Query 031727
Match_columns 154
No_of_seqs 106 out of 713
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 06:44:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lac_A Pyrrolidone-carboxylate 100.0 6.5E-41 2.2E-45 266.7 14.8 135 16-153 57-203 (215)
2 3ro0_A Pyrrolidone-carboxylate 100.0 8.7E-41 3E-45 267.2 14.0 135 16-153 58-203 (223)
3 4hps_A Pyrrolidone-carboxylate 100.0 8.2E-41 2.8E-45 268.1 13.0 135 16-153 79-225 (228)
4 3giu_A Pyrrolidone-carboxylate 100.0 7.1E-41 2.4E-45 266.5 11.5 133 16-151 58-202 (215)
5 2ebj_A Pyrrolidone carboxyl pe 100.0 1.7E-40 5.7E-45 260.3 12.4 130 16-149 53-191 (192)
6 1a2z_A Pyrrolidone carboxyl pe 100.0 6.1E-40 2.1E-44 261.9 15.3 135 16-153 57-208 (220)
7 1iu8_A Pyrrolidone-carboxylate 100.0 5E-40 1.7E-44 260.1 12.9 135 16-153 53-199 (206)
8 4gxh_A Pyrrolidone-carboxylate 100.0 1.9E-39 6.6E-44 258.4 15.0 136 15-153 57-204 (216)
9 1x10_A Pyrrolidone-carboxylate 100.0 2.5E-39 8.6E-44 256.4 15.2 136 16-154 56-207 (208)
10 2fi0_A Conserved domain protei 35.3 34 0.0012 21.9 3.1 20 76-95 59-78 (81)
11 2eo1_A OBSCN protein, cDNA FLJ 35.3 15 0.00051 23.1 1.4 27 97-131 75-101 (102)
12 2e7b_A Obscurin; IG-like domai 33.3 16 0.00056 22.9 1.3 28 97-132 72-99 (103)
13 3qc0_A Sugar isomerase; TIM ba 32.6 1.1E+02 0.0037 22.6 6.1 74 78-152 45-130 (275)
14 3ngf_A AP endonuclease, family 28.8 1.8E+02 0.0061 21.6 8.5 75 78-152 48-138 (269)
15 3tva_A Xylose isomerase domain 26.2 2E+02 0.0069 21.4 8.4 53 79-131 52-126 (290)
16 3mlc_A FG41 malonate semialdeh 24.6 55 0.0019 22.8 3.0 53 95-153 42-94 (136)
17 1jhl_L IGG1-kappa D11.15 FV (l 21.9 21 0.00073 22.8 0.2 11 98-108 81-91 (108)
18 1qfw_M FV, antibody (anti beta 21.4 22 0.00076 22.8 0.2 11 98-108 81-91 (108)
19 3u0h_A Xylose isomerase domain 21.2 2.5E+02 0.0084 20.6 6.6 73 78-151 47-128 (281)
20 2k1m_A Myosin-binding protein 20.3 24 0.00083 21.8 0.2 11 97-107 72-82 (95)
No 1
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis}
Probab=100.00 E-value=6.5e-41 Score=266.70 Aligned_cols=135 Identities=29% Similarity=0.469 Sum_probs=123.0
Q ss_pred CCccCCcEEEEecccCCCcceeeeeeEecCCCCCCCCCCCCCCCCCceecCCCCcccccccCCcHHHHHHHHHHCCCceE
Q 031727 16 PHRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVV 95 (154)
Q Consensus 16 ~~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~ 95 (154)
.++++||+|||+|++++|+.|++||+|+|..+|++||++|++|.+++|.. +||. .++|+||+++++++|++.|+|++
T Consensus 57 ~~~~~Pd~VihvG~aggr~~i~lEr~A~N~~d~~~pDn~G~~P~~~~i~~-~Gp~--~~~s~Lpv~~~v~~l~~~gipa~ 133 (215)
T 3lac_A 57 IEELAPEFIICIGQAGGRPDITIERVAINIDDARIADNEGNQPVDVPVVE-EGPA--AYWSTLPMKAIVKKLQEEGIPAS 133 (215)
T ss_dssp HHHHCCSEEEEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCSSBCSST-TSCS--EEECCSCHHHHHHHHHHTTCCEE
T ss_pred HHhhCCCeEEEeccCCCCceEEEEEEEeccCCCcCCCcCCCCCCCCcCcC-CCCc--eeecCCCHHHHHHHHHhCCCcEE
Confidence 46789999999999999999999999999889999999999999999985 7875 46899999999999999999999
Q ss_pred ecCCCCcchhhHHHHHHHHHHhhc--CCceEEEEcCCCC----------CCChHHHHHHHHHHHHHHHhh
Q 031727 96 ISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFS----------TIDEDTQMQFVATLFEAVAST 153 (154)
Q Consensus 96 ~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FVHVP~~~----------~~~~e~~~~~v~~lI~~ia~~ 153 (154)
+|+|||+|||||+||+||++.+++ +.+++|||||+++ .++.|++.+.++..|+++.++
