BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031739
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 251 bits (641), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 114/152 (75%), Positives = 133/152 (87%)
Query: 2 ASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLP 61
S LPRRI+KETQRLL+EP PGI A P E N RYF+V+I GP SP+EGG FKLELFLP
Sbjct: 2 GSAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLP 61
Query: 62 EDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 121
E+YPM+APKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD
Sbjct: 62 EEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 121
Query: 122 PLSDNIAKHWKADETEAVETAKEWTRLYASDG 153
PL++++A+ WK +E +A+ETA+ WTRLYA +
Sbjct: 122 PLANDVAEQWKTNEAQAIETARAWTRLYAMNN 153
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 249 bits (637), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 113/150 (75%), Positives = 132/150 (88%)
Query: 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPED 63
LPRRI+KETQRLL+EP PGI A P E N RYF+V+I GP SP+EGG FKLELFLPE+
Sbjct: 2 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEE 61
Query: 64 YPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 123
YPM+APKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL
Sbjct: 62 YPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 121
Query: 124 SDNIAKHWKADETEAVETAKEWTRLYASDG 153
++++A+ WK +E +A+ETA+ WTRLYA +
Sbjct: 122 ANDVAEQWKTNEAQAIETARAWTRLYAMNN 151
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 249 bits (636), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 113/150 (75%), Positives = 132/150 (88%)
Query: 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPED 63
LPRRI+KETQRLL+EP PGI A P E N RYF+V+I GP SP+EGG FKLELFLPE+
Sbjct: 5 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEE 64
Query: 64 YPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 123
YPM+APKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL
Sbjct: 65 YPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 124
Query: 124 SDNIAKHWKADETEAVETAKEWTRLYASDG 153
++++A+ WK +E +A+ETA+ WTRLYA +
Sbjct: 125 ANDVAEQWKTNEAQAIETARAWTRLYAMNN 154
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 249 bits (636), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 113/149 (75%), Positives = 132/149 (88%)
Query: 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPED 63
LPRRI+KETQRLL+EP PGI A P E N RYF+V+I GP SP+EGG FKLELFLPE+
Sbjct: 7 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEE 66
Query: 64 YPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 123
YPM+APKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL
Sbjct: 67 YPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 126
Query: 124 SDNIAKHWKADETEAVETAKEWTRLYASD 152
++++A+ WK +E +A+ETA+ WTRLYA +
Sbjct: 127 ANDVAEQWKTNEAQAIETARAWTRLYAMN 155
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 249 bits (635), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 113/148 (76%), Positives = 132/148 (89%)
Query: 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDY 64
LPRRI+KETQRLL+EP PGI A P E N RYF+V+I GP SP+EGG FKLELFLPE+Y
Sbjct: 1 GLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 60
Query: 65 PMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLS 124
PM+APKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL+
Sbjct: 61 PMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLA 120
Query: 125 DNIAKHWKADETEAVETAKEWTRLYASD 152
+++A+ WK +E +A+ETA+ WTRLYA +
Sbjct: 121 NDVAEQWKTNEAQAIETARAWTRLYAMN 148
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 225 bits (573), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 100/149 (67%), Positives = 129/149 (86%)
Query: 2 ASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLP 61
++ +LP+RI+KET++L+S+P PGI+A P +DN+RYF V I GP QSPYE G+F+LEL+LP
Sbjct: 2 SAASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLP 61
Query: 62 EDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 121
+DYPM APKVRFLTKIYHPNID+LGRICLD+LK WSPALQIRTVLLSIQALL++PNP+D
Sbjct: 62 DDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPND 121
Query: 122 PLSDNIAKHWKADETEAVETAKEWTRLYA 150
PL++++A+ W +E A A+EWT+LYA
Sbjct: 122 PLANDVAEDWIKNEQGAKAKAREWTKLYA 150
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 224 bits (570), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 100/147 (68%), Positives = 127/147 (86%)
Query: 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPED 63
+LP+RI+KET++L+S+P PGI+A P +DN+RYF V I GP QSPYE G+F+LEL+LP+D
Sbjct: 2 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 64 YPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 123
YPM APKVRFLTKIYHPNID+LGRICLD+LK WSPALQIRTVLLSIQALL++PNP+DPL
Sbjct: 62 YPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPL 121
Query: 124 SDNIAKHWKADETEAVETAKEWTRLYA 150
++++A+ W +E A A+EWT+LYA
Sbjct: 122 ANDVAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 221 bits (564), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 101/148 (68%), Positives = 121/148 (81%)
Query: 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYP 65
+PRRI KETQ L +EP PGI A P +N R+FN++I GP +PYEGG +KLELFLPE YP
Sbjct: 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYP 61
Query: 66 MSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSD 125
M PKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLS+P PDDPL
Sbjct: 62 MEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDS 121
Query: 126 NIAKHWKADETEAVETAKEWTRLYASDG 153
+A+H+K D+ +A A++W ++YA++
Sbjct: 122 KVAEHFKQDKNDAEHVARQWNKIYANNN 149
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 221 bits (563), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 101/148 (68%), Positives = 121/148 (81%)
Query: 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYP 65
+PRRI KETQ L +EP PGI A P +N R+FN++I GP +PYEGG +KLELFLPE YP
Sbjct: 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYP 61
Query: 66 MSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSD 125
M PKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLS+P PDDPL
Sbjct: 62 MEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDS 121
Query: 126 NIAKHWKADETEAVETAKEWTRLYASDG 153
+A+H+K D+ +A A++W ++YA++
Sbjct: 122 KVAEHFKQDKNDAEHVARQWNKIYANNN 149
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 220 bits (560), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 99/147 (67%), Positives = 126/147 (85%)
Query: 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPED 63
+LP+RI+KET++L+S+P PGI+A P +DN+RYF V I GP QSPYE G+F+LEL+LP+D
Sbjct: 2 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 64 YPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 123
YPM APKVRFLTKIYHPNID+LGRI LD+LK WSPALQIRTVLLSIQALL++PNP+DPL
Sbjct: 62 YPMEAPKVRFLTKIYHPNIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPL 121
Query: 124 SDNIAKHWKADETEAVETAKEWTRLYA 150
++++A+ W +E A A+EWT+LYA
Sbjct: 122 ANDVAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 218 bits (554), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 98/147 (66%), Positives = 125/147 (85%)
Query: 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPED 63
+LP+RI+KET++L+S+P PGI+A P +DN+RYF V I GP QSPYE G+F+LEL+LP+D
Sbjct: 2 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 64 YPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 123
YPM APKVRFLTKIYHP ID+LGRI LD+LK WSPALQIRTVLLSIQALL++PNP+DPL
Sbjct: 62 YPMEAPKVRFLTKIYHPAIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPL 121
Query: 124 SDNIAKHWKADETEAVETAKEWTRLYA 150
++++A+ W +E A A+EWT+LYA
Sbjct: 122 ANDVAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 159 bits (401), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 77/143 (53%), Positives = 94/143 (65%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI KE L +P SA P D+M ++ I+GP SPY GGVF L + P DYP
Sbjct: 24 KRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFK 83
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PKV F TKIYHPNI+ G ICLDILKD+WSPAL I VLLSI +LL+ PNPDDPL I
Sbjct: 84 PPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEI 143
Query: 128 AKHWKADETEAVETAKEWTRLYA 150
A +K+D +TA+EW++ YA
Sbjct: 144 AHLYKSDRMRYDQTAREWSQKYA 166
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 158 bits (400), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 73/143 (51%), Positives = 100/143 (69%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
