Query 031732
Match_columns 154
No_of_seqs 170 out of 656
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 04:35:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1726 HVA22/DP1 gene product 100.0 3E-32 6.5E-37 221.2 10.3 132 1-137 8-141 (225)
2 KOG1725 Protein involved in me 100.0 2.7E-31 5.8E-36 210.5 3.8 116 2-123 65-181 (186)
3 PF03134 TB2_DP1_HVA22: TB2/DP 100.0 7.6E-30 1.7E-34 181.6 7.0 83 2-84 12-94 (94)
4 COG5052 YOP1 Protein involved 99.8 1.6E-21 3.5E-26 153.2 5.5 92 2-93 66-157 (186)
5 KOG1726 HVA22/DP1 gene product 69.5 46 0.001 27.5 8.7 70 20-89 96-165 (225)
6 PF15144 DUF4576: Domain of un 54.9 24 0.00052 24.8 3.8 35 115-151 47-81 (88)
7 PF09726 Macoilin: Transmembra 53.5 25 0.00054 33.6 5.0 59 24-82 28-114 (697)
8 PF11020 DUF2610: Domain of un 28.6 79 0.0017 22.2 3.1 45 93-138 35-80 (82)
9 smart00648 SWAP Suppressor-of- 26.7 88 0.0019 19.4 2.9 24 109-132 2-25 (54)
10 PF07002 Copine: Copine; Inte 24.3 1.1E+02 0.0023 23.3 3.5 32 108-139 67-101 (146)
11 PF14975 DUF4512: Domain of un 22.5 32 0.0007 24.5 0.3 14 73-86 12-25 (88)
12 COG2832 Uncharacterized protei 22.2 79 0.0017 23.7 2.3 53 30-87 6-63 (119)
13 PF05915 DUF872: Eukaryotic pr 21.9 2.1E+02 0.0046 21.0 4.5 25 45-69 83-107 (115)
14 PF02756 GYR: GYR motif; Inte 21.6 36 0.00079 17.2 0.3 6 149-154 1-6 (18)
15 COG1939 Ribonuclease III famil 20.9 2E+02 0.0042 22.0 4.2 47 73-134 23-70 (132)
16 PF09125 COX2-transmemb: Cytoc 20.1 88 0.0019 18.8 1.7 13 29-41 15-27 (38)
No 1
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=99.97 E-value=3e-32 Score=221.19 Aligned_cols=132 Identities=23% Similarity=0.400 Sum_probs=113.6
Q ss_pred CeeeeehHHHHHHHHhc--CChhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCCcccchhHhHHh
Q 031732 1 MGCVIFNRHASIKAIEA--RSASDDQQWLTYWVLYSMITLFELTFAKVLELITIWPYAKLIFSCWLVLPQFNGAAYVYRH 78 (154)
Q Consensus 1 ~i~~~YPay~S~kale~--~~~~~~~~WL~YWvv~a~~~~~E~~~~~~l~wiP~Y~~~Kl~fl~wL~~P~~~GA~~iY~~ 78 (154)
++|.+||||+|+|++++ ++.++...|++|||++|+++++|.++|.+++|+|||+++|++|++||++|.++|+.+||++
T Consensus 8 v~G~~yPAy~tyKavk~~~~~i~el~~W~~YWIv~A~~t~~e~~~d~~lsw~P~Y~e~Kl~fv~wL~~p~t~G~~~vY~~ 87 (225)
T KOG1726|consen 8 VFGYAYPAYATYKAVKSNRKDIRELLRWMMYWIVFAALTVFETLTDFLLSWFPFYSEFKLAFVIWLLSPATKGASYVYRK 87 (225)
T ss_pred HHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccccCccHHHHHH
Confidence 36789999999999999 5678899999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcCccchhhhhhhhhhhhhhchhHHHHHHHHHHHHHcHHHHHHHHHHHHhhh
Q 031732 79 FVRPFYMNPQSASSKIWYVPRKKNIFRQQDDILTAAEKYMQEHGTESFERLIAKTEREE 137 (154)
Q Consensus 79 ~v~P~l~~~e~~~id~~~~~~k~~~~~~~~d~~~~~~~~~~~~G~~af~kll~~~~~~~ 137 (154)
|+||++.+||. +||+.+.+.| .+.-|.....-+.....++.+.-..+.+-..+.
