Query 031730
Match_columns 154
No_of_seqs 145 out of 1063
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 06:49:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031730.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031730hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us6_A Histidine-containing ph 100.0 9.9E-39 3.4E-43 235.4 19.1 153 1-153 1-153 (153)
2 1yvi_A Histidine-containing ph 100.0 2.8E-31 9.5E-36 194.6 18.0 144 3-146 3-147 (149)
3 2r25_A Phosphorelay intermedia 99.9 1.4E-23 4.7E-28 155.6 12.3 118 16-136 2-165 (167)
4 2a0b_A HPT domain; sensory tra 99.9 4.1E-21 1.4E-25 136.1 11.4 119 16-138 5-123 (125)
5 3myf_A Sensor protein; HPT, hi 99.8 2.3E-19 7.8E-24 126.7 13.4 114 18-136 1-115 (119)
6 3iqt_A Signal transduction his 99.8 1.9E-18 6.4E-23 122.7 12.2 110 20-134 12-122 (123)
7 1y6d_A Phosphorelay protein LU 99.7 3.9E-19 1.3E-23 125.6 0.7 105 27-133 14-118 (120)
8 2ooc_A Histidine phosphotransf 99.7 2.3E-16 7.8E-21 110.3 8.6 100 21-135 9-108 (113)
9 1sr2_A Putative sensor-like hi 99.7 2.4E-16 8.2E-21 110.7 8.2 88 37-126 28-115 (116)
10 1tqg_A Chemotaxis protein CHEA 99.5 6.7E-14 2.3E-18 95.9 9.2 89 42-132 3-102 (105)
11 2ld6_A Chemotaxis protein CHEA 99.4 7.4E-13 2.5E-17 95.4 7.1 89 43-133 3-102 (139)
12 1i5n_A Chemotaxis protein CHEA 99.3 2.4E-12 8.3E-17 93.4 7.7 86 43-130 6-102 (146)
13 2lch_A Protein OR38; structura 99.3 3.9E-12 1.3E-16 88.3 8.1 89 43-131 5-102 (113)
14 3kyj_A CHEA3, putative histidi 99.0 2.1E-09 7.1E-14 77.8 9.0 92 42-133 9-109 (144)
15 2lp4_A Chemotaxis protein CHEA 98.7 2.9E-08 1E-12 76.5 7.6 88 43-130 6-102 (225)
16 3uo3_A J-type CO-chaperone JAC 88.6 2.5 8.7E-05 30.9 8.1 38 42-81 123-160 (181)
17 3zsu_A TLL2057 protein, cyanoq 86.2 6.6 0.00023 27.3 9.4 76 51-135 31-124 (130)
18 3bvo_A CO-chaperone protein HS 85.5 3.6 0.00012 30.7 7.6 41 40-82 151-191 (207)
19 3ls0_A SLL1638 protein, PSBQ; 85.5 7.4 0.00025 27.2 10.6 77 50-135 32-127 (133)
20 1vyk_A Oxygen-evolving enhance 80.0 14 0.00046 26.3 10.5 77 51-136 53-147 (149)
21 3hho_A CO-chaperone protein HS 79.6 8.5 0.00029 27.7 7.4 51 58-118 103-154 (174)
22 1fpo_A HSC20, chaperone protei 75.9 12 0.0004 26.9 7.2 26 94-119 126-151 (171)
23 2di0_A Activating signal coint 67.9 5.6 0.00019 24.8 3.3 44 19-62 9-52 (71)
24 1gp8_A Protein (scaffolding pr 67.8 13 0.00044 20.3 4.5 24 58-83 15-38 (40)
25 3fkr_A L-2-keto-3-deoxyarabona 47.5 18 0.00061 28.3 3.9 72 81-153 209-286 (309)
26 3dz1_A Dihydrodipicolinate syn 47.2 23 0.00079 27.7 4.5 70 83-153 212-288 (313)
27 2cw9_A Translocase of inner mi 39.0 36 0.0012 24.7 4.2 73 15-106 30-103 (194)
28 2p1h_A APAF-1, apoptotic prote 38.6 46 0.0016 20.8 4.2 28 39-66 52-79 (94)
29 3zbh_A ESXA; unknown function, 37.6 70 0.0024 19.6 8.3 20 70-89 10-29 (99)
30 2wkj_A N-acetylneuraminate lya 36.5 99 0.0034 23.8 6.6 70 83-153 208-285 (303)
31 4ioe_A Secreted protein ESXB; 34.9 77 0.0026 19.3 6.4 34 69-103 9-42 (93)
32 1fyh_A Interferon-gamma; cytok 34.1 1.6E+02 0.0054 22.6 7.2 61 44-104 77-137 (258)
33 3gwk_C SAG1039, putative uncha 33.9 84 0.0029 19.4 8.8 69 70-139 9-80 (98)
34 1txp_A HnRNP C, heterogeneous 33.8 48 0.0016 16.6 2.9 24 117-140 2-25 (28)
35 2vs0_A Virulence factor ESXA; 31.6 89 0.003 19.0 8.9 71 69-140 6-79 (97)
36 4etr_A Putative uncharacterize 30.6 1.3E+02 0.0045 20.6 6.3 38 110-147 40-77 (153)
37 2f4m_B UV excision repair prot 30.3 88 0.003 18.5 5.0 37 25-62 11-47 (61)
38 3h5d_A DHDPS, dihydrodipicolin 27.6 70 0.0024 24.9 4.3 71 82-153 203-280 (311)
39 2r91_A 2-keto-3-deoxy-(6-phosp 27.4 1.1E+02 0.0039 23.2 5.5 70 83-153 189-266 (286)
40 2p06_A Hypothetical protein AF 27.4 1.2E+02 0.004 19.4 4.6 22 55-78 67-88 (114)
41 3p9y_A CG14216, LD40846P; phos 25.9 65 0.0022 23.9 3.5 33 86-124 152-184 (198)
42 1w3i_A EDA, 2-keto-3-deoxy glu 25.9 1.2E+02 0.0042 23.1 5.4 70 83-153 190-267 (293)
43 3do9_A UPF0302 protein BA_1542 25.2 1.9E+02 0.0065 21.0 6.0 31 54-86 152-182 (188)
44 3m50_P N.plumbaginifolia H+-tr 25.2 16 0.00054 19.0 0.1 9 76-84 2-10 (31)
45 1jog_A Hypothetical protein HI 25.0 1.2E+02 0.004 20.9 4.7 52 88-139 6-70 (146)
46 3qk9_A Mitochondrial import in 25.0 12 0.00042 28.1 -0.5 38 38-80 72-110 (222)
47 3na8_A Putative dihydrodipicol 24.8 1E+02 0.0035 24.0 4.8 70 83-153 222-298 (315)
48 1xky_A Dihydrodipicolinate syn 24.2 1.4E+02 0.0047 23.0 5.5 71 82-153 208-285 (301)
49 3eb2_A Putative dihydrodipicol 23.6 75 0.0026 24.5 3.8 70 83-153 201-277 (300)
50 4h3k_B RNA polymerase II subun 23.4 95 0.0033 23.2 4.1 18 86-103 168-185 (214)
51 3ygs_P Procaspase 9; apoptosis 23.4 93 0.0032 19.7 3.7 54 13-66 26-80 (97)
52 1f6k_A N-acetylneuraminate lya 22.9 2.1E+02 0.007 21.8 6.2 70 83-153 200-277 (293)
53 3l21_A DHDPS, dihydrodipicolin 22.9 2.3E+02 0.0078 21.8 6.5 62 91-153 220-286 (304)
54 3d0c_A Dihydrodipicolinate syn 21.9 1.4E+02 0.0047 23.2 5.0 70 83-153 207-286 (314)
55 3qze_A DHDPS, dihydrodipicolin 21.6 86 0.0029 24.4 3.8 60 93-153 232-296 (314)
56 2r6a_C DNAG primase, helicase 20.9 1.8E+02 0.0061 18.8 5.8 44 70-116 87-130 (143)
57 2wx3_A MRNA-decapping enzyme 1 20.7 1E+02 0.0034 17.7 2.9 23 37-59 26-48 (51)
No 1
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=100.00 E-value=9.9e-39 Score=235.42 Aligned_cols=153 Identities=77% Similarity=1.181 Sum_probs=144.8
Q ss_pred CchhHHHHHHHHHHHhhhhhhchHHHHHHHHhhhccCCHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 031730 1 MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQ 80 (154)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ild~~~~~L~~L~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~ 80 (154)
|++++|++++.+||++++++|+||++|++|.+|.++++++|+.+++..|++++++.+..|..+++.++.|+..+.+.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~ 80 (153)
T 3us6_A 1 MEVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQ 80 (153)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999998765589999999999
Q ss_pred hhhhhhhhcHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCCCccccC
Q 031730 81 LKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLVKNKLETLFRMEQQIVAAGGSIPMMELS 153 (154)
Q Consensus 81 LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~ 153 (154)
|||||+|+||.+|+.+|..||.+++.++.+.+...+++|+.+|.+++.+|++|+..++|+.++||++|+|+++
T Consensus 81 LKGss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~v~~~L~~~~~le~q~~~~~~~~~~~~~~ 153 (153)
T 3us6_A 81 FKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKLETLLRLEQQIVAAGGSIPMMELN 153 (153)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC----
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=99.98 E-value=2.8e-31 Score=194.62 Aligned_cols=144 Identities=42% Similarity=0.800 Sum_probs=132.2