T Consensus 134 vS~dAG~yvCN~i~Y~sL~~~~~~~~~~~~gFIHVP~~~~q~~~~~~~p~m~~~~~~~al~~~i~~~~~~ 203 (215)
T 3lac_A 134 VSQTAGTFVCNHLFYGLMHELEKHDTKMKGGFIHIPFLPEQASNYPGQPSMSLSTIRKGIELAVEVTTTV 203 (215)
T ss_dssp EESCCCSSHHHHHHHHHHHHHGGGTTSSEEEEEEECCCHHHHTTSTTCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred EcCCCCccccHHHHHHHHHHHHhcCCCceEEEEEeCCChHHhccCCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998654 5789999999985 467888899999999988763
No 2
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A
Probab=100.00 E-value=8.7e-41 Score=267.24 Aligned_cols=135 Identities=25% Similarity=0.362 Sum_probs=123.0
Q ss_pred CCccCCcEEEEecccCCCcceeeeeeEecCCCCCCCCCCCCCCCCCceecCCCCcccccccCCcHHHHHHHHHHCCCceE
Q 031727 16 PHRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVV 95 (154)
Q Consensus 16 ~~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~ 95 (154)
+++++||+|||+|++++|+.|++||+|+|..+|++||++|++|.+++|.+ +||. .++|+||+++++++|++.|+|++
T Consensus 58 i~~~~Pd~VihvG~aggr~~i~lEr~A~N~~d~ripDn~G~~P~d~~i~~-~Gp~--a~~stLpv~~~v~~l~~~gipa~ 134 (223)
T 3ro0_A 58 MKKHQPDIIICVGQAGGRMQITPERVAINLNEARIPDNEGNQPVGEDISQ-GGPA--AYWTGLPIKRIVEEIKKEGIPAA 134 (223)
T ss_dssp HHHHCCSEEEEEEECTTCCSBEEBSEEESCBCCSSCCTTSCCCCSBCSST-TSCS--EEECCSCHHHHHHHHHHTTCCBC
T ss_pred HHHhCCCEEEEeccCCCCceEEEEEEEecCCCCCCCCCCCCCCCCCCCcC-CCCc--eeecCCCHHHHHHHHHHCCCCEE
Confidence 46789999999999999999999999999888999999999999999986 7876 47899999999999999999999
Q ss_pred ecCCCCcchhhHHHHHHHHHHhhc--CCceEEEEcCCCC---------CCChHHHHHHHHHHHHHHHhh
Q 031727 96 ISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFS---------TIDEDTQMQFVATLFEAVAST 153 (154)
Q Consensus 96 ~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FVHVP~~~---------~~~~e~~~~~v~~lI~~ia~~ 153 (154)
+|+|||+|||||+||+||++.+++ +.+++|||||+++ .++.|++.+.++..|+++.++
T Consensus 135 vS~dAG~yvCN~iyY~sL~~~~~~~~~~~~gFIHVP~l~eq~~~~~~psm~~~~~~~al~~~i~~~~~~ 203 (223)
T 3ro0_A 135 VSYTAGTFVCNHLFYGLMDEISRHHPHIRGGFIHIPYIPEQTLQKSAPSLSLDHITKALKIAAVTAAAH 203 (223)
T ss_dssp CBSCCCSSHHHHHHHHHHHHHHHHCTTCEEEEEEECBCGGGCSSSCCCBCCHHHHHHHHHHHHHHHHHC
T ss_pred EeCCCCcccchHHHHHHHHHHHhcCCCceEEEEEeCCChHHhccCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998654 5789999999984 367788889999999988765
No 3
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=100.00 E-value=8.2e-41 Score=268.12 Aligned_cols=135 Identities=27% Similarity=0.445 Sum_probs=123.5
Q ss_pred CCccCCcEEEEecccCCCcceeeeeeEecCCCCCCCCCCCCCCCCCceecCCCCcccccccCCcHHHHHHHHHHCCCceE
Q 031727 16 PHRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVV 95 (154)
Q Consensus 16 ~~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~ 95 (154)
+++++||+|||+|++++|+.|++||+|+|..+|++||++|++|.+++|.+ +||. .++|+||+++++++|++.|+|++
T Consensus 79 i~~~~Pd~VihvG~aggr~~i~lEr~A~N~~d~~~pDn~G~~P~~~~i~~-~Gp~--a~~stLpvk~~v~~l~~~Gipa~ 155 (228)
T 4hps_A 79 VDKYQPELVISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTPVIV-DGPA--AYFSRLPIKTMVNALNTAGIPAS 155 (228)
T ss_dssp HHHHCCSEEEEEEECTTCSSEEEECEEESCEECSSCCTTSCCCEEECSST-TCCS--EEECCSCHHHHHHHHHHTTCCEE
T ss_pred HHhhCCCEEEEeccCCCCceEEEEEEEeccCCCCCCCcCCCCCCCCcCcC-CCCc--eeeeCCCHHHHHHHHHHcCCcEE
Confidence 46789999999999999999999999999878999999999999999985 7876 47899999999999999999999
Q ss_pred ecCCCCcchhhHHHHHHHHHHhhc--CCceEEEEcCCCCC----------CChHHHHHHHHHHHHHHHhh
