Query 031739
Match_columns 153
No_of_seqs 151 out of 1105
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 04:41:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 1.9E-57 4.2E-62 318.9 15.3 146 6-151 2-147 (148)
2 COG5078 Ubiquitin-protein liga 100.0 1E-56 2.2E-61 321.5 17.6 151 1-151 1-152 (153)
3 PTZ00390 ubiquitin-conjugating 100.0 1.1E-52 2.4E-57 303.2 19.4 147 6-152 3-149 (152)
4 PLN00172 ubiquitin conjugating 100.0 5.2E-52 1.1E-56 298.4 19.2 145 7-151 3-147 (147)
5 KOG0419 Ubiquitin-protein liga 100.0 1.4E-52 3E-57 287.2 14.9 147 2-148 1-147 (152)
6 KOG0425 Ubiquitin-protein liga 100.0 1.7E-48 3.7E-53 274.2 16.3 149 1-149 1-163 (171)
7 KOG0418 Ubiquitin-protein liga 100.0 3.2E-47 7E-52 275.1 15.0 147 6-152 4-154 (200)
8 KOG0424 Ubiquitin-protein liga 100.0 4.4E-46 9.6E-51 258.6 15.5 151 2-152 1-158 (158)
9 PF00179 UQ_con: Ubiquitin-con 100.0 8.4E-46 1.8E-50 264.3 14.9 138 9-146 1-140 (140)
10 KOG0426 Ubiquitin-protein liga 100.0 1.5E-45 3.3E-50 252.7 14.3 148 2-149 1-162 (165)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 3.4E-45 7.4E-50 261.5 16.7 139 8-146 2-141 (141)
12 smart00212 UBCc Ubiquitin-conj 100.0 3E-44 6.5E-49 257.7 18.1 143 8-150 1-145 (145)
13 KOG0421 Ubiquitin-protein liga 100.0 1.1E-44 2.3E-49 251.8 12.3 145 3-148 27-171 (175)
14 KOG0422 Ubiquitin-protein liga 100.0 4.6E-41 1E-45 232.4 14.1 146 5-151 2-149 (153)
15 KOG0416 Ubiquitin-protein liga 100.0 2E-39 4.4E-44 231.1 12.0 145 5-152 3-149 (189)
16 KOG0423 Ubiquitin-protein liga 100.0 3.6E-39 7.7E-44 230.5 8.0 149 5-153 10-158 (223)
17 KOG0420 Ubiquitin-protein liga 100.0 2.2E-37 4.8E-42 221.1 11.7 145 4-151 27-175 (184)
18 KOG0427 Ubiquitin conjugating 100.0 1.9E-32 4.2E-37 187.9 12.2 118 5-123 15-134 (161)
19 KOG0894 Ubiquitin-protein liga 100.0 1.7E-31 3.7E-36 197.1 15.1 116 1-118 1-119 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 1.4E-25 2.9E-30 166.4 14.5 141 8-149 22-168 (258)
21 KOG0428 Non-canonical ubiquiti 99.9 3.2E-23 6.9E-28 156.1 9.7 112 4-118 10-125 (314)
22 KOG0895 Ubiquitin-conjugating 99.7 9.9E-18 2.2E-22 146.9 10.2 111 6-116 852-971 (1101)
23 KOG0895 Ubiquitin-conjugating 99.7 5.4E-16 1.2E-20 136.1 10.7 114 4-117 281-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.6 3.3E-15 7.2E-20 103.4 8.5 115 1-115 1-122 (138)
25 PF14461 Prok-E2_B: Prokaryoti 98.8 3.1E-08 6.6E-13 70.0 7.7 67 50-116 34-106 (133)
26 KOG0897 Predicted ubiquitin-co 98.8 2.6E-08 5.6E-13 67.4 6.2 97 54-153 13-113 (122)
27 PF05743 UEV: UEV domain; Int 98.2 9.2E-06 2E-10 56.5 6.9 78 33-115 31-116 (121)
28 PF08694 UFC1: Ubiquitin-fold 97.9 5.5E-06 1.2E-10 58.4 2.4 96 7-107 26-135 (161)
29 KOG2391 Vacuolar sorting prote 97.5 0.0005 1.1E-08 55.1 7.7 81 33-118 51-139 (365)
30 smart00591 RWD domain in RING 96.6 0.041 8.8E-07 36.5 9.6 27 50-76 39-65 (107)
31 PF05773 RWD: RWD domain; Int 96.6 0.0098 2.1E-07 39.8 6.3 68 8-76 4-73 (113)
32 KOG3357 Uncharacterized conser 96.6 0.0039 8.4E-08 43.5 4.1 94 7-106 29-137 (167)
33 PF14462 Prok-E2_E: Prokaryoti 96.4 0.056 1.2E-06 37.6 9.0 90 23-115 12-120 (122)
34 PF14457 Prok-E2_A: Prokaryoti 95.3 0.032 7E-07 40.7 4.5 61 56-116 57-126 (162)
35 PF09765 WD-3: WD-repeat regio 92.2 0.33 7.1E-06 38.8 5.1 86 6-114 100-186 (291)
36 KOG0309 Conserved WD40 repeat- 86.8 3.5 7.6E-05 37.1 7.5 69 6-76 421-491 (1081)
37 KOG4018 Uncharacterized conser 84.4 4.3 9.4E-05 30.9 6.1 62 10-74 7-71 (215)
38 PF14460 Prok-E2_D: Prokaryoti 82.1 2.3 4.9E-05 31.3 3.9 41 74-117 89-133 (175)
39 PF06113 BRE: Brain and reprod 64.3 50 0.0011 27.0 7.6 42 34-81 53-95 (333)
40 TIGR03737 PRTRC_B PRTRC system 62.7 13 0.00027 28.7 3.9 39 75-117 131-173 (228)
41 cd07981 TAF12 TATA Binding Pro 62.4 26 0.00057 21.7 4.7 44 109-152 6-49 (72)