RRI KE + + +P SA P D++ ++ I GP SPY+GG+F L++ P DYP
Sbjct: 7 RRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFK 66
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
AP+V F+TK+YHPNI+K G ICLDILKD+WSPAL + VLLSI +LL+ PNP DPL +
Sbjct: 67 APRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEV 126
Query: 128 AKHWKADETEAVETAKEWTRLYA 150
A +A++ + +TA+EWTR+YA
Sbjct: 127 ANVLRANKKQFEDTAREWTRMYA 149
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 155 bits (391), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/143 (52%), Positives = 96/143 (67%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI KE Q L +P SA P D++ ++ I+GPS SPY+GGVF L + P DYP
Sbjct: 9 KRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFK 68
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PKV F TKIYHPNI+ G ICLDIL+ +WSPAL + VLLSI +LL PNPDDPL +I
Sbjct: 69 PPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 128
Query: 128 AKHWKADETEAVETAKEWTRLYA 150
A +K+D+ + A+EWT+ YA
Sbjct: 129 AHIYKSDKEKYNRLAREWTQKYA 151
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 95/146 (65%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI +E L +P SA P D++ ++ I+GP+ SPY GGVF L + P DYP
Sbjct: 4 KRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PKV F T+IYHPNI+ G ICLDIL+D+WSPAL I VLLSI +LL+ PNPDDPL I
Sbjct: 64 PPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPLVPEI 123
Query: 128 AKHWKADETEAVETAKEWTRLYASDG 153
A +K D + +A+EWTR YA G
Sbjct: 124 AHVYKTDRSRYELSAREWTRKYAIHG 149
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 152 bits (385), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 94/143 (65%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI KE Q L +P SA P D++ ++ I+GP +SPY+GGVF L + P DYP
Sbjct: 7 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 66
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 67 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 126
Query: 128 AKHWKADETEAVETAKEWTRLYA 150
A+ +K D + A+EWT+ YA
Sbjct: 127 ARIYKTDRERYNQLAREWTQKYA 149
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 152 bits (385), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 93/143 (65%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI KE L +P SA P D++ ++ I+GP+ SPY GGVF L + P DYP
Sbjct: 5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFK 64
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PK+ F TKIYHPNI+ G ICLDILKD+WSPAL + VLLSI +LL+ NPDDPL I
Sbjct: 65 PPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEI 124
Query: 128 AKHWKADETEAVETAKEWTRLYA 150
A +K D + TA+EWT+ YA
Sbjct: 125 AHIYKTDRPKYEATAREWTKKYA 147
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 152 bits (384), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 93/143 (65%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI KE L +P SA P D+M ++ I+GP+ SPY+GGVF L + P DYP
Sbjct: 9 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 68
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 69 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 128
Query: 128 AKHWKADETEAVETAKEWTRLYA 150
A+ +K D + A+EWT+ YA
Sbjct: 129 ARIYKTDREKYNRIAREWTQKYA 151
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 152 bits (384), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 78/154 (50%), Positives = 97/154 (62%), Gaps = 6/154 (3%)
Query: 3 SGNLPR------RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKL 56
SG +PR RI KE L +P SA P D+M ++ I+GP+ SPY+GGVF L
Sbjct: 11 SGLVPRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFL 70
Query: 57 ELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 116
+ P DYP PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL
Sbjct: 71 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD 130
Query: 117 PNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 150
PNPDDPL IA+ +K D + A+EWT+ YA
Sbjct: 131 PNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 164
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 152 bits (384), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 93/143 (65%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI KE L +P SA P D+M ++ I+GP+ SPY+GGVF L + P DYP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 128 AKHWKADETEAVETAKEWTRLYA 150
A+ +K D + A+EWT+ YA
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYA 148
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 152 bits (384), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 93/143 (65%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI KE L +P SA P D+M ++ I+GP+ SPY+GGVF L + P DYP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 128 AKHWKADETEAVETAKEWTRLYA 150
A+ +K D + A+EWT+ YA
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYA 148
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 152 bits (384), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 93/143 (65%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI KE L +P SA P D+M ++ I+GP+ SPY+GGVF L + P DYP
Sbjct: 4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 128 AKHWKADETEAVETAKEWTRLYA 150
A+ +K D + A+EWT+ YA
Sbjct: 124 ARIYKTDREKYNRIAREWTQKYA 146
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 151 bits (382), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/147 (50%), Positives = 95/147 (64%)
Query: 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPED 63
G+ +RI KE L +P SA P D+M ++ I+GP+ SPY+GGVF L + P D
Sbjct: 2 GSALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD 61
Query: 64 YPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 123
YP PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL
Sbjct: 62 YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL 121
Query: 124 SDNIAKHWKADETEAVETAKEWTRLYA 150
IA+ +K D + ++EWT+ YA
Sbjct: 122 VPEIARIYKTDRDKYNRISREWTQKYA 148
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 151 bits (381), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/143 (51%), Positives = 93/143 (65%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI KE L +P SA P D+M ++ I+GP+ SPY+GGVF L + P DYP
Sbjct: 14 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 73
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 74 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 133
Query: 128 AKHWKADETEAVETAKEWTRLYA 150
A+ ++ D + A+EWT+ YA
Sbjct: 134 ARIYQTDREKYNRIAREWTQKYA 156
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 151 bits (381), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/143 (51%), Positives = 93/143 (65%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI KE L +P SA P D+M ++ I+GP+ SPY+GGVF L + P DYP
Sbjct: 14 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 73
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 74 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 133
Query: 128 AKHWKADETEAVETAKEWTRLYA 150
A+ +K D + ++EWT+ YA
Sbjct: 134 ARIYKTDRDKYNRISREWTQKYA 156
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 150 bits (380), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/143 (51%), Positives = 92/143 (64%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI KE L +P SA P D+M ++ I+GP+ SPY+GGVF L + P DYP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PKV F T+IYHPNI+ G ICLDIL+ +W PAL I VLLSI +LL PNPDDPL I
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 128 AKHWKADETEAVETAKEWTRLYA 150
A+ +K D + A+EWT+ YA
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYA 148
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 150 bits (380), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/143 (51%), Positives = 93/143 (65%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI KE L +P SA P D+M ++ I+GP+ SPY+GGVF L + P DYP
Sbjct: 12 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 71
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 72 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 131
Query: 128 AKHWKADETEAVETAKEWTRLYA 150
A+ +K D + ++EWT+ YA
Sbjct: 132 ARIYKTDRDKYNRISREWTQKYA 154
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 150 bits (380), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/143 (51%), Positives = 93/143 (65%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI KE L +P SA P D+M ++ I+GP+ SPY+GGVF L + P DYP
