Query 031736
Match_columns 153
No_of_seqs 12 out of 14
Neff 1.8
Searched_HMMs 13730
Date Mon Mar 25 06:57:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031736.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031736hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rzhh2 f.23.10.1 (H:11-35) Ph 60.5 1.8 0.00013 24.2 1.4 12 132-143 8-19 (26)
2 d1eysh2 f.23.10.1 (H:7-43) Pho 23.2 17 0.0012 21.3 1.5 11 132-142 11-21 (37)
3 d3c2wa2 d.110.2.4 (A:310-494) 20.7 43 0.0031 23.4 3.6 36 89-128 129-164 (185)
4 d1q90d_ f.32.1.1 (D:) Subunit 15.2 37 0.0027 23.9 2.0 27 77-103 47-73 (156)
5 d1fc6a3 b.36.1.3 (A:157-248) P 12.8 59 0.0043 19.6 2.3 35 98-132 35-73 (92)
6 d2f2ha4 c.1.8.13 (A:248-585) P 12.6 98 0.0072 21.8 3.8 44 73-121 240-283 (338)
7 d2fhqa1 b.45.1.1 (A:3-137) Put 11.4 23 0.0017 22.3 -0.0 18 116-135 53-70 (135)
8 d2naca2 c.23.12.1 (A:1-147,A:3 10.9 75 0.0054 23.0 2.7 15 107-121 51-65 (186)
9 d1myoa_ d.211.1.1 (A:) Myotrop 10.8 31 0.0022 20.7 0.4 22 66-87 1-25 (118)
10 d2qtva4 d.109.2.1 (A:627-768) 8.5 1.4E+02 0.01 20.8 3.4 33 91-123 100-134 (142)
No 1
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=60.46 E-value=1.8 Score=24.21 Aligned_cols=12 Identities=42% Similarity=1.099 Sum_probs=9.5
Q ss_pred hhhHHHHHHHHh
Q 031736 132 FCFWIYFAYVIK 143 (153)
Q Consensus 132 ~~~~~~~~~~~~ 143 (153)
.-|||+||..|-
T Consensus 8 w~fw~ffalli~ 19 (26)
T d1rzhh2 8 YSFWIFLAGLIY 19 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 469999998763
No 2
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=23.16 E-value=17 Score=21.33 Aligned_cols=11 Identities=36% Similarity=1.201 Sum_probs=8.6
Q ss_pred hhhHHHHHHHH
Q 031736 132 FCFWIYFAYVI 142 (153)
Q Consensus 132 ~~~~~~~~~~~ 142 (153)
+.||++||-.|
T Consensus 11 y~Fw~FFagLi 21 (37)
T d1eysh2 11 WAFWLFFFGLI 21 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56999998655
No 3
>d3c2wa2 d.110.2.4 (A:310-494) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.66 E-value=43 Score=23.44 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=20.7
Q ss_pred cCCCCCCcccccccCCCCCCCCCccchHHHHHHhhCCCCc
Q 031736 89 AGSQANPLVSDLESGGVTGSEGADLGFSKWLENIKGKPGL 128 (153)
Q Consensus 89 AGS~~NP~vS~Le~gd~~~a~~~DLGFSKW~e~i~GkP~k 128 (153)
||.|..|...| +.| ..=.--=-|.+|.|.++|+...
T Consensus 129 AG~P~k~~~~~-~~g---~rLsPR~SFe~W~E~vrg~S~p 164 (185)
T d3c2wa2 129 GGKPEKLLTIG-PSG---PRLTPRGSFEAWEEVVRGHSTP 164 (185)
T ss_dssp ESCCCCCSCCB-TTB---STTSHHHHHHHHHHHHTTCCCC
T ss_pred CCCCccccccC-CCC---CccCchhhHHHHHHHHcCcCCC
Confidence 56677776544 111 0111122499999999995543
No 4
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=15.17 E-value=37 Score=23.86 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhccCCCCCCcccccccC
Q 031736 77 LCVYYALLKAGLAGSQANPLVSDLESG 103 (153)
Q Consensus 77 lCifYALlkaGlAGS~~NP~vS~Le~g 103 (153)
+|+..|++.---.|.||||+++-.+|-
T Consensus 47 ~~~~l~v~~p~~lgepANP~~TP~hI~ 73 (156)
T d1q90d_ 47 CVIGLSVLDPAAMGEPANPFATPLEIL 73 (156)
T ss_dssp HHHHHHHHSCCBCCCBCCTTCCCSSCC
T ss_pred HHHHHHHcCccccCCCCCCCCCCCCCC
Confidence 355578888888899999999987764
No 5
>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}
Probab=12.81 E-value=59 Score=19.56 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=23.6
Q ss_pred cccccCC----CCCCCCCccchHHHHHHhhCCCCceeeh
Q 031736 98 SDLESGG----VTGSEGADLGFSKWLENIKGKPGLWVSF 132 (153)
