BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031731
(154 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1 OS=Arabidopsis
thaliana GN=AHP1 PE=1 SV=1
Length = 154
Score = 220 bits (560), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 111/154 (72%), Positives = 136/154 (88%)
Query: 1 MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDL 60
M++ Q Q+ L +YTKSLF+EG+LD+QFLQLQQLQDESNPDFV++VV+LFF DS+R+LNDL
Sbjct: 1 MDLVQKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDL 60
Query: 61 TRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVK 120
+ +LDQ +DFK VD HVHQLKGSSSSIGA+R+KNACV FR+FCE+QN+E C CLQQVK
Sbjct: 61 SLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVK 120
Query: 121 QEYCLVKNKLETLFRMEQQIVAAGGSIPMMELSF 154
QEY LVKN+LETLF++EQQIVA+GG IP +EL F
Sbjct: 121 QEYYLVKNRLETLFKLEQQIVASGGMIPAVELGF 154
>sp|Q8L9T7|AHP5_ARATH Histidine-containing phosphotransfer protein 5 OS=Arabidopsis
thaliana GN=AHP5 PE=1 SV=2
Length = 157
Score = 181 bits (459), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 118/152 (77%), Gaps = 1/152 (0%)
Query: 3 VGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTR 62
V Q+QR+ +Y SL+ +G LDNQF +L++LQDE PDFVAEVVSLFF D +L+N ++
Sbjct: 6 VAQLQRQFQDYIVSLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMSI 65
Query: 63 ALDQP-TIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVKQ 121
+L++P +DFK VDS VHQLKGSSSS+GA R+KN C++F+ C+ QN EGC+ CLQQV
Sbjct: 66 SLERPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREGCLRCLQQVDY 125
Query: 122 EYCLVKNKLETLFRMEQQIVAAGGSIPMMELS 153
EY ++K KL+ LF +E+QI+ AGG+IP ++++
Sbjct: 126 EYKMLKTKLQDLFNLEKQILQAGGTIPQVDIN 157
>sp|Q9SAZ5|AHP3_ARATH Histidine-containing phosphotransfer protein 3 OS=Arabidopsis
thaliana GN=AHP3 PE=1 SV=2
Length = 155
Score = 181 bits (459), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/151 (56%), Positives = 116/151 (76%), Gaps = 1/151 (0%)
Query: 3 VGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTR 62
+ Q+QRR ++T SL+ +G LD+QF +L++LQDE +PDFVAEVV+LFF D E+L++++ R
Sbjct: 5 IAQLQRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMAR 64
Query: 63 ALDQP-TIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVKQ 121
ALDQ +DFK+V S VHQLKGSSSS+GA+R+K CV + C+ QN EGC+ CLQQV
Sbjct: 65 ALDQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEGCVRCLQQVDI 124
Query: 122 EYCLVKNKLETLFRMEQQIVAAGGSIPMMEL 152
EY +K KL+ LF +EQQIV AGG IP +++
Sbjct: 125 EYKTLKAKLQDLFNLEQQIVQAGGRIPQVDI 155
>sp|Q9ZNV8|AHP2_ARATH Histidine-containing phosphotransfer protein 2 OS=Arabidopsis
thaliana GN=AHP2 PE=1 SV=1
Length = 156
Score = 170 bits (431), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 116/152 (76%), Gaps = 1/152 (0%)
Query: 3 VGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTR 62
+ Q+QR+ +YT SL+ +G LD+QF +L++LQD+ +PDFV+EV+SLFF D +L++++ R
Sbjct: 5 IAQLQRQFRDYTISLYQQGFLDDQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMAR 64
Query: 63 ALDQP-TIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVKQ 121
ALD T+DF V + VHQLKGSSSS+GA+R+K CV+F+ CE +N EGC+ CLQQV
Sbjct: 65 ALDTTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEGCVRCLQQVDI 124
Query: 122 EYCLVKNKLETLFRMEQQIVAAGGSIPMMELS 153
EY +K KL+ +F +E+QI+ AGG +P ++++
Sbjct: 125 EYKALKTKLQDMFNLEKQIIQAGGIVPQVDIN 156
>sp|Q9LU15|AHP4_ARATH Histidine-containing phosphotransfer protein 4 OS=Arabidopsis
thaliana GN=AHP4 PE=1 SV=2
Length = 127
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 88/120 (73%)