Sbjct: 3 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 63 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 122
Query: 128 AKHWKADETEAVETAKEWTRLYA 150
A+ +K D + ++EWT+ YA
Sbjct: 123 ARIYKTDRDKYNRISREWTQKYA 145
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 150 bits (378), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 73/143 (51%), Positives = 92/143 (64%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI KE L +P SA P D+M ++ I+GP+ SPY+GGVF L + P DYP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PKV F T+IYHPNI+ G ICLD L+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 128 AKHWKADETEAVETAKEWTRLYA 150
A+ +K D + A+EWT+ YA
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYA 148
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 150 bits (378), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 73/143 (51%), Positives = 92/143 (64%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI KE L +P SA P D+M ++ +GP+ SPY+GGVF L + P DYP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 128 AKHWKADETEAVETAKEWTRLYA 150
A+ +K D + A+EWT+ YA
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYA 148
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 149 bits (377), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 93/146 (63%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI KE L +P SA P D+M ++ I+GP+ SPY+GGVF L + P DYP
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PKV F T+IYHPNI+ G I LDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 66 PPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 128 AKHWKADETEAVETAKEWTRLYASDG 153
A+ +K D + A+EWT+ YA G
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYAMGG 151
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 148 bits (374), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 73/143 (51%), Positives = 93/143 (65%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI KE L +P SA P D+M ++ I+GP+ SPY+GGVF L + P DYP
Sbjct: 3 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PKV F T+IYHPNI+ G I LDIL+ +WSPAL+I VLLSI +LL PNPDDPL I
Sbjct: 63 PPKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVPEI 122
Query: 128 AKHWKADETEAVETAKEWTRLYA 150
A+ +K D + A+EWT+ YA
Sbjct: 123 ARIYKTDREKYNRIAREWTQKYA 145
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 148 bits (373), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/143 (51%), Positives = 92/143 (64%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI KE L +P SA P D+M ++ I+GP+ SPY+GGVF L + P DYP
Sbjct: 7 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 66
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PKV F T+IYHPNI+ G I LDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 67 PPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 126
Query: 128 AKHWKADETEAVETAKEWTRLYA 150
A+ +K D + A+EWT+ YA
Sbjct: 127 ARIYKTDREKYNRIAREWTQKYA 149
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 148 bits (373), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 98/154 (63%), Gaps = 6/154 (3%)
Query: 3 SGNLPR------RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKL 56
SG +PR RI KE L +P SA P D++ ++ I+GP S Y+GGVF L
Sbjct: 11 SGLVPRGSMALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFL 70
Query: 57 ELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 116
+ P DYP PK+ F TKIYHPNI+ G ICLDIL+ +WSPAL + VLLSI +LL
Sbjct: 71 TVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCD 130
Query: 117 PNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 150
PNPDDPL +IA+ +K+D+ + A+EWT+ YA
Sbjct: 131 PNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 164
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 147 bits (372), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 96/154 (62%), Gaps = 6/154 (3%)
Query: 3 SGNLPR------RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKL 56
SG +PR RI KE L +P SA P D+M ++ I+GP+ SPY+GGVF L
Sbjct: 11 SGLVPRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFL 70
Query: 57 ELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 116
+ P DYP PKV F T+IYHPNI+ G I LDIL+ +WSPAL I VLLSI +LL
Sbjct: 71 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLLCD 130
Query: 117 PNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 150
PNPDDPL IA+ +K D + A+EWT+ YA
Sbjct: 131 PNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 164
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 147 bits (371), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 94/143 (65%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI KE L +P SA P D++ ++ I+GP S Y+GGVF L + P DYP
Sbjct: 10 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 69
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PK+ F TKIYHPNI+ G ICLDIL+ +WSPAL + VLLSI +LL PNPDDPL +I
Sbjct: 70 PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 129
Query: 128 AKHWKADETEAVETAKEWTRLYA 150
A+ +K+D+ + A+EWT+ YA
Sbjct: 130 AQIYKSDKEKYNRHAREWTQKYA 152
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 147 bits (371), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 94/143 (65%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI KE L +P SA P D++ ++ I+GP S Y+GGVF L + P DYP
Sbjct: 6 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 65
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PK+ F TKIYHPNI+ G ICLDIL+ +WSPAL + VLLSI +LL PNPDDPL +I
Sbjct: 66 PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 125
Query: 128 AKHWKADETEAVETAKEWTRLYA 150
A+ +K+D+ + A+EWT+ YA
Sbjct: 126 AQIYKSDKEKYNRHAREWTQKYA 148
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 146 bits (369), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 72/143 (50%), Positives = 92/143 (64%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI KE L +P SA P D+M ++ I+GP+ SPY+GGVF L + P DYP
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PKV F T+IYHPNI+ G I LDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 64 PPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 128 AKHWKADETEAVETAKEWTRLYA 150
A+ +K D + ++EWT+ YA
Sbjct: 124 ARIYKTDRDKYNRISREWTQKYA 146
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 145 bits (366), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 95/146 (65%), Gaps = 4/146 (2%)
Query: 9 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSA 68
R+ +E L +EP PGI+ +D M ILG + +PYE GVFKLE+ +PE YP
Sbjct: 8 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEP 67
Query: 69 PKVRFLTKIYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPNPDDPLS 124
P++RFLT IYHPNID GRICLD+L K W P+L I TVL SIQ L+S PNPDDPL
Sbjct: 68 PQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLM 127
Query: 125 DNIAKHWKADETEAVETAKEWTRLYA 150
+I+ +K ++ ++ A++WT +A
Sbjct: 128 ADISSEFKYNKPAFLKNARQWTEKHA 153
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 142 bits (359), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 90/143 (62%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI KE L +P A P D+M ++ I+GP+ SPY+GGVF L + P DYP
Sbjct: 4 KRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PKV F T+IYHP I+ G I LDIL+ +WSPAL I VLLSI +LL PNPDDPL I
Sbjct: 64 PPKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 128 AKHWKADETEAVETAKEWTRLYA 150
A+ +K D + A+EWT+ YA
Sbjct: 124 ARIYKTDREKYNRIAREWTQKYA 146
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/143 (48%), Positives = 92/143 (64%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI KE L +P A P D++ ++ I+GP S Y+GGVF L + P DYP
Sbjct: 10 KRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 69
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PK+ F TKIYHPNI+ G I LDIL+ +WSPAL + VLLSI +LL PNPDDPL +I
Sbjct: 70 PPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 129
Query: 128 AKHWKADETEAVETAKEWTRLYA 150
A+ +K+D+ + A+EWT+ YA
Sbjct: 130 AQIYKSDKEKYNRHAREWTQKYA 152
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 140 bits (352), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 71/144 (49%), Positives = 89/144 (61%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI KE + +P P SA P DN+ + ILGP S YEGGVF L++ DYP
Sbjct: 6 KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFK 65
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PKV F T+IYH NI+ G ICLDILKD WSPAL I VLLSI +LL+ NP DPL +I
Sbjct: 66 PPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSI 125
