Query 031736
Match_columns 153
No_of_seqs 12 out of 14
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 06:57:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031736.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031736hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1aqz_A Restrictocin; ribotoxin 11.4 59 0.002 25.4 0.4 12 65-76 92-103 (149)
2 2w0c_P Protein P3, protein III 10.9 70 0.0024 23.7 0.6 14 108-121 20-33 (104)
3 2bud_A Males-absent on the fir 9.3 1.7E+02 0.0057 20.8 2.1 15 90-104 1-15 (92)
4 2l8s_A Integrin alpha-1; trans 8.8 2.2E+02 0.0075 18.6 2.4 24 78-101 25-48 (54)
5 3bpu_A Membrane-associated gua 8.7 3.2E+02 0.011 16.4 3.1 41 89-132 35-80 (88)
6 2ww9_B Protein transport prote 8.4 2.2E+02 0.0075 19.7 2.4 30 116-145 30-71 (80)
7 2wwb_B SEC61gamma, protein tra 8.4 2E+02 0.0068 19.2 2.0 30 116-145 16-57 (68)
8 3tia_A Neuraminidase; 6-bladed 8.2 39 0.0013 30.4 -1.9 12 118-129 423-434 (469)
9 3by7_A Uncharacterized protein 8.1 29 0.00099 25.1 -2.4 11 112-122 47-57 (100)
10 1rh5_B Preprotein translocase 7.7 2.5E+02 0.0087 19.0 2.4 30 116-145 17-58 (74)
No 1
>1aqz_A Restrictocin; ribotoxin, ribosome-inactivating protein, protein-RNA specific interaction, LAUE diffraction, cell-entry activity; 1.70A {Aspergillus restrictus} SCOP: d.1.1.3 PDB: 1jbs_A* 1jbr_A* 1jbt_A 1de3_A 1r4y_A
Probab=11.42 E-value=59 Score=25.36 Aligned_cols=12 Identities=42% Similarity=0.490 Sum_probs=10.6
Q ss_pred cccccchhhhhh
Q 031736 65 SLLEAPLLWAGR 76 (153)
Q Consensus 65 SLLE~PVLWaGR 76 (153)
.|+|-||+|.|.
T Consensus 92 ~llEfPi~~~g~ 103 (149)
T 1aqz_A 92 YLLEFPTFPDGH 103 (149)
T ss_dssp EEEEEECCTTCC
T ss_pred ceEEecccccCC
Confidence 499999999995
No 2
>2w0c_P Protein P3, protein III; virus, member of PRD1-adeno viral lineage, membrane-containing bacteriophage, virus virion, membrane; 7.00A {Pseudoalteromonas phage PM2}
Probab=10.94 E-value=70 Score=23.66 Aligned_cols=14 Identities=36% Similarity=0.475 Sum_probs=11.2
Q ss_pred CCCCccchHHHHHH
Q 031736 108 SEGADLGFSKWLEN 121 (153)
Q Consensus 108 a~~~DLGFSKW~e~ 121 (153)
...-|+|.++|++-
T Consensus 20 ~~~LD~~l~~WA~i 33 (104)
T 2w0c_P 20 STGLDALISGWARV 33 (104)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45679999999863
No 3
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=9.32 E-value=1.7e+02 Score=20.77 Aligned_cols=15 Identities=27% Similarity=0.638 Sum_probs=13.5
Q ss_pred CCCCCCcccccccCC
Q 031736 90 GSQANPLVSDLESGG 104 (153)
Q Consensus 90 GS~~NP~vS~Le~gd 104 (153)
||-++|.+.+++|+.
