Query 031732
Match_columns 154
No_of_seqs 170 out of 656
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 06:52:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031732.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031732hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dt7b1 a.217.1.1 (B:134-217) 17.4 65 0.0048 19.6 3.6 25 108-132 31-55 (84)
2 d2j5ya1 a.8.1.2 (A:1-53) PAB { 17.2 49 0.0036 18.8 2.6 33 91-133 1-35 (53)
3 d1iiea_ a.109.1.1 (A:) Class I 17.0 29 0.0021 21.4 1.7 14 22-35 47-60 (75)
4 d1nekd_ f.21.2.2 (D:) Succinat 14.9 20 0.0015 23.0 0.5 56 27-82 27-84 (113)
5 d1a87a_ f.1.1.1 (A:) Colicin N 11.6 41 0.003 25.8 1.5 64 76-144 83-146 (297)
6 d1meoa_ c.65.1.1 (A:) Glycinam 11.0 1E+02 0.0076 21.2 3.6 82 66-148 112-199 (205)
7 d1x4oa1 a.217.1.1 (A:8-72) Spl 10.9 1E+02 0.0073 17.6 2.9 24 107-131 10-33 (65)
8 d1m56d_ f.23.8.1 (D:) Bacteria 9.9 1.4E+02 0.01 16.0 3.5 28 38-65 11-38 (42)
9 d1dgna_ a.77.1.3 (A:) Iceberg 9.6 1.8E+02 0.013 17.0 4.2 28 109-136 51-78 (89)
10 d2dt6a1 a.217.1.1 (A:48-110) S 9.4 1.5E+02 0.011 16.7 3.3 22 109-131 4-25 (63)
No 1
>d2dt7b1 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.43 E-value=65 Score=19.62 Aligned_cols=25 Identities=16% Similarity=0.440 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHcHHHHHHHHHH
Q 031732 108 DDILTAAEKYMQEHGTESFERLIAK 132 (154)
Q Consensus 108 ~d~~~~~~~~~~~~G~~af~kll~~ 132 (154)
.|++....+++.++|.+--..++++
T Consensus 31 l~iI~~tA~fVa~~G~~fe~~l~~~ 55 (84)
T d2dt7b1 31 LDVVKLTAQFVARNGRQFLTQLMQK 55 (84)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHc
Confidence 4788999999999999744444443
No 2
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId: 1260]}
Probab=17.24 E-value=49 Score=18.80 Aligned_cols=33 Identities=15% Similarity=0.265 Sum_probs=18.2
Q ss_pred chhhhhhhhhhhhhhchhHHHHHHHHHHHHHcH--HHHHHHHHHH
Q 031732 91 SSKIWYVPRKKNIFRQQDDILTAAEKYMQEHGT--ESFERLIAKT 133 (154)
Q Consensus 91 ~id~~~~~~k~~~~~~~~d~~~~~~~~~~~~G~--~af~kll~~~ 133 (154)
+||.|+...- -..+-...+++|- +.+..+|+.+
T Consensus 1 tid~~~Lk~A----------Ke~AI~eLK~~GIts~~y~~~Inka 35 (53)
T d2j5ya1 1 TIDQWLLKNA----------KEDAIAELKKAGITSDFYFNAINKA 35 (53)
T ss_dssp CHHHHHHHHH----------HHHHHHHHHHTTCCCHHHHHHHHHC
T ss_pred ChhHHHHHHH----------HHHHHHHHHHcCccHHHHHHHHHhh
Confidence 4677765422 2344445666663 5666666654
No 3
>d1iiea_ a.109.1.1 (A:) Class II MHC-associated invariant chain ectoplasmic trimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.00 E-value=29 Score=21.39 Aligned_cols=14 Identities=29% Similarity=0.918 Sum_probs=11.1
Q ss_pred hhhhHHHHHHHHHH
Q 031732 22 DDQQWLTYWVLYSM 35 (154)
Q Consensus 22 ~~~~WL~YWvv~a~ 35 (154)
....|+.+|.+|-+
T Consensus 47 ~FEsWM~~WLlFeM 60 (75)
T d1iiea_ 47 VFESWMHHWLLFEM 60 (75)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35789999998754
No 4
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=14.88 E-value=20 Score=23.05 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh--hhhhHHHHHHHHHhcCCcccchhHhHHhhhcc
Q 031732 27 LTYWVLYSMITLFELTFAKVLELI--TIWPYAKLIFSCWLVLPQFNGAAYVYRHFVRP 82 (154)
Q Consensus 27 L~YWvv~a~~~~~E~~~~~~l~wi--P~Y~~~Kl~fl~wL~~P~~~GA~~iY~~~v~P 82 (154)
+.-|.++.+....+.-.+.+..|+ |.-..+=+++++-+......|-..|-+.+++|
T Consensus 27 l~~~~~~~~~~~~~~~y~~~~~~~~~~~~~il~~l~l~~~~~H~~lGl~~IieDYi~~ 84 (113)
T d1nekd_ 27 YIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKP 84 (113)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhHhhhHHHhcCC
Confidence 445666666555443344455555 66666666777777777788998888888876
No 5
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Probab=11.59 E-value=41 Score=25.76 Aligned_cols=64 Identities=9% Similarity=0.227 Sum_probs=40.8
Q ss_pred HHhhhcccccCcCccchhhhhhhhhhhhhhchhHHHHHHHHHHHHHcHHHHHHHHHHHHhhhhhccCCC
Q 031732 76 YRHFVRPFYMNPQSASSKIWYVPRKKNIFRQQDDILTAAEKYMQEHGTESFERLIAKTEREERSRKSNN 144 (154)
