E-44 261.0 9.4 140 3-153 14-159 (229)
8 3qoy_A 50S ribosomal protein L 100.0 8.1E-39 2.8E-43 259.2 12.3 136 8-153 22-162 (242)
9 2wwq_5 50S ribosomal protein L 100.0 2E-38 6.7E-43 255.9 11.9 131 14-153 24-158 (234)
10 3bbo_D Ribosomal protein L1; l 100.0 2.3E-37 7.7E-42 260.5 5.0 142 3-153 128-272 (352)
11 2ftc_A Mitochondrial ribosomal 99.9 1.2E-27 4.1E-32 187.4 12.6 111 31-153 2-117 (189)
12 2ov7_A 50S ribosomal protein L 99.3 2.3E-12 7.7E-17 96.1 4.0 52 2-58 12-67 (137)
13 3qoy_A 50S ribosomal protein L 94.8 0.008 2.7E-07 48.2 1.2 24 117-140 128-152 (242)
14 2wwq_5 50S ribosomal protein L 94.0 0.015 5.2E-07 46.3 1.3 24 117-140 124-148 (234)
15 3bbo_D Ribosomal protein L1; l 93.1 0.045 1.5E-06 46.1 2.6 23 117-139 238-261 (352)
16 3j21_A 50S ribosomal protein L 92.0 0.072 2.5E-06 41.7 2.3 21 117-137 117-139 (216)
17 1i2a_A 50S ribosomal protein L 85.9 0.15 5.1E-06 40.0 0.0 21 116-136 114-136 (219)
18 1mzp_A 50S ribosomal protein L 85.6 0.16 5.6E-06 39.7 0.1 20 117-136 120-141 (217)
19 2zkr_5 60S ribosomal protein L 84.1 0.15 5.2E-06 39.7 -0.7 21 116-136 114-136 (212)
20 3u42_A 50S ribosomal protein L 68.3 0.39 1.3E-05 38.0 -2.5 17 122-138 122-142 (229)
21 2qai_A V-type ATP synthase sub 61.1 15 0.00051 25.5 4.9 53 63-121 1-63 (111)
22 2i4r_A V-type ATP synthase sub 59.1 20 0.00069 24.4 5.2 69 63-138 10-84 (102)
23 2ov6_A V-type ATP synthase sub 57.5 17 0.00057 24.6 4.6 53 63-121 1-59 (101)
24 2k6g_A Replication factor C su 51.3 12 0.00043 25.7 3.1 37 59-95 67-106 (109)
25 2d00_A V-type ATP synthase sub 46.8 29 0.00098 23.8 4.4 54 62-121 3-61 (109)
26 2l2q_A PTS system, cellobiose- 46.5 23 0.00078 23.8 3.9 47 62-118 4-63 (109)
27 3nbm_A PTS system, lactose-spe 46.4 12 0.00041 25.7 2.4 56 60-125 4-75 (108)
28 1nsj_A PRAI, phosphoribosyl an 46.3 5.8 0.0002 30.3 0.8 26 63-88 4-29 (205)
29 1v5x_A PRA isomerase, phosphor 46.3 6 0.0002 30.2 0.9 26 63-88 3-28 (203)
30 3aon_B V-type sodium ATPase su 45.1 31 0.001 23.9 4.4 68 63-138 3-74 (115)
31 1tvm_A PTS system, galactitol- 44.7 9.6 0.00033 26.1 1.7 47 61-117 20-80 (113)
32 3czc_A RMPB; alpha/beta sandwi 42.9 23 0.00077 23.9 3.4 48 62-119 18-80 (110)
33 2cok_A Poly [ADP-ribose] polym 41.4 20 0.0007 24.8 3.0 38 60-97 45-87 (113)
34 1l7b_A DNA ligase; BRCT, autos 40.1 18 0.00062 24.0 2.4 35 61-95 43-79 (92)
35 1e2b_A Enzyme IIB-cellobiose; 39.8 27 0.00093 23.6 3.4 48 63-120 4-64 (106)
36 2ebu_A Replication factor C su 36.1 35 0.0012 23.6 3.5 35 60-94 58-95 (112)
37 4aaj_A N-(5'-phosphoribosyl)an 34.8 12 0.00041 29.1 1.0 32 55-87 15-46 (228)
38 2i52_A Hypothetical protein; s 32.9 37 0.0013 24.1 3.2 27 5-37 42-68 (121)
39 2ogf_A Hypothetical protein MJ 29.5 53 0.0018 23.4 3.5 27 5-37 47-73 (122)
40 3iz5_A 60S ribosomal protein L 29.4 22 0.00075 27.3 1.6 19 118-136 121-140 (216)
41 1pii_A N-(5'phosphoribosyl)ant 28.0 18 0.00061 31.1 1.0 27 62-88 256-282 (452)
42 3l7p_A Putative nitrogen regul 20.8 1.2E+02 0.0042 20.6 4.1 66 5-79 11-78 (115)
No 1
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_A
Probab=100.00 E-value=7.2e-48 Score=307.70 Aligned_cols=152 Identities=74% Similarity=1.119 Sum_probs=145.3
Q ss_pred CCcccHHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCCCCceeeeEEcCCCCCCCcEEEEecChhhHHHHHHc
Q 031726 1 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKI 80 (154)
Q Consensus 1 ~~~~~~~~l~~ai~~~~~~~~~~~~~~f~esvel~i~lk~~d~k~~~~i~g~v~LP~~~~k~~kI~Vf~~~~~~~~Ak~a 80 (154)
|||+++++|.+||+.+++.+++ ++++|+|||||+|+|||+|+++++++||+|.|||++|++.+|||||+++++++|+++
T Consensus 1 ~~k~~~~~l~eav~~~~~~~~~-~~~kF~etvel~i~Lk~idp~kd~~~rg~v~LPh~~~k~~kV~Vf~~~~~~~~A~~a 79 (216)
T 3iz5_A 1 MSKLQSDAVKDAITQIVGEARE-KKRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMRVCMLGDAQHVDQAEKM 79 (216)
T ss_dssp CTGGGSCSSCEECTTTSSSSTT-HHHHCCCSSCCEEEEEEECCCCSSSTTCCEECCBCSSCCCCCCCEEEECCTHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccc-cccCCCccEEEEEEecccCcccccccceeecCCCCCCCCcEEEEEcChHhHHHHHhc
Confidence 9999999999999999876644 678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhCCCCCCCCCCCCccCCCCChHHHHHHHhc
Q 031726 81 GLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLTKNPWSPKSTRLRQ 153 (154)
Q Consensus 81 Ga~~vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt~v~~~~dl~~~i~~~k~ 153 (154)
||++||++||++.+++++.+|+|+.+||+|||+|++|++|+|+|||+|||++|||+|+++++|+.+.|+++++
T Consensus 80 Ga~~vg~~~L~~~~k~~~~~rkl~~~fD~~lA~~~i~~~l~riLG~~l~p~gk~P~p~~~t~dv~~~v~~~k~ 152 (216)
T 3iz5_A 80 GLDYMDVESLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKA 152 (216)
T ss_dssp HHTCSEEECGGGHHHHHHTCCCCSEEEECTTTHHHHHHHHHHHHTTTCSCCTTTTCBCSCHHHHHHHHHHTBC
T ss_pred cCCEeCHHHHHHHhhchHHHHHHHhhCCEEEECHHHHHHHHHHhcccccccCCcCCCcCCcccHHHHHHHHHh
Confidence 9999999999999999988899999999999999999999999999999999999999988999999999886
No 2
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A
Probab=100.00 E-value=2.1e-47 Score=305.18 Aligned_cols=153 Identities=59% Similarity=0.923 Sum_probs=143.1
Q ss_pred CCcccHHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCCCCceeeeEEcCCCCCCCcEEEEecChhhHHHHHHc
Q 031726 1 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKI 80 (154)
Q Consensus 1 ~~~~~~~~l~~ai~~~~~~~~~~~~~~f~esvel~i~lk~~d~k~~~~i~g~v~LP~~~~k~~kI~Vf~~~~~~~~Ak~a 80 (154)
||++++|+|++||++++++.+..++++|+|||||+|+|||+||++++++||+|.|||++|++.+|||||+++++++|+++
T Consensus 1 ~sk~~~~~~~~av~~~l~~~~~~~~~kf~etVel~i~Lk~idp~kd~~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~Ak~a 80 (217)
T 3o58_A 1 MSKITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSC 80 (217)
T ss_dssp ---CCSTTHHHHTTSSSSCCSSSSCCSSCCCCCCCCCSCCSCSSSSSCCSCCCSCCCCCSSCCCCCCCSSTTSSGGGTTT
T ss_pred CCccCHHHHHHHHHHHHHhcccccccCCCccEEEEEEecccCCCCCCcCCeEEECCCCCCCCcEEEEEcCcHhHHHHHHc
Confidence 89999999999999999866423788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhCCCCCCCCCCCCccCCCCChHHHHHHHhc
Q 031726 81 GLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLTKNPWSPKSTRLRQ 153 (154)
Q Consensus 81 Ga~~vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt~v~~~~dl~~~i~~~k~ 153 (154)
