Query 031735
Match_columns 153
No_of_seqs 110 out of 341
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 04:38:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3106 ER lumen protein retai 100.0 3.1E-66 6.7E-71 414.5 8.0 150 1-153 63-212 (212)
2 COG5196 ERD2 ER lumen protein 100.0 3.6E-57 7.9E-62 358.0 8.9 151 1-153 64-214 (214)
3 PF00810 ER_lumen_recept: ER l 100.0 5.2E-47 1.1E-51 293.5 8.7 108 1-110 38-147 (147)
4 PF04193 PQ-loop: PQ loop repe 95.1 0.15 3.2E-06 32.9 6.7 54 56-109 2-55 (61)
5 PHA02246 hypothetical protein 76.3 37 0.00079 27.4 9.2 92 30-131 87-178 (192)
6 TIGR00951 2A43 Lysosomal Cysti 75.6 11 0.00024 30.9 6.4 46 64-109 12-64 (220)
7 smart00679 CTNS Repeated motif 71.2 3.7 8E-05 23.0 1.9 26 69-94 1-26 (32)
8 COG4095 Uncharacterized conser 47.3 1.1E+02 0.0023 22.2 8.2 44 61-104 10-53 (89)
9 PF02790 COX2_TM: Cytochrome C 23.4 25 0.00054 23.5 -0.2 15 37-51 66-80 (84)
10 KOG2913 Predicted membrane pro 19.2 84 0.0018 26.6 2.1 79 61-142 171-249 (260)
No 1
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-66 Score=414.49 Aligned_cols=150 Identities=50% Similarity=0.929 Sum_probs=147.6
Q ss_pred CeeehhhHHHHHHHHHhcccccccccccccCcceeehhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHHH
Q 031735 1 MKLVFIGTSIAIVWYMRYHKVVKQTYNQDEDTFKHYFLILPSFVLALLIPHAFNSVEILWTFSIYLEAVAILPQLVLLQR 80 (153)
Q Consensus 1 mKi~~i~~s~~iiyli~~~~~~~~Tyd~~~Dtf~~~~li~p~~vLali~~~~~~~~eilWtFSiyLEsvAILPQL~mlqk 80 (153)
||++||++|.+++|+|++ |+|+|||+|+|||+++|+++||++||+++||++++.|++||||+|||||||||||+|+||
T Consensus 63 mki~fl~~t~~ivymi~~--k~~~tYd~~~DtFri~~llvp~~vlsl~i~~~~t~~eilWtFsiyLEsVaILPQL~~lq~ 140 (212)
T KOG3106|consen 63 MKIAFLASTLWIVYMIRF--KLRATYDKEKDTFRIEYLLVPSAVLSLLINHSFTILEILWTFSIYLESVAILPQLFMLQK 140 (212)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHhcccCceeEEEEehhheeeeeeecCCccHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 899999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCcccchhHHHHHHHHHHHHHHHHhhhhhhhhcCCccchhhhhHHHHHHHHHhhhheeeEeeeecCccccCCC
Q 031735 81 SRNIDNLTGNYVFLLGAYRALYILNWAYRFYVEDHKVRWIPWLSGLAQTALYADFFYYYIKSWKNRELLKLPA 153 (153)
Q Consensus 81 ~~~ve~lts~Yv~~LG~yR~ly~~nWi~ry~~~~~~~~~~~~~~givQt~ly~DFfy~Y~~~~~~G~~~~lp~ 153 (153)
+||+|++|+||+||||+||++|++|||+|+.+|+.+ |++++++|++||++||||||+|++++++|+|++||+
T Consensus 141 tg~~E~~TahYvfaLG~yR~ly~~~WI~r~~~e~~~-~~iai~agiVQT~ly~DFfy~Y~~~v~~g~~~~LP~ 212 (212)
T KOG3106|consen 141 TGEAETITAHYLFALGLYRALYIANWIYRYVTEDFW-DPIAIVAGIVQTVLYADFFYLYVTKVLQGKKLKLPA 212 (212)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhHHHHHHHHHHcCCcCCCCC
Confidence 999999999999999999999999999999999855 999999999999999999999999999999999995
No 2
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.6e-57 Score=358.01 Aligned_cols=151 Identities=40% Similarity=0.697 Sum_probs=147.6