Q ss_pred hhHHHHHHHHHHHhhhhhhchHHHHHHHHhhhccCC-HHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 031730 3 VGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESN-PDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQL 81 (154)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ild~~~~~L~~L~~~~~-~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~L 81 (154)
+.+|++++..+++++++.|++|..|++|.+|.++++ ++|+.+++..|++++++.+..|..++..++.|+..+...+|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~L 82 (149)
T 1yvi_A 3 AAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQL 82 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 578999999999999999999988999999988777 9999999999999999999999999987644799999999999
Q ss_pred hhhhhhhcHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCC
Q 031730 82 KGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLVKNKLETLFRMEQQIVAAGGS 146 (154)
Q Consensus 82 KGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~l~~~~~~~~~~~~ 146 (154)
||||+|+||.+|+.+|..||..++.++.+.+...+..++.+|.+++.+|++|++.++|++|.||+
T Consensus 83 KGssa~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~~~~~L~~~~~~e~q~~~~~~~ 147 (149)
T 1yvi_A 83 KGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQQIQAYDPK 147 (149)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HhHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999975
No 3
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=99.90 E-value=1.4e-23 Score=155.63 Aligned_cols=118 Identities=21% Similarity=0.399 Sum_probs=108.4
Q ss_pred hhhhhhchHH-HHHHHHhhhccCCHHHHHHHHHHHHHhHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhhhhhhhhcHHHH
Q 031730 16 SLFMEGVLDN-QFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALD-QPTIDFKMVDSHVHQLKGSSSSIGAERI 93 (154)
Q Consensus 16 ~~~~~~ild~-~~~~L~~L~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~-~~~~D~~~l~~~aH~LKGss~~lGa~~L 93 (154)
++.+.|++|. +|++|++|.+++ |+|+.++|..|++++++.+..|+.|++ .+ |+..+..++|+|||||+||||.+|
T Consensus 2 ~~~~~~~LD~~~f~qL~el~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~~~~--D~~~L~~~aH~LKGSSAnLGA~rV 78 (167)
T 2r25_A 2 STIPSEIINWTILNEIISMDDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLDGEK--NLTELDNLGHFLKGSSAALGLQRI 78 (167)
T ss_dssp CCCCSCSSCHHHHHHHHHTTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCcCCcCHHHHHHHHHhcccC-chHHHHHHHHHHHhHHHHHHHHHHHHhccc--CHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4567899995 799999998776 999999999999999999999999999 88 999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC------------Hh--------------------------------hHHHHHHHHHHHHHHHHHH
Q 031730 94 KNACVAFRNFCEEQN------------IE--------------------------------GCMSCLQQVKQEYCLVKNK 129 (154)
Q Consensus 94 ~~~~~~lE~~~~~~~------------~~--------------------------------~~~~~~~~l~~~~~~l~~~ 129 (154)
+.+|.+||..|+.++ .. .+...+++++.+|..++.+
T Consensus 79 ~~~C~~le~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~L~~~k~e~~~~~~~ 158 (167)
T 2r25_A 79 AWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARIE 158 (167)
T ss_dssp HHHHHHHHHHHTTCCCCCCCHHHHHTTCSSGGGGSSSCTTTTCCCCCCCSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccccccccccccccccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888 32 5678899999999999999
Q ss_pred HHHHHHh
Q 031730 130 LETLFRM 136 (154)
Q Consensus 130 L~~~l~~ 136 (154)
|++|+..
T Consensus 159 L~~~~~~ 165 (167)
T 2r25_A 159 LSKYYNT 165 (167)
T ss_dssp HHHHTTS
T ss_pred HHHHHcc
Confidence 9999753
No 4
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=99.86 E-value=4.1e-21 Score=136.15 Aligned_cols=119 Identities=16% Similarity=0.178 Sum_probs=104.8
Q ss_pred hhhhhhchHHHHHHHHhhhccCCHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhcHHHHHH
Q 031730 16 SLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKN 95 (154)
Q Consensus 16 ~~~~~~ild~~~~~L~~L~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~ 95 (154)
++-+.+++|. ..|.+|.+..|++++.+++..|++++++.+..|..++..+ |+..+.+.+|+|||+|+++|+.+|+.
T Consensus 5 ~~~~~~~lD~--~~l~~l~~~~g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~--d~~~~~~~aH~LKGsa~~lG~~~l~~ 80 (125)
T 2a0b_A 5 NSKSEALLDI--PMLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHLQQ 80 (125)
T ss_dssp -CHHHHHSCH--HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccccccCCH--HHHHHHHHHhCHHHHHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3445566773 3455555556789999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031730 96 ACVAFRNFCEEQNIEGCMSCLQQVKQEYCLVKNKLETLFRMEQ 138 (154)
Q Consensus 96 ~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~l~~~~ 138 (154)
+|..+|..++.++...+...+..|...|.++...|+.|+...+
T Consensus 81 ~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~~ 123 (125)
T 2a0b_A 81 LGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAKAT 123 (125)
T ss_dssp HHHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999888788888999999999999999999998754
No 5
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=99.82 E-value=2.3e-19 Score=126.68 Aligned_cols=114 Identities=16% Similarity=0.239 Sum_probs=100.5
Q ss_pred hhhhchHHHHHHHHhhhccCCHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhcHHHHHHHH
Q 031730 18 FMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNAC 97 (154)
Q Consensus 18 ~~~~ild~~~~~L~~L~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~ 97 (154)
+|-.++| |+...++ -+|+++++.+|+..|+++.++++..|+.++..+ |+..+.+.+|+|||+|+++|+.+|..+|
T Consensus 1 ~~~~~~D--~~~~l~~-~~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~~ 75 (119)
T 3myf_A 1 FDLHTLN--WDLCLTQ-ANHKSNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLSTIHKLHGASCYCGVPTTQRLC 75 (119)
T ss_dssp -CTTTCC--HHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred CCccccC--HHHHHHH-hCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 3556677 3344443 267899999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHhcCH-hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031730 98 VAFRNFCEEQNI-EGCMSCLQQVKQEYCLVKNKLETLFRM 136 (154)
Q Consensus 98 ~~lE~~~~~~~~-~~~~~~~~~l~~~~~~l~~~L~~~l~~ 136 (154)
..||.+++.+.. +.+...+..+..++..+..+++.|+.+
T Consensus 76 ~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~ 115 (119)
T 3myf_A 76 QEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQ 115 (119)
T ss_dssp HHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998764 577788999999999999999999885
No 6
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=99.79 E-value=1.9e-18 Score=122.70 Aligned_cols=110 Identities=16% Similarity=0.222 Sum_probs=96.4
Q ss_pred hhchHHHHHHHHhhhccCCHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhcHHHHHHHHHH
Q 031730 20 EGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVA 99 (154)
Q Consensus 20 ~~ild~~~~~L~~L~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~ 99 (154)
.+++| |+.+.++ -+|+++++.+|+.+|+++.++++..|+.++..+ |++.+.+.+|+|||+|+++|+.+|..+|..