T Consensus 88 f~~p~ls~~E~-eid~~l~~~k----~~~~~~a~~~~~r~l~~~~~~~~~a~~~~~~~~ 141 (225)
T KOG1726|consen 88 FLRPFLSKHEE-EIDRMLVEAK----ERVYDAAVSILKRALNYAQTYALEAAVFSQGQL 141 (225)
T ss_pred HhhhhhhhHHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999998 9999999988 444555555555566677776655555444444
No 2
>KOG1725 consensus Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.7e-31 Score=210.53 Aligned_cols=116 Identities=45% Similarity=0.743 Sum_probs=98.0
Q ss_pred eeeeehHHHHHHHHhcCChhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCCcccchhHhHHhhhc
Q 031732 2 GCVIFNRHASIKAIEARSASDDQQWLTYWVLYSMITLFELTFAKVLELITIWPYAKLIFSCWLVLPQFNGAAYVYRHFVR 81 (154)
Q Consensus 2 i~~~YPay~S~kale~~~~~~~~~WL~YWvv~a~~~~~E~~~~~~l~wiP~Y~~~Kl~fl~wL~~P~~~GA~~iY~~~v~ 81 (154)
||++||+|+|++|||++++.||++||+||++||+++++|.++..+++|+|+|+++|++|++||++|+++||..+|+++++
T Consensus 65 ig~~yP~y~Sv~aIes~~k~dD~~wL~YWivys~lslie~~~~~il~~iP~y~~~K~~fl~~l~lP~~~Ga~~iY~~~vr 144 (186)
T KOG1725|consen 65 IGFLYPAYASVKAIESPSKDDDTQWLTYWIVYSILSLVEFFSVAILSWIPFYWYAKLIFLLWLVLPQFNGAAIIYNHIVR 144 (186)
T ss_pred HHHHHHHHHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhccCCCCceeeechhhh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcCccchhh-hhhhhhhhhhhchhHHHHHHHHHHHHHcH
Q 031732 82 PFYMNPQSASSKI-WYVPRKKNIFRQQDDILTAAEKYMQEHGT 123 (154)
Q Consensus 82 P~l~~~e~~~id~-~~~~~k~~~~~~~~d~~~~~~~~~~~~G~ 123 (154)
|++.+++. ++|+ +-.+ | ...+|...++.+...+++.
T Consensus 145 p~~~~~~~-~~~~~~~~~-k----~~~~~i~~~a~~~~n~~~~ 181 (186)
T KOG1725|consen 145 PFFLKHSR-EIDDIEDAN-K----QIKDDILTAAGEEENKKDA 181 (186)
T ss_pred hhhhhhhh-hhhhhhhcc-c----ccchhcccccchhhccccC
Confidence 99999986 4443 2111 1 2234555555555544444
No 3
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=99.96 E-value=7.6e-30 Score=181.56 Aligned_cols=83 Identities=41% Similarity=0.849 Sum_probs=80.9
Q ss_pred eeeeehHHHHHHHHhcCChhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCCcccchhHhHHhhhc
Q 031732 2 GCVIFNRHASIKAIEARSASDDQQWLTYWVLYSMITLFELTFAKVLELITIWPYAKLIFSCWLVLPQFNGAAYVYRHFVR 81 (154)
Q Consensus 2 i~~~YPay~S~kale~~~~~~~~~WL~YWvv~a~~~~~E~~~~~~l~wiP~Y~~~Kl~fl~wL~~P~~~GA~~iY~~~v~ 81 (154)
+|++||+|+|+|+++++++++.++||+||+++|+++++|.+++.+++|+|+|+++|+++++||.+|+++||+++|+++++
T Consensus 12 i~~~yP~~~s~kal~~~~~~~~~~wL~YWiv~~~~~~~e~~~~~~l~~iP~y~~~K~~~~~wL~~p~~~Ga~~iy~~~i~ 91 (94)
T PF03134_consen 12 IGILYPAYKSFKALKSKDKKDLKQWLTYWIVYGLFTLFESFLDFILSWIPFYYEFKLLFLVWLQLPQFQGAEYIYDKFIR 91 (94)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHcCCCCcHHHHHHHHcc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 031732 82 PFY 84 (154)
Q Consensus 82 P~l 84 (154)
|++
T Consensus 92 P~~ 94 (94)
T PF03134_consen 92 PFL 94 (94)
T ss_pred ccC
Confidence 975
No 4
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=99.84 E-value=1.6e-21 Score=153.25 Aligned_cols=92 Identities=23% Similarity=0.409 Sum_probs=86.5
Q ss_pred eeeeehHHHHHHHHhcCChhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCCcccchhHhHHhhhc
Q 031732 2 GCVIFNRHASIKAIEARSASDDQQWLTYWVLYSMITLFELTFAKVLELITIWPYAKLIFSCWLVLPQFNGAAYVYRHFVR 81 (154)