Query: 19 MEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHV 78
M+G LD QF++L++LQD++NP+FV EV +L+F DS RL+N++ +AL++ + DF +DS++
Sbjct: 8 MQGYLDEQFMELEELQDDANPNFVEEVSALYFKDSARLINNIDQALERGSFDFNRLDSYM 67
Query: 79 HQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLVKNKLETLFRMEQ 138
HQ KGSS+SIGA ++K C FR +C N EGC+ QQ+K+E+ ++ KLE F+ Q
Sbjct: 68 HQFKGSSTSIGASKVKAECTTFREYCRAGNAEGCLRTFQQLKKEHSTLRKKLEHYFQASQ 127
>sp|Q6VAK4|HP1_ORYSJ Histidine-containing phosphotransfer protein 1 OS=Oryza sativa
subsp. japonica GN=HP1 PE=1 SV=1
Length = 149
Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 102/143 (71%), Gaps = 1/143 (0%)
Query: 1 MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDES-NPDFVAEVVSLFFADSERLLND 59
M ++ +L S+F +G++D QF QLQ LQDE P FV+EVV+LF D++R++N+
Sbjct: 1 MAAAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINE 60
Query: 60 LTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQV 119
+ L+QP ++F VD++VHQLKGSS+S+GA+++K C+ FR FC++++ +GC+ L V
Sbjct: 61 IATLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVV 120
Query: 120 KQEYCLVKNKLETLFRMEQQIVA 142
+ ++ ++NK +T+ ++EQQI A
Sbjct: 121 RNDFYDLRNKFQTMLQLEQQIQA 143
>sp|Q9SSC9|AHP6_ARATH Histidine-containing phosphotransfer protein 6 OS=Arabidopsis
thaliana GN=AHP6 PE=2 SV=2
Length = 154
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 105/151 (69%), Gaps = 2/151 (1%)
Query: 1 MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDL 60
+ V ++Q + SLF +GVLD QFLQLQQLQDE++P+FV +V++++F +SE+LL +L
Sbjct: 4 LGVDRLQADINRLLASLFHQGVLDEQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRNL 63
Query: 61 TRA-LDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQV 119
+D+ D+K + H++QL GSSSSIGA R++N CVAFR+ E N GC+ L+ V
Sbjct: 64 RLLLMDREFSDYKKIGLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPGCLRGLEVV 123
Query: 120 KQEYCLVKNKLETLFRMEQQ-IVAAGGSIPM 149
+ EY +KN + LF++EQQ I+AAG PM
Sbjct: 124 EHEYHYLKNMMHELFQLEQQRILAAGVRYPM 154
>sp|O94321|MPR1_SCHPO Multistep phosphorelay regulator 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mpr1 PE=1 SV=1
Length = 295
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 27 FLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSS 86
F QL ++ D+ +F +V +F +E + DL +AL+ D K + S H LKGSS+
Sbjct: 171 FDQLLEMDDDDEHEFSKSIVWNYFEQAETTIADLQKALEAK--DLKKLSSLGHFLKGSSA 228
Query: 87 SIGAERIKNACVAFRNFCEEQNIEGCM 113
+G +++ C +N+ ++ +G M
Sbjct: 229 VLGLTKMRKVCERIQNYGSLRSRDGVM 255
>sp|Q54RR8|RDEA_DICDI Phosphorelay intermediate protein rdeA OS=Dictyostelium discoideum
GN=rdeA PE=1 SV=1
Length = 254
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 40 DFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVA 99
+F E++ + + E L +L + + D K H H +KGSSS IG E ++
Sbjct: 28 EFTFELLDSYISSVEEHLPELLNSFE--AKDLKGAVLHSHDIKGSSSYIGCEAVRYVSGK 85
Query: 100 FRNFCEEQNIEGCMSCLQQVKQE 122
+C+ +E S ++K+E
Sbjct: 86 IEAYCKNDELEKAESFYPELKKE 108
>sp|Q6MEQ3|COAE_PARUW Dephospho-CoA kinase OS=Protochlamydia amoebophila (strain UWE25)
GN=coaE PE=3 SV=1
Length = 203
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 5/117 (4%)
Query: 9 RLLEYTKSLFMEGVLDNQFLQLQQLQDESN--PDFVAEVVSLFFADSERLLNDLTRALDQ 66
RLL + + V Q Q+ QD N P F+AEV L+ +D + + + +
Sbjct: 80 RLLTGLEKILHPAVYGEIEQQYQKQQDSKNQFPFFIAEVPLLYESDGAKFFDTIISVVAD 139
Query: 67 PTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFR-NFCEEQNIEGCMSCLQQVKQE 122
P I + +H H+ + S A +I A R ++ N G +S LQQ +E
Sbjct: 140 PEISLQRFKTHTHKSEKEFQSRMARQISPLEKAIRADYVVLNN--GTLSELQQSLRE 194