Query: 128 AKHWKADETEAVETAKEWTRLYAS 151
A + + E A++WT+ YA+
Sbjct: 126 ATQYMTNRAEHDRMARQWTKRYAT 149
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 94/144 (65%), Gaps = 1/144 (0%)
Query: 9 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSA 68
R+ KE + + +E I A + N + I GP +PYEGG F L + +P DYP +
Sbjct: 27 RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP 86
Query: 69 PKVRFLTKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PK++F+TKI+HPNI + G ICLD+LK++WSPAL IRT LLSIQALLS P PDDP +
Sbjct: 87 PKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEV 146
Query: 128 AKHWKADETEAVETAKEWTRLYAS 151
AK +K + V+TA WT+ +A+
Sbjct: 147 AKMYKENHALFVKTASVWTKTFAT 170
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/144 (48%), Positives = 89/144 (61%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+RI KE + +P P SA P DN+ + ILGP S YEGGVF L++ +YP
Sbjct: 51 KRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFK 110
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
PKV F T+IYH NI+ G ICLDILKD WSPAL I VLLSI +LL+ NP DPL +I
Sbjct: 111 PPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSI 170
Query: 128 AKHWKADETEAVETAKEWTRLYAS 151
A + + E A++WT+ YA+
Sbjct: 171 ATQYMTNRAEHDRMARQWTKRYAT 194
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 132 bits (333), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 96/146 (65%), Gaps = 2/146 (1%)
Query: 8 RRIVKETQRLLSEPAPGISAS-PAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPM 66
+RI+KE Q + +PA I+ +E ++ + LGP +PYEGG F +++ +P +YP
Sbjct: 4 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63
Query: 67 SAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSD 125
PK++F TK+YHPNI + G ICLDILK+ WSP + +++ L+S+QALL +P P+DP
Sbjct: 64 KPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDA 123
Query: 126 NIAKHWKADETEAVETAKEWTRLYAS 151
+A+H+ D +TA WTRLYAS
Sbjct: 124 EVAQHYLRDRESFNKTAALWTRLYAS 149
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 132 bits (333), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 97/147 (65%), Gaps = 2/147 (1%)
Query: 8 RRIVKETQRLLSEPAPGISAS-PAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPM 66
+RI+KE Q + +PA I+ +E ++ + LGP +PYEGG F +++ +P +YP
Sbjct: 5 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 64
Query: 67 SAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSD 125
PK++F TK+YHPNI + G ICLDIL++ WSP + +++ L+S+QALL +P P+DP
Sbjct: 65 KPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDA 124
Query: 126 NIAKHWKADETEAVETAKEWTRLYASD 152
+A+H+ D +TA WTRLYAS+
Sbjct: 125 EVAQHYLRDRESFNKTAALWTRLYASE 151
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 127 bits (319), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 96/167 (57%), Gaps = 21/167 (12%)
Query: 7 PRRIVKETQRLL--------------SEPAP------GISASPAEDNMRYFNVMILGPSQ 46
PR +E RLL SEPA G+SA ++ + I GP
Sbjct: 27 PRGTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLG 86
Query: 47 SPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID-KLGRICLDILKDKWSPALQIRT 105
+PYEGG F L++ +P DYP + PK++F+TKI+HPNI + G ICLDILK +WSPAL IRT
Sbjct: 87 TPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRT 146
Query: 106 VLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 152
LLSIQA+L+ P P DP +AK + V+TAK WT +A +
Sbjct: 147 ALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFAKE 193
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 127 bits (319), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 89/130 (68%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
RR++++ +RL +P G+S +P+E+N+ +N +I GP +P+E G FKL + E+YP
Sbjct: 7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNK 66
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
P VRFL+K++HPN+ G ICLDIL+++WSP + ++L SIQ+LL PNP+ P +
Sbjct: 67 PPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQA 126
Query: 128 AKHWKADETE 137
A+ ++ ++ E
Sbjct: 127 AQLYQENKRE 136
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 127 bits (318), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 92/137 (67%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
RR++++ +R+ + PG+SASP DN+ +N MI+GP+ +PYE G F+L L E+YP
Sbjct: 7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNK 66
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
P V+FL++++HPN+ G ICLDIL+++W+P + ++L SIQ+L + PNP P +
Sbjct: 67 PPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEA 126
Query: 128 AKHWKADETEAVETAKE 144
A +K +++ V+ KE
Sbjct: 127 ATLFKDHKSQYVKRVKE 143
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 125 bits (315), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 86/130 (66%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+R++++ +RL +P GIS +P ++N+ +N +I GP +P++GG FKL L EDYP
Sbjct: 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNK 66
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
P VRF+++++HPNI G ICLDIL+++WSP + +L SIQ+LL PNP+ P +
Sbjct: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126
Query: 128 AKHWKADETE 137
A+ + + E
Sbjct: 127 ARMYSESKRE 136
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 123 bits (308), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 86/130 (66%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
RR++++ ++L +P G+S +P EDN+ + +I GP ++P+E G FKL L E+YP
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
P V+F++K++HPN+ G ICLDIL+++WSP + +L SIQ+LL PNP+ P +
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLA 126
Query: 128 AKHWKADETE 137
A+ ++ + E
Sbjct: 127 AQLYQENRRE 136
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 123 bits (308), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 86/130 (66%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
RR++++ ++L +P G+S +P EDN+ + +I GP ++P+E G FKL L E+YP
Sbjct: 10 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 69
Query: 68 APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNI 127
P V+F++K++HPN+ G ICLDIL+++WSP + +L SIQ+LL PNP+ P +
Sbjct: 70 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLA 129
Query: 128 AKHWKADETE 137
A+ ++ + E
Sbjct: 130 AQLYQENRRE 139
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 116 bits (290), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 80/131 (61%)
Query: 2 ASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLP 61
A G + +R+ +E L+ GISA P DN+ + I G + + YE +KL L P
Sbjct: 27 ARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFP 86
Query: 62 EDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 121
YP +AP V+FLT YHPN+D G I LDILK+KWS +RT+LLSIQ+LL PN D
Sbjct: 87 SGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDS 146
Query: 122 PLSDNIAKHWK 132
PL+ + A+ WK
Sbjct: 147 PLNTHAAELWK 157
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 87/150 (58%), Gaps = 4/150 (2%)
Query: 5 NLP----RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFL 60
NLP R + KE L ++P GI P E+++ V I GP +PY GG+F+++L L
Sbjct: 9 NLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLL 68
Query: 61 PEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPD 120
+D+P S PK FLTKI+HPN+ G IC+++LK W+ L IR VLL+I+ LL PNP+
Sbjct: 69 GKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPE 128
Query: 121 DPLSDNIAKHWKADETEAVETAKEWTRLYA 150
L++ + + E A+ T ++
Sbjct: 129 SALNEEAGRLLLENYEEYAARARLLTEIHG 158
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 112 bits (281), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 87/148 (58%), Gaps = 1/148 (0%)
Query: 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDY 64
++ +R+ +E + LL PGI+A P DN+ + + GP + YE +KL L P DY
Sbjct: 9 SVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDY 68
Query: 65 PMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLS 124
P P V+F T +HPN+D+ G ICLDILK+ W+ + +RT+LLS+Q+LL PN PL+
Sbjct: 69 PYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLN 128
Query: 125 DNIAKHWKADETEAVETAKEWTRLYASD 152
A W +++TE + E + SD
Sbjct: 129 AQAADMW-SNQTEYKKVLHEKYKTAQSD 155
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 96/156 (61%), Gaps = 5/156 (3%)
Query: 1 MASGNLP-RRIVKETQRLLSEPAPG---ISASPAEDNMRYFNVMILGPSQSPYEGGVFKL 56
MA N+ +RI +E + +L I ++N I GP +PYEGG ++L
Sbjct: 3 MAMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQL 62
Query: 57 ELFLPEDYPMSAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLS 115