Q Consensus 76 Y~~~v~P~l~~~e~~~id~~~~~~k~~~~~~~~d~~~~~~~~~~~~G~~af~kll~~~~~~~~~~~~~~ 144 (154)
-.++|.||+.-.+. +=+ +..++......++....-+.+.|+=-+...++-+.++.++|..++++
T Consensus 83 vk~~v~~f~~~~ke-e~~----~~Ek~alkdAve~ia~~~kkIsEk~G~Kyk~lA~eLA~~aKnfqGKk 146 (297)
T d1a87a_ 83 VKRFVSQFLLFRKE-EKE----KNEKEALLKASELVSGMGDKLGEYLGVKYKNVAKEVANDIKNFHGRN 146 (297)
T ss_dssp HHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTCCGGG
T ss_pred HHHHHHHHHHHhHH-HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Confidence 46788888832221 100 00123345556777777777878777888999999999988555543
No 6
>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.98 E-value=1e+02 Score=21.25 Aligned_cols=82 Identities=9% Similarity=0.068 Sum_probs=46.9
Q ss_pred CCcccchhHhHHhhhccc------ccCcCccchhhhhhhhhhhhhhchhHHHHHHHHHHHHHcHHHHHHHHHHHHhhhhh
Q 031732 66 LPQFNGAAYVYRHFVRPF------YMNPQSASSKIWYVPRKKNIFRQQDDILTAAEKYMQEHGTESFERLIAKTEREERS 139 (154)
Q Consensus 66 ~P~~~GA~~iY~~~v~P~------l~~~e~~~id~~~~~~k~~~~~~~~d~~~~~~~~~~~~G~~af~kll~~~~~~~~~ 139 (154)
+|.++|+.-+...++.-- +..-.. .+|..=.=.++.+.-..+|......+++.+.+.+.+.+.++...+..-.
T Consensus 112 LP~~rG~~~~~~ai~~g~~~~G~tih~v~~-~iD~G~Ii~q~~~~I~~~dt~~~L~~k~~~~~~~l~~~~l~~i~~g~i~ 190 (205)
T d1meoa_ 112 LPSFKGSNAHEQALETGVTVTGCTVHFVAE-DVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQ 190 (205)
T ss_dssp TTSSCSSCHHHHHHHHTCSEEEEEEEECCC----CCCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred cchhhhhhhHHHHHhcCCcccceeEEeecC-CCCCCcEeEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcE
Confidence 588999987777665421 111111 2333211122222223457777788889999999999999988776543
Q ss_pred ccCCCeeee
Q 031732 140 RKSNNYMIF 148 (154)
Q Consensus 140 ~~~~~~~~~ 148 (154)
...|+-..|
T Consensus 191 ~~~~~~i~~ 199 (205)
T d1meoa_ 191 LGENGKICW 199 (205)
T ss_dssp ECTTSSEEE
T ss_pred ECCCCeEEe
Confidence 334444444
No 7
>d1x4oa1 a.217.1.1 (A:8-72) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.92 E-value=1e+02 Score=17.62 Aligned_cols=24 Identities=13% Similarity=0.396 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHcHHHHHHHHH
Q 031732 107 QDDILTAAEKYMQEHGTESFERLIA 131 (154)
Q Consensus 107 ~~d~~~~~~~~~~~~G~~af~kll~ 131 (154)
+.+++....+++.++|++ ||+.|.
T Consensus 10 ~~~iI~~tA~~Vak~G~~-fE~~l~ 33 (65)
T d1x4oa1 10 AKNLAEKLARFIADGGPE-VETIAL 33 (65)
T ss_dssp HHHHHHHHHHHHHHSCTT-HHHHHH
T ss_pred HHHHHHHHHHHHHHccHH-HHHHHH
Confidence 346677888899999987 666664
No 8
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=9.90 E-value=1.4e+02 Score=16.04 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHhc
Q 031732 38 LFELTFAKVLELITIWPYAKLIFSCWLV 65 (154)
Q Consensus 38 ~~E~~~~~~l~wiP~Y~~~Kl~fl~wL~ 65 (154)
.-|-.++.++.|.-.-..+-++++++|.
T Consensus 11 vQEKTF~gFik~~t~~~i~~i~~liflA 38 (42)
T d1m56d_ 11 QQEKTFAGFVRMVTWAAVVIVAALIFLA 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666654
No 9
>d1dgna_ a.77.1.3 (A:) Iceberg {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.59 E-value=1.8e+02 Score=17.01 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHcHHHHHHHHHHHHhh
Q 031732 109 DILTAAEKYMQEHGTESFERLIAKTERE 136 (154)
Q Consensus 109 d~~~~~~~~~~~~G~~af~kll~~~~~~ 136 (154)
|-....-..+...|+.||...++++.+.
T Consensus 51 ~k~r~LLd~l~~kG~~a~~~F~~aL~~~ 78 (89)
T d1dgna_ 51 DKARVLIDLVTGKGPKSCCKFIKHLCEE 78 (89)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 3344444567889999999999988874
No 10
>d2dt6a1 a.217.1.1 (A:48-110) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.37 E-value=1.5e+02 Score=16.73 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHcHHHHHHHHH
Q 031732 109 DILTAAEKYMQEHGTESFERLIA 131 (154)
Q Consensus 109 d~~~~~~~~~~~~G~~af~kll~ 131 (154)
.++....+++.++|++ ||..|.
T Consensus 4 ~iI~~tA~fVak~G~~-fE~~l~ 25 (63)
T d2dt6a1 4 NIVDKTASFVARNGPE-FEARIR 25 (63)
T ss_dssp HHHHHHHHHHHHHCTH-HHHHHH
T ss_pred HHHHHHHHHHHHhcHH-HHHHHH
Confidence 4556778899999997 665555
Done!