T Consensus 12 ~~~~D--~~~~l~~-a~g~~~La~elL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~ 86 (123)
T 3iqt_A 12 NATLD--WQLALRQ-AAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNLCQL 86 (123)
T ss_dssp GGTCC--HHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred CCccC--HHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 34556 3444444 267899999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHhcCHh-hHHHHHHHHHHHHHHHHHHHHHHH
Q 031730 100 FRNFCEEQNIE-GCMSCLQQVKQEYCLVKNKLETLF 134 (154)
Q Consensus 100 lE~~~~~~~~~-~~~~~~~~l~~~~~~l~~~L~~~l 134 (154)
||..++.++.. .+...+..+..++..+..+.+.|+
T Consensus 87 LE~~~r~g~~~~~l~~~l~~L~del~~v~~~~~~~~ 122 (123)
T 3iqt_A 87 IEQQLRSGTKEEDLEPELLELLDEMDNVAREASKIL 122 (123)
T ss_dssp HHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988654 677888999999999998888774
No 7
>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5
Probab=99.72 E-value=3.9e-19 Score=125.60 Aligned_cols=105 Identities=15% Similarity=0.266 Sum_probs=87.0
Q ss_pred HHHHHhhhccCCHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHHh
Q 031730 27 FLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEE 106 (154)
Q Consensus 27 ~~~L~~L~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~ 106 (154)
++++.+|.+..+++++.+++..|++++++.+..|..+.+.+ |...+.+.+|+|||||+++|+.+|+.+|..+|..+++
T Consensus 14 ~~~l~~L~~~~g~~~~~e~~~~F~~e~~e~l~~L~~a~~~~--~~~~i~r~aH~LKGsAa~~Ga~~l~~~~~~lE~~~r~ 91 (120)
T 1y6d_A 14 QQKIEELSAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERAIAIDKKAKA 91 (120)
T ss_dssp TTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcccccc--hHHHHHHHHHHHhhhHHHhCHHHHHHHHHHHHHHHhC
Confidence 56777888777899999999999999999999999988887 8889999999999999999999999999999999998
Q ss_pred cCHhhHHHHHHHHHHHHHHHHHHHHHH
Q 031730 107 QNIEGCMSCLQQVKQEYCLVKNKLETL 133 (154)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~l~~~L~~~ 133 (154)
++...+......+...+.++...++.+
T Consensus 92 g~~~~~~~~~~~l~~~l~~~~d~l~~~ 118 (120)
T 1y6d_A 92 NQLQEQGMETSEMLALLHITRDAYRSW 118 (120)
T ss_dssp HHHCTTTSTTTTTTHHHHHHHHHHHHH
T ss_pred CChhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 876643334445555555555555544
No 8
>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6
Probab=99.67 E-value=2.3e-16 Score=110.29 Aligned_cols=100 Identities=19% Similarity=0.258 Sum_probs=83.6
Q ss_pred hchHHHHHHHHhhhccCCHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhcHHHHHHHHHHH
Q 031730 21 GVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAF 100 (154)
Q Consensus 21 ~ild~~~~~L~~L~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~l 100 (154)
+.+| ++.|..+ ..|+++++.+++..|++++++.+..|..+ .. |+ .+.+|+|||+|+++||.+|..+|..+
T Consensus 9 ~~iD--~~~L~~~-~~gd~~~~~elL~~F~~~~~~~l~~L~~a--~~--~~---~~~aH~LKGsA~~iGA~~l~~~c~~l 78 (113)
T 2ooc_A 9 GAVD--FAYLEGF-AAGDFAVVDEVLALFREQAALWAPMLDPT--HP--GW---KDAVHTVKGAARGVGAFNLGEVCERC 78 (113)
T ss_dssp CCSC--HHHHHHH-TTTCHHHHHHHHHHHHHHHHHHGGGCSTT--ST--TH---HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCcC--HHHHHhH-hCCCHHHHHHHHHHHHHHhHHHHHHHHHh--hH--HH---HHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 4455 2345444 35789999999999999999999999888 44 65 89999999999999999999999999
Q ss_pred HHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031730 101 RNFCEEQNIEGCMSCLQQVKQEYCLVKNKLETLFR 135 (154)
Q Consensus 101 E~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~l~ 135 (154)
|..++. ....+..|...+.++...|...+.
T Consensus 79 E~~~~~-----~~~~~~~L~~a~~~~~~~l~~~~~ 108 (113)
T 2ooc_A 79 EAGQES-----LEGVRTALDAALLDIAAYAHEQAL 108 (113)
T ss_dssp HTTSSC-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998865 345688899999999988887764
No 9
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=99.66 E-value=2.4e-16 Score=110.71 Aligned_cols=88 Identities=15% Similarity=0.226 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHHhcCHhhHHHHH
Q 031730 37 SNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCL 116 (154)
Q Consensus 37 ~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~ 116 (154)
+.+..-..++..|+++.++++..|..++..+ |+..+++.+|+|||+++++|+..|+.+|..+|..++.++...+...+
T Consensus 28 ~k~~~~~d~l~~fl~s~~~Dl~~L~~A~~~~--D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~~~l~~~i 105 (116)
T 1sr2_A 28 NAQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYI 105 (116)
T ss_dssp HHHHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cchhchHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3446677889999999999999999999999 99999999999999999999999999999999999999887777777
Q ss_pred HHHHHHHHHH
Q 031730 117 QQVKQEYCLV 126 (154)
Q Consensus 117 ~~l~~~~~~l 126 (154)
..|...+.++
T Consensus 106 ~~L~~~l~~L 115 (116)
T 1sr2_A 106 SDIDSYVKSL 115 (116)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777666543
No 10
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=99.52 E-value=6.7e-14 Score=95.94 Aligned_cols=89 Identities=16% Similarity=0.283 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhc--------CCCCCHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHH---HhcCHh
Q 031730 42 VAEVVSLFFADSERLLNDLTRALD--------QPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFC---EEQNIE 110 (154)
Q Consensus 42 ~~~ll~~Fl~~~~~~l~~L~~a~~--------~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~---~~~~~~ 110 (154)
+.+++..|++++++.+..|..++. .. ++..+.+.+|+|||+|+++|+..+..+|..+|... +.+...
T Consensus 3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~--~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~~ 80 (105)
T 1tqg_A 3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIK 80 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCCC
Confidence 468999999999999999999984 34 67899999999999999999999999999999976 556555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 031730 111 GCMSCLQQVKQEYCLVKNKLET 132 (154)
Q Consensus 111 ~~~~~~~~l~~~~~~l~~~L~~ 132 (154)
.....++.+...+..+...+..
T Consensus 81 ~~~~~~~~l~~~~d~l~~~l~~ 102 (105)
T 1tqg_A 81 ITSDLLDKIFAGVDMITRMVDK 102 (105)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 5556777777777777766643
No 11
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=99.38 E-value=7.4e-13 Score=95.41 Aligned_cols=89 Identities=17% Similarity=0.336 Sum_probs=72.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHh--------cCCCCCHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHH---HhcCHhh
Q 031730 43 AEVVSLFFADSERLLNDLTRAL--------DQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFC---EEQNIEG 111 (154)
Q Consensus 43 ~~ll~~Fl~~~~~~l~~L~~a~--------~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~---~~~~~~~ 111 (154)
.+++..|++++++.+..|..++ +.. ++..+.+.+|+|||+|+++|+..+..+|..+|... +.+....
T Consensus 3 ~ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~--~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~~~ 80 (139)
T 2ld6_A 3 EEYLGVFVDETKEYLQNLNDTLLELEKNPEDME--LINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKI 80 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSS--HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4789999999999999999998 345 78999999999999999999999999999999866 5555443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031730 112 CMSCLQQVKQEYCLVKNKLETL 133 (154)
Q Consensus 112 ~~~~~~~l~~~~~~l~~~L~~~ 133 (154)
....++.+...+..+...+...
T Consensus 81 ~~~l~~~l~~~~D~l~~~l~~~ 102 (139)
T 2ld6_A 81 TSDLLDKIFAGVDMITRMVDKI 102 (139)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666776666666666544
No 12
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=99.34 E-value=2.4e-12 Score=93.45 Aligned_cols=86 Identities=15% Similarity=0.343 Sum_probs=65.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHh--------cCCCCCHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHH---HHhcCHhh
Q 031730 43 AEVVSLFFADSERLLNDLTRAL--------DQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNF---CEEQNIEG 111 (154)
Q Consensus 43 ~~ll~~Fl~~~~~~l~~L~~a~--------~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~---~~~~~~~~ 111 (154)
.+++..|++++++.+..|..++ +.. ++..+.+.+|+|||+|+++|+..+.++|..+|.. .+.+....
T Consensus 6 ~ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~--~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~~ 83 (146)
T 1i5n_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAE--QLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQL 83 (146)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHH--HHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4789999999999999999999 223 5689999999999999999999999999999987 45554333
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031730 112 CMSCLQQVKQEYCLVKNKL 130 (154)
Q Consensus 112 ~~~~~~~l~~~~~~l~~~L 130 (154)
....++.+...+..+...+
T Consensus 84 ~~~l~~~l~~~~D~l~~~l 102 (146)
T 1i5n_A 84 NTDIINLFLETKDIMQEQL 102 (146)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 13
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=99.33 E-value=3.9e-12 Score=88.32 Aligned_cols=89 Identities=13% Similarity=0.243 Sum_probs=67.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhc-----CCC-CCHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHH---HhcCHhhHH
Q 031730 43 AEVVSLFFADSERLLNDLTRALD-----QPT-IDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFC---EEQNIEGCM 113 (154)
Q Consensus 43 ~~ll~~Fl~~~~~~l~~L~~a~~-----~~~-~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~---~~~~~~~~~ 113 (154)
.+++..|++++++.+..|..++. ..+ .++..+.+.+|+|||+|+++|+..+.++|..+|... +.+......
T Consensus 5 ~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~~~~~~ 84 (113)
T 2lch_A 5 QEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSEIKITS 84 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTTTCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 57899999999999999999882 220 045679999999999999999999999999999754 455444344
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 031730 114 SCLQQVKQEYCLVKNKLE 131 (154)
Q Consensus 114 ~~~~~l~~~~~~l~~~L~ 131 (154)
..++.+...+..+...+.