E+ +PE YP + PKVRF+TKI+HPNI + G ICLDILKD+W+ A+ +RTVLLS+QALL+
Sbjct: 63 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLA 122
Query: 116 APNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 151
A PDDP +A +K + +TA+ W +YA
Sbjct: 123 AAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG 158
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 92/148 (62%), Gaps = 4/148 (2%)
Query: 8 RRIVKETQRLLSEPAPG---ISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDY 64
+RI +E + +L I ++N I GP +PYEGG ++LE+ +PE Y
Sbjct: 24 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETY 83
Query: 65 PMSAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 123
P + PKVRF+TKI+HPNI + G ICLDILKD+W+ A+ +RTVLLS+QALL+A PDDP
Sbjct: 84 PFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQ 143
Query: 124 SDNIAKHWKADETEAVETAKEWTRLYAS 151
+A +K + +TA+ W +YA
Sbjct: 144 DAVVANQYKQNPEMFKQTARLWAHVYAG 171
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 110 bits (274), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 92/147 (62%), Gaps = 4/147 (2%)
Query: 8 RRIVKETQRLLSEPAPG---ISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDY 64
+RI +E + +L I ++N I GP +PYEGG ++LE+ +PE Y
Sbjct: 60 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETY 119
Query: 65 PMSAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 123
P + PKVRF+TKI+HPNI + G ICLDILKD+W+ A+ +RTVLLS+QALL+A PDDP
Sbjct: 120 PFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQ 179
Query: 124 SDNIAKHWKADETEAVETAKEWTRLYA 150
+A +K + +TA+ W +YA
Sbjct: 180 DAVVANQYKQNPEMFKQTARLWAHVYA 206
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 110 bits (274), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 92/147 (62%), Gaps = 4/147 (2%)
Query: 8 RRIVKETQRLLSEPAPG---ISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDY 64
+RI +E + +L I ++N I GP +PYEGG ++LE+ +PE Y
Sbjct: 9 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETY 68
Query: 65 PMSAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 123
P + PKVRF+TKI+HPNI + G ICLDILKD+W+ A+ +RTVLLS+QALL+A PDDP
Sbjct: 69 PFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQ 128
Query: 124 SDNIAKHWKADETEAVETAKEWTRLYA 150
+A +K + +TA+ W +YA
Sbjct: 129 DAVVANQYKQNPEMFKQTARLWAHVYA 155
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 92/147 (62%), Gaps = 4/147 (2%)
Query: 8 RRIVKETQRLLSEPAPG---ISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDY 64
+RI +E + +L I ++N I GP +PYEGG ++LE+ +PE Y
Sbjct: 8 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETY 67
Query: 65 PMSAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 123
P + PKVRF+TKI+HPNI + G ICLDILKD+W+ A+ +RTVLLS+QALL+A PDDP
Sbjct: 68 PFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQ 127
Query: 124 SDNIAKHWKADETEAVETAKEWTRLYA 150
+A +K + +TA+ W +YA
Sbjct: 128 DAVVANQYKQNPEMFKQTARLWAHVYA 154
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 105 bits (263), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 82/139 (58%), Gaps = 14/139 (10%)
Query: 12 KETQRLLSEPAPGISASPAEDNMRY-FNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPK 70
++ L P G SA +DN Y + V+I+GP + YEGGVFK L P+DYP+ PK
Sbjct: 24 RQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPK 83
Query: 71 VRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAP 117
++F+T+I+HPN+DK G +C+ IL +++W P + T+++S+ ++L+ P
Sbjct: 84 MKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP 143
Query: 118 NPDDPLSDNIAKHWKADET 136
N D P + + AK W+ D
Sbjct: 144 NGDSPANVDAAKEWREDRN 162
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 74/117 (63%), Gaps = 2/117 (1%)
Query: 37 FNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL-GRICLDILKD 95
F+VM GP+ + YEGG++K+ + LP+DYP ++P + F+ K+ HPN+D+ G +CLD++
Sbjct: 31 FDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQ 90
Query: 96 KWSPALQIRTVL-LSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 151
W+P + V + + LL+ PNP DPL+ + A D+ E KE+ +LYAS
Sbjct: 91 TWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYAS 147
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 86/156 (55%), Gaps = 14/156 (8%)
Query: 3 SGNLPRRIVKETQRLLSEPAPGISASPA-EDNMRYFNVMILGPSQSPYEGGVFKLELFLP 61
+G +R++ E ++L P GI A P E+N + +I+GP + +E GVF L P
Sbjct: 5 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFP 64
Query: 62 EDYPMSAPKVRFLTKIYHPNIDKLGRICLDILK-------------DKWSPALQIRTVLL 108
DYP+S PK+RF +++HPNI GR+C+ IL ++WSP + +LL
Sbjct: 65 LDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILL 124
Query: 109 SIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKE 144
S+ ++L+ PN + + + +K W+ D + + AK+
Sbjct: 125 SVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 160
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 86/156 (55%), Gaps = 14/156 (8%)
Query: 3 SGNLPRRIVKETQRLLSEPAPGISASPA-EDNMRYFNVMILGPSQSPYEGGVFKLELFLP 61
+G +R++ E ++L P GI A P E+N + +I+GP + +E GVF L P
Sbjct: 7 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFP 66
Query: 62 EDYPMSAPKVRFLTKIYHPNIDKLGRICLDILK-------------DKWSPALQIRTVLL 108
DYP+S PK+RF +++HPNI GR+C+ IL ++WSP + +LL
Sbjct: 67 LDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILL 126
Query: 109 SIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKE 144
S+ ++L+ PN + + + +K W+ D + + AK+
Sbjct: 127 SVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 162
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 86/156 (55%), Gaps = 14/156 (8%)
Query: 3 SGNLPRRIVKETQRLLSEPAPGISASPA-EDNMRYFNVMILGPSQSPYEGGVFKLELFLP 61
+G +R++ E ++L P GI A P E+N + +I+GP + +E GVF L P
Sbjct: 1 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFP 60
Query: 62 EDYPMSAPKVRFLTKIYHPNIDKLGRICLDILK-------------DKWSPALQIRTVLL 108
DYP+S PK+RF +++HPNI GR+C+ IL ++WSP + +LL
Sbjct: 61 LDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILL 120
Query: 109 SIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKE 144
S+ ++L+ PN + + + +K W+ D + + AK+
Sbjct: 121 SVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 156
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 86/156 (55%), Gaps = 14/156 (8%)
Query: 3 SGNLPRRIVKETQRLLSEPAPGISASPA-EDNMRYFNVMILGPSQSPYEGGVFKLELFLP 61
+G +R++ E ++L P GI A P E+N + +I+GP + +E GVF L P
Sbjct: 4 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFP 63
Query: 62 EDYPMSAPKVRFLTKIYHPNIDKLGRICLDILK-------------DKWSPALQIRTVLL 108
DYP+S PK+RF +++HPNI GR+C+ IL ++WSP + +LL
Sbjct: 64 LDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILL 123
Query: 109 SIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKE 144
S+ ++L+ PN + + + +K W+ D + + AK+
Sbjct: 124 SVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 159
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 14/150 (9%)
Query: 8 RRIVKETQRLLSEPAPGISASP-AEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPM 66
+R++KE Q+L+ + PGI A P +E+N+ ++ +I GP +PY GVF +L P+DYP+
Sbjct: 7 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPL 66
Query: 67 SAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQAL 113
S PK+ F I HPNI G +C+ IL +++WSP + +LLS+ ++
Sbjct: 67 SPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSM 126
Query: 114 LSAPNPDDPLSDNIAKHWKADETEAVETAK 143
LS PN + + + W+ + E K
Sbjct: 127 LSEPNIESGANIDACILWRDNRPEFERQVK 156
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 95.9 bits (237), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 41 ILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILK-DKWSP 99
++ P PY+ G F++E+ P +YP PK+ F TKIYHPNID+ G++CL ++ + W P
Sbjct: 40 LIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKP 99
Query: 100 ALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 151
A + V+ S+ AL++ P P+ PL ++A+ + D + + A+E+T+ Y
Sbjct: 100 ATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGE 151
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 95.9 bits (237), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 41 ILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILK-DKWSP 99
++ P PY+ G F++E+ P +YP PK+ F TKIYHPNID+ G++CL ++ + W P
Sbjct: 38 LIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKP 97
Query: 100 ALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 151
A + V+ S+ AL++ P P+ PL ++A+ + D + + A+E+T+ Y
Sbjct: 98 ATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGE 149