Q 031727 96 ISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFST----------IDEDTQMQFVATLFEAVAST 153 (154)
Q Consensus 96 ~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FVHVP~~~~----------~~~e~~~~~v~~lI~~ia~~ 153 (154)
+|+|||+|||||+||+||++..++ +.+++|||||++++ ++.|++.+.++..|+++.++
T Consensus 156 vS~dAGtYvCN~iyY~sL~~~~~~~~~~~~gFIHVP~l~eq~~~~~~~psmsl~~~~~al~~~i~~~~~~ 225 (228)
T 4hps_A 156 VSQTAGTFVCNHVMYGLLHYLAQNTPSVRGGFIHVPYLPEQAVKDGNQSSMTLMLMTLALKIAIETAWKN 225 (228)
T ss_dssp EESCCCSSHHHHHHHHHHHHHHHHCTTSEEEEEEECCCGGGGCSSSCCCCCCHHHHHHHHHHHHHHHHHC
T ss_pred EeCCCCcchhHHHHHHHHHHHHhcCCCceEEEEEcCCchHhhccCCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999997643 57899999999975 67788899999999998764
No 4
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0
Probab=100.00 E-value=7.1e-41 Score=266.49 Aligned_cols=133 Identities=23% Similarity=0.365 Sum_probs=120.6
Q ss_pred CCccCCcEEEEecccCCCcceeeeeeEecCCCCCCCCCCCCCCCCCceecCCCCcccccccCCcHHHHHHHHHHCCCceE
Q 031727 16 PHRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVV 95 (154)
Q Consensus 16 ~~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~ 95 (154)
+++++||+|||+|++++|+.|++||+|+|..+|++||++|++|.+.+|.. +||. .++|+||+++++++|++.|+|++
T Consensus 58 i~~~~Pd~Vi~vG~a~gr~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~-~gp~--~~~stLpv~~iv~~l~~~gipa~ 134 (215)
T 3giu_A 58 LASNHYDVVLAIGQAGGRNAITPERVAINIDDARIPDNDDFQPIDQAIHL-DGAP--AYFSNLPVKAMTQSIINQGLPGA 134 (215)
T ss_dssp HHHSCCSEEEEEEECTTCCSBEEBCEEESCEECSSCCTTSCCCEEECSCT-TSCS--EEECCSCHHHHHHHHHHTTCCBC
T ss_pred HHHhCCCEEEEeccCCCCceEEEEEEEeccCCCCCCCCCCCCCCCCcccC-CCcc--ccccCCCHHHHHHHHHHcCCCEE
Confidence 46789999999999999999999999999978999999999999999985 6776 47899999999999999999999
Q ss_pred ecCCCCcchhhHHHHHHHHHHhhc--CCceEEEEcCCCC----------CCChHHHHHHHHHHHHHHH
Q 031727 96 ISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFS----------TIDEDTQMQFVATLFEAVA 151 (154)
Q Consensus 96 ~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FVHVP~~~----------~~~~e~~~~~v~~lI~~ia 151 (154)
+|+|||+|||||+||+||++.+++ +.+++|||||+++ .++.|++.+.++.+|+++.
T Consensus 135 vS~dAG~yvCN~i~Y~sL~~~~~~~~~~~~gFIHVP~~~eq~~~~~~~psm~~~~~~~al~~~i~~~~ 202 (215)
T 3giu_A 135 LSNSAGTFVCNHTLYHLGYLQDKHYPHLRFGFIHVPYIPEQVIGKPDTPSMPLEKIVAGLTAAIEAIS 202 (215)
T ss_dssp CBSCCCSSHHHHHHHHHHHHHHHTCTTCEEEEEEECCCGGGGTTCTTCCCCCHHHHHHHHHHHHHTCC
T ss_pred EeCCCCccccHHHHHHHHHHHHhcCCCceEEEEEeCCCHHHhccCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999998654 5789999999994 3577888888888888764
No 5
>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=1.7e-40 Score=260.34 Aligned_cols=130 Identities=27% Similarity=0.404 Sum_probs=117.6
Q ss_pred CCccCCcEEEEecccCCCcceeeeeeEecCCCCCCCCCCCCCCCCCceecCCCCcccccccCCcHHHHHHHHHHCCCceE
Q 031727 16 PHRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVV 95 (154)
Q Consensus 16 ~~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~ 95 (154)
.++++||+|||+|++++++.|++||+|+|..+|++||++|++|.+.+|.+ +||. .++|+||+++++++|++.|+|++
T Consensus 53 ~~~~~pd~vi~~G~a~~r~~i~~Er~A~N~~~~~~pDn~G~~p~~~~i~~-~gp~--~~~t~lp~~~iv~~l~~~g~p~~ 129 (192)
T 2ebj_A 53 LHREGPKAVLHLGLAEDRPVLTLERLAVNLLDFPRPDNRGRVLEDLPIVP-GGPL--ALPARFPVKPVLARWREAGIPGR 129 (192)
