Query 031732
Match_columns 154
No_of_seqs 170 out of 656
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 06:52:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031732.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031732hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2av4_A Thioredoxin-like protei 23.6 54 0.0018 24.5 2.8 29 123-154 127-160 (160)
2 2ywr_A Phosphoribosylglycinami 19.0 84 0.0029 24.0 3.2 72 65-137 112-189 (216)
3 2kl8_A OR15; structural genomi 17.7 85 0.0029 20.5 2.5 21 122-142 11-31 (85)
4 3kmi_A Putative membrane prote 16.0 1.1E+02 0.0038 22.8 3.2 59 93-152 7-73 (177)
5 1iie_A Protein (HLA-DR antigen 16.0 69 0.0024 21.2 1.7 13 23-35 48-60 (75)
6 2dt7_B Splicing factor 3 subun 14.4 2.1E+02 0.0071 18.9 3.9 25 108-132 32-56 (85)
7 4gc0_A D-xylose-proton symport 13.7 65 0.0022 25.9 1.4 13 60-72 457-469 (491)
8 3tvk_A DGC, diguanylate cyclas 13.4 1.5E+02 0.0052 21.6 3.3 19 132-150 146-164 (179)
9 3hva_A Protein FIMX; ggdef dig 12.8 1.4E+02 0.0047 20.5 2.8 21 131-151 157-177 (177)
10 2dt6_A Splicing factor 3 subun 12.7 2.1E+02 0.0072 17.5 3.3 24 108-131 4-27 (64)
No 1
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=23.61 E-value=54 Score=24.50 Aligned_cols=29 Identities=21% Similarity=0.528 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhhhhccC-----CCeeeecCCCCC
Q 031732 123 TESFERLIAKTEREERSRKS-----NNYMIFDDDYRY 154 (154)
Q Consensus 123 ~~af~kll~~~~~~~~~~~~-----~~~~~~~~~~~~ 154 (154)
.+.++++|+...+.|+++++ +.|++ +|||
T Consensus 127 k~~l~~~ie~~~r~a~~g~~~v~~p~~~~~---~~~~ 160 (160)
T 2av4_A 127 KQEFIDIVETIFRGARKGRGLVISPKDYST---KYKY 160 (160)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECSSCC---------
T ss_pred HHHHHHHHHHHHHHhhcCCeEEECCCccch---hccC
Confidence 34666777777777777666 66766 6665
No 2
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=18.98 E-value=84 Score=23.95 Aligned_cols=72 Identities=8% Similarity=-0.015 Sum_probs=44.0
Q ss_pred cCCcccchhHhHHhhhccc------ccCcCccchhhhhhhhhhhhhhchhHHHHHHHHHHHHHcHHHHHHHHHHHHhhh
Q 031732 65 VLPQFNGAAYVYRHFVRPF------YMNPQSASSKIWYVPRKKNIFRQQDDILTAAEKYMQEHGTESFERLIAKTEREE 137 (154)
Q Consensus 65 ~~P~~~GA~~iY~~~v~P~------l~~~e~~~id~~~~~~k~~~~~~~~d~~~~~~~~~~~~G~~af~kll~~~~~~~ 137 (154)
.+|.++|+.-+...+..-- +..-.. .+|..=.=.++.+--..+|......+++.+.|.+.+.+.++...+..
T Consensus 112 LLP~yrG~~pi~~ai~~G~~~tGvTvh~v~~-~~D~G~Ii~q~~~~i~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~ 189 (216)
T 2ywr_A 112 LIPAFQGLHAQKQAVEFGVKFSGCTVHIVDE-SVDAGPVIVQAVVPVLPEDDENTLADRILKWEHKILPQTVQWFAQDR 189 (216)
T ss_dssp CTTTTCSTTHHHHHHHHTCSEEEEEEEECCS-SSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCcCCCCccHHHHHHHcCCCeEEEEEEEEcc-cCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3688999988887776542 111111 23332111122222234567778888899999999999999887654
No 3
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=17.75 E-value=85 Score=20.47 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=17.4
Q ss_pred cHHHHHHHHHHHHhhhhhccC
Q 031732 122 GTESFERLIAKTEREERSRKS 142 (154)
Q Consensus 122 G~~af~kll~~~~~~~~~~~~ 142 (154)
..+||||.+....+|+++..+
T Consensus 11 dleafekalkemirqarkfag 31 (85)
T 2kl8_A 11 DLEAFEKALKEMIRQARKFAG 31 (85)
T ss_dssp SHHHHHHHHHHHHHHHTTTTC
T ss_pred cHHHHHHHHHHHHHHHHhhcc
Confidence 357999999999999987755
No 4
>3kmi_A Putative membrane protein COG4129; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.96A {Clostridium difficile}
Probab=16.03 E-value=1.1e+02 Score=22.79 Aligned_cols=59 Identities=12% Similarity=0.098 Sum_probs=36.0
Q ss_pred hhhhhhhhhhhhhchhHHHHHHHHHHHHHc--------HHHHHHHHHHHHhhhhhccCCCeeeecCCC
Q 031732 93 KIWYVPRKKNIFRQQDDILTAAEKYMQEHG--------TESFERLIAKTEREERSRKSNNYMIFDDDY 152 (154)