Q ss_pred CeeehhhHHHHHHHHHhcccccccccccccCcceeehhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHHH
Q 031735 1 MKLVFIGTSIAIVWYMRYHKVVKQTYNQDEDTFKHYFLILPSFVLALLIPHAFNSVEILWTFSIYLEAVAILPQLVLLQR 80 (153)
Q Consensus 1 mKi~~i~~s~~iiyli~~~~~~~~Tyd~~~Dtf~~~~li~p~~vLali~~~~~~~~eilWtFSiyLEsvAILPQL~mlqk 80 (153)
||++||+++.+|+++|++ ++|+||||..|||+++++++||+|+|+++|++.++.+++||||+|||||||||||+|+||
T Consensus 64 Mki~FI~s~~yI~~lm~~--~~r~tYdk~lDtF~i~~ll~gsav~slff~~~~tisnvlwtfS~wLESVAILPQL~mLq~ 141 (214)
T COG5196 64 MKILFIGSQVYILFLMRF--KYRSTYDKKLDTFNILTLLVGSAVFSLFFTRGGTISNVLWTFSLWLESVAILPQLVMLQE 141 (214)
T ss_pred HHHHHHHHHHHHHHHHHh--cccchHHHhhhhhhhhhhhhhhhhheeeecCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCcccchhHHHHHHHHHHHHHHHHhhhhhhhhcCCccchhhhhHHHHHHHHHhhhheeeEeeeecCccccCCC
Q 031735 81 SRNIDNLTGNYVFLLGAYRALYILNWAYRFYVEDHKVRWIPWLSGLAQTALYADFFYYYIKSWKNRELLKLPA 153 (153)
Q Consensus 81 ~~~ve~lts~Yv~~LG~yR~ly~~nWi~ry~~~~~~~~~~~~~~givQt~ly~DFfy~Y~~~~~~G~~~~lp~ 153 (153)
.||.|++|+||+++||+||++|++|||+|+..+.+..+.+++.+|++||++|.|||+.|++.|.+|++++||.
T Consensus 142 ~GeteslT~hYvfamgLYRalYip~wI~r~~~~~kk~~~iai~aGivQTlLY~DFf~iYyr~V~rGk~f~LP~ 214 (214)
T COG5196 142 AGETESLTSHYVFAMGLYRALYIPYWILRKVYDIKKTGNIAIAAGIVQTLLYLDFFAIYYRYVFRGKSFSLPS 214 (214)
T ss_pred cCCcceeHHHHHHHHHHHHHhhhhHHHHHhhhcccccccchhHHHHHHHHHHHHhHHhhhhhhhcccccCCCC
Confidence 9999999999999999999999999999999886556899999999999999999999999999999999995
No 3
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=100.00 E-value=5.2e-47 Score=293.46 Aligned_cols=108 Identities=55% Similarity=1.009 Sum_probs=105.1
Q ss_pred CeeehhhHHHHHHHHHhcccccccccccccCcceeehhHHHHHHHHHhcC--CCCchhHHHHHHHHHHHHHHhHHHHHHH
Q 031735 1 MKLVFIGTSIAIVWYMRYHKVVKQTYNQDEDTFKHYFLILPSFVLALLIP--HAFNSVEILWTFSIYLEAVAILPQLVLL 78 (153)
Q Consensus 1 mKi~~i~~s~~iiyli~~~~~~~~Tyd~~~Dtf~~~~li~p~~vLali~~--~~~~~~eilWtFSiyLEsvAILPQL~ml 78 (153)
||++++++|++++|+|+. |||+|||+++|+|++.++++||++||+++| +++++.|++||||+|||||||+|||+|+
T Consensus 38 ~k~~~i~~s~~iiyli~~--~~~~Ty~~~~D~f~~~~li~p~~vLa~i~~p~~~~~~~ei~wtfSi~LEsvAIlPQL~m~ 115 (147)
T PF00810_consen 38 MKVFFIVSSLYIIYLIFF--KYKSTYDKEIDTFRLEYLIVPCFVLALIFHPLNSFFFLEILWTFSIYLESVAILPQLFML 115 (147)
T ss_pred HHHHHHHHHHHHHHhhhe--eehhhhhccccchhhhHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 799999999999999988 999999999999999999999999999999 5567999999999999999999999999
Q ss_pred HHhCcccchhHHHHHHHHHHHHHHHHhhhhhh
Q 031735 79 QRSRNIDNLTGNYVFLLGAYRALYILNWAYRF 110 (153)
Q Consensus 79 qk~~~ve~lts~Yv~~LG~yR~ly~~nWi~ry 110 (153)
||+||+|++|+||+++||+||++|++|||+||
T Consensus 116 ~k~~~ve~ltshYv~~Lg~yR~ly~~~Wi~rY 147 (147)
T PF00810_consen 116 QKTGEVENLTSHYVFALGLYRALYLLNWIYRY 147 (147)
T ss_pred HHhcCeeehHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999997
No 4
>PF04193 PQ-loop: PQ loop repeat