T Consensus 1 ~~~~~~~~~~i~i~~ 15 (92)
T 2bud_A 1 GSHMDPLMQKIDISE 15 (92)
T ss_dssp CCSCCSSCSSCCSTT
T ss_pred CCccCcccceEEecC
Confidence 789999999999984
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=8.80 E-value=2.2e+02 Score=18.61 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=17.6
Q ss_pred HHHHHHHHhhccCCCCCCcccccc
Q 031736 78 CVYYALLKAGLAGSQANPLVSDLE 101 (153)
Q Consensus 78 CifYALlkaGlAGS~~NP~vS~Le 101 (153)
-+.|+|-|.|+--.+.-+..++||
T Consensus 25 Lii~~LwK~GFFKR~~~~~~~~~~ 48 (54)
T 2l8s_A 25 LLILALWKIGFFKRPLKKKMEKLE 48 (54)
T ss_dssp HHHHHHHHHHHTTSCCSCCCCC--
T ss_pred HHHHHHHHcCcccCCCcchhhHHh
Confidence 356889999999887777777766
No 5
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=8.73 E-value=3.2e+02 Score=16.42 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=23.3
Q ss_pred cCCCCCCcccccccCCC----CCCCCCccchHHHHHHhh-CCCCceeeh
Q 031736 89 AGSQANPLVSDLESGGV----TGSEGADLGFSKWLENIK-GKPGLWVSF 132 (153)
Q Consensus 89 AGS~~NP~vS~Le~gd~----~~a~~~DLGFSKW~e~i~-GkP~kev~~ 132 (153)
.||||- .||..||. ++..-.++-+....+.|+ +++.++|.+
T Consensus 35 ~~spA~---aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l 80 (88)
T 3bpu_A 35 VDSPRS---RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTL 80 (88)
T ss_dssp CC--CC---TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEE
T ss_pred cCChhH---hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEE
Confidence 467775 47877772 333334444567777777 466666654
No 6
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=8.39 E-value=2.2e+02 Score=19.71 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=22.4
Q ss_pred HHHHHHhhC--CCCce----------eehhhHHHHHHHHhhh
Q 031736 116 SKWLENIKG--KPGLW----------VSFCFWIYFAYVIKLR 145 (153)
Q Consensus 116 SKW~e~i~G--kP~ke----------v~~~~~~~~~~~~~~~ 145 (153)
..|.+-++. ||+++ +.|+..-..+|+|||-
T Consensus 30 kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiIkLI 71 (80)
T 2ww9_B 30 REGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLI 71 (80)
T ss_dssp HHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777 99766 5677788888888873
No 7
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=8.36 E-value=2e+02 Score=19.22 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=21.4
Q ss_pred HHHHHHhhC--CCCce----------eehhhHHHHHHHHhhh
Q 031736 116 SKWLENIKG--KPGLW----------VSFCFWIYFAYVIKLR 145 (153)
Q Consensus 116 SKW~e~i~G--kP~ke----------v~~~~~~~~~~~~~~~ 145 (153)
..|.+-++. ||++| +.|+..-..+|+|||-
T Consensus 16 k~~~r~lk~~~KPdr~Ef~~iak~~~iG~~i~G~IGf~IklI 57 (68)
T 2wwb_B 16 KDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLI 57 (68)
T ss_dssp HHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666665 99765 5677777888888873
No 8
>3tia_A Neuraminidase; 6-bladed beta-propeller, calcium binding, glycosylation, ANT hydrolase-hydrolase inhibitor complex; HET: NAG BMA MAN LNV; 1.80A {Influenza a virus} PDB: 3tib_A* 3tic_A* 2bat_A* 1ivd_A* 1inh_A* 1inw_A* 1inx_A* 1ivc_A* 1ing_A* 1ive_A* 1ivf_A* 1ivg_A* 1nn2_A* 2aep_A* 2aeq_A* 4gzq_A* 4gzo_A* 4gzp_A* 4gzt_A* 4gzs_A* ...
Probab=8.25 E-value=39 Score=30.37 Aligned_cols=12 Identities=33% Similarity=0.634 Sum_probs=9.9
Q ss_pred HHHHhhCCCCce
Q 031736 118 WLENIKGKPGLW 129 (153)
Q Consensus 118 W~e~i~GkP~ke 129 (153)
|.|-|+|+|.++
T Consensus 423 ~VElIRGrp~e~ 434 (469)
T 3tia_A 423 YVELIRGRPQET 434 (469)
T ss_dssp EEEEEEETTTCT
T ss_pred EEEEEeCCCCCC
Confidence 889999999554
No 9
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=8.06 E-value=29 Score=25.09 Aligned_cols=11 Identities=27% Similarity=0.465 Sum_probs=9.3
Q ss_pred ccchHHHHHHh
Q 031736 112 DLGFSKWLENI 122 (153)
Q Consensus 112 DLGFSKW~e~i 122 (153)
.+||++|++-.
T Consensus 47 gigF~pW~pls 57 (100)
T 3by7_A 47 QLVLSPWQPYT 57 (100)
T ss_dssp EEEEEESCTTB
T ss_pred eEeeecccccC
Confidence 89999999843
No 10
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=7.66 E-value=2.5e+02 Score=18.97 Aligned_cols=30 Identities=13% Similarity=0.101 Sum_probs=20.7
Q ss_pred HHHHHHhhC--CCCce----------eehhhHHHHHHHHhhh
Q 031736 116 SKWLENIKG--KPGLW----------VSFCFWIYFAYVIKLR 145 (153)
Q Consensus 116 SKW~e~i~G--kP~ke----------v~~~~~~~~~~~~~~~ 145 (153)
..|..-++. ||++| +.|+..-...|+||+-
T Consensus 17 kd~~rvlk~~~KPdr~EF~~iak~~~iG~~imG~IGfiIkli 58 (74)
T 1rh5_B 17 EECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIHVP 58 (74)
T ss_dssp HHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666 99765 4577777788888873
Done!