>sp|B7J0S6|SYI_BORBZ Isoleucine--tRNA ligase OS=Borrelia burgdorferi (strain ZS7) GN=ileS
PE=3 SV=1
Length = 1042
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 14 TKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERL---LNDLTRALDQPTID 70
TK L++EG+ Q+Q L+ E N D V++ ++L+ +SE L LN + + T+
Sbjct: 955 TKELYLEGLTREFVRQIQNLRKEKNFD-VSDRINLYIENSETLKEMLNKFEKYIKTETLA 1013
Query: 71 FKMV 74
++
Sbjct: 1014 LNII 1017
>sp|Q6FJW2|EXO70_CANGA Exocyst complex protein EXO70 OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=EXO70
PE=3 SV=1
Length = 623
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 52 DSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIG-AERIKNACVAFRNFCEEQNIE 110
D+++ + D+TR+L + T+D + S +Q+ S G E + R F E +
Sbjct: 331 DADKQVKDVTRSLFKDTVD--RIKSKTNQMTTIPSDNGVTEATVDTMSRLRKFSEYKT-- 386
Query: 111 GCMSCLQQVKQEYCLVKNKLETLFRMEQQIVA 142
GC++ ++ + ++ L K+ E + ++ +A
Sbjct: 387 GCLAAMESISRDVWLSKSFREKEYTIQSAAIA 418
>sp|C5BS89|NRDR_TERTT Transcriptional repressor NrdR OS=Teredinibacter turnerae (strain
ATCC 39867 / T7901) GN=nrdR PE=3 SV=1
Length = 155
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 33/59 (55%)
Query: 52 DSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIE 110
D E+L N L RAL++ + + +++ +H ++ ++G IK+ + + E QN++
Sbjct: 62 DEEKLRNGLQRALEKRPVSVEAIETALHNVRHYLQALGEREIKSLVIGEKVMEELQNLD 120
>sp|Q0SM18|SYI_BORAP Isoleucine--tRNA ligase OS=Borrelia afzelii (strain PKo) GN=ileS PE=3
SV=1
Length = 1042
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 14 TKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERL---LNDLTRALDQPTID 70
TK L++EG+ Q+Q L+ E N D V++ ++L+ ++E L LN + + T+
Sbjct: 955 TKELYLEGLTREFVRQIQNLRKEKNFD-VSDRINLYIENNETLQEILNKFEKYIKTETLA 1013
Query: 71 FKMV 74
++
Sbjct: 1014 LNII 1017
>sp|O51773|SYI_BORBU Isoleucine--tRNA ligase OS=Borrelia burgdorferi (strain ATCC 35210 /
B31 / CIP 102532 / DSM 4680) GN=ileS PE=3 SV=1
Length = 1042
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 14 TKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERL---LNDLTRALDQPTID 70
TK L++EG+ Q+Q L+ E N D V++ ++L+ ++E L LN + + T+
Sbjct: 955 TKELYLEGLTREFVRQIQNLRKEKNFD-VSDRINLYIENNETLKEMLNKFEKYIKTETLA 1013
Query: 71 FKMV 74
++
Sbjct: 1014 LNII 1017
>sp|P45011|LPXB_HAEIN Lipid-A-disaccharide synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=lpxB PE=3 SV=2
Length = 390
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 6 MQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSE 54
+ +RL++ T + + +L N+ L + +Q+E P+ +AE +S++ +D E
Sbjct: 301 LAKRLVK-TDYISLPNLLANEMLVPEMIQEECTPELLAEKLSVYLSDDE 348
>sp|A5UD44|LPXB_HAEIE Lipid-A-disaccharide synthase OS=Haemophilus influenzae (strain
PittEE) GN=lpxB PE=3 SV=1
Length = 390
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 6 MQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSE 54
+ +RL++ T + + +L N+ L + +Q+E P+ +AE +S++ +D E
Sbjct: 301 LAKRLVK-TDYISLPNLLANEMLVPEMIQEECTPELLAEKLSVYLSDDE 348
>sp|P0DKY0|CYAE_BORPE Protein CyaE OS=Bordetella pertussis (strain Tohama I / ATCC
BAA-589 / NCTC 13251) GN=cyaE PE=3 SV=1
Length = 474
Score = 30.0 bits (66), Expect = 5.5, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 59 DLTRALDQPTID-----FKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCM 113
D+ RA D PT+D ++ +V GSS S+ A + F F I+G
Sbjct: 303 DVARATDMPTVDLSLGHYRNSSENVSVFAGSSRSVSAS-LNLRIPLFDGFARRHRIQGAR 361
Query: 114 SCLQQVKQEYCLVKNKLET 132
+ +Q +QE L + +L T