||++||++||++.+++++.+|+|+.+||+|||+|+||++|+|+|||+|||++|||+|++.++|+.++|+++++
T Consensus 81 Ga~~vg~~~L~~~~k~~k~~~~l~~~fD~~iA~~~im~~l~riLG~~l~p~gk~P~p~~vt~dv~~~v~~~k~ 153 (217)
T 3o58_A 81 GVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRS 153 (217)
T ss_dssp TCCCCCSTTTTTTSCSSSHHHHHHCSSSCCCCCCCCSSCCSSSSSSTTHHHHCSSCCSCTTTCSSSGGGGTTS
T ss_pred CCCEeCHHHHHHHhhchhHhhhhhhhCCEEEECHHHHHHHHHHhhhhhcccCCcCCCcCCchhHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999989999999999886
No 3
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=100.00 E-value=5.1e-43 Score=280.26 Aligned_cols=147 Identities=29% Similarity=0.447 Sum_probs=138.3
Q ss_pred ccHHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCCC-CceeeeEEcCCCCCCCcEEEEecChhhHHHHHHcCC
Q 031726 4 LQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKD-KRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGL 82 (154)
Q Consensus 4 ~~~~~l~~ai~~~~~~~~~~~~~~f~esvel~i~lk~~d~k~~-~~i~g~v~LP~~~~k~~kI~Vf~~~~~~~~Ak~aGa 82 (154)
|++|+|.+||+++++.. +.++|+|||||+|+|||+|++++ +++||+|.|||+++++.+|||||+++++++|+++||
T Consensus 1 ~~~~~l~eAv~~llk~~---~~~kf~etVel~i~LK~~dp~~d~q~vrg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa 77 (219)
T 1i2a_A 1 MDREALLQAVKEARELA---KPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGL 77 (219)
T ss_dssp CCHHHHHHHHHHHHHHS---CCCSSCCEEEEEEEESSCCTTSGGGCCEEEEECTTCCSSCCCEEEECCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhc---ccCCCCceEEEEEEecccCCcccccccceEEecCCCCCCCcEEEEEcCchhHHHHHHCCC
Confidence 45899999999877654 88999999999999999999987 799999999999999999999999999999999999
Q ss_pred CccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhCCCCCCCCCCCCccCCCCChHHHHHHHhc
Q 031726 83 DYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLTKNPWSPKSTRLRQ 153 (154)
Q Consensus 83 ~~vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt~v~~~~dl~~~i~~~k~ 153 (154)
++||.+||.++.++++.+|+|+.+||+|||||+||++|+|+||++|+|+|+||+|+++++|+.++|+++++
T Consensus 78 ~~vg~~~L~ki~~~kk~~r~l~~~fD~~lA~~~~m~~l~k~LGk~LgprgkmP~pk~gt~dv~~~v~~~k~ 148 (219)
T 1i2a_A 78 TVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPANANIKPLVERLKK 148 (219)
T ss_dssp EEECHHHHHHHHHCHHHHHHHHHHCSEEEEEGGGHHHHHHHTHHHHGGGTCCCEEECTTCCCHHHHHHHHT
T ss_pred CEEcHHHHHHHHhhhhhhhhchhhCCEEEECHHHHHHHHHHHhhhhcccCCCCcccCCCccHHHHHHHHhc
Confidence 99999999778778889999999999999999999999999999999999999999999999999999875
No 4
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Probab=100.00 E-value=8.8e-43 Score=278.56 Aligned_cols=149 Identities=28% Similarity=0.386 Sum_probs=140.7
Q ss_pred ccHHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCCC-CceeeeEEcCCCCCCCcEEEEecChhhHHHHHHcCC
Q 031726 4 LQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKD-KRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGL 82 (154)
Q Consensus 4 ~~~~~l~~ai~~~~~~~~~~~~~~f~esvel~i~lk~~d~k~~-~~i~g~v~LP~~~~k~~kI~Vf~~~~~~~~Ak~aGa 82 (154)
+++|++.+||++++++++ .++++|+||||++|+|||+|++++ +++||+|.|||++++..+|||||+++++++|+++||
T Consensus 3 v~~~~l~~Av~~ll~~~~-~~~~kf~etvel~i~LK~~dp~~d~q~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa 81 (217)
T 1mzp_A 3 ADKESLIEALKLALSTEY-NVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRVLVVPSSEQLEYAKKASP 81 (217)
T ss_dssp CCHHHHHHHHHHHHSTTT-CCCCSSCCEEEEEEEESSCCGGGTTTCCEEEEECSSCCSSCCCEEEECCHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHhhcc-ccccCCCccEEEEEEecCCCCcccccccceeecCCCCCCCCcEEEEEcCchhHHHHHhcCC
Confidence 689999999999888743 378999999999999999999988 799999999999999999999999999999999999
Q ss_pred C-ccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhCCCCCCCCCCCCccCCCCChHHHHHHHhc
Q 031726 83 D-YMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLTKNPWSPKSTRLRQ 153 (154)
Q Consensus 83 ~-~vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt~v~~~~dl~~~i~~~k~ 153 (154)
+ +||.+||.++.++++.+|+++.+||+|||+|+||++|+|+||+.|+|+|+||+|+++++|+.++|+++++
T Consensus 82 d~~vg~~~L~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LG~~LgprgkmP~p~~gt~dv~~~v~~~k~ 153 (217)
T 1mzp_A 82 KVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTPLPNTADISEYINRFKR 153 (217)
T ss_dssp SEECCHHHHHHHTTCHHHHHHHHHSCSEEEECGGGHHHHHHHTHHHHGGGTCCEEECCSSSCCHHHHHHHHT
T ss_pred CeeeCHHHHHHHHhhHHhhhhchhhCCEEEECHHHHHHHHHHHhhhccccCCCCcccCCCccHHHHHHHHhc
Confidence 8 9999999778778999999999999999999999999999999999999999999999999999999985
No 5
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=4.1e-43 Score=279.61 Aligned_cols=147 Identities=24% Similarity=0.389 Sum_probs=137.5
Q ss_pred ccHHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCC-CCceeeeEEcCCCCCCCcEEEEecChhhHHHHHHcCC
Q 031726 4 LQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGL 82 (154)
Q Consensus 4 ~~~~~l~~ai~~~~~~~~~~~~~~f~esvel~i~lk~~d~k~-~~~i~g~v~LP~~~~k~~kI~Vf~~~~~~~~Ak~aGa 82 (154)
|++|+|.+||+++++.. +.++|+||||++|+|||+|+++ ++++||+|.|||++++..+|||||+++++++|+++||
T Consensus 1 ~~~~~l~eAv~~llk~~---~~~kf~etvel~i~Lk~~dp~k~d~~~rg~v~LPh~~~k~~~V~Vf~~~~~~~~A~~aGa 77 (212)
T 2zkr_5 1 MADQEIENAVSRALEDA---PERNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGTGQETTIVVFAEGETALRAEEVAD 77 (212)
T ss_dssp -CCTTHHHHHHHHHHTS---CCCSSCCEEEEEEEESSCCTTTTTTCCCCEEECSSCCSSCCCEEEECCHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHhc---ccCCCCceEEEEEEeCCCCCCcccccCceEEECCCCCCCCcEEEEEcCchhHHHHHhcCC
Confidence 67889999999876654 8899999999999999999994 9999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhCCCCCCCCCCCCccCCCCChHHHHHHHhc
Q 031726 83 DYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLTKNPWSPKSTRLRQ 153 (154)
Q Consensus 83 ~~vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt~v~~~~dl~~~i~~~k~ 153 (154)
++||.+||.++.++++.+|+++.+||+|||+|+||++|+|+||+.|+|+|+||+|+++++|+.++|+++++
T Consensus 78 ~~vg~~~L~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LGk~LgprgkmP~pk~gt~dv~~~i~~~k~ 148 (212)
T 2zkr_5 78 DVLDEDELEELGGDDDAAKDLADDTDFFIAEKGLMQDIGRYLGTVLGPRGKMPEPLDPDDDVVEVIERMKN 148 (212)
T ss_dssp CCCCHHHHHHHTTCHHHHHHHHHHCSEEEECTTTHHHHHHHTHHHHHHHTCCEEECCSSSCCHHHHHHHHT