T ss_dssp HHTTCCSEEEEEEECTTCSSEEEECEEESCBCCSSCCTTCCCCCSBCSST-TSCS--EEECBSCHHHHHHHHHHTTCCEE
T ss_pred HHHhCCCEEEEeccCCCCceEEeEEEEEcCCCccCCCCCCCCCCCCceeC-CCCc--eeEcCCCHHHHHHHHHHCCCCEE
Confidence 45679999999999999999999999999878999999999999999986 6775 46899999999999999999999
Q ss_pred ecCCCCcchhhHHHHHHHHHHhhcCCceEEEEcCCCCC---------CChHHHHHHHHHHHHH
Q 031727 96 ISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFST---------IDEDTQMQFVATLFEA 149 (154)
Q Consensus 96 ~S~dAG~ylCn~iyY~sL~~~~~~~~~~~FVHVP~~~~---------~~~e~~~~~v~~lI~~ 149 (154)
+|+|||+|||||+||+||++.+ .+.+++|||||++++ ++.|+..+.++.+|++
T Consensus 130 vS~~AG~ylCN~i~Y~sL~~~~-~~~~~gFIHVP~~~~~~~~~~~p~~~~e~~~~al~~~i~~ 191 (192)
T 2ebj_A 130 PSLSAGSYLCNQAFYLSLYRLP-EEVPVGFLHLPPDETLALKRPRPYVPLEVQARAVRLALEH 191 (192)
T ss_dssp EESCCCSSHHHHHHHHHHHHSC-TTSCEEEEEECCCHHHHHHSCCCCCCHHHHHHHHHHHHTT
T ss_pred EeCCCCccHHHHHHHHHHHhcc-CCCceEEEEeCCChhhhcccCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999986 568999999998864 6777777888877764
No 6
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1
Probab=100.00 E-value=6.1e-40 Score=261.90 Aligned_cols=135 Identities=27% Similarity=0.446 Sum_probs=122.5
Q ss_pred CCccCCcEEEEecccCCCcceeeeeeEecCCCCCCCCCCCCCCCCCceecCCCCcccccccCCcHHHHHHHHHHCCCceE
Q 031727 16 PHRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVV 95 (154)
Q Consensus 16 ~~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~ 95 (154)
.++++||+|||+|++++++.|++||+|+|..++++||++|++|.+.+|.. +||. .++|+||+++++++|++.|+|++
T Consensus 57 i~~~~Pd~Vi~vG~aggr~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~-~gp~--~~~ttLpi~~iv~~l~~~gip~~ 133 (220)
T 1a2z_A 57 LEEIKPEIVINLGLAPTYSNITVERIAVNIIDARIPDNDGYQPIDEKIEE-DAPL--AYMATLPVRAITKTLRDNGIPAT 133 (220)
T ss_dssp HHHHCCSEEEEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCSSBCSCT-TSCS--EEECCSCHHHHHHHHHHTTCCEE
T ss_pred HHHhCCCEEEEecCCCCCceEEEEEEEccCCCCCcCCCCCCCCCCCCccC-CCCc--eeEcCCCHHHHHHHHHHCCCCEE
Confidence 35679999999999999999999999999988899999999999999985 7876 37899999999999999999999
Q ss_pred ecCCCCcchhhHHHHHHHHHHhhc--CCceEEEEcCCCC---------------CCChHHHHHHHHHHHHHHHhh
Q 031727 96 ISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFS---------------TIDEDTQMQFVATLFEAVAST 153 (154)
Q Consensus 96 ~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FVHVP~~~---------------~~~~e~~~~~v~~lI~~ia~~ 153 (154)
+|+|||+|||||+||+||++.+++ +.+++|||||+++ .++.|...+.++.+|++++++
T Consensus 134 vS~~AG~ylCN~i~Y~sL~~~~~~~~~~~~gFIHVP~l~~~~~~~~~~~~~~~p~ms~e~~~~al~~~i~~~~~~ 208 (220)
T 1a2z_A 134 ISYSAGTYLCNYVMFKTLHFSKIEGYPLKAGFIHVPYTPDQVVNKFFLLGKNTPSMCLEAEIKAIELAVKVSLDY 208 (220)
T ss_dssp EESCCCSSHHHHHHHHHHHHHHHHCCCSEEEEEEECCCGGGGTTCEEETTEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCcchhhHHHHHHHHHHHhccCCceeEEEEeCCChhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998765 7899999999887 356788888888888888764
No 7
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1
Probab=100.00 E-value=5e-40 Score=260.12 Aligned_cols=135 Identities=28% Similarity=0.469 Sum_probs=121.3
Q ss_pred CCccCCcEEEEecccCCCcceeeeeeEecCCCCCCCCCCCCCCCCCceecCCCCcccccccCCcHHHHHHHHHHCCCceE
Q 031727 16 PHRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVV 95 (154)
Q Consensus 16 ~~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~ 95 (154)