T Consensus 85 ~l~~~l~~~~d~l~~~l~ 102 (113)
T 2lch_A 85 DLIDKVKKKLDMVTRELD 102 (113)
T ss_dssp HHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666665555555443
No 14
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=98.99 E-value=2.1e-09 Score=77.82 Aligned_cols=92 Identities=14% Similarity=0.159 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhc---CCCCC---HHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHH---hcCHhhH
Q 031730 42 VAEVVSLFFADSERLLNDLTRALD---QPTID---FKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCE---EQNIEGC 112 (154)
Q Consensus 42 ~~~ll~~Fl~~~~~~l~~L~~a~~---~~~~D---~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~---~~~~~~~ 112 (154)
..+++..|++++.+.+..|...+. .++.| ...+.+.+|+|||+|+++|+..+.++|..+|.... .+...-.
T Consensus 9 ~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~ 88 (144)
T 3kyj_A 9 MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMD 88 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 468899999999999999998873 21113 46799999999999999999999999999998663 4433323
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031730 113 MSCLQQVKQEYCLVKNKLETL 133 (154)
Q Consensus 113 ~~~~~~l~~~~~~l~~~L~~~ 133 (154)
...++.+...+..+...+...
T Consensus 89 ~~l~dlll~~~D~l~~lv~~~ 109 (144)
T 3kyj_A 89 GEIVEILLFASDTLRAMLEET 109 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566665555555554443
No 15
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=98.72 E-value=2.9e-08 Score=76.46 Aligned_cols=88 Identities=15% Similarity=0.314 Sum_probs=63.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhc---CCCCC---HHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHH---hcCHhhHH
Q 031730 43 AEVVSLFFADSERLLNDLTRALD---QPTID---FKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCE---EQNIEGCM 113 (154)
Q Consensus 43 ~~ll~~Fl~~~~~~l~~L~~a~~---~~~~D---~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~---~~~~~~~~ 113 (154)
.++++.|++++.+.+..|...+. .+..| ...+.+.+|+|||+|+.+|+..+.++|..+|.... .+...-..
T Consensus 6 ~~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~~~r~g~~~~~~ 85 (225)
T 2lp4_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT 85 (225)
T ss_dssp GGTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 46789999999999999998872 22113 46789999999999999999999999999998774 33322223
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031730 114 SCLQQVKQEYCLVKNKL 130 (154)
Q Consensus 114 ~~~~~l~~~~~~l~~~L 130 (154)
..++.+...+..+...+
T Consensus 86 ~~~~ll~~~~D~l~~~l 102 (225)
T 2lp4_A 86 DIINLFLETKDIMQEQL 102 (225)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 16
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=88.58 E-value=2.5 Score=30.88 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 031730 42 VAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQL 81 (154)
Q Consensus 42 ~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~L 81 (154)
+..+....-.........|..++..+ ||..++..+.+|
T Consensus 123 l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~~~kL 160 (181)
T 3uo3_A 123 VKLLEKQNKERIQDIEAQLGQCYNDK--DYAAAVKLTVEL 160 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHH
Confidence 33333333333444444444444444 444444444443
No 17
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=86.23 E-value=6.6 Score=27.30 Aligned_cols=76 Identities=5% Similarity=0.132 Sum_probs=48.0
Q ss_pred HhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhh--------h----------cHHHHHHHHHHHHHHHHhcCHhhH
Q 031730 51 ADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSS--------I----------GAERIKNACVAFRNFCEEQNIEGC 112 (154)
Q Consensus 51 ~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~--------l----------Ga~~L~~~~~~lE~~~~~~~~~~~ 112 (154)
.++.+.+.+|...++.+ ||..++...|.-=|..+. + =+..|.+-...|-.+++..+..
T Consensus 31 ~~~r~Rl~eL~~lI~~~--~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n~~-- 106 (130)
T 3zsu_A 31 EKNAERFADLEVSVAKG--DWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALTDDFLKIDQGADLDSVT-- 106 (130)
T ss_dssp HHHHTTHHHHHHHHHTT--CHHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHHHHHHHHHHHHHTTCHH--
T ss_pred HHHHHHHHHHHHHHhhc--chHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHhcCHH--
Confidence 45567889999999999 999999999975554321 1 0123334444455555555533
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031730 113 MSCLQQVKQEYCLVKNKLETLFR 135 (154)
Q Consensus 113 ~~~~~~l~~~~~~l~~~L~~~l~ 135 (154)
.....|+++...+.+|+.
T Consensus 107 -----~a~k~Y~~a~adfdafl~ 124 (130)
T 3zsu_A 107 -----VAQEGFREAEADFKAYLN 124 (130)
T ss_dssp -----HHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHH
Confidence 344556666666666654
No 18
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=85.55 E-value=3.6 Score=30.68 Aligned_cols=41 Identities=17% Similarity=0.369 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 031730 40 DFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLK 82 (154)
Q Consensus 40 ~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK 82 (154)
+-+.++-..+-....+.+..|..++..+ |+..+...+.+||
T Consensus 151 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~--d~~~A~~~v~kL~ 191 (207)
T 3bvo_A 151 AAMKEIESIVKAKQKEFTDNVSSAFEQD--DFEEAKEILTKMR 191 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 3344444444444444455566666666 6666666665554
No 19
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=85.46 E-value=7.4 Score=27.16 Aligned_cols=77 Identities=13% Similarity=0.165 Sum_probs=47.1
Q ss_pred HHhHHHHHHH-HHHHhcCCCCCHHHHHHHHHHhhhhhh--------hh----------cHHHHHHHHHHHHHHHHhcCHh
Q 031730 50 FADSERLLND-LTRALDQPTIDFKMVDSHVHQLKGSSS--------SI----------GAERIKNACVAFRNFCEEQNIE 110 (154)
Q Consensus 50 l~~~~~~l~~-L~~a~~~~~~D~~~l~~~aH~LKGss~--------~l----------Ga~~L~~~~~~lE~~~~~~~~~ 110 (154)
+.+..+.+.+ |...++.+ ||..++...|.-=|..+ ++ =+..|.+-...|-.+++..+.
T Consensus 32 i~~ar~Rl~e~L~~lI~~~--~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n~- 108 (133)
T 3ls0_A 32 IAVARDGMEKRLQGLIADQ--NWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLERLDAAAKDRNG- 108 (133)
T ss_dssp HHHHHHHHHHTHHHHHHTT--CHHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-
T ss_pred HHHHHHHhHHHHHHHhhhc--chHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHhcCH-
Confidence 3456678888 99999999 99999999997555432 21 011223333334444444443
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 031730 111 GCMSCLQQVKQEYCLVKNKLETLFR 135 (154)
Q Consensus 111 ~~~~~~~~l~~~~~~l~~~L~~~l~ 135 (154)
......|+++...+.+|+.
T Consensus 109 ------~~a~k~Y~~a~adfdafl~ 127 (133)
T 3ls0_A 109 ------SQAKIQYQEALADFDSFLN 127 (133)
T ss_dssp ------HHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHH
Confidence 3445566666666777654
No 20
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=80.03 E-value=14 Score=26.27 Aligned_cols=77 Identities=5% Similarity=0.060 Sum_probs=46.8
Q ss_pred HhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh--------hhhhc----------HHHHHHHHHHHHHHHHhcCHhhH
Q 031730 51 ADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGS--------SSSIG----------AERIKNACVAFRNFCEEQNIEGC 112 (154)
Q Consensus 51 ~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGs--------s~~lG----------a~~L~~~~~~lE~~~~~~~~~~~ 112 (154)
.++.+.+..++..++.. +|..++...|.=-|. ..++. +..|++-...|..+++..+...+
T Consensus 53 k~~a~~i~~vk~lI~k~--~W~~vrn~LR~~~~~Lr~Dl~~li~slp~~~kk~l~~La~~Lf~~le~LD~AAr~kd~~~a 130 (149)
T 1vyk_A 53 KVSASEILNVKQFIDRK--AWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEA 130 (149)
T ss_dssp HHHHHHHHTTHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhhhc--cHHHHHHHHHHhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 44556667788888888 999988888753221 11111 24566666667777777765544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 031730 113 MSCLQQVKQEYCLVKNKLETLFRM 136 (154)
Q Consensus 113 ~~~~~~l~~~~~~l~~~L~~~l~~ 136 (154)
. ..|..+...|+.+++.
T Consensus 131 ~-------~~Y~~t~~~ld~vl~~ 147 (149)
T 1vyk_A 131 E-------KYYGQTVSNINEVLAK 147 (149)
T ss_dssp H-------HHHHHHHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHHHHHHH
Confidence 4 4555555555555543
No 21
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=79.63 E-value=8.5 Score=27.71 Aligned_cols=51 Identities=4% Similarity=0.020 Sum_probs=24.8
Q ss_pred HHHHHHhcCCCCC-HHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHHhcCHhhHHHHHHH
Q 031730 58 NDLTRALDQPTID-FKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQ 118 (154)
Q Consensus 58 ~~L~~a~~~~~~D-~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~ 118 (154)
+.|..+-... | ...+..+...++. .+..+...|+.+...++++.+...+..