42 PF06113 BRE: Brain and reprod 57.8 25 0.00053 28.7 4.9 28 51-79 305-332 (333)
43 cd00421 intradiol_dioxygenase 55.7 20 0.00043 25.4 3.7 25 50-74 64-89 (146)
44 smart00340 HALZ homeobox assoc 55.7 11 0.00023 21.2 1.8 14 7-20 21-34 (44)
45 KOG0177 20S proteasome, regula 53.4 22 0.00048 26.7 3.6 30 85-114 135-164 (200)
46 cd03457 intradiol_dioxygenase_ 52.3 24 0.00051 26.4 3.7 25 50-74 85-109 (188)
47 smart00803 TAF TATA box bindin 45.5 35 0.00075 20.8 3.1 41 111-152 9-49 (65)
48 cd03459 3,4-PCD Protocatechuat 43.0 42 0.0009 24.3 3.7 24 51-74 72-100 (158)
49 PF03366 YEATS: YEATS family; 41.4 95 0.0021 19.9 5.6 43 35-79 2-44 (84)
50 KOG0662 Cyclin-dependent kinas 37.0 35 0.00077 25.9 2.6 55 66-120 167-225 (292)
51 PRK11700 hypothetical protein; 34.4 1.3E+02 0.0029 22.4 5.3 71 33-109 87-184 (187)
52 KOG3285 Spindle assembly check 34.4 79 0.0017 23.6 4.0 55 6-71 120-174 (203)
53 PF12018 DUF3508: Domain of un 34.0 58 0.0013 25.7 3.6 30 121-150 237-266 (281)
54 PF03847 TFIID_20kDa: Transcri 33.2 1.2E+02 0.0026 18.7 4.4 44 109-152 4-47 (68)
55 COG3140 Uncharacterized protei 33.0 61 0.0013 19.3 2.6 26 1-26 28-53 (60)
56 KOG4445 Uncharacterized conser 31.9 63 0.0014 26.2 3.4 25 52-76 45-69 (368)
57 KOG1047 Bifunctional leukotrie 30.4 52 0.0011 28.9 2.9 29 47-76 248-279 (613)
58 TIGR02423 protocat_alph protoc 29.6 83 0.0018 23.6 3.6 25 50-74 95-124 (193)
59 PF14135 DUF4302: Domain of un 29.1 2.3E+02 0.005 21.6 6.1 69 4-84 8-101 (235)
60 PF00718 Polyoma_coat: Polyoma 28.9 1.4E+02 0.0031 23.9 4.8 39 49-90 194-234 (297)
61 cd03463 3,4-PCD_alpha Protocat 27.5 97 0.0021 23.0 3.6 24 51-74 92-120 (185)
62 KOG0700 Protein phosphatase 2C 26.6 1.8E+02 0.0038 24.4 5.3 73 10-87 250-331 (390)
63 cd05845 Ig2_L1-CAM_like Second 26.4 1.7E+02 0.0037 19.1 4.3 26 49-76 16-41 (95)
64 PF10346 Con-6: Conidiation pr 23.5 1.3E+02 0.0027 16.3 2.6 27 104-130 4-30 (36)
65 PF12065 DUF3545: Protein of u 23.3 62 0.0013 19.5 1.5 13 7-19 36-48 (59)
66 PF04881 Adeno_GP19K: Adenovir 23.3 84 0.0018 22.1 2.4 21 30-50 43-63 (139)
67 cd01145 TroA_c Periplasmic bin 22.9 1.4E+02 0.0031 22.0 3.9 47 97-149 111-157 (203)
68 PF14455 Metal_CEHH: Predicted 21.7 3.3E+02 0.0071 19.9 7.2 68 5-76 5-76 (177)
69 PF09280 XPC-binding: XPC-bind 21.0 1.4E+02 0.003 17.8 2.8 21 123-143 34-54 (59)
70 cd01020 TroA_b Metal binding p 20.7 2E+02 0.0043 22.2 4.4 47 97-149 98-144 (264)
71 PF13950 Epimerase_Csub: UDP-g 20.6 97 0.0021 18.5 2.1 18 96-113 37-54 (62)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-57 Score=318.90 Aligned_cols=146 Identities=63% Similarity=1.058 Sum_probs=143.9
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEeCCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccccccceeCC
Q 031739 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 85 (153)
Q Consensus 6 ~~kRl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~ 85 (153)
+.+||++|++++++++++||.+.+.++|+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||+++
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~ 81 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSN 81 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeccCCCCcCCcCCHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHhc
Q 031739 86 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 151 (153)
Q Consensus 86 G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 151 (153)
|.||+|+|.++|+|++++.+||++|+++|.+||+++|++.++|.+|++|+.+|.++||+||++||+
T Consensus 82 G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 82 GRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred ccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999997
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-56 Score=321.53 Aligned_cols=151 Identities=50% Similarity=0.962 Sum_probs=147.5
