BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031736
(153 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Q6X7|CAPSD_CARMS Capsid protein OS=Carnation mottle virus (isolate China/Shanghai)
GN=ORF4 PE=3 SV=1
Length = 348
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 27 FLHKSLFLSRPTKTLQNLLFSNPKSSQKKLLRTSTINASLLEAPLLWAGRLCVYYALLKA 86
F+ ++ LS PTKT + SN K S ++N + L+ ++ AG+ C+ +++
Sbjct: 232 FIQYTIVLSDPTKTAKISQASNDKVSDGPTYVVPSVNGNELQLRVVAAGKWCI---IVRG 288
Query: 87 GLAGSQANP-LVSDLESGGVTGSEGADLGFSKWLENIKGK 125
+ G P L+ SG V + + + ++G+
Sbjct: 289 TVEGGFTKPTLIGPGISGDVDYESARPIAICELVTQMEGQ 328
>sp|P04383|CAPSD_CARMV Capsid protein OS=Carnation mottle virus GN=ORF4 PE=1 SV=1
Length = 348
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 27 FLHKSLFLSRPTKTLQNLLFSNPKSSQKKLLRTSTINASLLEAPLLWAGRLCVYYALLKA 86
F+ ++ LS PTKT + SN K S ++N + L+ ++ AG+ C+ +++
Sbjct: 232 FIQYTIVLSDPTKTAKISQASNDKVSDGPTYVVPSVNGNELQLRVVAAGKWCI---IVRG 288
Query: 87 GLAGSQANP-LVSDLESGGVTGSEGADLGFSKWLENIKGK 125
+ G P L+ SG V + + + ++G+
Sbjct: 289 TVEGGFTKPTLIGPGISGDVDYESARPIAVCELVTQMEGQ 328
>sp|Q6CF18|NTE1_YARLI Lysophospholipase NTE1 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=NTE1 PE=3 SV=1
Length = 1427
Score = 30.0 bits (66), Expect = 6.3, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 40 TLQNLLFS-NPKSSQKKLLRTSTINASLLEAPLLWAGRLCVYYALLKAGLAGSQANPLVS 98
++QNL FS N ++ LRT+ + A +L R + +++ + A+P+ +
Sbjct: 500 SIQNLSFSGNDDENEDTALRTALVEAIF---KVLGIDRDSIQSSIMAVKTMSNTASPMFT 556
Query: 99 DLESGGVTGSEGADL 113
+GG +GS G +L
Sbjct: 557 GATTGGSSGSLGEEL 571
>sp|Q49W60|2NPD_STAS1 Probable nitronate monooxygenase OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=SSP1854 PE=3 SV=1
Length = 355
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 75 GRLCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLEN 121
G L V Y +++AG+AGS LV+ + + G G+ GA S LE
Sbjct: 9 GLLNVKYPIIQAGMAGSTTPELVATVSNAGGLGTIGAGYFSSDRLEQ 55
>sp|Q68DQ2|CRBG3_HUMAN Beta/gamma crystallin domain-containing protein 3 OS=Homo sapiens
GN=CRYBG3 PE=2 SV=2
Length = 1022
Score = 29.3 bits (64), Expect = 9.3, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 81 YALLKAGLAGSQANPLVSDLESG---GVTGSEGADL---GFSKWLENIKGKPGLWVSF 132
+ L+A S SDLESG +T E +DL GF +I K G+WV++
Sbjct: 614 FRYLQANFIESSVTLFESDLESGKFIDITNQEISDLEEIGFGSKTRSIHVKSGVWVAY 671
>sp|A8Z1H7|2NPD_STAAT Probable nitronate monooxygenase OS=Staphylococcus aureus (strain
USA300 / TCH1516) GN=USA300HOU_0879 PE=3 SV=1
Length = 355
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 77 LCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLEN 121
L + Y +++AG+AGS LV+ + + G G+ GA ++ LE+
Sbjct: 11 LSIEYPIIQAGMAGSTTPKLVASVSNSGGLGTIGAGYFNTQQLED 55
>sp|A6QFD2|2NPD_STAAE Probable nitronate monooxygenase OS=Staphylococcus aureus (strain
Newman) GN=NWMN_0792 PE=3 SV=1
Length = 355
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 77 LCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLEN 121
L + Y +++AG+AGS LV+ + + G G+ GA ++ LE+
Sbjct: 11 LSIEYPIIQAGMAGSTTPKLVASVSNSGGLGTIGAGYFNTQQLED 55
>sp|Q5HHG4|2NPD_STAAC Probable nitronate monooxygenase OS=Staphylococcus aureus (strain
COL) GN=SACOL0922 PE=3 SV=1
Length = 355
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 77 LCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLEN 121