T Consensus 103 E~le~~~~~~--d~~~~l~~l~~~~~~--------~~~~~~~~l~~~~~~~d~~~A~~~~~k 154 (174)
T 3hho_A 103 EELESVTACA--DPEAALVAFDTKVTA--------MQRHYLAQLQGQLAQSEWLAAADQIRK 154 (174)
T ss_dssp HHHHHHTSSS--SHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhcc--chHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4444444444 5 3444444444432 334555555555555666555444333
No 22
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=75.94 E-value=12 Score=26.93 Aligned_cols=26 Identities=0% Similarity=0.042 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhcCHhhHHHHHHHH
Q 031730 94 KNACVAFRNFCEEQNIEGCMSCLQQV 119 (154)
Q Consensus 94 ~~~~~~lE~~~~~~~~~~~~~~~~~l 119 (154)
..+...++.+...++++.+...+..+
T Consensus 126 ~~~~~~l~~~~~~~~~~~A~~~~~kl 151 (171)
T 1fpo_A 126 DTRHQLMVEQLDNETWDAAADTCRKL 151 (171)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHH
Confidence 34444444444444555444444333
No 23
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=67.92 E-value=5.6 Score=24.77 Aligned_cols=44 Identities=18% Similarity=0.347 Sum_probs=37.1
Q ss_pred hhhchHHHHHHHHhhhccCCHHHHHHHHHHHHHhHHHHHHHHHH
Q 031730 19 MEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTR 62 (154)
Q Consensus 19 ~~~ild~~~~~L~~L~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~ 62 (154)
+...++..++++..|..+-+..|+..+++.|-.+.+..++.|-+
T Consensus 9 ~~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 9 CGVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SSHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 45566677889999998999999999999999999888887754
No 24
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=67.76 E-value=13 Score=20.32 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.6
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhhh
Q 031730 58 NDLTRALDQPTIDFKMVDSHVHQLKG 83 (154)
Q Consensus 58 ~~L~~a~~~~~~D~~~l~~~aH~LKG 83 (154)
.+|.-|...+ |++.+..+-|.||+
T Consensus 15 QqiyvA~seG--d~etv~~Le~QL~~ 38 (40)
T 1gp8_A 15 KQMDAAASKG--DVETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHHHTTS--CHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC--CHHHHHHHHHHHHh
Confidence 4566778889 99999999999987
No 25
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=47.47 E-value=18 Score=28.32 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=44.2
Q ss_pred hhhhhhhhcHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHH-----HHHHHHHhhhhHHhhc-CCCCccccC
Q 031730 81 LKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLVKN-----KLETLFRMEQQIVAAG-GSIPMMELS 153 (154)
Q Consensus 81 LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~l~~-----~L~~~l~~~~~~~~~~-~~~~~~~~~ 153 (154)
.-|+.|.+++.-+-+.|.++=+++++++.+.+..+...+...+..... .++..+. .++..+.| ++.|.+.++
T Consensus 209 ~~G~~G~i~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~-~~G~~~~g~~R~Pl~~l~ 286 (309)
T 3fkr_A 209 HAGATGAMTGGGFPDGIRPILEAWREGRHDDAYARYQAWLPLINHENRQSGILTAKALMR-EGGVIASERPRHPMPELH 286 (309)
T ss_dssp HTTCCEECCCSSCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTGGGHHHHHHH-HTTSSSCCCCCTTSCCCC
T ss_pred HCCCcEEEEhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH-hCCCCCCCCcCCCCCCCC
Confidence 346666666666788889998999999988876665555544433221 1333333 34443444 666887664
No 26
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=47.22 E-value=23 Score=27.68 Aligned_cols=70 Identities=6% Similarity=0.063 Sum_probs=42.6
Q ss_pred hhhhhhcHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHH------HHHHHHHHHhhhhHHhhc-CCCCccccC
Q 031730 83 GSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLV------KNKLETLFRMEQQIVAAG-GSIPMMELS 153 (154)
Q Consensus 83 Gss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~l------~~~L~~~l~~~~~~~~~~-~~~~~~~~~ 153 (154)
|+.|.+++...-+.|.++=.++++++.+.+..+...+...+... -..++..+. .++..+.| ++.|...++
T Consensus 212 G~~G~i~~~~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~~K~al~-~~G~~~~g~~R~Pl~~l~ 288 (313)
T 3dz1_A 212 GADGAMTGYCFPDMLVDVVKLSKAGQRDLAHNLFDAHLPLIRYEHQQGVGLSVRKYVLK-KRGLLSSSAQRKPGASLT 288 (313)
T ss_dssp TCCEEEECCSCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCSTTHHHHHHHHHHH-HTTSCSCCCCCSSCCCCC
T ss_pred CCcEEEeCcccHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHH-HcCCCCCCCCCCCCCCCC
Confidence 44555555567888888888889999887766666555443322 122333333 44554444 566887664
No 27
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13
Probab=39.02 E-value=36 Score=24.67 Aligned_cols=73 Identities=10% Similarity=0.200 Sum_probs=46.5
Q ss_pred HhhhhhhchHHHHHHHHhhhccCCHHHHHHHHHHHHHhHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhcHHHH
Q 031730 15 KSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERL-LNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERI 93 (154)
Q Consensus 15 ~~~~~~~ild~~~~~L~~L~~~~~~~~~~~ll~~Fl~~~~~~-l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L 93 (154)
.+++.+.=....+..|..+ +|.|= ...|+..+... +..|..|+.++ |.+.|+.++.. .-+
T Consensus 30 ~~~f~~s~~~~~l~~i~~~----dp~Fd---~~~Fl~~ak~~iy~~Iq~A~~~g--D~~~Lr~~~t~----------~~~ 90 (194)
T 2cw9_A 30 GGLFSKTEMSEVLTEILRV----DPAFD---KDRFLKQCENDIIPNVLEAMISG--ELDILKDWCYE----------ATY 90 (194)
T ss_dssp CCTTHHHHHHHHHHHHHHH----CTTCC---HHHHHHHHHHTHHHHHHHHHHHT--CHHHHHHHBCH----------HHH
T ss_pred ccccCCCHHHHHHHHHHhh----CCCCC---HHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHhcCH----------HHH
Confidence 3444444444444455444 34443 57899999997 79999999999 99999887543 334
Q ss_pred HHHHHHHHHHHHh
Q 031730 94 KNACVAFRNFCEE 106 (154)
Q Consensus 94 ~~~~~~lE~~~~~ 106 (154)
..++.++......
T Consensus 91 ~~~~~~i~~r~~~ 103 (194)
T 2cw9_A 91 SQLAHPIQQAKAL 103 (194)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 4455555554443
No 28
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=38.57 E-value=46 Score=20.82 Aligned_cols=28 Identities=11% Similarity=0.124 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 031730 39 PDFVAEVVSLFFADSERLLNDLTRALDQ 66 (154)
Q Consensus 39 ~~~~~~ll~~Fl~~~~~~l~~L~~a~~~ 66 (154)
.+-...+++....-.+.....+..++..
T Consensus 52 ~~kar~Lld~l~~kG~~af~~F~~aL~~ 79 (94)
T 2p1h_A 52 QQRAAMLIKMILKKDNDSYVSFYNALLH 79 (94)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 29
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=37.65 E-value=70 Score=19.59 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHhhhhhhhhc
Q 031730 70 DFKMVDSHVHQLKGSSSSIG 89 (154)
Q Consensus 70 D~~~l~~~aH~LKGss~~lG 89 (154)
|++.+...+-.++..+..+-
T Consensus 10 ~~~~l~~~A~~~~~~~~~i~ 29 (99)
T 3zbh_A 10 TPEELRGVARQYNVESSNVT 29 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665553
No 30
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=36.53 E-value=99 Score=23.84 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=39.0
Q ss_pred hhhhhhcH--HHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHH-----HHHHHHHHHhhhhHHhh-cCCCCccccC
Q 031730 83 GSSSSIGA--ERIKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLV-----KNKLETLFRMEQQIVAA-GGSIPMMELS 153 (154)
Q Consensus 83 Gss~~lGa--~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~l-----~~~L~~~l~~~~~~~~~-~~~~~~~~~~ 153 (154)
|+.|.++. +-.-+.+.++=.++++++.+.+..+...+...+..+ -..++..+.. ++...- .++.|.+.++
T Consensus 208 G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~~-~G~~~g~~~R~Pl~~l~ 285 (303)
T 2wkj_A 208 GADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVIDLLIKTGVFRGLKTVLHY-MDVVSVPLCRKPFGPVD 285 (303)
T ss_dssp TCCEEEETTHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCSSCCCCTTSCCCC
T ss_pred CCCEEEeCHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH-cCCCCCCCCCCCCCCCC
Confidence 55555554 346677888877888898877665555554443332 1223333333 333222 3566877654
No 31
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=34.90 E-value=77 Score=19.25 Aligned_cols=34 Identities=9% Similarity=0.118 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHH
Q 031730 69 IDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNF 103 (154)
Q Consensus 69 ~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~ 103 (154)
+|++.+...+-.+++.+..+... +..+...+...
