Query 031735
Match_columns 153
No_of_seqs 110 out of 341
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 06:56:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031735.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031735hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54b2 f.17.2.1 (B:1-90) Mito 25.4 8.4 0.00061 24.6 0.4 14 37-50 65-78 (90)
2 d3ehbb2 f.17.2.1 (B:1-107) Bac 19.8 15 0.0011 23.8 0.9 13 37-49 81-93 (107)
3 d1fftb2 f.17.2.1 (B:27-117) Cy 16.2 48 0.0035 20.6 2.7 44 4-50 28-79 (91)
4 d3dtub2 f.17.2.1 (B:30-129) Ba 15.9 32 0.0023 21.7 1.8 14 37-50 75-88 (100)
5 d2fm9a1 a.257.1.1 (A:49-263) C 13.0 32 0.0023 25.4 1.2 12 65-76 195-206 (215)
6 d1niga_ a.25.2.1 (A:) Hypothet 7.6 2E+02 0.014 19.5 3.7 32 86-118 94-125 (148)
7 d1jt6a2 a.121.1.1 (A:73-187) M 6.5 1.5E+02 0.011 18.8 2.5 32 100-131 80-111 (115)
8 d3b7sa1 a.118.1.7 (A:461-610) 4.8 4.5E+02 0.033 17.2 4.7 62 69-131 57-147 (150)
9 d1dq3a3 d.95.2.2 (A:129-226) P 4.2 1.6E+02 0.011 18.6 1.3 13 83-95 80-92 (98)
10 d1ekra_ d.58.21.1 (A:) Molybde 3.8 1.4E+02 0.011 20.4 0.9 22 80-101 98-120 (146)
No 1
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.38 E-value=8.4 Score=24.55 Aligned_cols=14 Identities=36% Similarity=0.714 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHhcC
Q 031735 37 FLILPSFVLALLIP 50 (153)
Q Consensus 37 ~li~p~~vLali~~ 50 (153)
+-++|+++|..+--
T Consensus 65 WTiiP~lILi~ia~ 78 (90)
T d1v54b2 65 WTILPAIILILIAL 78 (90)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555544433
No 2
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=19.77 E-value=15 Score=23.81 Aligned_cols=13 Identities=15% Similarity=0.508 Sum_probs=6.6
Q ss_pred hhHHHHHHHHHhc
Q 031735 37 FLILPSFVLALLI 49 (153)
Q Consensus 37 ~li~p~~vLali~ 49 (153)
+-++|+++|..+.
T Consensus 81 WTviP~lIL~~la 93 (107)
T d3ehbb2 81 WTLVPVLILVAIG 93 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555443
No 3
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=16.22 E-value=48 Score=20.60 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=21.5
Q ss_pred ehhhHHHHHHHHHhcccccccccccccC------ccee--ehhHHHHHHHHHhcC
Q 031735 4 VFIGTSIAIVWYMRYHKVVKQTYNQDED------TFKH--YFLILPSFVLALLIP 50 (153)
Q Consensus 4 ~~i~~s~~iiyli~~~~~~~~Tyd~~~D------tf~~--~~li~p~~vLali~~ 50 (153)
+++.....++|.+. |||+.-+++.+ +-++ .+-++|++++..+.-
T Consensus 28 v~v~V~~~~~~~~~---ryR~~~~~~~~~~~~~~n~~lEi~WtiIP~iil~~iav 79 (91)
T d1fftb2 28 VVIPAILMAVGFAW---KYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIFLAV 79 (91)
T ss_dssp TTTHHHHHHHTTTT---TTTTSTTTCSSCCCCCCCSHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhe---eeeccCCccCCCCcccCCceehhhHHHHHHHHHHHHHH
Confidence 45556666666654 45544322211 1122 255677777665543
No 4
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=15.91 E-value=32 Score=21.73 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=8.2
Q ss_pred hhHHHHHHHHHhcC
Q 031735 37 FLILPSFVLALLIP 50 (153)
Q Consensus 37 ~li~p~~vLali~~ 50 (153)
+-++|+++|..+.-
T Consensus 75 WTviP~lILi~l~~ 88 (100)
T d3dtub2 75 WTIVPIVILVAIGA 88 (100)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666655533
No 5
>d2fm9a1 a.257.1.1 (A:49-263) Cell invasion protein SipA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=13.03 E-value=32 Score=25.38 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=10.0
Q ss_pred HHHHHHhHHHHH
Q 031735 65 YLEAVAILPQLV 76 (153)
Q Consensus 65 yLEsvAILPQL~ 76 (153)
=||.+|++|||.