.++++||+|||+|++++++.|++||+|+|..++++||++|++|.+.+|.. +||. .++|+||+++++++|++.|+|++
T Consensus 53 ~~~~~Pd~vi~vG~a~gr~~i~~Er~A~N~~~~~~pDn~G~~p~~~~i~~-~gp~--~~~t~Lpi~~iv~~l~~~gip~~ 129 (206)
T 1iu8_A 53 LDDVRPDITINLGLAPGRTHISVERVAVNMIDARIPDNDGEQPKDEPIVE-GGPA--AYFATIPTREIVEEMKKNGIPAV 129 (206)
T ss_dssp HHHHCCSEEEEEEECTTCSSEEEECEEESCEECSSCCTTSCCCEEECSST-TCCS--EEECCSCHHHHHHHHHHTTCCEE
T ss_pred HHHhCCCEEEEcccCCCCceEEEEEEEecCCCCccCCCCCCCCCCCceeC-CCCc--eeEcCCCHHHHHHHHHhCCCCEE
Confidence 45679999999999999999999999999988899999999999999985 7876 46899999999999999999999
Q ss_pred ecCCCCcchhhHHHHHHHHHHhhc--CCceEEEEcCCCC----------CCChHHHHHHHHHHHHHHHhh
Q 031727 96 ISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFS----------TIDEDTQMQFVATLFEAVAST 153 (154)
Q Consensus 96 ~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FVHVP~~~----------~~~~e~~~~~v~~lI~~ia~~ 153 (154)
+|+|||+|||||+||+||++.+++ +.+++|||||+++ .++.|.+.+.++.+|++++++
T Consensus 130 vS~~AG~ylCN~i~Y~sL~~~~~~~~~~~~gFIHVP~~~~~~~~~~~~p~~~~~~~~~al~~~i~~~~~~ 199 (206)
T 1iu8_A 130 LSYTAGTYLCNFAMYLTLHTSATKGYPKIAGFIHVPYTPDQVLEKKNTPSMSLDLEIKGVEIAIRVAQSA 199 (206)
T ss_dssp EESCCCSSHHHHHHHHHHHHHHHHCCSSEEEEEEECBCGGGCTTCTTCCBCCHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCccHhhHHHHHHHHHHHhccCCCceEEEEcCCChhhhcccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998653 3399999999887 367788888888888888764
No 8
>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii}
Probab=100.00 E-value=1.9e-39 Score=258.40 Aligned_cols=136 Identities=27% Similarity=0.443 Sum_probs=121.4
Q ss_pred CCCccCCcEEEEecccCCCcceeeeeeEecCCCCCCCCCCCCCCCCCceecCCCCcccccccCCcHHHHHHHHHHCCCce
Q 031727 15 GPHRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDV 94 (154)
Q Consensus 15 ~~~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v 94 (154)
.+++++||+|||+|++++|+.|++|++|+|..++++||++|++|.+.+|.. +||. .++|+||+++++++|++.|+|+
T Consensus 57 ~i~~~~Pd~vi~~G~a~gr~~i~~Er~A~N~~~~r~pDn~G~~p~~~~i~~-~gp~--~~~t~Lpv~~iv~~l~~~gipa 133 (216)
T 4gxh_A 57 AVDKYQPELVISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTPVIV-DGPA--AYFSRLPIKTMVNALNTAGIPA 133 (216)
T ss_dssp HHHHHCCSEEEEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCCSBCSST-TCCS--EEECCSCHHHHHHHHHHTTCCE
T ss_pred HHHhhCCCEEEEeccCCCCCcceeEEEEcccCcccCCccCCCCCCCCcccC-CCch--heecCCCHHHHHHHHHHCCCCE
Confidence 346789999999999999999999999999999999999999999999986 6776 4689999999999999999999
Q ss_pred EecCCCCcchhhHHHHHHHHHHhhc--CCceEEEEcCCCCC----------CChHHHHHHHHHHHHHHHhh
Q 031727 95 VISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFST----------IDEDTQMQFVATLFEAVAST 153 (154)
Q Consensus 95 ~~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FVHVP~~~~----------~~~e~~~~~v~~lI~~ia~~ 153 (154)
++|+|||+|||||+||+||++.+++ +.+++|||||++++ ++.+...+.++..|++++++
T Consensus 134 ~vS~dAG~ylCN~i~Y~sL~~~~~~~~~~~~gFIHVP~lpeq~~~~~~~psm~l~~~~~al~~~i~~~~~~ 204 (216)
T 4gxh_A 134 SVSQTAGTFVCNHVMYGLLHYLAQNTPSVRGGFIHVPYLPEQAVKDGNQSSMTLMLMTLALKIAIETAWKN 204 (216)
T ss_dssp EEESCCCSSHHHHHHHHHHHHHHHHCTTSEEEEEEECBCHHHHHHHSSCCBCCHHHHHHHHHHHHHHHHHC
T ss_pred EEeCCCcccHHHHHHHHHHHHHHHcCCCCeEEEEEcCCChHhhccCCCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999998654 67899999998743 55677788888888887653
No 9