T ss_pred CEeCHHHHHHHHhhHHhhhcccccCCEEEECHHHHHHHHHHHhhhccccCCcCcccCCCcCHHHHHHHHHc
Confidence 99999999777778999999999999999999999999999999999999999999999999999999885
No 6
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=4e-44 Score=286.14 Aligned_cols=147 Identities=28% Similarity=0.475 Sum_probs=137.0
Q ss_pred ccHHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCC-CCceeeeEEcCCCCCCCcEEEEecChhhHHHHHHcCC
Q 031726 4 LQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGL 82 (154)
Q Consensus 4 ~~~~~l~~ai~~~~~~~~~~~~~~f~esvel~i~lk~~d~k~-~~~i~g~v~LP~~~~k~~kI~Vf~~~~~~~~Ak~aGa 82 (154)
+++|++.|||+.+++.. ++++|+||||++|+|+||||++ +++|||+|.|||++|++.+|||||+++++++|+++||
T Consensus 3 ~~~~~~~eav~~~~~~~---~~~kF~etvel~i~L~~~dp~k~d~~~rg~v~LPh~~~k~~kV~Vf~~~~~~~~Ak~aGa 79 (216)
T 3j21_A 3 FDRQKIVKAVKEAKARA---KPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARKLGL 79 (216)
T ss_dssp SSCSSCCCCTTTTCCCC---CCSSSCCEEEEEEEESSCCSSSGGGSCCEEEECSSCCSSCCCEEECCCSHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhC---cccCCCceEEEEEEECCCCCCCcCceeeEEEeCCCCCCCCcEEEEECCHHHHHHHHhcCC
Confidence 56777888888876533 4689999999999998899997 9999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhCCCCCCCCCCCCccCCC-CChHHHHHHHhc
Q 031726 83 DYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLTK-NPWSPKSTRLRQ 153 (154)
Q Consensus 83 ~~vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt~v~~~-~dl~~~i~~~k~ 153 (154)
+++|.+||.++.++++.+|+++.+||+|||+|+||++|+|+||+.|+|+++||+|++++ +|+.++|+++++
T Consensus 80 d~vg~e~L~k~~k~~k~~kkl~~~fD~~lA~~~im~~l~k~LGk~LgprgkmP~pk~gtv~dv~~~v~~~k~ 151 (216)
T 3j21_A 80 DVISSAELEEIASSPRQARKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTLTDLTPIVEKLKK 151 (216)
T ss_dssp CCCCTTHHHHHHHCCCSSSCCSSSCSEEEBCGGGHHHHHHHHHHHHTTSSSSCCTTTTCBCSHHHHHHHHTC
T ss_pred CccCHHHHHHHhcCHHHHhhhhhhCCEEEeCHHHHHHHHHHHHHHhccCCccCCCcCCcHHHHHHHHHHHHh
Confidence 99999999999999988899999999999999999999999999999999999999998 999999999985
No 7
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=100.00 E-value=2e-39 Score=260.97 Aligned_cols=140 Identities=24% Similarity=0.405 Sum_probs=119.3
Q ss_pred cccHHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCC-CCceeeeEEcCCCCCCCcEEEEecChhhHHHHHHcC
Q 031726 3 KLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIG 81 (154)
Q Consensus 3 ~~~~~~l~~ai~~~~~~~~~~~~~~f~esvel~i~lk~~d~k~-~~~i~g~v~LP~~~~k~~kI~Vf~~~~~~~~Ak~aG 81 (154)
+++++.++. +++|++.+++.+.++|+||||++|+| |+|+++ +++|||+|.|||++|++.+|||||+++++++|++||
T Consensus 14 ~~d~~k~y~-~~eAi~~lk~~~~~kF~etvel~i~L-~vd~~k~dq~vrg~v~LP~g~gk~~kV~Vfa~~~~~~eAk~aG 91 (229)
T 3u42_A 14 KVDPNKIYT-IDEAAHLVKELATAKFDETVEVHAKL-GIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAG 91 (229)
T ss_dssp SSCTTCCBC-HHHHHHHHHHHCCSSSCCEEEEEEEE-SSCTTCGGGCCEEEEECSSSCSTTSCEEEECCTHHHHHHHHTT
T ss_pred ccCccCCCC-HHHHHHHHHHhCCCCCCccEEEEEEE-ccCCCCCCCceeEEEECCCCCCCceEEEEecChHhHHHHHhcC
Confidence 456666553 66667777777899999999999999 899995 899999999999999999999999999999999999
Q ss_pred CCccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhh----hhhCC-CCCCCCCCCCccCCCCChHHHHHHHhc
Q 031726 82 LDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIP----RLLGP-GLNKAGNSLPLLLTKNPWSPKSTRLRQ 153 (154)
Q Consensus 82 a~~vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~----r~LGp-gL~p~~K~pt~v~~~~dl~~~i~~~k~ 153 (154)
|++||++||++.++++. .+||+|||||+||++|+ |+||| ||||++|.||+ ++|+.++|+++|+
T Consensus 92 Ad~vG~~dLi~kIk~g~------~~fD~~iAtpd~m~~vg~~LG~iLGPrGlMPnpk~GTv---t~dv~~~v~~~K~ 159 (229)
T 3u42_A 92 ADYVGGEEIIQKILDGW------MDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTV---GFNIGEIIREIKA 159 (229)
T ss_dssp CSEEECTHHHHHHHTTC------CCCSEEEECGGGHHHHHHHHHHHHHHHTCCCCGGGTCB---SSCHHHHHHHHHT
T ss_pred CceeCcHHHHHHHhcCC------ccccEEEEchHHHHHHHHhhccccccccccccCCCCCC---CCCHHHHHHHHhC
Confidence 99999999876555443 89999999999999875 56666 66666666665 6899999999974
No 8
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Probab=100.00 E-value=8.1e-39 Score=259.16 Aligned_cols=136 Identities=25% Similarity=0.360 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCC-CCceeeeEEcCCCCCCCcEEEEecChhhHHHHHHcCCCccC
Q 031726 8 ALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMD 86 (154)
Q Consensus 8 ~l~~ai~~~~~~~~~~~~~~f~esvel~i~lk~~d~k~-~~~i~g~v~LP~~~~k~~kI~Vf~~~~~~~~Ak~aGa~~vg 86 (154)
.+.|||+.+++.... ++|+|+||||++|+| |+|+++ +++|||+|.|||++|++.+|||||+++++++|+++||++||
T Consensus 22 ~l~eAi~~~k~~~~~-~~rkF~etVel~i~L-~vDp~k~d~~vrg~V~LPh~~gk~~kV~Vfa~~~~~~eAk~aGad~vg 99 (242)
T 3qoy_A 22 TLEEAVDLLKKMEEV-LQRRFDETVELAMRL-NVDPRYADQMVRGSVVLPHGLGKPIKVVVFAEGEYAKKAEEAGADYVG 99 (242)
T ss_dssp CHHHHHHHHHHHHHH-HCCSSCCEEEEEEEE-SCCTTSGGGCCEEEEECSCCCSSCCCEEEECCHHHHHHHHHTTCSEEE
T ss_pred CHHHHHHHHHhhccc-ccCCCCCcEEEEEEe-ccCCCCCCCccceEecCCCCCCCCcEEEEEcCHHHHHHHHHcCCCEEC
Confidence 567888888776544 568999999999999 899996 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHh--hchHHHHHhhhcccEEEEchhhHhhhhhhhCCCCCCCCCCCCccCC--CCChHHHHHHHhc
Q 031726 87 VEGLKKLN--KNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLT--KNPWSPKSTRLRQ 153 (154)
Q Consensus 87 ~~eL~k~~--~~~k~~kkl~~~~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt~v~~--~~dl~~~i~~~k~ 153 (154)
++||++.+ ++| .+||+|||||+|||+|+| ||+.|+|+|+||+|+++ ++|+.++|+++++
T Consensus 100 ~~dLi~ki~k~g~-------~~fD~~iAtpd~m~~l~~-LGriLGPrGlmP~pk~gTvt~dv~~~V~~~k~ 162 (242)
T 3qoy_A 100 GDELINKILKEEW-------TDFDVAIATPEMMPKVAK-LGRILGPRGLMPSPKTGTVTTNVEQAIKDAKR 162 (242)
T ss_dssp SHHHHHHHHHHTC-------CCCSEEEECTTTHHHHGG-GHHHHGGGTCSCCGGGTCBCSCHHHHHHHHHT
T ss_pred cHHHHHHHHhCCC-------ccCCEEEECHHHHHHHHH-HhHHhccccCCCcccCCccchhHHHHHHHHhc
Confidence 99987543 444 899999999999999987 77777777777777776 4899999999985
No 9
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=100.00 E-value=2e-38 Score=255.90 Aligned_cols=131 Identities=19% Similarity=0.347 Sum_probs=117.2
Q ss_pred HHHHHhhhhhccCCCceeEEEEEEecccCCCC-CCceeeeEEcCCCCCCCcEEEEecChhhHHHHHHcCCCccCHHHHH-
Q 031726 14 SSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLK- 91 (154)