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 78/141 (55%), Gaps = 14/141 (9%)
Query: 21 PAPGISASPAEDNMRY-FNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79
P G SA +DN Y + V+++GP + YEGG FK L P DYP PK++F+++I+H
Sbjct: 19 PVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWH 78
Query: 80 PNIDKLGRICLDILKD-------------KWSPALQIRTVLLSIQALLSAPNPDDPLSDN 126
PNIDK G +C+ IL D +W P + T+LLS+ ++L+ PN + P + +
Sbjct: 79 PNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVD 138
Query: 127 IAKHWKADETEAVETAKEWTR 147
AK + + E + + R
Sbjct: 139 AAKMQRENYAEFKKKVAQCVR 159
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
Query: 37 FNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL-GRICLDILKD 95
F V GP +PYEGGV+K+ + LP+ YP +P + F+ KI+HPNID+ G +CLD++
Sbjct: 53 FVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQ 112
Query: 96 KWSPALQIRTVLLS-IQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 152
W+ + + S + LL+ PNP DPL+ + A + E + KE+ + YA++
Sbjct: 113 TWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATE 170
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 79/149 (53%), Gaps = 17/149 (11%)
Query: 1 MASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRY-FNVMILGPSQSPYEGGVFKLELF 59
M S + + ++ E + L EP G + ++ Y + V I GP + YEGG FK L
Sbjct: 3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLK 62
Query: 60 LPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILK-------------DKWSPALQIRTV 106
P DYP S P RFLTK++HPNI + G +C+ IL ++W+P +RT+
Sbjct: 63 FPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTI 122
Query: 107 LLSIQALLSAPNPDDPLSDN---IAKHWK 132
LLS+ +LL+ PN P + + + + WK
Sbjct: 123 LLSVISLLNEPNTFSPANVDASVMYRKWK 151
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 89.7 bits (221), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 17/142 (11%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRY-FNVMILGPSQSPYEGGVFKLELFLPEDYPM 66
+ ++ E + L EP G + ++ Y + V I GP + YEGG FK L P DYP
Sbjct: 7 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 66
Query: 67 SAPKVRFLTKIYHPNIDKLGRICLDILK-------------DKWSPALQIRTVLLSIQAL 113
S P RFLTK++HPNI + G +C+ IL ++W+P +RT+LLS+ +L
Sbjct: 67 SPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISL 126
Query: 114 LSAPNPDDPLSDN---IAKHWK 132
L+ PN P + + + + WK
Sbjct: 127 LNEPNTFSPANVDASVMYRKWK 148
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 86.3 bits (212), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
Query: 3 SGNLPRRIVKETQRLLSEPAPGISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLE 57
SG R+ +E + + G A P ++ N+ + I G +P+EGG+FKL
Sbjct: 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 58 LFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLS 115
+ +DYP S PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+
Sbjct: 65 MLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 116 APNPDDP 122
PN DP
Sbjct: 125 EPNIQDP 131
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
Query: 3 SGNLPRRIVKETQRLLSEPAPGISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLE 57
SG R+ +E + + G A P ++ N+ + I G +P+EGG+FKL
Sbjct: 4 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 63
Query: 58 LFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLS 115
+ +DYP S PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+
Sbjct: 64 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 123
Query: 116 APNPDDP 122
PN DP
Sbjct: 124 EPNIQDP 130
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 81/146 (55%), Gaps = 3/146 (2%)
Query: 9 RIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
R+VKE + L +P P + ++D N+ ++ ++L P Q PY F L + P +YP
Sbjct: 8 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFK 66
Query: 68 APKVRFLTKIYHPNIDKLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDN 126
P ++F TKIYHPN+D+ G+ICL I+ + W P + VL ++ L++ PN +PL +
Sbjct: 67 PPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMD 126
Query: 127 IAKHWKADETEAVETAKEWTRLYASD 152
+A + + A+E+T + D
Sbjct: 127 LADLLTQNPELFRKNAEEFTLRFGVD 152
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
Query: 3 SGNLPRRIVKETQRLLSEPAPGISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLE 57
SG R+ +E + + G A P ++ N+ + I G +P+EGG+FKL
Sbjct: 3 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 62
Query: 58 LFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLS 115
+ +DYP S PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+
Sbjct: 63 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 122
Query: 116 APNPDDP 122
PN DP
Sbjct: 123 EPNIQDP 129
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 81/146 (55%), Gaps = 3/146 (2%)
Query: 9 RIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
R+VKE + L +P P + ++D N+ ++ ++L P Q PY F L + P +YP
Sbjct: 5 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFK 63
Query: 68 APKVRFLTKIYHPNIDKLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLSDN 126
P ++F TKIYHPN+D+ G+ICL I+ + W P + VL ++ L++ PN +PL +
Sbjct: 64 PPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMD 123
Query: 127 IAKHWKADETEAVETAKEWTRLYASD 152
+A + + A+E+T + D
Sbjct: 124 LADLLTQNPELFRKNAEEFTLRFGVD 149
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
Query: 3 SGNLPRRIVKETQRLLSEPAPGISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLE 57
SG R+ +E + + G A P ++ N+ + I G +P+EGG+FKL
Sbjct: 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 58 LFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLS 115
+ +DYP S PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+
Sbjct: 65 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 116 APNPDDP 122
PN DP
Sbjct: 125 EPNIQDP 131
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
Query: 3 SGNLPRRIVKETQRLLSEPAPGISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLE 57
SG R+ +E + + G A P ++ N+ + I G +P+EGG+FKL
Sbjct: 4 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 63
Query: 58 LFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLS 115
+ +DYP S PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+
Sbjct: 64 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 123
Query: 116 APNPDDP 122
PN DP
Sbjct: 124 EPNIQDP 130
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
Query: 3 SGNLPRRIVKETQRLLSEPAPGISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLE 57
SG R+ +E + + G A P ++ N+ + I G +P+EGG+FKL
Sbjct: 2 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61
Query: 58 LFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLS 115
+ +DYP S PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+
Sbjct: 62 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 121
Query: 116 APNPDDP 122
PN DP
Sbjct: 122 EPNIQDP 128
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
Query: 3 SGNLPRRIVKETQRLLSEPAPGISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLE 57
SG R+ +E + + G A P ++ N+ + I G +P+EGG+FKL
Sbjct: 7 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 66
Query: 58 LFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLS 115
+ +DYP S PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+
Sbjct: 67 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 126
Query: 116 APNPDDP 122
PN DP
Sbjct: 127 EPNIQDP 133
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
Query: 40 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSP 99
+I+ P + Y G L E YP+ PKV L KI+HPNID G +CL+IL++ WSP
Sbjct: 68 VIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSP 127
Query: 100 ALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASDG 153
AL +++++ + L PNP+DPL+ + AK E E E RL S G
Sbjct: 128 ALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEA----VRLTMSGG 177
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 13/144 (9%)
Query: 9 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSA 68
RI K+ L IS S +D + + +++ P + Y+ G F + + YP
Sbjct: 10 RIQKDINELNLPKTCDISFSDPDDLLNF--KLVICPDEGFYKSGKFVFSFKVGQGYPHDP 67
Query: 69 PKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIA 128
PKV+ T +YHPNID G +CL+IL++ W P L I +++ +Q L PNP+DPL+
Sbjct: 68 PKVKCETXVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLN---- 123
Query: 129 KHWKADETEAVETAKEWTRLYASD 152
EA E + RL+ +
Sbjct: 124 -------KEAAEVLQNNRRLFEQN 140
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 32 DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID-KLGRICL 90