T Consensus 9 v~~e~l~~~A~~~~~~~~~i~~~-l~~L~~~~~~L 42 (93)
T 4ioe_A 9 ITPEELERIAGNFKNAAGEAQSQ-INRLEGDINSL 42 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 37778888888887777766532 34555555544
No 32
>1fyh_A Interferon-gamma; cytokine-receptor complex, fibronectin type-III, immune system; 2.04A {Homo sapiens} SCOP: a.26.1.3 a.26.1.3 PDB: 1eku_A 1fg9_A 3bes_L* 1hig_A
Probab=34.13 E-value=1.6e+02 Score=22.63 Aligned_cols=61 Identities=13% Similarity=0.223 Sum_probs=49.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHH
Q 031730 44 EVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFC 104 (154)
Q Consensus 44 ~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~ 104 (154)
.|+..|+.++.+.+..+...+.-+.+|..--+..+|-|-..-+.+|..-=+....+||+.-
T Consensus 77 ~l~~~f~n~s~~K~~df~~l~k~~v~d~~vQrkAi~EL~~VM~~sG~y~q~~~~keIe~LK 137 (258)
T 1fyh_A 77 DMNVKFFNSNKKKRDDFEKLTNYSVTDLNVQRKAIDELIQVMAELGANVSGEFVKEAENLK 137 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHcCcccchhHHHHHHHHH
Confidence 5688999999999999999998877799999999999999988888864444446666553
No 33
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=33.87 E-value=84 Score=19.37 Aligned_cols=69 Identities=7% Similarity=0.038 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHH--hc-CHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031730 70 DFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCE--EQ-NIEGCMSCLQQVKQEYCLVKNKLETLFRMEQQ 139 (154)
Q Consensus 70 D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~--~~-~~~~~~~~~~~l~~~~~~l~~~L~~~l~~~~~ 139 (154)
|++.+...+-.++..+..+-- .+..+...+..... .| ....+...+......+.++...|..+-...+.
T Consensus 9 ~~e~l~~~A~~~~~~~~~i~~-~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~ 80 (98)
T 3gwk_C 9 TPEELRSSAQKYTAGSQQVTE-VLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLK 80 (98)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777776643 23444555554433 12 22244555555555555555555555444433
No 34
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=33.82 E-value=48 Score=16.58 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhH
Q 031730 117 QQVKQEYCLVKNKLETLFRMEQQI 140 (154)
Q Consensus 117 ~~l~~~~~~l~~~L~~~l~~~~~~ 140 (154)
+.|+.++.+++......+....++
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~~ 25 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEKI 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677777777776666655543
No 35
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=31.63 E-value=89 Score=18.98 Aligned_cols=71 Identities=11% Similarity=0.059 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHH--hc-CHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 031730 69 IDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCE--EQ-NIEGCMSCLQQVKQEYCLVKNKLETLFRMEQQI 140 (154)
Q Consensus 69 ~D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~--~~-~~~~~~~~~~~l~~~~~~l~~~L~~~l~~~~~~ 140 (154)
+|++.+...+..+++.+..+-.. +..+...+..... .| ....+...+.+....+..+...|..+-...+..
T Consensus 6 v~~~~l~~~A~~~~~~~~~l~~~-l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~ 79 (97)
T 2vs0_A 6 MSPEEIRAKSQSYGQGSDQIRQI-LSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNST 79 (97)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888888888888888877532 3445555554432 22 223455566666666666666666665555444
No 36
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=30.62 E-value=1.3e+02 Score=20.57 Aligned_cols=38 Identities=8% Similarity=0.038 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCC
Q 031730 110 EGCMSCLQQVKQEYCLVKNKLETLFRMEQQIVAAGGSI 147 (154)
Q Consensus 110 ~~~~~~~~~l~~~~~~l~~~L~~~l~~~~~~~~~~~~~ 147 (154)
..+...+..+.....+....|+.++...++.++.+++.
T Consensus 40 ~~lk~~f~~~a~~~~~~~~eL~~~i~~lGg~p~~~~s~ 77 (153)
T 4etr_A 40 PQLKAAMLEQSRDCAAAADELERIVLELGGKPKDSTSF 77 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcH
Confidence 46677788888888888888888888877776666653
No 37
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=30.34 E-value=88 Score=18.53 Aligned_cols=37 Identities=22% Similarity=0.486 Sum_probs=29.7
Q ss_pred HHHHHHHhhhccCCHHHHHHHHHHHHHhHHHHHHHHHH
Q 031730 25 NQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTR 62 (154)
Q Consensus 25 ~~~~~L~~L~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~ 62 (154)
++|.+++++-.. +|+.+..++...-.+.+..+..|..
T Consensus 11 Pqf~~lR~~vq~-NP~~L~~lLqql~~~nP~l~~~I~~ 47 (61)
T 2f4m_B 11 PQFQQMRQIIQQ-NPSLLPALLQQIGRENPQLLQQISQ 47 (61)
T ss_dssp HHHHHHHHHHHH-CGGGHHHHHHHHHHHCHHHHHHHHH
T ss_pred hHHHHHHHHHHH-CHHHHHHHHHHHHhHCHHHHHHHHH
Confidence 457777777655 7899999999999998888887765
No 38
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=27.62 E-value=70 Score=24.90 Aligned_cols=71 Identities=7% Similarity=0.108 Sum_probs=41.0
Q ss_pred hhhhhhhcH--HHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHH-----HHHHHHHHhhhhHHhhcCCCCccccC
Q 031730 82 KGSSSSIGA--ERIKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLVK-----NKLETLFRMEQQIVAAGGSIPMMELS 153 (154)
Q Consensus 82 KGss~~lGa--~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~l~-----~~L~~~l~~~~~~~~~~~~~~~~~~~ 153 (154)
-|+.|.++. +-.-+.+.++=.++++++.+.+..+...+...+..+. ..++..+.. ++.....++.|...++
T Consensus 203 ~Ga~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~~-~G~~~g~~R~Pl~~l~ 280 (311)
T 3h5d_A 203 LGADGVISVASHTNGDEMHEMFTAIAESDMKKAAAIQRKFIPKVNALFSYPSPAPVKAILNY-MGFEAGPTRLPLVPAP 280 (311)
T ss_dssp HTCCEEEESTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTSSSTTHHHHHHHHH-HTSCCCCCCTTCCCCC
T ss_pred cCCCEEEechhhhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHH-CCCCCCCcCCCCCCCC
Confidence 355555544 3366788888888889998877666666554433321 123444443 4443333555877664
No 39
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=27.44 E-value=1.1e+02 Score=23.19 Aligned_cols=70 Identities=13% Similarity=0.021 Sum_probs=37.1
Q ss_pred hhhhhhcHHH--HHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHH-----H-HHHHHHHHhhhhHHhhcCCCCccccC
Q 031730 83 GSSSSIGAER--IKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLV-----K-NKLETLFRMEQQIVAAGGSIPMMELS 153 (154)
Q Consensus 83 Gss~~lGa~~--L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~l-----~-~~L~~~l~~~~~~~~~~~~~~~~~~~ 153 (154)
|+.|.++... +-+.+.++=+++++++.+.+..+...+...+..+ - ..++..+. .++.....++.|.+.++
T Consensus 189 G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~~K~al~-~~G~~~g~~R~Pl~~l~ 266 (286)
T 2r91_A 189 RLDGVVASSANYLPELLAGIRDAVAAGDIERARSLQFLLDEIVESARHIGYAAAVYELVEI-FQGYEAGEPRGPVYPLD 266 (286)
T ss_dssp TCSEECCGGGTTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-HHCSCCCBCCTTSCCCC
T ss_pred CCCEEEecHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHH-HcCCCCCCcCCCCCCCC
Confidence 5555554433 5667777777778888877665555544433322 1 22333333 33333333555776654
No 40
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=27.42 E-value=1.2e+02 Score=19.41 Aligned_cols=22 Identities=14% Similarity=0.439 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHH
Q 031730 55 RLLNDLTRALDQPTIDFKMVDSHV 78 (154)
Q Consensus 55 ~~l~~L~~a~~~~~~D~~~l~~~a 78 (154)
+.+..|+++++.. ||+.++...