Q Consensus 14 ~~~~~~~~~~~~~~f~esvel~i~lk~~d~k~-~~~i~g~v~LP~~~~k~~kI~Vf~~~~~~~~Ak~aGa~~vg~~eL~- 91 (154)
.+|++.+++.+.++|+||||++|+| |+|+++ ++++||+|.|||++|++.+|||||+++++++|+++||++||++||+
T Consensus 24 ~eAv~~lk~~~~~kF~etvel~i~L-~vdp~k~dq~vrg~V~LPh~~~k~~rV~Vfa~~~~~~~Ak~aGad~vg~edLi~ 102 (234)
T 2wwq_5 24 NEAIALLKELATAKFVESVDVAVNL-GIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLAD 102 (234)
T ss_dssp HHHHHHHHHTCCCSSCCEEEEEEEE-CSCCCSSTTSCCEEEECSSCCSSCCCEEEECSSSCHHHHHHHTCSEECSHHHHH
T ss_pred HHHHHHHHHhccCCCCceEEEEEEE-CCCCcccCcccceEEeCCCCCCCCcEEEEEcCchhHHHHHHcCCCEEcHHHHHH
Confidence 3344444455889999999999999 999994 9999999999999999999999999999999999999999999985
Q ss_pred HHhhchHHHHHhhhcccEEEEchhhHhhhhhhhCCCCCCCCCCCCccCC--CCChHHHHHHHhc
Q 031726 92 KLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLT--KNPWSPKSTRLRQ 153 (154)
Q Consensus 92 k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt~v~~--~~dl~~~i~~~k~ 153 (154)
++.++| .+||+|||||+||++|+| ||+.|+|+|+||+|+++ ++|+.++|+++++
T Consensus 103 kik~~~-------~~fD~~iAtp~~m~~l~~-LGkiLgprGlmP~pk~gTvt~dv~~~V~~~k~ 158 (234)
T 2wwq_5 103 QIKKGE-------MNFDVVIASPDAMRVVGQ-LGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKA 158 (234)
T ss_dssp HHHHTC-------CCSSEEEECHHHHHHTTS-SCSCCCSSCCSCCTTTTCBCSCSHHHHHHHHH
T ss_pred HHHcCc-------ccCCEEEECHHHHHHHHH-HhhhhccCCCCCCccCCCccccHHHHHHHHHc
Confidence 565554 899999999999999999 99999999999999988 5899999999974
No 10
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2.3e-37 Score=260.52 Aligned_cols=142 Identities=19% Similarity=0.284 Sum_probs=124.7
Q ss_pred cccHHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCC-CCCceeeeEEcCCCCCCCcEEEEecChhhHHHHHHcC
Q 031726 3 KLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQ-KDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIG 81 (154)
Q Consensus 3 ~~~~~~l~~ai~~~~~~~~~~~~~~f~esvel~i~lk~~d~k-~~~~i~g~v~LP~~~~k~~kI~Vf~~~~~~~~Ak~aG 81 (154)
+++...++. +.+|++.+++.+.++|+||||++|+| |+|++ +++++||+|.|||++|+..+|||||+++++++|+++|
T Consensus 128 ~~d~~~~Y~-l~EAi~llK~~~~~KFdETVEl~I~L-~vDpkk~dq~vRGtV~LPhgtgk~~kVcVfa~ge~~eeAk~AG 205 (352)
T 3bbo_D 128 LREIKQEYD-LKTALSLMKQMSSTKFVETAEAHFRL-NIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAG 205 (352)
T ss_dssp SCCSSSCCC-TTTTHHHHSTTCCSSSCCEECCEEEE-CSCTTSSTTCCEEEECCTTTSSSSSCEEEECCTTTTHHHHTTT
T ss_pred cccccCCCC-HHHHHHHHHhccccCCCceEEEEEEe-CCCCcccccccceeecCCCCCCCccEEEEEeCchhHHHHHHcC
Confidence 344444443 56666667777899999999999999 99999 4999999999999999999999999999999999999
Q ss_pred CCccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhhhhhhCCCCCCCCCCCCccCC--CCChHHHHHHHhc
Q 031726 82 LDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLLLT--KNPWSPKSTRLRQ 153 (154)
Q Consensus 82 a~~vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt~v~~--~~dl~~~i~~~k~ 153 (154)
|++||++||++.++ ++..+||+|||+|+||++|+| ||+.|+|+|+||+|+++ ++|+.++|+++++
T Consensus 206 AdvVG~edLikkIK------kg~~dFD~fIAtpdmM~~lgr-LGkiLGPRGlMPnPk~GTVt~Dva~aV~e~K~ 272 (352)
T 3bbo_D 206 ADIVGGEELIEQIK------GGFMDFDKLIATSDMMAKVAS-LGRILGPRGLMPTPKAGTVTPNVAQAVEEFKK 272 (352)
T ss_dssp CSEEECTTTHHHHT------TTCCCCSEEEECSSSHHHHGG-GGGTTTTTTCSCCTTTTCBSSCHHHHHTTTTT
T ss_pred CCccCHHHHHHHHH------hchhhcCEEEECHHHHHHHHh-hcccccccCCCCCCcCCcccccHHHHHHHHHc
Confidence 99999999886643 456999999999999999998 99999999999999888 5899999999875
No 11
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=99.95 E-value=1.2e-27 Score=187.39 Aligned_cols=111 Identities=18% Similarity=0.243 Sum_probs=92.3
Q ss_pred eEEEEEEecccCCCCCCceeeeEEcCCCCCCCc-EEEEecCh-hhHHHHHHcCCCccCHHHHH-HHhhchHHHHHhhhcc
Q 031726 31 TIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM-KVCMLGDA-QHVEEAEKIGLDYMDVEGLK-KLNKNKKLVKKLAKKY 107 (154)
Q Consensus 31 svel~i~lk~~d~k~~~~i~g~v~LP~~~~k~~-kI~Vf~~~-~~~~~Ak~aGa~~vg~~eL~-k~~~~~k~~kkl~~~~ 107 (154)
.|+|++.+++ .++..++||+|.|||+++++. +|||||++ +++++|+++||+++|++||+ ++.++| .+|
T Consensus 2 ~ieL~m~l~~--~r~~~~~rg~V~LPhg~~k~~~~V~Vfa~~~~~~~~Ak~aGad~vg~~dLi~ki~~~~-------~~f 72 (189)
T 2ftc_A 2 DLTLDMALGK--KKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTSLIQKIWDDE-------IVA 72 (189)
T ss_pred eEEEEEEecC--CccCcccceEEECCCCCCCCCCEEEEEeCChhHHHHHHHcCCCCcCHHHHHHHHHcCC-------ccC
Confidence 4899999975 467788899999999987776 99999998 68999999999999999985 666566 899
Q ss_pred cEEEEchhhHhhhhhhhCCCCCCCCCCCCccCC--CCChHHHHHHHhc
Q 031726 108 HAFLASESVIKQIPRLLGPGLNKAGNSLPLLLT--KNPWSPKSTRLRQ 153 (154)
Q Consensus 108 d~~ia~~~~m~~l~r~LGpgL~p~~K~pt~v~~--~~dl~~~i~~~k~ 153 (154)
|+|||||+||++|+|++|+ |+| |||+|+++ ++|+.++|+++++
T Consensus 73 D~~iAtp~~m~~l~~l~~~-Lg~--KmP~pk~gTvt~dv~~~v~~~k~ 117 (189)
T 2ftc_A 73 DFYVAVPEIMPELNRLRKK-LNK--KYPKLSRNSIGRDIPKMLELFKN 117 (189)
T ss_pred CEEEECHHHHHHHHHhhcc-ccC--CCCcccCCCccccHHHHHHHHhc
Confidence 9999999999999876443 433 36666555 6899999999985
No 12
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A
Probab=99.27 E-value=2.3e-12 Score=96.06 Aligned_cols=52 Identities=35% Similarity=0.602 Sum_probs=43.7
Q ss_pred CcccHHHHH---HHHHHHHHhhhhhccCCCceeEEEEEEecccCCCC-CCceeeeEEcCCC
Q 031726 2 SKLQSDALR---EAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHI 58 (154)
Q Consensus 2 ~~~~~~~l~---~ai~~~~~~~~~~~~~~f~esvel~i~lk~~d~k~-~~~i~g~v~LP~~ 58 (154)
++++++.++ |||+.+ ++.+.++|+||||++|+| |+||++ +++|||+|.|||+
T Consensus 12 ~kv~~~~~y~~~eAi~~~----k~~~~~kF~EtVel~i~L-~vDprk~dq~vrgtV~LP~g 67 (137)
T 2ov7_A 12 EKVDPNKIYTIDEAAHLV----KELATAKFDETVEVHAKL-GIDPRRSDQNVRGTVSLPHG 67 (137)
T ss_dssp TTSCTTCCBCHHHHHHHH----HHTCCSSSCCEEEEEEEE-SSCTTCSSCCCEEEEECTTS
T ss_pred HhcCcccccCHHHHHHHH----HhcccCCCCccEEEEEEe-CCCCccccceeeEEEEcCCC
Confidence 567777665 666654 455889999999999999 999995 9999999999997
No 13
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Probab=94.81 E-value=0.008 Score=48.18 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=20.7
Q ss_pred HhhhhhhhCC-CCCCCCCCCCccCC
Q 031726 117 IKQIPRLLGP-GLNKAGNSLPLLLT 140 (154)
Q Consensus 117 m~~l~r~LGp-gL~p~~K~pt~v~~ 140 (154)
++.|||+||| ||||+++.||+...
