Query 031736
Match_columns 153
No_of_seqs 12 out of 14
Neff 1.8
Searched_HMMs 46136
Date Fri Mar 29 04:38:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031736.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031736hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3288 OTU-like cysteine prot 36.3 18 0.00039 32.3 1.1 19 117-137 155-173 (307)
2 PF02083 Urotensin_II: Urotens 26.5 25 0.00055 18.3 0.3 7 131-137 4-10 (12)
3 PF09188 DUF1951: Domain of un 24.7 30 0.00066 27.8 0.5 54 36-89 57-110 (137)
4 PF06406 StbA: StbA protein; 19.8 46 0.00099 27.5 0.6 29 74-103 77-105 (318)
5 PF01956 DUF106: Integral memb 18.6 1.1E+02 0.0023 23.0 2.3 30 115-146 127-158 (168)
6 PF01794 Ferric_reduct: Ferric 18.4 1E+02 0.0022 20.5 2.0 16 73-88 39-54 (125)
7 PF05125 Phage_cap_P2: Phage m 17.1 68 0.0015 28.5 1.1 31 84-128 138-177 (333)
8 COG4060 MtrD Tetrahydromethano 17.1 72 0.0016 27.4 1.2 47 74-121 150-208 (230)
9 TIGR01551 major_capsid_P2 phag 16.6 76 0.0017 28.2 1.3 31 83-127 132-171 (327)
10 KOG4039 Serine/threonine kinas 16.4 76 0.0016 27.5 1.2 22 113-134 69-90 (238)
No 1
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=36.34 E-value=18 Score=32.26 Aligned_cols=19 Identities=42% Similarity=0.921 Sum_probs=16.5
Q ss_pred HHHHHhhCCCCceeehhhHHH
Q 031736 117 KWLENIKGKPGLWVSFCFWIY 137 (153)
Q Consensus 117 KW~e~i~GkP~kev~~~~~~~ 137 (153)
|.-++|+|||.+| +|-||-
T Consensus 155 ~yn~AiLgK~n~e--Yc~WI~ 173 (307)
T KOG3288|consen 155 KYNDAILGKPNKE--YCAWIL 173 (307)
T ss_pred hhhHHHhCCCcHH--HHHHHc
Confidence 7789999999987 799983
No 2
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=26.54 E-value=25 Score=18.27 Aligned_cols=7 Identities=71% Similarity=1.744 Sum_probs=5.1
Q ss_pred ehhhHHH
Q 031736 131 SFCFWIY 137 (153)
Q Consensus 131 ~~~~~~~ 137 (153)
+=|||-|
T Consensus 4 ~~CFWKY 10 (12)
T PF02083_consen 4 SECFWKY 10 (12)
T ss_pred cchhhhh
Confidence 3499977
No 3
>PF09188 DUF1951: Domain of unknown function (DUF1951); InterPro: IPR015271 Members of this family of Mycoplasma hypothetical proteins adopt a multi-helical structure that contains a buried central helix. Their function has not, as yet, been determined. ; PDB: 1TM9_A.
Probab=24.73 E-value=30 Score=27.83 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=33.4
Q ss_pred CchhhhhhhhccCCcchhhhhhccccceecccccchhhhhhHHHHHHHHHhhcc
Q 031736 36 RPTKTLQNLLFSNPKSSQKKLLRTSTINASLLEAPLLWAGRLCVYYALLKAGLA 89 (153)
Q Consensus 36 ~Ptkt~~~~~f~~~k~~~~~~~~~~~~~ASLLE~PVLWaGRlCifYALlkaGlA 89 (153)
.|+++--+-+|-|+-.-..+..+++.-.||+.-+--==|-..|+||-|-|-|+-
T Consensus 57 E~~q~~~~k~~inn~~T~~tv~~~~q~v~S~Fstn~e~~~~FC~~YfLy~~~F~ 110 (137)
T PF09188_consen 57 EPTQHEIRKFAINNIKTLSTVGEEGQYVASLFSTNKEIAIIFCLYYFLYHFSFL 110 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--SS---STHHHHS-HHHHHHHHHHHHHHHTT-S
T ss_pred CchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCchHHHHHHHHHHHHHhhcc
Confidence 356655555554444444456667778889887766667889999999999874
No 4
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=19.78 E-value=46 Score=27.45 Aligned_cols=29 Identities=38% Similarity=0.403 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHhhccCCCCCCcccccccC
Q 031736 74 AGRLCVYYALLKAGLAGSQANPLVSDLESG 103 (153)
Q Consensus 74 aGRlCifYALlkaGlAGS~~NP~vS~Le~g 103 (153)
.-|+.|.-||.++|+.+.+.+ ++.||-+.
T Consensus 77 ~n~~av~haL~~~G~~~~~V~-lvvGLPl~ 105 (318)
T PF06406_consen 77 LNLVAVHHALLKAGLEPQDVD-LVVGLPLS 105 (318)
T ss_dssp HHHHHHHHHHHHHS--SSEEE-EEEEE-HH
T ss_pred hhHHHHHHHHHHcCCCCCCeE-EEecCCHH
Confidence 458999999999999876655 78888875
No 5
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=18.58 E-value=1.1e+02 Score=23.00 Aligned_cols=30 Identities=40% Similarity=0.593 Sum_probs=19.0
Q ss_pred hHHHHHHhhCCCCceeehhhHH--HHHHHHhhhh
Q 031736 115 FSKWLENIKGKPGLWVSFCFWI--YFAYVIKLRT 146 (153)
Q Consensus 115 FSKW~e~i~GkP~kev~~~~~~--~~~~~~~~~~ 146 (153)
|..|+| +|-++.++.+|.|+ ||.-..-+|.