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=100.00 E-value=2.5e-39 Score=256.39 Aligned_cols=136 Identities=29% Similarity=0.459 Sum_probs=121.8
Q ss_pred CCccCCcEEEEecccCCCcceeeeeeEecCCCCCCCCCCCCCCCCCceecCCCCcccccccCCcHHHHHHHHHHCCCceE
Q 031727 16 PHRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVV 95 (154)
Q Consensus 16 ~~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~ 95 (154)
.++++||+|||+|++++|+.|++||+|+|..++++||++|++|.+.+|.. +||. .++|+||+++++++|++.|+|++
T Consensus 56 ~~~~~pd~vi~vG~a~gr~~i~iEr~A~N~~~~~~pDn~G~~p~~~~i~~-~gp~--~~~ttlpi~~iv~~l~~~gi~~~ 132 (208)
T 1x10_A 56 LEEIKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVP-GAPT--AYFSTLPIKKIMKKLHERGIPAY 132 (208)
T ss_dssp HHHHCCSEEEEEEECTTCCSEEEECEEESCBCCSSCCTTSCCCCSBCSST-TSCS--EEECCSCHHHHHHHHHHTTCCEE
T ss_pred HHHhCCCEEEEecCCCCCceEEeEEEEEcCCCcccCCCCCCCCCCCceeC-CCCc--eeEcCCCHHHHHHHHHhCCCCEE
Confidence 45679999999999999999999999999988899999999999999985 7876 37899999999999999999999
Q ss_pred ecCCCCcchhhHHHHHHHHHHhhc--CCceEEEEcCCCCC--------------CChHHHHHHHHHHHHHHHhhC
Q 031727 96 ISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFST--------------IDEDTQMQFVATLFEAVASTC 154 (154)
Q Consensus 96 ~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FVHVP~~~~--------------~~~e~~~~~v~~lI~~ia~~~ 154 (154)
+|+|||+|||||+||+||++.+++ +.+++|||||++++ ++.|...+.++.+|+++++++
T Consensus 133 vS~~AG~ylCN~i~Y~sL~~~~~~~~~~~~gFIHVP~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~i~~~~~~~ 207 (208)
T 1x10_A 133 ISNSAGLYLSNYVMYLSLHHSATKGYPKMSGFIHVPYIPEQIIDKIGKGQVPPSMSYEMALEAVKVAIEVALEEL 207 (208)
T ss_dssp EESCCCSSHHHHHHHHHHHHHHHHSCCSEEEEEEECBCGGGTHHHHTTSCCCCBCCHHHHHHHHHHHHHHHHHHC
T ss_pred EecCCCcchhhHHHHHHHHHHHhccCCCceEEEEcCCCchhhhcccCcCCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998653 34999999998763 456778888999999988764
No 10
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=35.31 E-value=34 Score=21.88 Aligned_cols=20 Identities=20% Similarity=0.577 Sum_probs=18.0
Q ss_pred cCCcHHHHHHHHHHCCCceE
Q 031727 76 TSLSTEAILKFLKKKGFDVV 95 (154)
Q Consensus 76 T~l~~~~l~~~l~~~g~~v~ 95 (154)
-++|++.+++.|++.|+.+.
T Consensus 59 ~gid~d~l~~~L~~~g~~~~ 78 (81)
T 2fi0_A 59 AGTPMDKIVRTLEANGYEVI 78 (81)
T ss_dssp HTCCHHHHHHHHHHTTCEEE
T ss_pred cCCCHHHHHHHHHHcCCEee
Confidence 47999999999999999875
No 11
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.28 E-value=15 Score=23.07 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=18.1
Q ss_pred cCCCCcchhhHHHHHHHHHHhhcCCceEEEEcCCC
Q 031727 97 SDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLF 131 (154)
Q Consensus 97 S~dAG~ylCn~iyY~sL~~~~~~~~~~~FVHVP~~ 131 (154)
..|+|.|.|..- .....-.+.|..|++
T Consensus 75 ~~D~G~Y~C~a~--------~~~~~~~l~V~~p~~ 101 (102)
T 2eo1_A 75 QAEAGEYSCEAG--------GQQLSFRLQVAGQCF 101 (102)
T ss_dssp TTTCSCEEEEET--------TEECCEEEEEESCCC
T ss_pred cccCEEEEEEcC--------CCcEEEEEEEeCCCC
Confidence 479999999551 112345678888876
No 12
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A
Probab=33.26 E-value=16 Score=22.88 Aligned_cols=28 Identities=29% Similarity=0.545 Sum_probs=18.0
Q ss_pred cCCCCcchhhHHHHHHHHHHhhcCCceEEEEcCCCC
Q 031727 97 SDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFS 132 (154)
Q Consensus 97 S~dAG~ylCn~iyY~sL~~~~~~~~~~~FVHVP~~~ 132 (154)
..|+|.|.|. .......-.+.|+.||..