Probab=95.09 E-value=0.15 Score=32.93 Aligned_cols=54 Identities=22% Similarity=0.260 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhhhh
Q 031735 56 VEILWTFSIYLEAVAILPQLVLLQRSRNIDNLTGNYVFLLGAYRALYILNWAYR 109 (153)
Q Consensus 56 ~eilWtFSiyLEsvAILPQL~mlqk~~~ve~lts~Yv~~LG~yR~ly~~nWi~r 109 (153)
.+++...+.-+.+++-+||+....|++.++.+..-++.......++.+++.+..
T Consensus 2 ~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~ 55 (61)
T PF04193_consen 2 SNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILS 55 (61)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 467888999999999999999999999999999999998888888888877654
No 5
>PHA02246 hypothetical protein
Probab=76.33 E-value=37 Score=27.39 Aligned_cols=92 Identities=18% Similarity=0.227 Sum_probs=54.2
Q ss_pred cCcceeehhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhhhh
Q 031735 30 EDTFKHYFLILPSFVLALLIPHAFNSVEILWTFSIYLEAVAILPQLVLLQRSRNIDNLTGNYVFLLGAYRALYILNWAYR 109 (153)
Q Consensus 30 ~Dtf~~~~li~p~~vLali~~~~~~~~eilWtFSiyLEsvAILPQL~mlqk~~~ve~lts~Yv~~LG~yR~ly~~nWi~r 109 (153)
+|-|...++++-|+.+-++ .+...+.+..=+-|+. .|-.||...+.|++..|....-.-..+|..-++=..|-..
T Consensus 87 kd~f~~~fiiifSLllfll-~~~~evtQtVat~tIi---LaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~L- 161 (192)
T PHA02246 87 KDYFSIPFIIVFSLLLFLL-SDFTALTQTVATITII---LAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVL- 161 (192)
T ss_pred cccccchHHHHHHHHHHHH-hhhHHHHHHHHHHHHH---HHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhh-
Confidence 4667666666655554332 2222344555555554 5789999999999999987766555555554443333221
Q ss_pred hhhcCCccchhhhhHHHHHHHH
Q 031735 110 FYVEDHKVRWIPWLSGLAQTAL 131 (153)
Q Consensus 110 y~~~~~~~~~~~~~~givQt~l 131 (153)
.+ ....-++++++..++
T Consensus 162 ----th-v~~hIiiTEf~N~iL 178 (192)
T PHA02246 162 ----TH-TYVHIIATEFVNFVL 178 (192)
T ss_pred ----hC-CcceeeHHHHHHHHH
Confidence 11 234556778777754
No 6
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=75.60 E-value=11 Score=30.85 Aligned_cols=46 Identities=15% Similarity=0.353 Sum_probs=33.0
Q ss_pred HHHHHHHhHHHHHHHHHhCcccchhHHHHH-------HHHHHHHHHHHhhhhh
Q 031735 64 IYLEAVAILPQLVLLQRSRNIDNLTGNYVF-------LLGAYRALYILNWAYR 109 (153)
Q Consensus 64 iyLEsvAILPQL~mlqk~~~ve~lts~Yv~-------~LG~yR~ly~~nWi~r 109 (153)
.-.=+++-+||+....|++.+|.+.-.++. +.+.|-..-..+|-.+
T Consensus 12 ~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~ 64 (220)
T TIGR00951 12 VAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSIT 64 (220)
T ss_pred HHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 333466789999999999999999888887 4445555445555555
No 7
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=71.18 E-value=3.7 Score=23.00 Aligned_cols=26 Identities=31% Similarity=0.562 Sum_probs=21.2
Q ss_pred HHhHHHHHHHHHhCcccchhHHHHHH
Q 031735 69 VAILPQLVLLQRSRNIDNLTGNYVFL 94 (153)
Q Consensus 69 vAILPQL~mlqk~~~ve~lts~Yv~~ 94 (153)
++-+||.....|++.++.+-.-+++.