Q Consensus 98 S~Le~gd----~~~a~~~DLGFSKW~e~i~GkP~kev~~ 132 (153)
.||..|| .++..-.++-...-.+.|+|+|..+|.+
T Consensus 35 AGl~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l 73 (92)
T d1fc6a3 35 AGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEV 73 (92)
T ss_dssp TTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEE
T ss_pred HhhHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEE
Confidence 3555555 2333344566788899999999888875
No 6
>d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2 {Escherichia coli [TaxId: 562]}
Probab=12.64 E-value=98 Score=21.83 Aligned_cols=44 Identities=20% Similarity=0.362 Sum_probs=31.5
Q ss_pred hhhhHHHHHHHHHhhccCCCCCCcccccccCCCCCCCCCccchHHHHHH
Q 031736 73 WAGRLCVYYALLKAGLAGSQANPLVSDLESGGVTGSEGADLGFSKWLEN 121 (153)
Q Consensus 73 WaGRlCifYALlkaGlAGS~~NP~vS~Le~gd~~~a~~~DLGFSKW~e~ 121 (153)
|.|=-+..=++|..|+.|- |+++. ||||-.+..+.+| +..|+|-
T Consensus 240 w~~L~~~i~~~l~~~l~G~---p~~g~-DigGf~~~~~~EL-~~RW~q~ 283 (338)
T d2f2ha4 240 YESMAESLRGGLSIGLSGF---GFWSH-DIGGFENTAPAHV-YKRWCAF 283 (338)
T ss_dssp HHHHHHHHHHHHHHHTTTC---CCEEE-ETTCSSSCCCHHH-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCC---CccCC-CcCCCCCCCCHHH-HHHHHHH
Confidence 4454577778899999997 45555 8887554555666 8899984
No 7
>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=11.36 E-value=23 Score=22.30 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=14.9
Q ss_pred HHHHHHhhCCCCceeehhhH
Q 031736 116 SKWLENIKGKPGLWVSFCFW 135 (153)
Q Consensus 116 SKW~e~i~GkP~kev~~~~~ 135 (153)
|+..++|+..| .|++|||
T Consensus 53 s~k~~~i~~np--~vsl~~~ 70 (135)
T d2fhqa1 53 SLKTIDFLSNP--KAGLCFQ 70 (135)
T ss_dssp SHHHHHHHHCC--EEEEEEE
T ss_pred ChHHHHHhcCC--eEEEEEE
Confidence 57789999988 6888886
No 8
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}
Probab=10.89 E-value=75 Score=23.05 Aligned_cols=15 Identities=47% Similarity=0.860 Sum_probs=13.1
Q ss_pred CCCCCccchHHHHHH
Q 031736 107 GSEGADLGFSKWLEN 121 (153)
Q Consensus 107 ~a~~~DLGFSKW~e~ 121 (153)
|.-+++||..+|+|.
T Consensus 51 g~v~~~lglr~~Le~ 65 (186)
T d2naca2 51 GSVSGELGLRKYLES 65 (186)
T ss_dssp SBTTTGGGCHHHHHH
T ss_pred ccccchhhHHHHHHH
Confidence 577889999999986
No 9
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.82 E-value=31 Score=20.66 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=13.9
Q ss_pred ccccchhhhhh---HHHHHHHHHhh
Q 031736 66 LLEAPLLWAGR---LCVYYALLKAG 87 (153)
Q Consensus 66 LLE~PVLWaGR---lCifYALlkaG 87 (153)
|-|+|.+||-| +=+.-.|++.|
T Consensus 1 ~c~tpL~~A~~~g~~~~v~~Ll~~g 25 (118)
T d1myoa_ 1 MCDKEFMWALKNGDLDEVKDYVAKG 25 (118)
T ss_dssp CCHHHHHHHHHTTCHHHHHHHHTTT
T ss_pred CCChHHHHHHHCCCHHHHHHHHHhh
Confidence 34788888854 34445566655
No 10
>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.54 E-value=1.4e+02 Score=20.81 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=20.2
Q ss_pred CCCCCcccccccCCCC--CCCCCccchHHHHHHhh
Q 031736 91 SQANPLVSDLESGGVT--GSEGADLGFSKWLENIK 123 (153)
Q Consensus 91 S~~NP~vS~Le~gd~~--~a~~~DLGFSKW~e~i~ 123 (153)
|.-||-.++-..+.++ .-..-|.-|.+|.|.|+
T Consensus 100 sklNPs~t~~~~~~~g~~~v~TDDvSl~~Fm~hL~ 134 (142)
T d2qtva4 100 SKLNPSDNYQDMARGGSTIVLTDDVSLQNFMTHLQ 134 (142)
T ss_dssp TTSBCCSCSSCSCCSSSCCCCCCCCCHHHHHHHHH
T ss_pred HhcCCCccccccccCCCCceecCccCHHHHHHHHH
Confidence 4568988875543222 23456777777777765
Done!