D + F V GP +PYE G + L + LP DYP +P + F +I HPN+D + G +CL
Sbjct: 35 DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCL 94
Query: 91 DILKDKWSPALQIRTVL-LSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLY 149
D++ W+P Q+ + + + LL PNP DPL+ A AD +E +
Sbjct: 95 DVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTH 154
Query: 150 AS 151
A+
Sbjct: 155 AT 156
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 83.2 bits (204), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 7/127 (5%)
Query: 3 SGNLPRRIVKETQRLLSEPAPGISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLE 57
SG R+ +E + + G A P ++ N+ + I G +P+EGG+FKL
Sbjct: 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 58 LFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLS 115
+ +DYP S PK +F ++HP + G +CL IL++ W PA+ I+ +LL IQ LL+
Sbjct: 65 MLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 116 APNPDDP 122
PN DP
Sbjct: 125 EPNIQDP 131
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 83.2 bits (204), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 7/127 (5%)
Query: 3 SGNLPRRIVKETQRLLSEPAPGISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLE 57
SG R+ +E + + G A P ++ N+ + I G +P+EGG+FKL
Sbjct: 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 58 LFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLS 115
+ +DYP S PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+
Sbjct: 65 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 116 APNPDDP 122
PN P
Sbjct: 125 EPNIQSP 131
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 82.8 bits (203), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 7/127 (5%)
Query: 3 SGNLPRRIVKETQRLLSEPAPGISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLE 57
SG R+ +E + + G A P ++ N+ + I G +P+EGG+FKL
Sbjct: 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 58 LFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLS 115
+ +DYP S PK +F ++HPN+ G +CL IL++ W PA+ I+ +LL IQ LL+
Sbjct: 65 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 116 APNPDDP 122
PN P
Sbjct: 125 EPNIQAP 131
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 7/136 (5%)
Query: 9 RIVKETQRLLSEPAPGISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLELFLPED 63
R+ +E ++ + G A P + ++ + V I G ++ +EGG++KL + PE+
Sbjct: 14 RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 73
Query: 64 YPMSAPKVRFLTKIYHPNIDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDD 121
YP PK RF ++HPN+ G +CL IL ++ W PA+ I+ +LL IQ LL PN
Sbjct: 74 YPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIAS 133
Query: 122 PLSDNIAKHWKADETE 137
P +K D+ E
Sbjct: 134 PAQTEAYTMFKKDKVE 149
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 7/127 (5%)
Query: 3 SGNLPRRIVKETQRLLSEPAPGISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLE 57
SG R+ +E + + G A P ++ N+ + I G +P+EGG+FKL
Sbjct: 2 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61
Query: 58 LFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLS 115
+ +DYP S PK +F ++HPN+ G + L IL++ W PA+ I+ +LL IQ LL+
Sbjct: 62 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLN 121
Query: 116 APNPDDP 122
PN DP
Sbjct: 122 EPNIQDP 128
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 7/127 (5%)
Query: 3 SGNLPRRIVKETQRLLSEPAPGISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLE 57
SG R+ +E + + G A P ++ N+ + I G +P+EGG+FKL
Sbjct: 2 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61
Query: 58 LFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLS 115
+ +DYP S PK +F ++HPN+ G + L IL++ W PA+ I+ +LL IQ LL+
Sbjct: 62 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQILLGIQELLN 121
Query: 116 APNPDDP 122
PN DP
Sbjct: 122 EPNIQDP 128
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 79.3 bits (194), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 13/144 (9%)
Query: 9 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSA 68
RI K+ L IS S +D + + +++ P + Y+ G F + + YP
Sbjct: 30 RIQKDINELNLPKTCDISFSDPDDLLNF--KLVICPDEGFYKSGKFVFSFKVGQGYPHDP 87
Query: 69 PKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIA 128
PKV+ T +YHPNID G + L+IL++ W P L I +++ +Q L PNP+DPL+
Sbjct: 88 PKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLN---- 143
Query: 129 KHWKADETEAVETAKEWTRLYASD 152
EA E + RL+ +
Sbjct: 144 -------KEAAEVLQNNRRLFEQN 160
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 78/152 (51%), Gaps = 9/152 (5%)
Query: 10 IVKETQRLLSE-PAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSA 68
+VKE L + P P + + F + + P + Y+GG F+ E +P+ Y M
Sbjct: 19 LVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVT-PDEGYYQGGKFQFETEVPDAYNMVP 77
Query: 69 PKVRFLTKIYHPNIDKLGRICLDILKDK------WSPALQIRTVLLSIQALLS-APNPDD 121
PKV+ LTKI+HPNI + G ICL +L++ W+P ++ V+ + +L + N DD
Sbjct: 78 PKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDD 137
Query: 122 PLSDNIAKHWKADETEAVETAKEWTRLYASDG 153
PL+ A+H D+ + ++ + YA G
Sbjct: 138 PLNIEAAEHHLRDKEDFRNKVDDYIKRYARSG 169
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 9/149 (6%)
Query: 10 IVKETQRLLSE-PAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSA 68
+VKE L + P P + + F + + P + Y+GG F+ E +P+ Y M
Sbjct: 19 LVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVT-PDEGYYQGGKFQFETEVPDAYNMVP 77
Query: 69 PKVRFLTKIYHPNIDKLGRICLDILKDK------WSPALQIRTVLLSIQALLS-APNPDD 121
PKV+ LTKI+HPNI + G ICL +L++ W+P ++ V+ + +L + N DD
Sbjct: 78 PKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDD 137
Query: 122 PLSDNIAKHWKADETEAVETAKEWTRLYA 150
PL+ A+H D+ + ++ + YA
Sbjct: 138 PLNIEAAEHHLRDKEDFRNKVDDYIKRYA 166
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 7/137 (5%)
Query: 8 RRIVKETQRLLSEPAPGISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLELFLPE 62
+R+ +E ++ + G A P + +++ + I G + + GGV+ + + P
Sbjct: 7 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 66
Query: 63 DYPMSAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPD 120
+YP PKV+F YHPN+ G ICL IL + W PA+ ++ ++L +Q LL +PNP+
Sbjct: 67 EYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPN 126
Query: 121 DPLSDNIAKHWKADETE 137
P + + + ++ E
Sbjct: 127 SPAQEPAWRSFSRNKAE 143
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 7/137 (5%)
Query: 8 RRIVKETQRLLSEPAPGISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLELFLPE 62
+R+ +E ++ + G A P + +++ + I G + + GGV+ + + P
Sbjct: 9 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 68
Query: 63 DYPMSAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPD 120
+YP PKV+F YHPN+ G ICL IL + W PA+ ++ ++L +Q LL +PNP+
Sbjct: 69 EYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPN 128
Query: 121 DPLSDNIAKHWKADETE 137
P + + + ++ E
Sbjct: 129 SPAQEPAWRSFSRNKAE 145
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Query: 24 GISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID 83
GI+A P ++M + V I G S ++G VF+L + +Y + P V+F+T +HPN+D
Sbjct: 42 GITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVD 101
Query: 84 -KLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADET 136
G+ C+D L + KW+ + ++LL++Q +LS P ++P++ A+ DE+
Sbjct: 102 PHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDES 157
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPED 63
GN RI KE L+ P + +N+R + V +G + Y V+KL++ P+D
Sbjct: 5 GNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDD 64
Query: 64 YPMSAPKVRFLTK-IYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 116
YP+ P V FL K H ++ G ICL +L D ++P+L I ++LSI ++LS+
Sbjct: 65 YPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSS 118
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Query: 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPED 63
GN RI KE L P + N+R + V +G + Y V+K+++ P++
Sbjct: 19 GNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDN 78
Query: 64 YPMSAPKVRFLTK-IYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 116
YP+ P V FL K H ++ G ICL +L D ++P+L I ++LSI ++LS+
Sbjct: 79 YPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSS 132
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 15/147 (10%)
Query: 9 RIVKETQRLL---------SEPAPGI--SASPA-EDNMRYFNVMILGPSQSPYEGGVFKL 56
RIVKE + +L + P GI S +P E ++ + +I GPS +PYE F++
Sbjct: 10 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69
Query: 57 ELFLPEDYPMSAPKVRFL-TKIYHPNIDK-LGRICLDILK-DKWSPALQIRTVLLSIQAL 113
+ +P YPM+ PK+ F+ I H N+ G ICL+ILK ++W+P + + ++ L