T Consensus 195 ~L~~~av~P~LL 206 (215)
T d2fm9a1 195 HLEMQTLIPLLL 206 (215)
T ss_dssp CCHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 478999999974
No 6
>d1niga_ a.25.2.1 (A:) Hypothetical protein Ta1238 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=7.64 E-value=2e+02 Score=19.49 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=23.4
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhcCCccc
Q 031735 86 NLTGNYVFLLGAYRALYILNWAYRFYVEDHKVR 118 (153)
Q Consensus 86 ~lts~Yv~~LG~yR~ly~~nWi~ry~~~~~~~~ 118 (153)
+=++-|++ ++.+-+=..+||+++..++.+|.+
T Consensus 94 nk~slYmf-lArsh~~~Av~~~~~m~edErFk~ 125 (148)
T d1niga_ 94 NRWSLYMF-LARSAVDSAVYWSYRMKETEEFKE 125 (148)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHHTSTTTTT
T ss_pred chHHHHHH-HHHHHHHHHHHHHHHhcchHHHHH
Confidence 45777877 455556677999999988877643
No 7
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=6.45 E-value=1.5e+02 Score=18.82 Aligned_cols=32 Identities=22% Similarity=0.148 Sum_probs=19.4
Q ss_pred HHHHHhhhhhhhhcCCccchhhhhHHHHHHHH
Q 031735 100 ALYILNWAYRFYVEDHKVRWIPWLSGLAQTAL 131 (153)
Q Consensus 100 ~ly~~nWi~ry~~~~~~~~~~~~~~givQt~l 131 (153)
++..+||+..++..+.-.+.-.+.-..+|.++
T Consensus 80 il~~lng~~~Wy~~~g~~~~~~la~~~~~l~L 111 (115)
T d1jt6a2 80 AANAVNGIVTFTHEQNINERIKLMNKFSQIFL 111 (115)
T ss_dssp HHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 45667899887665432245555566666554
No 8
>d3b7sa1 a.118.1.7 (A:461-610) Leukotriene A4 hydrolase C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.83 E-value=4.5e+02 Score=17.18 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=36.6
Q ss_pred HHhHHHHHHHHHhCcccchhHHHHHHHH-------------------------HHHHHHHHh----hhhhhhhcCCccch
Q 031735 69 VAILPQLVLLQRSRNIDNLTGNYVFLLG-------------------------AYRALYILN----WAYRFYVEDHKVRW 119 (153)
Q Consensus 69 vAILPQL~mlqk~~~ve~lts~Yv~~LG-------------------------~yR~ly~~n----Wi~ry~~~~~~~~~ 119 (153)
+.-|.+.+-+.++++.|..-.-|..++. +||.|.-.. |-.+.+.+.+- .+
T Consensus 57 l~~Ld~~Y~ls~s~N~EI~~rW~~l~i~~~~~~~~~~v~~fL~~vGRmKfvrPlYr~L~~~~~~r~~A~~~F~k~r~-~Y 135 (150)
T d3b7sa1 57 IKRMQEVYNFNAINNSEIRFRWLRLCIQSKWEDAIPLALKMATEQGRMKFTRPLFKDLAAFDKSHDQAVRTYQEHKA-SM 135 (150)
T ss_dssp HHHHHHHHCGGGCCCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHCCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHGG-GS
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHcCCceehHHHHHHHHhCcchHHHHHHHHHHHHh-hc
Confidence 4445555555566666665555555444 888886543 66666665433 45
Q ss_pred hhhhHHHHHHHH
Q 031735 120 IPWLSGLAQTAL 131 (153)
Q Consensus 120 ~~~~~givQt~l 131 (153)
.++..+.|+-.|
T Consensus 136 Hpi~~~~V~kdL 147 (150)
T d3b7sa1 136 HPVTAMLVGKDL 147 (150)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh
Confidence 667777776544
No 9
>d1dq3a3 d.95.2.2 (A:129-226) PI-Pfui intein {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=4.24 E-value=1.6e+02 Score=18.61 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=10.0
Q ss_pred cccchhHHHHHHH
Q 031735 83 NIDNLTGNYVFLL 95 (153)
Q Consensus 83 ~ve~lts~Yv~~L 95 (153)
++.++||||+=.|
T Consensus 80 kar~itshy~~ll 92 (98)
T d1dq3a3 80 KARNITSHYLKLL 92 (98)
T ss_dssp CCHHHHHHHHHHH
T ss_pred eecccHHHHHHHH
Confidence 4678999998655
No 10
>d1ekra_ d.58.21.1 (A:) Molybdenum cofactor biosynthesis protein C, MoaC {Escherichia coli [TaxId: 562]}
Probab=3.81 E-value=1.4e+02 Score=20.36 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=17.9
Q ss_pred HhC-cccchhHHHHHHHHHHHHH
Q 031735 80 RSR-NIDNLTGNYVFLLGAYRAL 101 (153)
Q Consensus 80 k~~-~ve~lts~Yv~~LG~yR~l 101 (153)
||| |-|.+|+--+.+|.+|=-+
T Consensus 98 kTGVEMEALtavsva~LTiYDM~ 120 (146)
T d1ekra_ 98 KTGVEMEALTAASVAALTIYDMC 120 (146)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCceehHHHHHHHHHHHHHHHHH
Confidence 566 8899999999999988543
Done!