RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 031726
(154 letters)
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 217
Score = 96.7 bits (240), Expect = 3e-26
Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 3/150 (2%)
Query: 7 DALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKV 65
++L EA+ + ++ KRNFT+++E+ + K D +K D + V LP P +V
Sbjct: 6 ESLIEALK-LALSTEYNVKRNFTQSVEIILTFKGIDMKKGDLKLREIVPLPKQPSKAKRV 64
Query: 66 CMLGDAQHVEEAEKIGLD-YMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLL 124
++ ++ +E A+K + E L+KL K+ VKKLA++ FL ++ + R+L
Sbjct: 65 LVVPSSEQLEYAKKASPKVVITREELQKLQGQKRPVKKLARQNEWFLINQESMALAGRIL 124
Query: 125 GPGLNKAGNSLPLLLTKNPWSPKSTRLRQQ 154
GP L G L S R ++
Sbjct: 125 GPALGPRGKFPTPLPNTADISEYINRFKRS 154
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 212
Score = 92.5 bits (229), Expect = 9e-25
Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 2/147 (1%)
Query: 10 REAVSSIVQYSKET-KKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCM 67
REA+ V+ ++E K RNFT++ E LK D +K + R V LPH + K+ +
Sbjct: 3 REALLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAV 62
Query: 68 LGDAQHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPG 127
+G ++AE++GL + E +++L KNK+ ++K+AK + F+A ++ I R +G
Sbjct: 63 IGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVI 122
Query: 128 LNKAGNSLPLLLTKNPWSPKSTRLRQQ 154
L G + P RL++
Sbjct: 123 LGPRGKMPKPVPANANIKPLVERLKKT 149
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus
[TaxId: 274]}
Length = 224
Score = 60.8 bits (147), Expect = 1e-12
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Query: 12 AVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDA 71
+ KE F ET+E+ L + D+ G+V LPH +++V +
Sbjct: 17 TIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKG 76
Query: 72 QHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKA 131
+ ++EAE+ G DY+ E + + + + A +A+ V+ + LG L
Sbjct: 77 EKIKEAEEAGADYVGGEEIIQKILDGW------MDFDAVVATPDVMGAVGSKLGRILGPR 130
Query: 132 G 132
G
Sbjct: 131 G 131
>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation
bifunctional isomerase/decarboxylase HpcE {Escherichia
coli [TaxId: 562]}
Length = 216
Score = 26.0 bits (56), Expect = 2.1
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 55 LPHIPRPKMKVCMLG--DAQHVEEA 77
P +P P + LG A H E
Sbjct: 2 FPTLPHPHGTLFALGLNYADHASEL 26
>d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase,
PRAI {Thermus thermophilus [TaxId: 274]}
Length = 200
Score = 25.2 bits (54), Expect = 3.2
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 62 KMKVCMLGDAQHVEEAEKIGLDYM 85
++K+C + + AE +G +
Sbjct: 2 RVKICGITRLEDALLAEALGAFAL 25
>d1d2za_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster
[TaxId: 7227]}
Length = 102
Score = 24.5 bits (53), Expect = 3.2
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 52 SVKLPHIPRPKM-KVCMLGDAQHV--EEAEKIGLDYMDVEGLKKLNKNKK 98
++ + +P P ++C DA V + A + L VE + + +
Sbjct: 4 TMAIRLLPLPVRAQLCAHLDALDVWQQLATAVKLYPDQVEQISSQKQRGR 53
>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermus thermophilus [TaxId: 274]}
Length = 254
Score = 25.0 bits (54), Expect = 4.2
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 95 KNKKLVKKLAKKYHAFLASESVIKQ------IPRLLG 125
K+ +K L + A L S+++ + L+G
Sbjct: 218 SRKEELKALEGLFDAVLIGTSLMRAPDLEAALRELVG 254
>d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate
isomerase, PRAI {Escherichia coli [TaxId: 562]}
Length = 198
Score = 24.9 bits (53), Expect = 4.8
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 64 KVCMLGDAQHVEEAEKIGLDYM 85
KVC L Q + A G Y
Sbjct: 4 KVCGLTRGQDAKAAYDAGAIYG 25
>d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase,
PRAI {Thermotoga maritima [TaxId: 2336]}
Length = 205
Score = 24.5 bits (52), Expect = 6.3
Identities = 4/24 (16%), Positives = 13/24 (54%)
Query: 62 KMKVCMLGDAQHVEEAEKIGLDYM 85
++K+C + + + + + G D +
Sbjct: 3 RVKICGITNLEDALFSVESGADAV 26
>d1p99a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family)
{Staphylococcus aureus [TaxId: 1280]}
Length = 255
Score = 24.3 bits (52), Expect = 6.8
Identities = 9/53 (16%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 69 GDAQHVEEAEKIGLD-YMDVEGLKKLNKNKKLVKKLAKKYHAFLASESVIKQI 120
D +E++ + Y+++ + + + K K+ + YH S+ K +
Sbjct: 181 NDPIFLEKSNSDAVKPYINIVAVNDKDLDNKTYAKIVELYH----SKEAQKAL 229
>d1cmza_ a.91.1.1 (A:) Galpha interacting protein, GaIP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 128
Score = 23.8 bits (51), Expect = 6.9
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 84 YMDVEGLKKLNKNKKLVKKLAKKYHAFLASE 114
++ E LK + +K Y +++
Sbjct: 42 WLACEELKAEANQHVVDEKARLIYEDYVSIL 72
>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 23.9 bits (51), Expect = 9.8
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 95 KNKKLVKKLAKKYHAFLASESVIKQ 119
K+ + +K L K +A L S++K
Sbjct: 212 KDPRELKDLRGKVNAVLVGTSIMKA 236
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.131 0.365
Gapped
Lambda K H
0.267 0.0618 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 525,892
Number of extensions: 23681
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 20
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (22.9 bits)