T Consensus 67 eemdelreaveke--dwenlrdel 88 (114)
T 2p06_A 67 EEMDELREAVEKE--DWENLRDEL 88 (114)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHH
Confidence 3457788899999 999888764
No 41
>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A 3omw_A
Probab=25.89 E-value=65 Score=23.85 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=22.1
Q ss_pred hhhcHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHH
Q 031730 86 SSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVKQEYC 124 (154)
Q Consensus 86 ~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~ 124 (154)
+.+|+..+.++|..||. ..+. ...+.+|-..|+
T Consensus 152 A~~Ga~~ileL~~~l~~---~~d~---e~~i~~il~~fe 184 (198)
T 3p9y_A 152 ALMGAFVITDMINMMAK---STDL---DNDIDELIQEFE 184 (198)
T ss_dssp HHHHHHHHHHHHHHHHT---CSSH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---chhH---HHHHHHHHHHHH
Confidence 56999999999999996 2333 334455544444
No 42
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=25.86 E-value=1.2e+02 Score=23.14 Aligned_cols=70 Identities=11% Similarity=0.080 Sum_probs=36.4
Q ss_pred hhhhhhcHHH--HHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHH------HHHHHHHHHhhhhHHhhcCCCCccccC
Q 031730 83 GSSSSIGAER--IKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLV------KNKLETLFRMEQQIVAAGGSIPMMELS 153 (154)
Q Consensus 83 Gss~~lGa~~--L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~l------~~~L~~~l~~~~~~~~~~~~~~~~~~~ 153 (154)
|+.|.++... +-+.+.++=+++++++.+.+..+...+...+..+ -..++..+. .++.....++.|.+.++
T Consensus 190 G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~~K~al~-~~G~~~g~~R~Pl~~l~ 267 (293)
T 1w3i_A 190 GLDGNVAAGSNYLPEVTVTIKKLAMERKIDEALKLQFLHDEVIEASRIFGSLSSNYVLTKY-FQGYDLGYPRPPIFPLD 267 (293)
T ss_dssp TCCEEECGGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHSSCCBCCCTTSCCCC
T ss_pred CCCEEEeCHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH-HcCCCCCCcCCCCCCCC
Confidence 5454444333 5566777777778888877665555554433322 122333333 33333333455776654
No 43
>3do9_A UPF0302 protein BA_1542/GBAA1542/BAS1430; uncharacterized protein, structural genomics, protein structure initiative, PSI; 2.75A {Bacillus anthracis}
Probab=25.21 E-value=1.9e+02 Score=20.99 Aligned_cols=31 Identities=32% Similarity=0.399 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhhh
Q 031730 54 ERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSS 86 (154)
Q Consensus 54 ~~~l~~L~~a~~~~~~D~~~l~~~aH~LKGss~ 86 (154)
.+...+|..|++.+ |.+...+++..||---|
T Consensus 152 ~~L~~~ID~ALd~~--D~e~F~~Lt~~L~~~~~ 182 (188)
T 3do9_A 152 ERLLKQIDEALDKQ--DKEAFHRLTAELKMLEG 182 (188)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhc
Confidence 34789999999999 99999999998875443
No 44
>3m50_P N.plumbaginifolia H+-translocating ATPase mRNA; all helical, protein-protein complex, protein binding; HET: EBT; 2.60A {Nicotiana plumbaginifolia} PDB: 3m51_P* 4dx0_P*
Probab=25.19 E-value=16 Score=18.96 Aligned_cols=9 Identities=44% Similarity=0.800 Sum_probs=5.9
Q ss_pred HHHHHhhhh
Q 031730 76 SHVHQLKGS 84 (154)
Q Consensus 76 ~~aH~LKGs 84 (154)
...|+|||-
T Consensus 2 rElhTLkgh 10 (31)
T 3m50_P 2 RELHTLKGH 10 (31)
T ss_dssp HHHHCHHHH
T ss_pred chhhHHHHH
Confidence 456777774
No 45
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=25.03 E-value=1.2e+02 Score=20.90 Aligned_cols=52 Identities=8% Similarity=0.123 Sum_probs=33.4
Q ss_pred hcHHHHHHHHHHHHHHHHhc----------C-Hh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031730 88 IGAERIKNACVAFRNFCEEQ----------N-IE--GCMSCLQQVKQEYCLVKNKLETLFRMEQQ 139 (154)
Q Consensus 88 lGa~~L~~~~~~lE~~~~~~----------~-~~--~~~~~~~~l~~~~~~l~~~L~~~l~~~~~ 139 (154)
+.+..+.++...|+.+.... + .+ .....++.++-+++.+-..++.++...+.
T Consensus 6 l~~~~~~kal~~L~e~~~~~~~~~~~~~~~~~~~~~~~dg~iq~fe~t~Elawk~~k~~L~~~g~ 70 (146)
T 1jog_A 6 LNLNVLDAAFYSLEQTVVQISDRNWFDMQPSIVQDTLIAGAIQKFEFVYELSLKMMKRQLQQDAI 70 (146)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcccccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56667777777777665531 1 11 12346777788888888888888866643
No 46
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A
Probab=25.00 E-value=12 Score=28.14 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHhHHHH-HHHHHHHhcCCCCCHHHHHHHHHH
Q 031730 38 NPDFVAEVVSLFFADSERL-LNDLTRALDQPTIDFKMVDSHVHQ 80 (154)
Q Consensus 38 ~~~~~~~ll~~Fl~~~~~~-l~~L~~a~~~~~~D~~~l~~~aH~ 80 (154)
||.|- ...|+...... +..+..|+..+ |...|+.+++.
T Consensus 72 DPsF~---~~~Fl~~a~~ai~p~Il~Af~~G--D~~~Lk~llse 110 (222)
T 3qk9_A 72 DPTFS---NESFTRHLREYIVPEILEAYVKG--DVKVLKKWFSE 110 (222)
T ss_dssp ---CC---HHHHHHHHHHTHHHHHHHHHHHT--CHHHHHHHBCH
T ss_pred CCCCC---HHHHHHHHHHHHHHHHHHHHHcC--CHHHHHhhcCH
Confidence 55555 56888888777 56789999999 99998887653
No 47
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=24.82 E-value=1e+02 Score=23.97 Aligned_cols=70 Identities=9% Similarity=0.076 Sum_probs=36.2
Q ss_pred hhhhhhcHHH--HHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHH-----HHHHHHHHhhhhHHhhcCCCCccccC
Q 031730 83 GSSSSIGAER--IKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLVK-----NKLETLFRMEQQIVAAGGSIPMMELS 153 (154)
Q Consensus 83 Gss~~lGa~~--L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~l~-----~~L~~~l~~~~~~~~~~~~~~~~~~~ 153 (154)
|+.|.++... .-+.+.++=.++++++.+.+..+...+...+..+. ..++..+. .++...-.++.|...++
T Consensus 222 G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~-~~G~~~g~~R~Pl~~l~ 298 (315)
T 3na8_A 222 GAKGWCSAAPNLIPTLNGQLYQAVLDGDLEKARALFYRQLPLLDFILRRGLPTTIKAGLG-LSGLEVGAPRLPVQALD 298 (315)
T ss_dssp TCSEEEESGGGTCHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-HTTCCCCCCCTTSCCCC
T ss_pred CCCEEEechhhhCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHH-HcCCCCCCcCCCCCCCC
Confidence 4444444332 45666666667778888766655555444333221 22333343 34443333555877664
No 48
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=24.23 E-value=1.4e+02 Score=22.97 Aligned_cols=71 Identities=10% Similarity=0.098 Sum_probs=40.2
Q ss_pred hhhhhhhc--HHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHH-----HHHHHHHHhhhhHHhhcCCCCccccC
Q 031730 82 KGSSSSIG--AERIKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLVK-----NKLETLFRMEQQIVAAGGSIPMMELS 153 (154)
Q Consensus 82 KGss~~lG--a~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~l~-----~~L~~~l~~~~~~~~~~~~~~~~~~~ 153 (154)
-|+.|.++ ++-.-+.+.++=+++++++.+.+..+...+...+..+. ..++..+. .++.....++.|.+.++
T Consensus 208 ~G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~-~~G~~~g~~R~Pl~~l~ 285 (301)
T 1xky_A 208 VGAKGIVSVASHVIGNEMQEMIAAFQAGEFKKAQKLHQLLVRVTDSLFMAPSPTPVKTALQ-MVGLDVGSVRLPLLPLT 285 (301)
T ss_dssp TTCCEEEESTHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHH-HTTCCCCCCCTTSCCCC
T ss_pred cCCCEEEcCHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-HcCCCCCCcCCCCCCCC
Confidence 35555555 44467788888888889998877666555554443221 12333333 33433333455776654
No 49
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=23.61 E-value=75 Score=24.51 Aligned_cols=70 Identities=11% Similarity=0.110 Sum_probs=38.4
Q ss_pred hhhhhhcHHH--HHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHH-----HHHHHHHHHhhhhHHhhcCCCCccccC
Q 031730 83 GSSSSIGAER--IKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLV-----KNKLETLFRMEQQIVAAGGSIPMMELS 153 (154)
Q Consensus 83 Gss~~lGa~~--L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~l-----~~~L~~~l~~~~~~~~~~~~~~~~~~~ 153 (154)
|+.|.++... .-+.+.++=.++++++.+.+..+...+...+..+ -..++..+. .++.....++.|...++
T Consensus 201 G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~-~~G~~~g~~R~Pl~~l~ 277 (300)
T 3eb2_A 201 GGVGWMAGPACIAPRQSVALYELCKAQRWDEALMLQRKLWRVNEAFAKFNLAACIKAGLA-LQGYDVGDPIPPQAALT 277 (300)
T ss_dssp TCCEEEEGGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHTHHHHHHTTSCHHHHHHHHHH-HTTCCCCCCCTTSCCCC
T ss_pred CCCEEEeChhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH-HCCCCCCCcCCCCCCCC
Confidence 5555544433 4567777777778888877666555554433322 122444444 34444444566877664
No 50
>4h3k_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, phosphatase, RNA polymerase II, hydrolase; HET: SEP; 2.00A {Homo sapiens} PDB: 3o2q_B* 4h3h_B* 3o2s_B
Probab=23.37 E-value=95 Score=23.21 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=15.4
Q ss_pred hhhcHHHHHHHHHHHHHH
Q 031730 86 SSIGAERIKNACVAFRNF 103 (154)
Q Consensus 86 ~~lGa~~L~~~~~~lE~~ 103 (154)
+.+|+..+.++|..||..