T Consensus 128 l~~LGriLGPrGlmP~pk~gTvt~d 152 (242)
T 3qoy_A 128 VAKLGRILGPRGLMPSPKTGTVTTN 152 (242)
T ss_dssp HGGGHHHHGGGTCSCCGGGTCBCSC
T ss_pred HHHHhHHhccccCCCcccCCccchh
Confidence 5669999999 99999999997544
No 14
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=94.04 E-value=0.015 Score=46.25 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.6
Q ss_pred HhhhhhhhCC-CCCCCCCCCCccCC
Q 031726 117 IKQIPRLLGP-GLNKAGNSLPLLLT 140 (154)
Q Consensus 117 m~~l~r~LGp-gL~p~~K~pt~v~~ 140 (154)
++.|||+||| ||||+++.||+...
T Consensus 124 l~~LGkiLgprGlmP~pk~gTvt~d 148 (234)
T 2wwq_5 124 VGQLGQVLGPRGLMPNPKVGTVTPN 148 (234)
T ss_dssp TTSSCSCCCSSCCSCCTTTTCBCSC
T ss_pred HHHHhhhhccCCCCCCccCCCcccc
Confidence 5569999999 99999999986544
No 15
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=93.10 E-value=0.045 Score=46.09 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.0
Q ss_pred HhhhhhhhCC-CCCCCCCCCCccC
Q 031726 117 IKQIPRLLGP-GLNKAGNSLPLLL 139 (154)
Q Consensus 117 m~~l~r~LGp-gL~p~~K~pt~v~ 139 (154)
++.|||+||| ||||+++.||+..
T Consensus 238 lgrLGkiLGPRGlMPnPk~GTVt~ 261 (352)
T 3bbo_D 238 VASLGRILGPRGLMPTPKAGTVTP 261 (352)
T ss_dssp HGGGGGTTTTTTCSCCTTTTCBSS
T ss_pred HHhhcccccccCCCCCCcCCcccc
Confidence 5679999999 9999999998643
No 16
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=92.01 E-value=0.072 Score=41.74 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=18.8
Q ss_pred Hhh-hhhhhCC-CCCCCCCCCCc
Q 031726 117 IKQ-IPRLLGP-GLNKAGNSLPL 137 (154)
Q Consensus 117 m~~-l~r~LGp-gL~p~~K~pt~ 137 (154)
+|. |||+||| |+||+++.+|+
T Consensus 117 l~k~LGk~LgprgkmP~pk~gtv 139 (216)
T 3j21_A 117 IGRYLGRYLGPRNKMPVVVPPTL 139 (216)
T ss_dssp HHHHHHHHHTTSSSSCCTTTTCB
T ss_pred HHHHHHHHhccCCccCCCcCCcH
Confidence 565 8999999 99999999995
No 17
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=85.86 E-value=0.15 Score=39.96 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=17.9
Q ss_pred hHhh-hhhhhCC-CCCCCCCCCC
Q 031726 116 VIKQ-IPRLLGP-GLNKAGNSLP 136 (154)
Q Consensus 116 ~m~~-l~r~LGp-gL~p~~K~pt 136 (154)
.++. |||+||| |+||+++.++
T Consensus 114 ~l~k~LGk~LgprgkmP~pk~gt 136 (219)
T 1i2a_A 114 LIGRYMGVILGPRGKMPKPVPAN 136 (219)
T ss_dssp HHHHHTHHHHGGGTCCCEEECTT
T ss_pred HHHHHHhhhhcccCCCCcccCCC
Confidence 3666 9999999 9999998884
No 18
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Probab=85.64 E-value=0.16 Score=39.70 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=17.6
Q ss_pred Hhh-hhhhhCC-CCCCCCCCCC
Q 031726 117 IKQ-IPRLLGP-GLNKAGNSLP 136 (154)
Q Consensus 117 m~~-l~r~LGp-gL~p~~K~pt 136 (154)
++. |||+||| |+||+++.++
T Consensus 120 l~~~LG~~LgprgkmP~p~~gt 141 (217)
T 1mzp_A 120 AGRILGPALGPRGKFPTPLPNT 141 (217)
T ss_dssp HHHHTHHHHGGGTCCEEECCSS
T ss_pred HHHHHhhhccccCCCCcccCCC
Confidence 666 9999999 9999999884
No 19
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=84.14 E-value=0.15 Score=39.72 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=18.3
Q ss_pred hHhh-hhhhhCC-CCCCCCCCCC
Q 031726 116 VIKQ-IPRLLGP-GLNKAGNSLP 136 (154)
Q Consensus 116 ~m~~-l~r~LGp-gL~p~~K~pt 136 (154)
.++. |||+||| |+||+++.++
T Consensus 114 ~l~~~LGk~LgprgkmP~pk~gt 136 (212)
T 2zkr_5 114 DIGRYLGTVLGPRGKMPEPLDPD 136 (212)
T ss_dssp HHHHHTHHHHHHHTCCEEECCSS
T ss_pred HHHHHHhhhccccCCcCcccCCC
Confidence 4676 9999999 9999999884
No 20
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=68.31 E-value=0.39 Score=37.96 Aligned_cols=17 Identities=18% Similarity=-0.039 Sum_probs=13.8
Q ss_pred hhhC----CCCCCCCCCCCcc
Q 031726 122 RLLG----PGLNKAGNSLPLL 138 (154)
Q Consensus 122 r~LG----pgL~p~~K~pt~v 138 (154)
+.+| +.|+|+|+||+|.
T Consensus 122 ~~vg~~LG~iLGPrGlMPnpk 142 (229)
T 3u42_A 122 GAVGSKLGRILGPRGLLPNPK 142 (229)
T ss_dssp HHHHHHHHHHHHHHTCCCCGG
T ss_pred HHHHHhhccccccccccccCC
Confidence 5565 4799999999986
No 21
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=61.06 E-value=15 Score=25.52 Aligned_cols=53 Identities=23% Similarity=0.378 Sum_probs=39.7
Q ss_pred cEEEEecChhhHHHHHHcCCC--cc--CH----HHHHHHhhchHHHHHhh--hcccEEEEchhhHhhhh
Q 031726 63 MKVCMLGDAQHVEEAEKIGLD--YM--DV----EGLKKLNKNKKLVKKLA--KKYHAFLASESVIKQIP 121 (154)
Q Consensus 63 ~kI~Vf~~~~~~~~Ak~aGa~--~v--g~----~eL~k~~~~~k~~kkl~--~~~d~~ia~~~~m~~l~ 121 (154)
.||+|++|.+...=-+-+|+. ++ +. +|+.+.. +++. .+|-.++-|.++...+.
