Query 031735
Match_columns 153
No_of_seqs 110 out of 341
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 06:56:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031735.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031735hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fm8_C Cell invasion protein S 13.8 76 0.0026 25.4 1.7 14 63-76 219-232 (240)
2 2fm9_A Cell invasion protein S 13.2 66 0.0023 25.4 1.2 12 65-76 195-206 (215)
3 1v54_B Cytochrome C oxidase po 11.7 57 0.002 25.7 0.4 12 37-48 65-76 (227)
4 3b0b_C CENP-X, centromere prot 10.8 89 0.003 20.9 1.1 7 71-77 72-78 (81)
5 4dra_E Centromere protein X; D 10.2 97 0.0033 21.0 1.1 7 71-77 76-82 (84)
6 2gsm_B Cytochrome C oxidase su 9.0 71 0.0024 25.6 0.0 12 37-48 79-90 (262)
7 1nig_A Hypothetical protein TA 7.4 4.3E+02 0.015 19.5 3.7 32 86-118 94-125 (152)
8 2yev_B Cytochrome C oxidase su 9.7 96 0.0033 25.5 0.0 19 35-53 85-103 (337)
9 3hb3_B Cytochrome C oxidase su 6.3 1.1E+02 0.0038 25.1 0.0 12 37-48 110-121 (298)
10 2k37_A Chlorosome protein A; b 6.2 1.5E+02 0.005 19.0 0.5 11 60-70 27-37 (59)
No 1
>2fm8_C Cell invasion protein SIPA; type III secretion, chaperone, translocation, protein foldin virulence, bacterial, chaperone-cell invasion C; 2.20A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=13.83 E-value=76 Score=25.38 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=11.1
Q ss_pred HHHHHHHHhHHHHH
Q 031735 63 SIYLEAVAILPQLV 76 (153)
Q Consensus 63 SiyLEsvAILPQL~ 76 (153)
|==||.+|++|||.
T Consensus 219 aR~Le~~AviP~LL 232 (240)
T 2fm8_C 219 ARHLEMQTLIPLLL 232 (240)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHH
Confidence 34589999999974
No 2
>2fm9_A Cell invasion protein SIPA; type II secretion, virulence, bacterial, C invasion; 2.00A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=13.17 E-value=66 Score=25.37 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=10.0
Q ss_pred HHHHHHhHHHHH
Q 031735 65 YLEAVAILPQLV 76 (153)
Q Consensus 65 yLEsvAILPQL~ 76 (153)
=||.+|++|||.
T Consensus 195 ~L~~~av~P~LL 206 (215)
T 2fm9_A 195 HLEMQTLIPLLL 206 (215)
T ss_dssp CCHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 478999999974
No 3
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=11.73 E-value=57 Score=25.65 Aligned_cols=12 Identities=42% Similarity=0.919 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHh
Q 031735 37 FLILPSFVLALL 48 (153)
Q Consensus 37 ~li~p~~vLali 48 (153)
+.++|+++|..+
T Consensus 65 WTiiP~iil~~l 76 (227)
T 1v54_B 65 WTILPAIILILI 76 (227)
T ss_dssp HHHHHHHHHHHH
T ss_pred eehHHHHHHHHH
Confidence 445555555443
No 4
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=10.84 E-value=89 Score=20.94 Aligned_cols=7 Identities=71% Similarity=1.293 Sum_probs=4.4
Q ss_pred hHHHHHH
Q 031735 71 ILPQLVL 77 (153)
Q Consensus 71 ILPQL~m 77 (153)
|+|||.|
T Consensus 72 i~pqLlL 78 (81)
T 3b0b_C 72 VLPQLLL 78 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6677654
No 5
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=10.16 E-value=97 Score=20.99 Aligned_cols=7 Identities=71% Similarity=1.293 Sum_probs=4.6
Q ss_pred hHHHHHH
Q 031735 71 ILPQLVL 77 (153)
Q Consensus 71 ILPQL~m 77 (153)
|+|||.|
T Consensus 76 i~pQLlL 82 (84)
T 4dra_E 76 VLPQLLL 82 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6777754
No 6
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=8.96 E-value=71 Score=25.65 Aligned_cols=12 Identities=25% Similarity=0.634 Sum_probs=6.2
Q ss_pred hhHHHHHHHHHh
Q 031735 37 FLILPSFVLALL 48 (153)
Q Consensus 37 ~li~p~~vLali 48 (153)
+.++|+++|..+
T Consensus 79 WTiiP~iILi~l 90 (262)
T 2gsm_B 79 WTIVPIVILVAI 90 (262)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 445555555444
No 7
>1nig_A Hypothetical protein TA1238; structural genomics, four helixbundle, PSI, protein structur initiative; 2.00A {Thermoplasma acidophilum} SCOP: a.25.2.1
Probab=7.43 E-value=4.3e+02 Score=19.50 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=23.3
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhcCCccc
Q 031735 86 NLTGNYVFLLGAYRALYILNWAYRFYVEDHKVR 118 (153)
Q Consensus 86 ~lts~Yv~~LG~yR~ly~~nWi~ry~~~~~~~~ 118 (153)
+=++-|++ ++.+-+=..+||+++.-++.+|.+
T Consensus 94 nk~s~Ymf-~A~sh~~~Av~~~~~m~edErFk~ 125 (152)
T 1nig_A 94 NRWSLYMF-LARSAVDSAVYWSYRMKETEEFKE 125 (152)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHHTSTTTTT
T ss_pred chHHHHHH-HHHHHHHHHHHHHHHhcchHHHHH
Confidence 45777887 455556677999999988877643
No 8
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=9.74 E-value=96 Score=25.47 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=13.6
Q ss_pred eehhHHHHHHHHHhcCCCC
Q 031735 35 HYFLILPSFVLALLIPHAF 53 (153)
Q Consensus 35 ~~~li~p~~vLali~~~~~ 53 (153)
+.+.++|++++..+.-|++
T Consensus 85 ~~wt~~P~~il~~l~~~s~ 103 (337)
T 2yev_B 85 VVWTLIPLAIVFVLFGLTA 103 (337)
Confidence 3477889888877776654
No 9
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=6.31 E-value=1.1e+02 Score=25.13 Aligned_cols=12 Identities=17% Similarity=0.675 Sum_probs=5.6
Q ss_pred hhHHHHHHHHHh
Q 031735 37 FLILPSFVLALL 48 (153)
Q Consensus 37 ~li~p~~vLali 48 (153)
+.++|+++|..+
T Consensus 110 WTiiP~iILi~L 121 (298)
T 3hb3_B 110 WTLVPVLILVAI 121 (298)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 444555554443
No 10
>2k37_A Chlorosome protein A; bacteriochlorophyll, chlorophyll, chromophore, electron transport, magnesium, metal-binding, photosynthesis, transport; NMR {Chlorobium tepidum}
Probab=6.24 E-value=1.5e+02 Score=18.97 Aligned_cols=11 Identities=9% Similarity=0.284 Sum_probs=9.7
Q ss_pred HHHHHHHHHHH
Q 031735 60 WTFSIYLEAVA 70 (153)
Q Consensus 60 WtFSiyLEsvA 70 (153)
|++|-++|+++
T Consensus 27 ~~vg~~le~~g 37 (59)
T 2k37_A 27 ETVGMLFDSLG 37 (59)
T ss_dssp HHHHHHTGGGT
T ss_pred HHHHHHHHHHH
Confidence 79999999886
Done!