T Consensus 168 A~~Ga~~ileL~~~le~~ 185 (214)
T 4h3k_B 168 ATLGAFLICELCQCIQHT 185 (214)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 458999999999999863
No 51
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.36 E-value=93 Score=19.73 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=27.8
Q ss_pred HHHhhhhhhchHHH-HHHHHhhhccCCHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 031730 13 YTKSLFMEGVLDNQ-FLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQ 66 (154)
Q Consensus 13 ~~~~~~~~~ild~~-~~~L~~L~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~ 66 (154)
-+.-++..+|+... .+.|.........+-..++++....-.+.-+..+-.++..
T Consensus 26 vld~L~~~~vlt~~~~e~I~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~e 80 (97)
T 3ygs_P 26 LWDVLLSRELFRPHMIEDIQRAGSGSRRDQARQLIIDLETRGSQALPLFISCLED 80 (97)
T ss_dssp THHHHHHTTSSCHHHHHHHHTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 44455566666642 3333321111245666666666666666666666666655
No 52
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=22.94 E-value=2.1e+02 Score=21.81 Aligned_cols=70 Identities=10% Similarity=0.125 Sum_probs=38.4
Q ss_pred hhhhhhcH--HHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHH-----HHHHHHHHHhhhhHHhhcCCCCc-cccC
Q 031730 83 GSSSSIGA--ERIKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLV-----KNKLETLFRMEQQIVAAGGSIPM-MELS 153 (154)
Q Consensus 83 Gss~~lGa--~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~l-----~~~L~~~l~~~~~~~~~~~~~~~-~~~~ 153 (154)
|+.|.++. +-.-+.+.++=+++++++.+.+..+...+...+..+ -..++..+.. +++..-.++.|. +.++
T Consensus 200 G~~G~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~~-~G~~~g~~R~Pl~~~l~ 277 (293)
T 1f6k_A 200 GVDGAIGSTFNVNGVRARQIFELTKAGKLKEALEIQHVTNDLIEGILANGLYLTIKELLKL-EGVDAGYCREPMTSKAT 277 (293)
T ss_dssp TCSEEEESTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTCCCBCCCTTSCCSCC
T ss_pred CCcEEEeCHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-cCCCCCCcCCCCCCCCC
Confidence 55555553 346678888878888898887666555554433322 1223333333 333333345576 6553
No 53
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=22.92 E-value=2.3e+02 Score=21.76 Aligned_cols=62 Identities=10% Similarity=-0.017 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHH-----HHHHHHHHhhhhHHhhcCCCCccccC
Q 031730 91 ERIKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLVK-----NKLETLFRMEQQIVAAGGSIPMMELS 153 (154)
Q Consensus 91 ~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~l~-----~~L~~~l~~~~~~~~~~~~~~~~~~~ 153 (154)
+-.-+.+.++=.+.++++.+.+..+...+...+..+. ..++..+. ..++....++.|...++
T Consensus 220 n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~K~al~-~~G~~~g~~R~Pl~~l~ 286 (304)
T 3l21_A 220 HLAAGQLRELLSAFGSGDIATARKINIAVAPLCNAMSRLGGVTLSKAGLR-LQGIDVGDPRLPQVAAT 286 (304)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH-HTTCCCCCCCTTSCCCC
T ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH-hcCCCCCCcCCCCCCCC
Confidence 4456777777788888988876665555444332221 22334444 34443333455877654
No 54
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=21.90 E-value=1.4e+02 Score=23.17 Aligned_cols=70 Identities=17% Similarity=0.044 Sum_probs=35.0
Q ss_pred hhhhhhcHH--HHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHH--------HHHHHHHHHhhhhHHhhcCCCCcccc
Q 031730 83 GSSSSIGAE--RIKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLV--------KNKLETLFRMEQQIVAAGGSIPMMEL 152 (154)
Q Consensus 83 Gss~~lGa~--~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~l--------~~~L~~~l~~~~~~~~~~~~~~~~~~ 152 (154)
|+.|.++.. -.-+.+.++=.++++++.+.+..+...+...+..+ ...++..+.. +++..-.++.|...+
T Consensus 207 G~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~~~~~~~~~~~~iK~al~~-~G~~~g~~R~Pl~~l 285 (314)
T 3d0c_A 207 GAVGFTSGLVNVFPQKSFALLEALEEGNQEKIWDVWEDVVPFEDLRAKHNNGNNVVIIKEAMEQ-LGLRAGVTREPVNPL 285 (314)
T ss_dssp TCCEEEESGGGTCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH-TTCCCCCCCTTCCSC
T ss_pred CCCEEEecHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHH-CCCCCCCcCCCCCCC
Confidence 444444332 24556666666677888877665555554433322 1123333333 343333345577665
Q ss_pred C
Q 031730 153 S 153 (154)
Q Consensus 153 ~ 153 (154)
+
T Consensus 286 ~ 286 (314)
T 3d0c_A 286 S 286 (314)
T ss_dssp C
T ss_pred C
Confidence 4
No 55
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=21.65 E-value=86 Score=24.41 Aligned_cols=60 Identities=10% Similarity=0.034 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHH-----HHHHHHHHhhhhHHhhcCCCCccccC
Q 031730 93 IKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLVK-----NKLETLFRMEQQIVAAGGSIPMMELS 153 (154)
Q Consensus 93 L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~l~-----~~L~~~l~~~~~~~~~~~~~~~~~~~ 153 (154)
.-+.+.++=.++++++.+.+..+...+...+..+. ..++..+. ..+....+++.|.+.++
T Consensus 232 ~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~l~~~~~~~~~K~al~-~~G~~~~~~R~Pl~~l~ 296 (314)
T 3qze_A 232 APRAMSDLCAAAMRGDAAAARAINDRLMPLHKALFIESNPIPVKWALH-EMGLIPEGIRLPLTWLS 296 (314)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHH-HTTSSCSBCCTTSCCCC
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH-HCCCCCCCcCCCCCCCC
Confidence 45666677777788888877666665555443321 12343333 34444445777887764
No 56
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=20.93 E-value=1.8e+02 Score=18.84 Aligned_cols=44 Identities=2% Similarity=-0.103 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHHhcCHhhHHHHH
Q 031730 70 DFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCL 116 (154)
Q Consensus 70 D~~~l~~~aH~LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~ 116 (154)
....+...+..+|-.+- ..++..++..+...+..++.+.+....
T Consensus 87 ~~~~i~~y~~~v~~~~~---~r~l~~~~~~i~~~~~~~d~~~~l~~~ 130 (143)
T 2r6a_C 87 SEQELEDYIRHVLNRPK---WLMLKVKEQEKTEAERRKDFLTAARIA 130 (143)
T ss_dssp CHHHHHHHHHHHHTHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 45677888888876654 467777888888777777665544333
No 57
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=20.73 E-value=1e+02 Score=17.73 Aligned_cols=23 Identities=4% Similarity=0.283 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHH
Q 031730 37 SNPDFVAEVVSLFFADSERLLND 59 (154)
Q Consensus 37 ~~~~~~~~ll~~Fl~~~~~~l~~ 59 (154)
+|++|+..+-+.|+....+.+..
T Consensus 26 nD~~Fl~~IHeAYl~sl~~~~~n 48 (51)
T 2wx3_A 26 NDSSFLSTLHEVYLQVLTKNKDN 48 (51)
T ss_dssp HCHHHHHHHHHHHHHTTC-----
T ss_pred cCHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999988888877665544
Done!