BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031736
         (153 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OPO|A Chain A, The Structure Of Carnation Mottle Virus
 pdb|1OPO|B Chain B, The Structure Of Carnation Mottle Virus
 pdb|1OPO|C Chain C, The Structure Of Carnation Mottle Virus
          Length = 348

 Score = 30.8 bits (68), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 4/100 (4%)

Query: 27  FLHKSLFLSRPTKTLQNLLFSNPKSSQKKLLRTSTINASLLEAPLLWAGRLCVYYALLKA 86
           F+  ++ LS PTKT +    SN K S        ++N + L+  ++ AG+ C+   +++ 
Sbjct: 232 FIQYTIVLSDPTKTAKISQASNDKVSDGPTYVVPSVNGNELQLRVVAAGKWCI---IVRG 288

Query: 87  GLAGSQANP-LVSDLESGGVTGSEGADLGFSKWLENIKGK 125
            + G    P L+    SG V       +   + +  ++G+
Sbjct: 289 TVEGGFTKPTLIGPGISGDVDYESARPIAVCELVTQMEGQ 328


>pdb|4AOE|A Chain A, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2
           (Bgachbp2)
 pdb|4AOE|B Chain B, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2
           (Bgachbp2)
 pdb|4AOE|C Chain C, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2
           (Bgachbp2)
 pdb|4AOE|D Chain D, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2
           (Bgachbp2)
 pdb|4AOE|E Chain E, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2
           (Bgachbp2)
          Length = 205

 Score = 27.7 bits (60), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 60  STINASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWL 119
           +T N   L +  +W   + VY ++ K G+   Q   LV   + G VT      + FS  L
Sbjct: 72  TTFNELTLPSKYIWLPHIEVYNSIGKPGIHSDQ---LVRVYKDGTVTFVPQYTIRFSCAL 128

Query: 120 ENIKGKPGLWVSFCF--WIY 137
           EN+  + G   +  F  W Y
Sbjct: 129 ENVTTEQGAACTLKFGPWTY 148


>pdb|1URJ|A Chain A, Single Stranded Dna-Binding Protein(Icp8) From Herpes
           Simplex Virus-1
 pdb|1URJ|B Chain B, Single Stranded Dna-Binding Protein(Icp8) From Herpes
           Simplex Virus-1
          Length = 1136

 Score = 27.7 bits (60), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%)

Query: 84  LKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLENIKGKPGLWVS 131
           L A +AGS+  P V    +    G  G + G    ++ +   PG W S
Sbjct: 914 LTAIIAGSRRPPSVQAAAAWSAQGGAGLEAGARALMDAVDAHPGAWTS 961


>pdb|1U2Z|A Chain A, Crystal Structure Of Histone K79 Methyltransferase Dot1p
           From Yeast
 pdb|1U2Z|B Chain B, Crystal Structure Of Histone K79 Methyltransferase Dot1p
           From Yeast
 pdb|1U2Z|C Chain C, Crystal Structure Of Histone K79 Methyltransferase Dot1p
           From Yeast
          Length = 433

 Score = 26.6 bits (57), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 7   FTASPFRSQNHLFNNLSPTSFLHKSLFLSRPTKTLQNLLFSNPKSSQKKLLRTSTINASL 66
           ++ +P +S +   N+  PTS    +   S  T  LQ++LFSN     K   + ST     
Sbjct: 56  YSGTPIQSISLRTNSPQPTSLTSDNDTSSVTTAKLQSILFSNYMEEYKVDFKRSTA---- 111

Query: 67  LEAPLLWAGRLCVYYALL 84
           +  P+   G+L  Y  L+
Sbjct: 112 IYNPMSEIGKLIEYSCLV 129


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,360,478
Number of Sequences: 62578
Number of extensions: 157400
Number of successful extensions: 283
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 280
Number of HSP's gapped (non-prelim): 4
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)