Q Consensus 2 i~~~YPay~S~kale~~~~~~~~~WL~YWvv~a~~~~~E~~~~~~l~wiP~Y~~~Kl~fl~wL~~P~~~GA~~iY~~~v~ 81 (154)
+++..|++.|.+++++.++.|++|||+||+|+|+.+++|..+..+++|+|+|+..|.+|++|+..|+|+||..+|+++++
T Consensus 66 ~~~~lP~~~~l~a~~~~n~~dd~q~l~ywmV~~~lsaie~~s~~il~~vP~Y~~~K~vFllw~~~prt~GA~~IY~~~i~ 145 (186)
T COG5052 66 AGFSLPAQLSLVAFYTLNFMDDTQLLTYWMVFGFLSAIEKYSGAILSKVPFYWTLKNVFLLWLLLPRTEGARIIYDDIIA 145 (186)
T ss_pred HHHHccHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccCceeeeHHhhcc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcCccchh
Q 031732 82 PFYMNPQSASSK 93 (154)
Q Consensus 82 P~l~~~e~~~id 93 (154)
|++.+|..++|+
T Consensus 146 p~~s~~~~~~Ie 157 (186)
T COG5052 146 PDVSDHGFRTIE 157 (186)
T ss_pred ccccHHHHHHHH
Confidence 999998864444
No 5
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=69.53 E-value=46 Score=27.54 Aligned_cols=70 Identities=7% Similarity=0.019 Sum_probs=64.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCCcccchhHhHHhhhcccccCcCc
Q 031732 20 ASDDQQWLTYWVLYSMITLFELTFAKVLELITIWPYAKLIFSCWLVLPQFNGAAYVYRHFVRPFYMNPQS 89 (154)
Q Consensus 20 ~~~~~~WL~YWvv~a~~~~~E~~~~~~l~wiP~Y~~~Kl~fl~wL~~P~~~GA~~iY~~~v~P~l~~~e~ 89 (154)
.+++..-+.+|....++..++.+....++|-+.+-.-+..+..|...|..+++...+..-..|....+..
T Consensus 96 ~E~eid~~l~~~k~~~~~~a~~~~~r~l~~~~~~~~~a~~~~~~~~tp~~~~~~~~~~~~~~~~~~~~~~ 165 (225)
T KOG1726|consen 96 HEEEIDRMLVEAKERVYDAAVSILKRALNYAQTYALEAAVFSQGQLTPRLQRSSSDQDLTTIPEESGKKA 165 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhhhhhhhcCcccccccc
Confidence 3566788999999999999999999999999999999999999999999999999999999998877664
No 6
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=54.90 E-value=24 Score=24.84 Aligned_cols=35 Identities=29% Similarity=0.483 Sum_probs=27.1
Q ss_pred HHHHHHHcHHHHHHHHHHHHhhhhhccCCCeeeecCC
Q 031732 115 EKYMQEHGTESFERLIAKTEREERSRKSNNYMIFDDD 151 (154)
Q Consensus 115 ~~~~~~~G~~af~kll~~~~~~~~~~~~~~~~~~~~~ 151 (154)
-++..-.|++-.|+++.++.+ +..|++ ++|-|||.
T Consensus 47 PkFLn~LGteIiEnAVefiLr-SMtR~t-gF~E~~dk 81 (88)
T PF15144_consen 47 PKFLNLLGTEIIENAVEFILR-SMTRST-GFMEFEDK 81 (88)
T ss_pred HHHHHHhhHHHHHHHHHHHHH-Hhhccc-CceecCCC
Confidence 345667899999999998887 455555 89999984
No 7
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=53.51 E-value=25 Score=33.57 Aligned_cols=59 Identities=17% Similarity=0.546 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHH-----------------------HHHHhcCCc----ccchhHh
Q 031732 24 QQWLTYWVLYSMITLFELTFAKVLE-LITIWPYAKLI-----------------------FSCWLVLPQ----FNGAAYV 75 (154)
Q Consensus 24 ~~WL~YWvv~a~~~~~E~~~~~~l~-wiP~Y~~~Kl~-----------------------fl~wL~~P~----~~GA~~i 75 (154)
-..+.+=++++++.+++.++++=+. ..|+|-+++.+ ++||+++|. |-|+.||
T Consensus 28 ~~~~~~~~~w~~~~~~d~~~~~r~e~~~p~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~p~~~~~~~~~~~v 107 (697)
T PF09726_consen 28 FLYVKFLLVWALVLLADFMLEFRFEYLWPFWLLLRSVYDSFKYQGLAFSVFFVCIAFTSDLICLFFIPVHWLFFAASTYV 107 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4566677777888888988876554 44998877643 357888885 7888888
Q ss_pred HHhhhcc
Q 031732 76 YRHFVRP 82 (154)
Q Consensus 76 Y~~~v~P 82 (154)
+-.+|..