T Consensus 127 f~~~~q--rgl~~~d~~~~s~i~wYfL~s~~~~~ 158 (168)
T PF01956_consen 127 FKSMLQ--RGLEGLDVSYVSSISWYFLCSFGLRQ 158 (168)
T ss_pred HhHHhh--cCCCCCcccHhHHHHHHHHHHHHHHH
Confidence 555666 45588888999886 4444444444
No 6
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=18.40 E-value=1e+02 Score=20.55 Aligned_cols=16 Identities=50% Similarity=0.962 Sum_probs=14.4
Q ss_pred hhhhHHHHHHHHHhhc
Q 031736 73 WAGRLCVYYALLKAGL 88 (153)
Q Consensus 73 WaGRlCifYALlkaGl 88 (153)
|.||++++.+++|...
T Consensus 39 ~lg~~~~~~~~~H~~~ 54 (125)
T PF01794_consen 39 WLGRLAFFLALLHGVL 54 (125)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999653
No 7
>PF05125 Phage_cap_P2: Phage major capsid protein, P2 family ; InterPro: IPR006441 This entry is represented by Bacteriophage P2, GpN. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family represents the major capsid protein component of the heads (capsids) of bacteriophage P2 and related phage including prophage. These sequences represent one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. ; GO: 0019028 viral capsid
Probab=17.06 E-value=68 Score=28.53 Aligned_cols=31 Identities=39% Similarity=0.876 Sum_probs=24.5
Q ss_pred HHhhccCC--------CCCCcccccccCCCCCCCCCccchHHHHHHhhC-CCCc
Q 031736 84 LKAGLAGS--------QANPLVSDLESGGVTGSEGADLGFSKWLENIKG-KPGL 128 (153)
Q Consensus 84 lkaGlAGS--------~~NP~vS~Le~gd~~~a~~~DLGFSKW~e~i~G-kP~k 128 (153)
+.+|+-|- .+||++.|..+| |+|.++- +|+.
T Consensus 138 i~IGfNGts~A~~Td~~~nPllqDVN~G--------------WLQ~~Re~a~~r 177 (333)
T PF05125_consen 138 IMIGFNGTSAAATTDRAANPLLQDVNKG--------------WLQKIRENAPER 177 (333)
T ss_pred eeeccCceeecCCCCcccCCCccccchH--------------HHHHHHhhCccc
Confidence 56788774 579999998888 9999997 6643
No 8
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=17.06 E-value=72 Score=27.42 Aligned_cols=47 Identities=34% Similarity=0.372 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHhhccCCC------------CCCcccccccCCCCCCCCCccchHHHHHH
Q 031736 74 AGRLCVYYALLKAGLAGSQ------------ANPLVSDLESGGVTGSEGADLGFSKWLEN 121 (153)
Q Consensus 74 aGRlCifYALlkaGlAGS~------------~NP~vS~Le~gd~~~a~~~DLGFSKW~e~ 121 (153)
-|---+||||.|.|+-+++ .|-.+-.-.|| +..++--|==|.||-..
T Consensus 150 iGGalvY~aL~~~~~t~~~gvA~m~AvG~FfiNAVlaSYNIG-GTIEGfHDPKfkk~pk~ 208 (230)
T COG4060 150 IGGALVYYALYKVGLTMSAGVAGMLAVGFFFINAVLASYNIG-GTIEGFHDPKFKKLPKA 208 (230)
T ss_pred ccchhhHHHHHHHhcccchHHHHHHHHHHHHhhhhhhhcccC-ceeecccChhhhccchH
Confidence 4555699999999997776 47777777888 55667777777777443
No 9
>TIGR01551 major_capsid_P2 phage major capsid protein, P2 family. This model family represents the major capsid protein component of the heads (capsids) of bacteriophage P2 and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=16.57 E-value=76 Score=28.17 Aligned_cols=31 Identities=39% Similarity=0.853 Sum_probs=24.6
Q ss_pred HHHhhccCCC--------CCCcccccccCCCCCCCCCccchHHHHHHhhC-CCC
Q 031736 83 LLKAGLAGSQ--------ANPLVSDLESGGVTGSEGADLGFSKWLENIKG-KPG 127 (153)
Q Consensus 83 LlkaGlAGS~--------~NP~vS~Le~gd~~~a~~~DLGFSKW~e~i~G-kP~ 127 (153)
.+.+|+-|-. +||++.|..+| |+|.++- +|+
T Consensus 132 ~i~IGfnG~s~A~~Td~~aNPllqDVNkG--------------WlQ~~Re~~~~ 171 (327)
T TIGR01551 132 ILQIGWNGQSAAADTDKTANPLLSDVNKG--------------WLKLLQEQRAA 171 (327)
T ss_pred hhhhccCceecccCCCcccCCCcccccHH--------------HHHHHHhcCch
Confidence 4668888854 49999998888 9999997 553
No 10
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=16.41 E-value=76 Score=27.51 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=17.7
Q ss_pred cchHHHHHHhhCCCCceeehhh
Q 031736 113 LGFSKWLENIKGKPGLWVSFCF 134 (153)
Q Consensus 113 LGFSKW~e~i~GkP~kev~~~~ 134 (153)
--||||-|.+----.-+|.||-
T Consensus 69 vDf~Kl~~~a~~~qg~dV~Fca 90 (238)
T KOG4039|consen 69 VDFSKLSQLATNEQGPDVLFCA 90 (238)
T ss_pred echHHHHHHHhhhcCCceEEEe
Confidence 4599999887776667899995
Done!