Q Consensus 93 d~~~~~~k~~~~~~~~d~~~~~~~~~~~~G--------~~af~kll~~~~~~~~~~~~~~~~~~~~~~ 152 (154)
+.-+.+.++++.....+++.....++...| -+.+++.|+.|.+-|..... |+..-+++|
T Consensus 7 e~~l~~~~~~IE~~~k~Il~~~a~~L~~~~~~~~~~~~~~~l~~~i~~a~~~A~~~~~-N~l~~~~~y 73 (177)
T 3kmi_A 7 IHKIHEVQKKLQEEVSIVLIDIADIIVNPKKENGYSRDLYTLNSLIDSSISETYDNIN-NTLLSDTRF 73 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCSHHHHHHHHHHHHHHHHHHHHHTGG-GSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHHHHHHHHHHHhcC-CCcccCchH
Confidence 334444555666677777777777772221 22556777777777777766 666555544
No 5
>1iie_A Protein (HLA-DR antigens associated invariant chain); major histocompatibility complex, antigen processing, oligomerization, chaperonin; NMR {Homo sapiens} SCOP: a.109.1.1
Probab=15.98 E-value=69 Score=21.18 Aligned_cols=13 Identities=31% Similarity=1.063 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHH
Q 031732 23 DQQWLTYWVLYSM 35 (154)
Q Consensus 23 ~~~WL~YWvv~a~ 35 (154)
...|+.+|.+|-+
T Consensus 48 FEsWM~~WLLFeM 60 (75)
T 1iie_A 48 FESWMHHWLLFEM 60 (75)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4789999998854
No 6
>2dt7_B Splicing factor 3 subunit 1; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=14.41 E-value=2.1e+02 Score=18.89 Aligned_cols=25 Identities=16% Similarity=0.440 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHcHHHHHHHHHH
Q 031732 108 DDILTAAEKYMQEHGTESFERLIAK 132 (154)
Q Consensus 108 ~d~~~~~~~~~~~~G~~af~kll~~ 132 (154)
-|++....+++.++|.+-...+.++
T Consensus 32 l~iIk~TA~FVArnG~~Fe~~l~~r 56 (85)
T 2dt7_B 32 LDVVKLTAQFVARNGRQFLTQLMQK 56 (85)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHh
Confidence 4888999999999999655555543
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=13.71 E-value=65 Score=25.88 Aligned_cols=13 Identities=23% Similarity=0.677 Sum_probs=10.1
Q ss_pred HHHHhcCCcccch
Q 031732 60 FSCWLVLPQFNGA 72 (154)
Q Consensus 60 fl~wL~~P~~~GA 72 (154)
+++|+.+|.|+|=
T Consensus 457 i~~~~~~PETkg~ 469 (491)
T 4gc0_A 457 LFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHCCCCTTC
T ss_pred HHHHheecCCCCC
Confidence 3467889999984
No 8
>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli}
Probab=13.38 E-value=1.5e+02 Score=21.59 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=13.5
Q ss_pred HHHhhhhhccCCCeeeecC
Q 031732 132 KTEREERSRKSNNYMIFDD 150 (154)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~ 150 (154)
.|-.+||.++.|.+..||+
T Consensus 146 ~Aly~AK~~Grn~~~~~~~ 164 (179)
T 3tvk_A 146 RAMYEGKQTGRNRCMFIDE 164 (179)
T ss_dssp HHHHHHHHTTSSEEEEECT
T ss_pred HHHHHHHHhCCCEEEEECH
Confidence 3445677776778999986
No 9
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=12.84 E-value=1.4e+02 Score=20.46 Aligned_cols=21 Identities=0% Similarity=0.143 Sum_probs=11.7
Q ss_pred HHHHhhhhhccCCCeeeecCC
Q 031732 131 AKTEREERSRKSNNYMIFDDD 151 (154)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~ 151 (154)
..|..++|.++.|.+..||++
T Consensus 157 ~~Al~~ak~~g~~~~~~y~~~ 177 (177)
T 3hva_A 157 HRCADDAARKGGSQIKQYNPA 177 (177)
T ss_dssp HHHHHHHHTTCSSEEEC----
T ss_pred HHHHHHHHHhCCCeEEEeCCC
Confidence 335556777777788988864
No 10
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=12.74 E-value=2.1e+02 Score=17.52 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHcHHHHHHHHH
Q 031732 108 DDILTAAEKYMQEHGTESFERLIA 131 (154)
Q Consensus 108 ~d~~~~~~~~~~~~G~~af~kll~ 131 (154)
.+++....+++.++|++--..+++
T Consensus 4 ~~iI~ktA~fVarnG~~fE~~l~~ 27 (64)
T 2dt6_A 4 RNIVDKTASFVARNGPEFEARIRQ 27 (64)
T ss_dssp HHHHHHHHHHHHHHCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHH
Confidence 356678888999999865444444
Done!