T Consensus 108 ~~~~~~~ 114 (697)
T PF09726_consen 108 WVQYVWH 114 (697)
T ss_pred HHHHhhh
Confidence 7776654
No 8
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=28.58 E-value=79 Score=22.22 Aligned_cols=45 Identities=22% Similarity=0.266 Sum_probs=30.6
Q ss_pred hhhhhhhhh-hhhhchhHHHHHHHHHHHHHcHHHHHHHHHHHHhhhh
Q 031732 93 KIWYVPRKK-NIFRQQDDILTAAEKYMQEHGTESFERLIAKTEREER 138 (154)
Q Consensus 93 d~~~~~~k~-~~~~~~~d~~~~~~~~~~~~G~~af~kll~~~~~~~~ 138 (154)
++|+.+.|- .+-.+.-|.+....+.++++|- -||+|..+|.+.|.
T Consensus 35 ~~WLskeRgG~IP~~V~~sl~kL~~La~~N~v-~feeLc~YAL~~a~ 80 (82)
T PF11020_consen 35 ATWLSKERGGQIPEKVMDSLSKLYKLAKENNV-SFEELCVYALGVAQ 80 (82)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhc
Confidence 678776652 2334455667777777777776 48899988887764
No 9
>smart00648 SWAP Suppressor-of-White-APricot splicing regulator. domain present in regulators which are responsible for pre-mRNA splicing processes
Probab=26.68 E-value=88 Score=19.38 Aligned_cols=24 Identities=21% Similarity=0.512 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHcHHHHHHHHHH
Q 031732 109 DILTAAEKYMQEHGTESFERLIAK 132 (154)
Q Consensus 109 d~~~~~~~~~~~~G~~af~kll~~ 132 (154)
+++..+.+++.++|++.-+++++.
T Consensus 2 ~iI~~tA~~Va~~G~~fe~~l~~~ 25 (54)
T smart00648 2 DIIDKTAQFVARNGPEFEAKLMER 25 (54)
T ss_pred cHHHHHHHHHHHhhHHHHHHHHHh
Confidence 345677888999998755555544
No 10
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=24.26 E-value=1.1e+02 Score=23.32 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=24.1
Q ss_pred hHHHHHHHHH---HHHHcHHHHHHHHHHHHhhhhh
Q 031732 108 DDILTAAEKY---MQEHGTESFERLIAKTEREERS 139 (154)
Q Consensus 108 ~d~~~~~~~~---~~~~G~~af~kll~~~~~~~~~ 139 (154)
++++.++.+. ++-.||.-|..+|+.+.+.++.
T Consensus 67 ~gvl~~Y~~~~~~v~l~GPT~fapiI~~a~~~a~~ 101 (146)
T PF07002_consen 67 DGVLEAYRKALPKVQLSGPTNFAPIINHAAKIAKQ 101 (146)
T ss_pred HHHHHHHHHHhhheEECCCccHHHHHHHHHHHHhh
Confidence 4454544444 5559999999999999999983
No 11
>PF14975 DUF4512: Domain of unknown function (DUF4512)
Probab=22.49 E-value=32 Score=24.46 Aligned_cols=14 Identities=21% Similarity=0.911 Sum_probs=11.0
Q ss_pred hHhHHhhhcccccC
Q 031732 73 AYVYRHFVRPFYMN 86 (154)
Q Consensus 73 ~~iY~~~v~P~l~~ 86 (154)
.+||++||.|++-+
T Consensus 12 LwIykkFlqP~i~~ 25 (88)
T PF14975_consen 12 LWIYKKFLQPYIYP 25 (88)
T ss_pred HHHHHHHHHHHHHH
Confidence 36899999998744
No 12
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.24 E-value=79 Score=23.75 Aligned_cols=53 Identities=13% Similarity=0.321 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCCcccchhHhHH-----hhhcccccCc
Q 031732 30 WVLYSMITLFELTFAKVLELITIWPYAKLIFSCWLVLPQFNGAAYVYR-----HFVRPFYMNP 87 (154)
Q Consensus 30 Wvv~a~~~~~E~~~~~~l~wiP~Y~~~Kl~fl~wL~~P~~~GA~~iY~-----~~v~P~l~~~ 87 (154)
|++.|++++.=-+.+.++..+|-=+.+=+++.|+. +++...++ +...|++.+.