T Consensus 1 MKIaVIGD~Dtv~GFrLaGi~~~~v~~~~~t~~ee~~~~~------~~l~~~~digIIlIte~ia~~i~ 63 (111)
T 2qai_A 1 MKIVVMGDSDTVVGFRLAGVHEAYEYDESLESVERARNKL------RELLERDDVGIILITERLAQRIG 63 (111)
T ss_dssp CEEEEEECHHHHHHHHHHTCSEEEECCSSHHHHHHHHHHH------HHHHTCTTEEEEEEEHHHHHHHC
T ss_pred CEEEEEECHHHHHHHHHcCCceEEEecCCCCCHHHHHHHH------HHHhhCCCeEEEEEcHHHHhhcc
Confidence 489999998888778888998 33 55 5654433 3344 46899999999998888
No 22
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=59.10 E-value=20 Score=24.40 Aligned_cols=69 Identities=13% Similarity=0.249 Sum_probs=45.9
Q ss_pred cEEEEecChhhHHHHHHcCCC--c-c-CHHHHHHHhhchHHHHHhh--hcccEEEEchhhHhhhhhhhCCCCCCCCCCCC
Q 031726 63 MKVCMLGDAQHVEEAEKIGLD--Y-M-DVEGLKKLNKNKKLVKKLA--KKYHAFLASESVIKQIPRLLGPGLNKAGNSLP 136 (154)
Q Consensus 63 ~kI~Vf~~~~~~~~Ak~aGa~--~-v-g~~eL~k~~~~~k~~kkl~--~~~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt 136 (154)
--++|++|.+...=-+-+|+. + + +.+|+.+.+ +++. .+|-.++-|.++...+...+-... -+..+|+
T Consensus 10 ~~~aVIGD~Dtv~GFrLaGi~~~~~~~~~ee~~~~~------~~l~~~~digIIlIte~ia~~i~~~i~~~~-~~~~~P~ 82 (102)
T 2i4r_A 10 HMLAVVGDPDFTIGFMLAGISDIYEVTSDEEIVKAV------EDVLKRDDVGVVIMKQEYLKKLPPVLRREI-DEKVEPT 82 (102)
T ss_dssp CEEEEEECHHHHHHHHHTTCCCEEECCSHHHHHHHH------HHHHHCSSEEEEEEEGGGSTTSCHHHHTTT-TTCCSSE
T ss_pred eeEEEEcCHHHHHHHHHcCCCcccCCCCHHHHHHHH------HHHhhCCCeEEEEEeHHHHHHHHHHHHHHH-hCCCccE
Confidence 358999999988888889998 2 3 445565443 2333 368889999999988875443322 2225666
Q ss_pred cc
Q 031726 137 LL 138 (154)
Q Consensus 137 ~v 138 (154)
++
T Consensus 83 Ii 84 (102)
T 2i4r_A 83 FV 84 (102)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 23
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=57.45 E-value=17 Score=24.58 Aligned_cols=53 Identities=15% Similarity=0.323 Sum_probs=39.6
Q ss_pred cEEEEecChhhHHHHHHcCCC-c--c-CHHHHHHHhhchHHHHHhh--hcccEEEEchhhHhhhh
Q 031726 63 MKVCMLGDAQHVEEAEKIGLD-Y--M-DVEGLKKLNKNKKLVKKLA--KKYHAFLASESVIKQIP 121 (154)
Q Consensus 63 ~kI~Vf~~~~~~~~Ak~aGa~-~--v-g~~eL~k~~~~~k~~kkl~--~~~d~~ia~~~~m~~l~ 121 (154)
.||+|++|.+...--+-+|+. + + +.+|+.+.. +++. .+|-.++-|.++...+.
T Consensus 1 MkiaVIGD~dtv~GFrLaGi~~v~~v~~~ee~~~~~------~~l~~~~digIIlite~~a~~i~ 59 (101)
T 2ov6_A 1 MELAVIGKSEFVTGFRLAGISKVYETPDIPATESAV------RSVLEDKSVGILVMHNDDIGNLP 59 (101)
T ss_dssp CCEEEEECHHHHHHHHHHTCCEEEECCSTTTHHHHH------HHHHHHTSSSEEEEEHHHHTTCT
T ss_pred CEEEEEECHHHHHHHHHcCCCceEecCCHHHHHHHH------HHHhhCCCeEEEEEcHHHHHHhH
Confidence 379999998888878888999 3 3 556665443 2233 47999999999998776
No 24
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=51.35 E-value=12 Score=25.71 Aligned_cols=37 Identities=22% Similarity=0.392 Sum_probs=27.2
Q ss_pred CCCCcEEEEecCh---hhHHHHHHcCCCccCHHHHHHHhh
Q 031726 59 PRPKMKVCMLGDA---QHVEEAEKIGLDYMDVEGLKKLNK 95 (154)
Q Consensus 59 ~~k~~kI~Vf~~~---~~~~~Ak~aGa~~vg~~eL~k~~~ 95 (154)
+.++...+|.++. ...+.|++.|+.+++.+++.+++.
T Consensus 67 VSkkTd~LV~G~~~g~sK~~kA~~lgI~Ii~E~~f~~ll~ 106 (109)
T 2k6g_A 67 VSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIR 106 (109)
T ss_dssp CCTTCCEEEECBCCCHHHHHHHHHHTCEEECHHHHHHHHH
T ss_pred ccCCceEEEECCCCChHHHHHHHHcCCeEEeHHHHHHHHH
Confidence 3466677777753 356778889999999999877653
No 25
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=46.76 E-value=29 Score=23.78 Aligned_cols=54 Identities=15% Similarity=0.259 Sum_probs=40.2
Q ss_pred CcEEEEecChhhHHHHHHcCCCc--c-CHHHHHHHhhchHHHHHhh--hcccEEEEchhhHhhhh
Q 031726 62 KMKVCMLGDAQHVEEAEKIGLDY--M-DVEGLKKLNKNKKLVKKLA--KKYHAFLASESVIKQIP 121 (154)
Q Consensus 62 ~~kI~Vf~~~~~~~~Ak~aGa~~--v-g~~eL~k~~~~~k~~kkl~--~~~d~~ia~~~~m~~l~ 121 (154)
+.+|+|++|.+...--+-+|++. + +.+|+.+.. +++. .+|-.++-|.++...+.
T Consensus 3 ~mkiaVIgD~dtv~GFrLaGi~~~~v~~~ee~~~~~------~~l~~~~digIIlIte~~a~~i~ 61 (109)
T 2d00_A 3 PVRMAVIADPETAQGFRLAGLEGYGASSAEEAQSLL------ETLVERGGYALVAVDEALLPDPE 61 (109)
T ss_dssp CCCEEEEECHHHHHHHHHTTSEEEECSSHHHHHHHH------HHHHHHCCCSEEEEETTTCSCHH
T ss_pred ccEEEEEeCHHHHHHHHHcCCeEEEeCCHHHHHHHH------HHHhhCCCeEEEEEeHHHHHhhH
Confidence 46899999988888888899982 3 556665443 2333 47999999999887766
No 26
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=46.52 E-value=23 Score=23.85 Aligned_cols=47 Identities=11% Similarity=0.160 Sum_probs=30.3
Q ss_pred CcEEEEecChh---------hHHHHHHcCCC----ccCHHHHHHHhhchHHHHHhhhcccEEEEchhhHh
Q 031726 62 KMKVCMLGDAQ---------HVEEAEKIGLD----YMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIK 118 (154)
Q Consensus 62 ~~kI~Vf~~~~---------~~~~Ak~aGa~----~vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~ 118 (154)
..+|+++|..- ..+.+++.|.+ .++..++.+. ..+||++|.++++-.