Sbjct: 70 LIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRL 129
Query: 114 LSAPNPDDPLSDNIAKHWKADETEAVE 140
L P D PL +I + + A +
Sbjct: 130 LREPVSDSPLDVDIGNIIRCGDMSAYQ 156
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 15/147 (10%)
Query: 9 RIVKETQRLL---------SEPAPGI--SASPA-EDNMRYFNVMILGPSQSPYEGGVFKL 56
RIVKE + +L + P GI S +P E ++ + +I GPS +PYE F++
Sbjct: 10 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69
Query: 57 ELFLPEDYPMSAPKVRFL-TKIYHPNIDK-LGRICLDILK-DKWSPALQIRTVLLSIQAL 113
+ +P YPM+ PK+ F+ I H N+ G ICL+ILK ++W+P + + ++ L
Sbjct: 70 LIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRL 129
Query: 114 LSAPNPDDPLSDNIAKHWKADETEAVE 140
L P D PL +I + + A +
Sbjct: 130 LREPVCDSPLDVDIGNIIRCGDMSAYQ 156
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 15/147 (10%)
Query: 9 RIVKETQRLL---------SEPAPGI--SASPA-EDNMRYFNVMILGPSQSPYEGGVFKL 56
RIVKE + +L + P GI S +P E ++ + +I GPS +PYE F++
Sbjct: 10 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69
Query: 57 ELFLPEDYPMSAPKVRFL-TKIYHPNIDK-LGRICLDILK-DKWSPALQIRTVLLSIQAL 113
+ +P YPM+ PK+ F+ I H N+ G ICL+ILK ++W+P + + ++ L
Sbjct: 70 LIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRL 129
Query: 114 LSAPNPDDPLSDNIAKHWKADETEAVE 140
L P D PL +I + + A +
Sbjct: 130 LREPVCDSPLDVDIGAIIRCGDMSAYQ 156
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 66/115 (57%), Gaps = 4/115 (3%)
Query: 5 NLPRRIVKETQRLLSEPAPGISAS--PAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPE 62
++ +R+ KE L ++P PG++ + ++++ + V + G + YEG F+L
Sbjct: 22 SMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSS 81
Query: 63 DYPMSAPKVRFLTKI--YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLS 115
YP +P+V F + HP++ G ICL IL + WSPAL +++V LSI ++LS
Sbjct: 82 RYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 13/102 (12%)
Query: 31 EDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH-----PNIDKL 85
E+ + V+I GP+ +PY G F+ +++ P+DYP S P V T H PN+
Sbjct: 106 EERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYND 165
Query: 86 GRICLDIL-------KDKWSPAL-QIRTVLLSIQALLSAPNP 119
G++CL IL ++KW+P VL+S+Q+L+ P
Sbjct: 166 GKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEP 207
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMS 67
+R+ ++ R+ +P P I A P N+ ++ ++ GP +PYEGG + +L P ++P
Sbjct: 17 QRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFK 76
Query: 68 APKVRFLTKIYHPN--IDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNP 119
P + +T PN R+CL D D W+PA + T+L + + + P
Sbjct: 77 PPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 129
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 16/124 (12%)
Query: 10 IVKETQRLLSEPAPGISASPAED-----------NMRYFNVMILGPSQSPYEGGVFKLEL 58
IV + RLL E G + +E + ++ I G + +E ++ L +
Sbjct: 19 IVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTI 78
Query: 59 FLPEDYPMSAPKVRFLTKIYHPNIDKLGRIC---LDILKDKWSPALQIRTVLLSI-QALL 114
F ++YP S P V+F TKI +D GR+ L ILK+ W+ I T+L+S+ Q +L
Sbjct: 79 FCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKN-WNRNYTIETILISLRQEML 137
Query: 115 SAPN 118
S+ N
Sbjct: 138 SSAN 141
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 16/124 (12%)
Query: 10 IVKETQRLLSEPAPGISASPAED-----------NMRYFNVMILGPSQSPYEGGVFKLEL 58
IV + RLL E G + +E + ++ I G + +E ++ L +
Sbjct: 23 IVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTI 82
Query: 59 FLPEDYPMSAPKVRFLTKIYHPNIDKLGRIC---LDILKDKWSPALQIRTVLLSI-QALL 114
F ++YP S P V+F TKI +D GR+ L ILK+ W+ I T+L+S+ Q +L
Sbjct: 83 FCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKN-WNRNYTIETILISLRQEML 141
Query: 115 SAPN 118
S+ N
Sbjct: 142 SSAN 145
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 8 RRIVKETQRLLSE----------PAPGISASPAEDNMRYFN--VMILGPSQSPY--EGGV 53
+RI+K+ + LL E +P +A + D +N + + P+ S Y G
Sbjct: 11 KRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNT 70
Query: 54 FKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVL 107
++L + +DYP P VRF+T +Y P + G IC ++ D W+P V+
Sbjct: 71 YQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVI 124
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 34 MRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID-KLGRICLDI 92
M +N ILGP S +E ++ L + +YP S PKV F++KI P ++ G + D
Sbjct: 39 MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDF 98
Query: 93 --LKDKWSPALQIRTVLLSIQALLSAP 117
L+D W A + T+LL ++ ++ P
Sbjct: 99 HTLRD-WKRAYTMETLLLDLRKEMATP 124
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 34 MRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID-KLGRICLDI 92
M +N ILGP S +E ++ L + +YP S PKV F++KI P ++ G + D
Sbjct: 38 MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDF 97
Query: 93 --LKDKWSPALQIRTVLLSIQALLSAP 117
L+D W A + T+LL ++ ++ P
Sbjct: 98 HTLRD-WKRAYTMETLLLDLRKEMATP 123
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 40 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRI----CLDILKD 95
MILGP ++ YE ++ L++ YP + P VRF+TKI ++ + + +L
Sbjct: 46 MILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA- 104
Query: 96 KWSPALQIRTVLLSIQALL 114
KW + I+ VL ++ L+
Sbjct: 105 KWQNSYSIKVVLQELRRLM 123
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 40 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRIC----LDILKD 95
MI+GP ++ YE ++ L++ YP + P VRF+TKI I+ + + +L
Sbjct: 49 MIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA- 107
Query: 96 KWSPALQIRTVLLSIQALL 114
KW + I+ VL ++ L+
Sbjct: 108 KWQNSYSIKVVLQELRRLM 126
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 40 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRIC----LDILKD 95
MI+GP ++ YE ++ L++ YP + P VRF+TKI I+ + + +L
Sbjct: 43 MIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA- 101
Query: 96 KWSPALQIRTVLLSIQALL 114
KW + I+ VL ++ L+
Sbjct: 102 KWQNSYSIKVVLQELRRLM 120
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 40 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRIC----LDILKD 95
MI+GP ++ YE ++ L++ YP + P VRF+TKI I+ + + +L
Sbjct: 54 MIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA- 112
Query: 96 KWSPALQIRTVLLSIQALL 114
KW + I+ VL ++ L+
Sbjct: 113 KWQNSYSIKVVLQELRRLM 131
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 40 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRIC----LDILKD 95
MI+GP ++ YE ++ L++ YP + P VRF+TKI I+ + + +L
Sbjct: 44 MIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA- 102
Query: 96 KWSPALQIRTVLLSIQALL 114
KW + I+ VL ++ L+
Sbjct: 103 KWQNSYSIKVVLQELRRLM 121
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 40 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRI----CLDILKD 95
MI+GP ++ YE ++ L++ YP + P VRF+TKI ++ + + +L
Sbjct: 74 MIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA- 132
Query: 96 KWSPALQIRTVLLSIQALL 114
KW + I+ VL ++ L+
Sbjct: 133 KWQNSYSIKVVLQELRRLM 151
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 40 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRI----CLDILKD 95
MI+GP ++ YE ++ L++ YP + P VRF+TKI ++ + + +L
Sbjct: 64 MIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA- 122
Query: 96 KWSPALQIRTVLLSIQALL 114
KW + I+ VL ++ L+
Sbjct: 123 KWQNSYSIKVVLQELRRLM 141
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii) And
Thionadp
pdb|4AJC|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate, Calcium(Ii)
And Adenine Nucleotide Phosphate
pdb|4AJR|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate,
Magnesium(Ii) And Nadph - The Product Complex
pdb|4AJS|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii),
Adenosine 2',5'-Biphosphate And
Ribosylnicotinamide-5'-Phosphate
Length = 416
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 29 PAE--DNMRYFNVMILGPSQSPYEGGVFKLELFLPED 63
PAE D +R + V I+GP +P GG+ L + L ++
Sbjct: 85 PAETLDLIREYRVAIMGPLTTPVGGGIRSLNVALRQE 121
>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From
Cryptosporidium Parvum, Cgd7_40
Length = 345
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 61 PEDYPMSAPKVRFLTKIYHPNIDKL 85
P+D +VR + K++HPNI +L
Sbjct: 69 PKDVERIKTEVRLMKKLHHPNIARL 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,763,670
Number of Sequences: 62578
Number of extensions: 185460
Number of successful extensions: 537
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 363
Number of HSP's gapped (non-prelim): 119
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)