Sbjct: 362 AEVQ--RQEALLDQARLAT 378
>sp|J7RET5|CYAE_BORP1 Protein CyaE OS=Bordetella pertussis (strain ATCC 9797 / DSM 5571 /
NCTC 10739 / 18323) GN=cyaE PE=3 SV=1
Length = 474
Score = 30.0 bits (66), Expect = 5.5, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 59 DLTRALDQPTID-----FKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCM 113
D+ RA D PT+D ++ +V GSS S+ A + F F I+G
Sbjct: 303 DVARATDMPTVDLSLGHYRNSSENVSVFAGSSRSVSAS-LNLRIPLFDGFARRHRIQGAR 361
Query: 114 SCLQQVKQEYCLVKNKLET 132
+ +Q +QE L + +L T
Sbjct: 362 AEVQ--RQEALLDQARLAT 378
>sp|B2V1Q9|RLMH_CLOBA Ribosomal RNA large subunit methyltransferase H OS=Clostridium
botulinum (strain Alaska E43 / Type E3) GN=rlmH PE=3
SV=1
Length = 159
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 1 MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSE--RLLN 58
+ VG+++ + L++ + + + L + +LQDE PD +E L D E ++LN
Sbjct: 6 ISVGKLKEKYLKHAIDEYSKRLSRYCKLNIVELQDEQTPDNASEKDELIIKDKEGNKILN 65
Query: 59 DLTRALDQPTIDFK 72
+ + T+D K
Sbjct: 66 SIKDNMYVITLDLK 79
>sp|B2TRC7|RLMH_CLOBB Ribosomal RNA large subunit methyltransferase H OS=Clostridium
botulinum (strain Eklund 17B / Type B) GN=rlmH PE=3
SV=1
Length = 159
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 1 MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSE--RLLN 58
+ VG+++ + L++ + + + L + +LQDE PD +E L D E ++LN
Sbjct: 6 ISVGKLKEKYLKHAIDEYSKRLSRYCKLNILELQDEQTPDNASEKDELIIKDKEGNKILN 65
Query: 59 DLTRALDQPTIDFK 72
+ + T+D K
Sbjct: 66 SIKDNMYVITLDLK 79
>sp|Q4QLM6|LPXB_HAEI8 Lipid-A-disaccharide synthase OS=Haemophilus influenzae (strain
86-028NP) GN=lpxB PE=3 SV=1
Length = 390
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 6 MQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSE 54
+ +RL++ T + + +L N+ L + +Q+E P+ +AE +S + +D E
Sbjct: 301 LAKRLVK-TDYISLPNLLANEMLVPEMIQEECTPELLAEKLSAYLSDDE 348
>sp|A5UII8|LPXB_HAEIG Lipid-A-disaccharide synthase OS=Haemophilus influenzae (strain
PittGG) GN=lpxB PE=3 SV=1
Length = 390
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 6 MQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSE 54
+ +RL++ T + + +L N+ L + +Q+E P+ +AE +S + +D E
Sbjct: 301 LAKRLVK-TDYISLPNLLANEMLVPEMIQEECTPELLAEKLSAYLSDDE 348
>sp|A3QJT1|YIDC_SHELP Membrane protein insertase YidC OS=Shewanella loihica (strain ATCC
BAA-1088 / PV-4) GN=yidC PE=3 SV=1
Length = 542
Score = 29.3 bits (64), Expect = 9.0, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 8/125 (6%)
Query: 11 LEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVA---EVVSLFFADSERL-LNDLTRALDQ 66
+E +++ + G+L FL QQ Q + NP VA VV+ D+ + D AL +
Sbjct: 1 MESQRNILLIGLLFVSFLLWQQWQTDKNPQPVATESSVVASTVTDAHSADVPDADAALPE 60
Query: 67 PTIDFK-MVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCL 125
K ++ QL + +G + + +A V + EQ+ E LQQ K Y +
Sbjct: 61 AVAASKELISVTTDQLTLKINPVGGDIVYSALVGHK---LEQDKEEPFVLLQQTKDIYYI 117
Query: 126 VKNKL 130
++ L
Sbjct: 118 SQSGL 122
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,011,996
Number of Sequences: 539616
Number of extensions: 1822472
Number of successful extensions: 5055
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 5034
Number of HSP's gapped (non-prelim): 42
length of query: 154
length of database: 191,569,459
effective HSP length: 107
effective length of query: 47
effective length of database: 133,830,547
effective search space: 6290035709
effective search space used: 6290035709
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)