T Consensus 4 ~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~----------~~~~D~Ii~t~~l~~ 63 (109)
T 2l2q_A 4 SMNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEV----------VDRFDVVLLAPQSRF 63 (109)
T ss_dssp CEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHHH----------TTTCSEEEECSCCSS
T ss_pred ceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhh----------cCCCCEEEECCccHH
Confidence 36799999742 23556677765 3455555432 267999999988654
No 27
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=46.45 E-value=12 Score=25.71 Aligned_cols=56 Identities=13% Similarity=0.062 Sum_probs=34.5
Q ss_pred CCCcEEEEecChh---------hHHHHHHcCCC--c--cCHHHHHHHhhchHHHHHhhhcccEEEEchhhH---hhhhhh
Q 031726 60 RPKMKVCMLGDAQ---------HVEEAEKIGLD--Y--MDVEGLKKLNKNKKLVKKLAKKYHAFLASESVI---KQIPRL 123 (154)
Q Consensus 60 ~k~~kI~Vf~~~~---------~~~~Ak~aGa~--~--vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m---~~l~r~ 123 (154)
.++.+|+++|.+- ..+.|++.|.+ + .+..++.+ ...+||.+|..|.+- .++-+.
T Consensus 4 ~~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~~----------~~~~~DvvLLgPQV~y~~~~ik~~ 73 (108)
T 3nbm_A 4 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYD----------IMGVYDLIILAPQVRSYYREMKVD 73 (108)
T ss_dssp -CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCTT----------TGGGCSEEEECGGGGGGHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHHh----------hccCCCEEEEChHHHHHHHHHHHH
Confidence 4677999999742 34677777887 2 22323211 237799999988865 444444
Q ss_pred hC
Q 031726 124 LG 125 (154)
Q Consensus 124 LG 125 (154)
..
T Consensus 74 ~~ 75 (108)
T 3nbm_A 74 AE 75 (108)
T ss_dssp HT
T ss_pred hh
Confidence 43
No 28
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=46.32 E-value=5.8 Score=30.32 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=23.2
Q ss_pred cEEEEecChhhHHHHHHcCCCccCHH
Q 031726 63 MKVCMLGDAQHVEEAEKIGLDYMDVE 88 (154)
Q Consensus 63 ~kI~Vf~~~~~~~~Ak~aGa~~vg~~ 88 (154)
.|||=+++.+.++.|.++|||++|..
T Consensus 4 vKICGit~~eda~~a~~~GaD~iGfi 29 (205)
T 1nsj_A 4 VKICGITNLEDALFSVESGADAVGFV 29 (205)
T ss_dssp EEECCCCSHHHHHHHHHHTCSEEEEE
T ss_pred EEECCCCcHHHHHHHHHcCCCEEEEE
Confidence 58999999999999999999988775
No 29
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=46.27 E-value=6 Score=30.25 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=23.1
Q ss_pred cEEEEecChhhHHHHHHcCCCccCHH
Q 031726 63 MKVCMLGDAQHVEEAEKIGLDYMDVE 88 (154)
Q Consensus 63 ~kI~Vf~~~~~~~~Ak~aGa~~vg~~ 88 (154)
.|||=+++.+.++.|.++||+++|..
T Consensus 3 vKICGit~~eda~~a~~~GaD~iGfi 28 (203)
T 1v5x_A 3 VKICGITRLEDALLAEALGAFALGFV 28 (203)
T ss_dssp EEECCCCCHHHHHHHHHHTCSEEEEE
T ss_pred EEEcCCCcHHHHHHHHHcCCCEEEEE
Confidence 58999999999999999999988765
No 30
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=45.07 E-value=31 Score=23.94 Aligned_cols=68 Identities=18% Similarity=0.307 Sum_probs=45.2
Q ss_pred cEEEEecChhhHHHHHHcCCC--cc-CHHHHHHHhhchHHHHHhh-hcccEEEEchhhHhhhhhhhCCCCCCCCCCCCcc
Q 031726 63 MKVCMLGDAQHVEEAEKIGLD--YM-DVEGLKKLNKNKKLVKKLA-KKYHAFLASESVIKQIPRLLGPGLNKAGNSLPLL 138 (154)
Q Consensus 63 ~kI~Vf~~~~~~~~Ak~aGa~--~v-g~~eL~k~~~~~k~~kkl~-~~~d~~ia~~~~m~~l~r~LGpgL~p~~K~pt~v 138 (154)
.||+|++|.+...--+-+|++ .+ +.+|+.+.. ++++ .+|-.++-|.++...+...+-. +.+...|+++
T Consensus 3 mKiaVIGD~Dtv~GFrLaGie~~~v~~~ee~~~~~------~~l~~~digIIlIte~ia~~i~~~i~~--~~~~~~P~Iv 74 (115)
T 3aon_B 3 YKIGVVGDKDSVSPFRLFGFDVQHGTTKTEIRKTI------DEMAKNEYGVIYITEQCANLVPETIER--YKGQLTPAII 74 (115)
T ss_dssp EEEEEESCHHHHGGGGGGTCEEECCCSHHHHHHHH------HHHHHTTEEEEEEEHHHHTTCHHHHHH--HHTSSSCEEE
T ss_pred eEEEEEECHHHHHHHHHcCCeEEEeCCHHHHHHHH------HHHHhcCceEEEEeHHHHHHhHHHHHH--HhCCCCCEEE
Confidence 489999998877767788988 23 555565443 2333 3788899999999887754433 2244456654
No 31
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=44.68 E-value=9.6 Score=26.10 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=28.2
Q ss_pred CCcEEEEecChh----------hHHHHHHcCCCc----cCHHHHHHHhhchHHHHHhhhcccEEEEchhhH
Q 031726 61 PKMKVCMLGDAQ----------HVEEAEKIGLDY----MDVEGLKKLNKNKKLVKKLAKKYHAFLASESVI 117 (154)
Q Consensus 61 k~~kI~Vf~~~~----------~~~~Ak~aGa~~----vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m 117 (154)
+..+|+++|..- ..+.+++.|.++ .+..++.. . ..+||++|+++++-
T Consensus 20 ~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~---~-------~~~~DlIist~~l~ 80 (113)
T 1tvm_A 20 SKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIET---Y-------MDGVHLICTTARVD 80 (113)
T ss_dssp SSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTT---S-------TTSCSEEEESSCCC
T ss_pred cccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhh---c-------cCCCCEEEECCccc
Confidence 345899999732 125566778762 23333311 1 25799999987654
No 32
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=42.87 E-value=23 Score=23.95 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=30.2
Q ss_pred CcEEEEecChh----------hHHHHHHcCCC-c----cCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhh
Q 031726 62 KMKVCMLGDAQ----------HVEEAEKIGLD-Y----MDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQ 119 (154)
Q Consensus 62 ~~kI~Vf~~~~----------~~~~Ak~aGa~-~----vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~ 119 (154)
..+|++.|..- ..+.+++.|.+ + .+..++... ..+||++|+++++-..
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~~~~~----------~~~~DlIi~t~~l~~~ 80 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGEAKGL----------ASNYDIVVASNHLIHE 80 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHHHHHH----------GGGCSEEEEETTTGGG
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHHHhhc----------cCCCcEEEECCchHHH
Confidence 45899999742 12456677765 2 344444321 2679999999877544
No 33
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=41.38 E-value=20 Score=24.83 Aligned_cols=38 Identities=8% Similarity=0.112 Sum_probs=25.7
Q ss_pred CCCcEEEEecC-----hhhHHHHHHcCCCccCHHHHHHHhhch
Q 031726 60 RPKMKVCMLGD-----AQHVEEAEKIGLDYMDVEGLKKLNKNK 97 (154)
Q Consensus 60 ~k~~kI~Vf~~-----~~~~~~Ak~aGa~~vg~~eL~k~~~~~ 97 (154)
.+....+|.++ +...+.|++.|+.++..+.|..+....
T Consensus 45 skkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~~l~~~~~~~ 87 (113)
T 2cok_A 45 NKASLCISTKKEVEKMNKKMEEVKEANIRVVSEDFLQDVSAST 87 (113)
T ss_dssp TTCSEEECCHHHHHHCCHHHHHHHHTTCCEECTHHHHHHHSCC
T ss_pred ccCccEEEECCCCCCCChHHHHHHHCCCcEEeHHHHHHHHhhc
Confidence 34554544442 235688999999999999887765443
No 34
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=40.05 E-value=18 Score=24.05 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=25.7
Q ss_pred CCcEEEEecC--hhhHHHHHHcCCCccCHHHHHHHhh
Q 031726 61 PKMKVCMLGD--AQHVEEAEKIGLDYMDVEGLKKLNK 95 (154)
Q Consensus 61 k~~kI~Vf~~--~~~~~~Ak~aGa~~vg~~eL~k~~~ 95 (154)
++...+|.++ +...+.|++.|+.+++.+++.+.+.