T Consensus 6 ~i~iGfl~l~LGIiGifLPlLPTTPFlLLaa~cFa-----RsSpRf~~WLl~~~~fg~~v~~~ 63 (119)
T COG2832 6 YIILGFLSLALGIIGIFLPLLPTTPFLLLAAACFA-----RSSPRFHAWLLRHKYFGPYVRDW 63 (119)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHH-----cCCcHHHHHHHcCchhhHHHHHH
Confidence 68889999988889999999998888877777774 44444444 4445555443
No 13
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=21.88 E-value=2.1e+02 Score=21.02 Aligned_cols=25 Identities=12% Similarity=0.323 Sum_probs=19.7
Q ss_pred HHhhhhhhhhHHHHHHHHHhcCCcc
Q 031732 45 KVLELITIWPYAKLIFSCWLVLPQF 69 (154)
Q Consensus 45 ~~l~wiP~Y~~~Kl~fl~wL~~P~~ 69 (154)
.++.+||..|+..++..+|.-.|-+
T Consensus 83 G~L~fIPG~Y~~~i~y~a~rg~~Gy 107 (115)
T PF05915_consen 83 GILCFIPGFYHTRIAYYAWRGYKGY 107 (115)
T ss_pred HHHHHhccHHHHHHHHHHHcCCCCC
Confidence 3567899999999999998766644
No 14
>PF02756 GYR: GYR motif; InterPro: IPR004011 The GYR motif is found in several Drosophila melanogaster proteins, in either single or multiple copies. Its function is unknown, however the presence of completely conserved tyrosine residues may suggest it could be a substrate for tyrosine kinases.
Probab=21.56 E-value=36 Score=17.25 Aligned_cols=6 Identities=83% Similarity=1.652 Sum_probs=4.7
Q ss_pred cCCCCC
Q 031732 149 DDDYRY 154 (154)
Q Consensus 149 ~~~~~~ 154 (154)
||.|||
T Consensus 1 ddGYrY 6 (18)
T PF02756_consen 1 DDGYRY 6 (18)
T ss_pred CCccee
Confidence 678887
No 15
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair]
Probab=20.94 E-value=2e+02 Score=22.02 Aligned_cols=47 Identities=17% Similarity=0.327 Sum_probs=28.5
Q ss_pred hHhHHhhhcccccCcCccchhhhhhhhhhhhhhchhHHHHHHHHHHHHHcHHHH-HHHHHHHH
Q 031732 73 AYVYRHFVRPFYMNPQSASSKIWYVPRKKNIFRQQDDILTAAEKYMQEHGTESF-ERLIAKTE 134 (154)
Q Consensus 73 ~~iY~~~v~P~l~~~e~~~id~~~~~~k~~~~~~~~d~~~~~~~~~~~~G~~af-~kll~~~~ 134 (154)
.=||+.+||-++..... .++.++-..+.+++..++|..+ +.++....
T Consensus 23 DAV~e~yVR~~~l~~g~---------------~k~~~lH~~a~~~VsAk~QA~il~~~~~~Lt 70 (132)
T COG1939 23 DAVYELYVREYLLLKGK---------------TKPNDLHKRATAYVSAKAQALILKALLEFLT 70 (132)
T ss_pred hHHHHHHHHHHHHhccc---------------CChHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 34778888887644331 3445666677777777777765 44444443
No 16
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=20.08 E-value=88 Score=18.84 Aligned_cols=13 Identities=8% Similarity=0.631 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHH
Q 031732 29 YWVLYSMITLFEL 41 (154)
Q Consensus 29 YWvv~a~~~~~E~ 41 (154)
=|++||+.+++=.
T Consensus 15 ~Wi~F~l~mi~vF 27 (38)
T PF09125_consen 15 GWIAFALAMILVF 27 (38)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3788888777644
Done!