T Consensus 1 ~~~~PQi~~~~~~ks~~glS~~~~~l 26 (32)
T smart00679 1 VSLLPQIIKNYRRKSTEGLSILFVLL 26 (32)
T ss_pred CcchhHHHHHHHcCCcCcCCHHHHHH
Confidence 35789999999999999887666653
No 8
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=47.27 E-value=1.1e+02 Score=22.20 Aligned_cols=44 Identities=23% Similarity=0.392 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHH
Q 031735 61 TFSIYLEAVAILPQLVLLQRSRNIDNLTGNYVFLLGAYRALYIL 104 (153)
Q Consensus 61 tFSiyLEsvAILPQL~mlqk~~~ve~lts~Yv~~LG~yR~ly~~ 104 (153)
+.+--+-.+|.+||+.-.-|+++..+++--....+...+++.++
T Consensus 10 ~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwli 53 (89)
T COG4095 10 TIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLI 53 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHH
Confidence 34444668899999999999999999998888888888888554
No 9
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=23.43 E-value=25 Score=23.54 Aligned_cols=15 Identities=27% Similarity=0.556 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHhcCC
Q 031735 37 FLILPSFVLALLIPH 51 (153)
Q Consensus 37 ~li~p~~vLali~~~ 51 (153)
+-++|+++|..+.-|
T Consensus 66 WTiiP~iiLl~l~~p 80 (84)
T PF02790_consen 66 WTIIPAIILLFLAFP 80 (84)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhh
Confidence 567777766655443
No 10
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=19.22 E-value=84 Score=26.65 Aligned_cols=79 Identities=18% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhhhhhhhcCCccchhhhhHHHHHHHHHhhhheeeE
Q 031735 61 TFSIYLEAVAILPQLVLLQRSRNIDNLTGNYVFLLGAYRALYILNWAYRFYVEDHKVRWIPWLSGLAQTALYADFFYYYI 140 (153)
Q Consensus 61 tFSiyLEsvAILPQL~mlqk~~~ve~lts~Yv~~LG~yR~ly~~nWi~ry~~~~~~~~~~~~~~givQt~ly~DFfy~Y~ 140 (153)
..|--++..+.+||..+-.+.+.+|.++--.-+...+....|... .+...+-.+..-+.-+-..-.....+||+++.
T Consensus 171 ~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n~~y~~s---~~~~~n~~w~~~~~~~~~~D~~~~~q~~~~~~ 247 (260)
T KOG2913|consen 171 SLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGNTTYILS---SYLVTNLPWLVDSKGTIYLDIFIFLQFFNYRA 247 (260)
T ss_pred HHHHHHHcccccchhhhhhccCccchhHHHHHHHHHccccccccc---cccccCCcccccCCcchhHHHHHHHHHHHhhc
Q ss_pred ee
Q 031735 141 KS 142 (153)
Q Consensus 141 ~~ 142 (153)
.+
T Consensus 248 ~~ 249 (260)
T KOG2913|consen 248 SK 249 (260)
T ss_pred cc
Done!