T Consensus 72 ~~D~G~Y~C~--------~g~~~~~~~l~V~~~p~~ 99 (103)
T 2e7b_A 72 PQDSGRYSCS--------FGDQTTSATLTVTALPSG 99 (103)
T ss_dssp TTTCCCEEEE--------CSSCBCCBCEEEECCCCC
T ss_pred cccCEEEEEE--------ECCcEEEEEEEEEecccc
Confidence 3699999996 111123445788888754
No 13
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=32.64 E-value=1.1e+02 Score=22.56 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=40.8
Q ss_pred CcHHHHHHHHHHCCCceEecCCCCcchhh----------HHHHHHHHHHhhcCCceEEEEcCCCC--CCChHHHHHHHHH
Q 031727 78 LSTEAILKFLKKKGFDVVISDDAGRFVCN----------YVYYHSLRFAEQKGHKSLFVHVPLFS--TIDEDTQMQFVAT 145 (154)
Q Consensus 78 l~~~~l~~~l~~~g~~v~~S~dAG~ylCn----------~iyY~sL~~~~~~~~~~~FVHVP~~~--~~~~e~~~~~v~~ 145 (154)
.+++++.+.+++.|+.+..- .++.+++. ..+-+.+..++.-+.+.+-+|.-..+ ..+.+...+.+.+
T Consensus 45 ~~~~~~~~~l~~~gl~~~~~-~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~ 123 (275)
T 3qc0_A 45 IGLGEAGRIVRANGLKLTGL-CRGGFFPAPDASGREKAIDDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVE 123 (275)
T ss_dssp HCHHHHHHHHHHHTCEESCE-EEEECCCCSSHHHHHHHHHHHHHHHHHHHHTTCSCEEEECBCCCTTCCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCceEEe-ecCCCcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCCCCcCHHHHHHHHHH
Confidence 45778888999989875321 12223331 23445555555568888888852222 2344445555555
Q ss_pred HHHHHHh
Q 031727 146 LFEAVAS 152 (154)
Q Consensus 146 lI~~ia~ 152 (154)
.++.+++
T Consensus 124 ~l~~l~~ 130 (275)
T 3qc0_A 124 GIAAVLP 130 (275)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 14
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=28.78 E-value=1.8e+02 Score=21.58 Aligned_cols=75 Identities=15% Similarity=0.182 Sum_probs=39.7
Q ss_pred CcHHHHHHHHHHCCCceEe-cCCCCcchh---------------hHHHHHHHHHHhhcCCceEEEEcCCCCCCChHHHHH
Q 031727 78 LSTEAILKFLKKKGFDVVI-SDDAGRFVC---------------NYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQ 141 (154)
Q Consensus 78 l~~~~l~~~l~~~g~~v~~-S~dAG~ylC---------------n~iyY~sL~~~~~~~~~~~FVHVP~~~~~~~e~~~~ 141 (154)
.+.+++.+.+++.|+.+.. ....+.+.. -..+-+.+..++.-+.+.+-+|.......+.+...+
T Consensus 48 ~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~ 127 (269)
T 3ngf_A 48 FDADVIARELKQHNLTQVLFNMPPGDWAAGERGMAAISGREQEFRDNVDIALHYALALDCRTLHAMSGITEGLDRKACEE 127 (269)
T ss_dssp SCHHHHHHHHHHTTCEEEEEECCCSCTTTTCCBCTTCTTCHHHHHHHHHHHHHHHHHTTCCEEECCBCBCTTSCHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEEecCCCccccCCCCcCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEccCCCCCCCHHHHHH
Confidence 4678899999999988653 222221111 022344555555557777777654112234444444
Q ss_pred HHHHHHHHHHh
Q 031727 142 FVATLFEAVAS 152 (154)
Q Consensus 142 ~v~~lI~~ia~ 152 (154)
.+.+.++.+++
T Consensus 128 ~~~~~l~~l~~ 138 (269)
T 3ngf_A 128 TFIENFRYAAD 138 (269)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44554555443
No 15
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=26.25 E-value=2e+02 Score=21.38 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=32.5
Q ss_pred cHHHHHHHHHHCCCceEecC-C-CCcchhhH--------------------HHHHHHHHHhhcCCceEEEEcCCC
Q 031727 79 STEAILKFLKKKGFDVVISD-D-AGRFVCNY--------------------VYYHSLRFAEQKGHKSLFVHVPLF 131 (154)
Q Consensus 79 ~~~~l~~~l~~~g~~v~~S~-d-AG~ylCn~--------------------iyY~sL~~~~~~~~~~~FVHVP~~ 131 (154)
.++++.+.+++.|+.+..-. . .|.+++|. .+-+.+..++.-+.+.+-+|....