T Consensus 43 kkt~~LV~g~~~gsK~~kA~~lgI~Ii~E~~f~~~l~ 79 (92)
T 1l7b_A 43 RKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLE 79 (92)
T ss_dssp SSCCCBEECSSSSTTHHHHHCSSSCCEEHHHHHHHHH
T ss_pred CCeeEEEeCCCCChHHHHHHHcCCcEEeHHHHHHHHH
Confidence 4555655554 3467889999999999999876654
No 35
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=39.82 E-value=27 Score=23.55 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=31.1
Q ss_pred cEEEEecChh---------hHHHHHHcCCCc----cCHHHHHHHhhchHHHHHhhhcccEEEEchhhHhhh
Q 031726 63 MKVCMLGDAQ---------HVEEAEKIGLDY----MDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQI 120 (154)
Q Consensus 63 ~kI~Vf~~~~---------~~~~Ak~aGa~~----vg~~eL~k~~~~~k~~kkl~~~~d~~ia~~~~m~~l 120 (154)
.+|+++|..- ..+.|++.|.++ ++..++... ..+||+++.+|.+--.+
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~~~~----------~~~~Dvil~~pqv~~~~ 64 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEK----------GQNADVVLLGPQIAYML 64 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSSTTHH----------HHHCSEEEECTTSGGGH
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhh----------ccCCCEEEEccchhhhH
Confidence 4799999642 346677888872 344443221 26799999998866443
No 36
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.09 E-value=35 Score=23.59 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=21.6
Q ss_pred CCCcEEEEecCh---hhHHHHHHcCCCccCHHHHHHHh
Q 031726 60 RPKMKVCMLGDA---QHVEEAEKIGLDYMDVEGLKKLN 94 (154)
Q Consensus 60 ~k~~kI~Vf~~~---~~~~~Ak~aGa~~vg~~eL~k~~ 94 (154)
.++...+|.++. ...+.|++.|+.++..+++.+++
T Consensus 58 SkkTd~LV~G~~~g~sKl~KA~~lgI~IisE~~f~~ll 95 (112)
T 2ebu_A 58 SKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLI 95 (112)
T ss_dssp CSSCCEEEECSSCCSHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred cCCeeEEEecCCCChHHHHHHHHcCCeEEeHHHHHHHH
Confidence 345566666542 34566777777777777766554
No 37
>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}
Probab=34.78 E-value=12 Score=29.11 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=20.3
Q ss_pred cCCCCCCCcEEEEecChhhHHHHHHcCCCccCH
Q 031726 55 LPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDV 87 (154)
Q Consensus 55 LP~~~~k~~kI~Vf~~~~~~~~Ak~aGa~~vg~ 87 (154)
+|++..=..|||=+++.+.++ |-++|||++|.
T Consensus 15 ~p~~~~M~VKICGit~~ed~~-a~~~gaD~iGf 46 (228)
T 4aaj_A 15 VPRGSHMFVKICGIKSLEELE-IVEKHADATGV 46 (228)
T ss_dssp -----CCEEEECCCCSHHHHH-HHHTTCSEEEE
T ss_pred CCCCCceEEEECCCCcHHHHH-HHHcCCCEEEE
Confidence 455443346999999888775 56889997764
No 38
>2i52_A Hypothetical protein; structural genomics, unknown function, PSI, protein structur initiative; 2.08A {Picrophilus torridus} SCOP: d.316.1.1
Probab=32.86 E-value=37 Score=24.13 Aligned_cols=27 Identities=15% Similarity=0.285 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHHHHhhhhhccCCCceeEEEEEE
Q 031726 5 QSDALREAVSSIVQYSKETKKRNFTETIELQIG 37 (154)
Q Consensus 5 ~~~~l~~ai~~~~~~~~~~~~~~f~esvel~i~ 37 (154)
+.+.|+.||++++++. -|.+.|++.|+
T Consensus 42 ta~sLE~AIE~si~~Q------P~v~~v~V~I~ 68 (121)
T 2i52_A 42 NASMAEEFIERSTMIQ------PFVENVRISIN 68 (121)
T ss_dssp THHHHHHHHHHHHTTS------TTEEEEEEEEC
T ss_pred cHHHHHHHHHHHHhcC------CceEEEEEEEe
Confidence 5678888888887643 78898888886
No 39
>2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function, NYSGXRC, PSI-2, prote structure initiative; HET: MSE OXG; 1.89A {Methanocaldococcus jannaschii}
Probab=29.50 E-value=53 Score=23.36 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHHHHhhhhhccCCCceeEEEEEE
Q 031726 5 QSDALREAVSSIVQYSKETKKRNFTETIELQIG 37 (154)
Q Consensus 5 ~~~~l~~ai~~~~~~~~~~~~~~f~esvel~i~ 37 (154)
+.+.|+.||++++++. -|.+.|.+.|+
T Consensus 47 ta~sLE~AIE~si~~Q------P~v~~v~V~I~ 73 (122)
T 2ogf_A 47 NKESLERAIEEAMKNQ------PCVYDIKVKIR 73 (122)
T ss_dssp THHHHHHHHHHHHHTS------TTEEEEEEEEC
T ss_pred cHHHHHHHHHHHHhcC------CceEEEEEEEe
Confidence 5678899999988753 78888888886
No 40
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_A
Probab=29.42 E-value=22 Score=27.32 Aligned_cols=19 Identities=16% Similarity=-0.073 Sum_probs=15.0
Q ss_pred hhhhhhhCC-CCCCCCCCCC
Q 031726 118 KQIPRLLGP-GLNKAGNSLP 136 (154)
Q Consensus 118 ~~l~r~LGp-gL~p~~K~pt 136 (154)
+.||+.||| |+||+.+.+|
T Consensus 121 riLG~~l~p~gk~P~p~~~t 140 (216)
T 3iz5_A 121 RLLGPGLNKAGKFPTLVSHQ 140 (216)
T ss_dssp HHHTTTCSCCTTTTCBCSCH
T ss_pred HHhcccccccCCcCCCcCCc
Confidence 346899999 9999987654
No 41
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=28.05 E-value=18 Score=31.07 Aligned_cols=27 Identities=30% Similarity=0.318 Sum_probs=23.7
Q ss_pred CcEEEEecChhhHHHHHHcCCCccCHH
Q 031726 62 KMKVCMLGDAQHVEEAEKIGLDYMDVE 88 (154)
Q Consensus 62 ~~kI~Vf~~~~~~~~Ak~aGa~~vg~~ 88 (154)
..|||=+++.+.+..|.++||+++|.-
T Consensus 256 ~~KICGit~~eda~~a~~~Gad~iGfI 282 (452)
T 1pii_A 256 ENKVCGLTRGQDAKAAYDAGAIYGGLI 282 (452)
T ss_dssp SCEECCCCSHHHHHHHHHHTCSEEEEE
T ss_pred hccccCCCcHHHHHHHHhcCCCEEEee
Confidence 569999999999999999999977764
No 42
>3l7p_A Putative nitrogen regulatory protein PII; SMU_1 transcription, transcription regulation; 2.00A {Streptococcus mutans} SCOP: d.58.5.1
Probab=20.75 E-value=1.2e+02 Score=20.63 Aligned_cols=66 Identities=21% Similarity=0.330 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHHHHhhhhhccCCCceeEEEEEEecccCCCC--CCceeeeEEcCCCCCCCcEEEEecChhhHHHHHH
Q 031726 5 QSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK--DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEK 79 (154)
Q Consensus 5 ~~~~l~~ai~~~~~~~~~~~~~~f~esvel~i~lk~~d~k~--~~~i~g~v~LP~~~~k~~kI~Vf~~~~~~~~Ak~ 79 (154)
.++++. .|.+||... .|+..+.+. +++|.-..+ ...++|.-....- -++.+|-++++++..+.+.+
T Consensus 11 rp~kl~-~Vk~AL~~~------G~d~g~Tv~-~V~G~G~q~g~~~~yrG~~~~~~~-~pk~kieivV~d~~ve~vv~ 78 (115)
T 3l7p_A 11 RSDKLE-DLKAALVQS------GFIKGMTIS-QVLGFGNQRGYTEYVRGQKITPTL-LAKVKVEIVAHDAAVEEMIT 78 (115)
T ss_dssp EGGGHH-HHHHHHHHH------TCGGGEEEE-EEEEEC----------------CE-EEEEEEEEEECGGGHHHHHH
T ss_pred CHHHHH-HHHHHHHHC------CCCccEEEE-EEEeEcccCCCceeeccceeeecc-cceEEEEEEEcHHHHHHHHH
Confidence 445554 467776544 443344443 444544442 3456664332222 25678999998877655543
Done!