L + Y +++AG+AGS LV+ + + G G+ GA ++ LE+
Sbjct: 11 LSIEYPIIQAGMAGSTTPKLVASVSNSGGLGTIGAGYFNTQQLED 55
>sp|Q2FZX9|2NPD_STAA8 Probable nitronate monooxygenase OS=Staphylococcus aureus (strain
NCTC 8325) GN=SAOUHSC_00855 PE=3 SV=1
Length = 355
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 77 LCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLEN 121
L + Y +++AG+AGS LV+ + + G G+ GA ++ LE+
Sbjct: 11 LSIEYPIIQAGMAGSTTPKLVASVSNSGGLGTIGAGYFNTQQLED 55
>sp|Q2FIF3|2NPD_STAA3 Probable nitronate monooxygenase OS=Staphylococcus aureus (strain
USA300) GN=SAUSA300_0825 PE=3 SV=1
Length = 355
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 77 LCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLEN 121
L + Y +++AG+AGS LV+ + + G G+ GA ++ LE+
Sbjct: 11 LSIEYPIIQAGMAGSTTPKLVASVSNSGGLGTIGAGYFNTQQLED 55
>sp|Q6GIG7|2NPD_STAAR Probable nitronate monooxygenase OS=Staphylococcus aureus (strain
MRSA252) GN=SAR0883 PE=3 SV=1
Length = 355
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 77 LCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLEN 121
L + Y +++AG+AGS LV+ + + G G+ GA ++ LE+
Sbjct: 11 LSIEYPIIQAGMAGSTTPKLVASVSNSGGLGTIGAGYFNTQQLED 55
>sp|Q8NXG7|2NPD_STAAW Probable nitronate monooxygenase OS=Staphylococcus aureus (strain
MW2) GN=MW0803 PE=3 SV=1
Length = 355
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 77 LCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLEN 121
L + Y +++AG+AGS LV+ + + G G+ GA ++ LE+
Sbjct: 11 LSIEYPIIQAGMAGSTTPKLVASVSNSGGLGTIGAGYFNTQQLED 55
>sp|Q6GB05|2NPD_STAAS Probable nitronate monooxygenase OS=Staphylococcus aureus (strain
MSSA476) GN=SAS0791 PE=3 SV=1
Length = 355
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 77 LCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLEN 121
L + Y +++AG+AGS LV+ + + G G+ GA ++ LE+
Sbjct: 11 LSIEYPIIQAGMAGSTTPKLVASVSNSGGLGTIGAGYFNTQQLED 55
>sp|Q99VF6|2NPD_STAAN Probable nitronate monooxygenase OS=Staphylococcus aureus (strain
N315) GN=SA0781 PE=3 SV=1
Length = 355
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 77 LCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLEN 121
L + Y +++AG+AGS LV+ + + G G+ GA ++ LE+
Sbjct: 11 LSIEYPIIQAGMAGSTTPKLVASVSNSGGLGTIGAGYFNTQQLED 55
>sp|A5IR97|2NPD_STAA9 Probable nitronate monooxygenase OS=Staphylococcus aureus (strain
JH9) GN=SaurJH9_0919 PE=3 SV=1
Length = 355
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 77 LCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLEN 121
L + Y +++AG+AGS LV+ + + G G+ GA ++ LE+
Sbjct: 11 LSIEYPIIQAGMAGSTTPKLVASVSNSGGLGTIGAGYFNTQQLED 55
>sp|A6U025|2NPD_STAA2 Probable nitronate monooxygenase OS=Staphylococcus aureus (strain
JH1) GN=SaurJH1_0937 PE=3 SV=1
Length = 355
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 77 LCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLEN 121
L + Y +++AG+AGS LV+ + + G G+ GA ++ LE+
Sbjct: 11 LSIEYPIIQAGMAGSTTPKLVASVSNSGGLGTIGAGYFNTQQLED 55
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,142,310
Number of Sequences: 539616
Number of extensions: 2030615
Number of successful extensions: 4088
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4073
Number of HSP's gapped (non-prelim): 19
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)