T Consensus 52 ~~~~~~~~l~~~gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~G~~ 126 (290)
T 3tva_A 52 HAQAFRAKCDAAGIQVTVIFGGFDGESYADIPTTARTVGLVPLETRASRVAEMKEISDFASWVGCPAIGLHIGFV 126 (290)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHHHHHHHHHHHHHHHHHTCSEEEECCCCC
T ss_pred HHHHHHHHHHHcCCEEEEEeeccCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 37888999999999865431 1 34444442 233444444455788888886533
No 16
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=24.65 E-value=55 Score=22.85 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=37.4
Q ss_pred EecCCCCcchhhHHHHHHHHHHhhcCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHhh
Q 031727 95 VISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVAST 153 (154)
Q Consensus 95 ~~S~dAG~ylCn~iyY~sL~~~~~~~~~~~FVHVP~~~~~~~e~~~~~v~~lI~~ia~~ 153 (154)
-...+++.|.++-.|+ ...+..+.+||||=.++-.+.|+-++++.+|-+.| +.
T Consensus 42 i~e~~~~~~~~~~~yl-----g~~rs~~~v~I~I~~~~gRt~EqK~~L~~~it~~l-~~ 94 (136)
T 3mlc_A 42 LTAHDPSDIIAEDAGL-----GFQRSPSVVIIHVFTQAGRTIETKQRVFAAITESL-AP 94 (136)
T ss_dssp EEEECGGGEEECCTTS-----SCCCCSCCEEEEEEEETTCCHHHHHHHHHHHHHHH-TT
T ss_pred EEEcCHHHcccccccc-----CcCCCCCeEEEEEEECCCCCHHHHHHHHHHHHHHH-HH
Confidence 3457888888887666 11234567899997766567777778888887777 54
No 17
>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1
Probab=21.94 E-value=21 Score=22.78 Aligned_cols=11 Identities=18% Similarity=0.625 Sum_probs=9.3
Q ss_pred CCCCcchhhHH
Q 031727 98 DDAGRFVCNYV 108 (154)
Q Consensus 98 ~dAG~ylCn~i 108 (154)
.|+|.|.|...
T Consensus 81 ~DsG~Y~C~~~ 91 (108)
T 1jhl_L 81 EDFAMYICQQH 91 (108)
T ss_dssp TCCSEEEEEEC
T ss_pred HHCEEEEEEEc
Confidence 69999999753
No 18
>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1
Probab=21.40 E-value=22 Score=22.81 Aligned_cols=11 Identities=18% Similarity=0.564 Sum_probs=9.4
Q ss_pred CCCCcchhhHH
Q 031727 98 DDAGRFVCNYV 108 (154)
Q Consensus 98 ~dAG~ylCn~i 108 (154)
.|+|.|.|...
T Consensus 81 ~DsG~Y~C~~~ 91 (108)
T 1qfw_M 81 EDFADYHCGQT 91 (108)
T ss_dssp TCCSEEEEEEC
T ss_pred hhCEEEEEEEc
Confidence 69999999764
No 19
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=21.21 E-value=2.5e+02 Score=20.56 Aligned_cols=73 Identities=11% Similarity=0.062 Sum_probs=35.9
Q ss_pred CcHHHHHHHHHHCCCceEecCCCCcchhh--H-------HHHHHHHHHhhcCCceEEEEcCCCCCCChHHHHHHHHHHHH
Q 031727 78 LSTEAILKFLKKKGFDVVISDDAGRFVCN--Y-------VYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFE 148 (154)
Q Consensus 78 l~~~~l~~~l~~~g~~v~~S~dAG~ylCn--~-------iyY~sL~~~~~~~~~~~FVHVP~~~~~~~e~~~~~v~~lI~ 148 (154)
.+++++.+.+++.|+.+.. ..+...++. - .+=+.+..++.-+.+.+-+|+-|....+.+...+.+.+.++
T Consensus 47 ~~~~~~~~~l~~~gl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~~~p~~~~~~~~~~~~~~~~l~ 125 (281)
T 3u0h_A 47 HGDAAVEAMFQRRGLVLAN-LGLPLNLYDSEPVFLRELSLLPDRARLCARLGARSVTAFLWPSMDEEPVRYISQLARRIR 125 (281)
T ss_dssp HCHHHHHHHHHTTTCEECC-EECCSCTTSCHHHHHHHHHTHHHHHHHHHHTTCCEEEEECCSEESSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCceEE-ecccccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecCCCCCcchhhHHHHHHHHH
Confidence 4577888888888987642 112211221 0 11223344444467766666544333333334444444444
Q ss_pred HHH
Q 031727 149 AVA 151 (154)
Q Consensus 149 ~ia 151 (154)
.++
T Consensus 126 ~l~ 128 (281)
T 3u0h_A 126 QVA 128 (281)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 20
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=20.31 E-value=24 Score=21.85 Aligned_cols=11 Identities=18% Similarity=0.341 Sum_probs=9.3
Q ss_pred cCCCCcchhhH
Q 031727 97 SDDAGRFVCNY 107 (154)
Q Consensus 97 S~dAG~ylCn~ 107 (154)
..|+|.|.|..
T Consensus 72 ~~D~G~Y~C~a 82 (95)
T 2k1m_A 72 PADQGSYAVIA 82 (95)
T ss_dssp TTCCSEEEEEE
T ss_pred cccCEEEEEEE
Confidence 36999999976
Done!