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCeEEEeCCC-CCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccccc
Q 031739 1 MASGNLPRRIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (153)
Q Consensus 1 m~~~~~~kRl~~E~~~l~~~~~~g~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H 79 (153)
|++..+.+||++|++.+++++++++++.|.++ |+++|++.|.||.+||||||+|++.|.||++||++||+|+|.++|||
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 56667999999999999999999999999888 99999999999999999999999999999999999999999999999
Q ss_pred cceeCCCceeeccCCCCcCCcCCHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHhc
Q 031739 80 PNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 151 (153)
Q Consensus 80 pnv~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 151 (153)
||||.+|+||+++|.+.|+|++++++||.+|+++|.+||.++|+|.|||++|++|+++|.++||+|+++||.
T Consensus 81 PNV~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 81 PNVDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCcCCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999985
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.1e-52 Score=303.22 Aligned_cols=147 Identities=66% Similarity=1.153 Sum_probs=144.3
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEeCCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccccccceeCC
Q 031739 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 85 (153)
Q Consensus 6 ~~kRl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~ 85 (153)
+.|||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeccCCCCcCCcCCHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHhcC
Q 031739 86 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 152 (153)
Q Consensus 86 G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 152 (153)
|.||+++|.+.|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|+++||+.
T Consensus 83 G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 83 GRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred CeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999973
No 4
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=5.2e-52 Score=298.43 Aligned_cols=145 Identities=52% Similarity=0.971 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEeCCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccccccceeCCC
Q 031739 7 PRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLG 86 (153)
Q Consensus 7 ~kRl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G 86 (153)
.+||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++|||||+.+|
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G 82 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNG 82 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccCCCCcCCcCCHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHhc
Q 031739 87 RICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 151 (153)
Q Consensus 87 ~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 151 (153)
.||+++|.+.|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|+++||.
T Consensus 83 ~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 83 SICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred EEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999985
No 5
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-52 Score=287.17 Aligned_cols=147 Identities=41% Similarity=0.803 Sum_probs=143.5
Q ss_pred CCCchHHHHHHHHHHHhhCCCCCeEEEeCCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccccccc
Q 031739 2 ASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPN 81 (153)
Q Consensus 2 ~~~~~~kRl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpn 81 (153)
|+..+.|||++|+++++++++.|++..|.++|++.|.++|+||.+|||+||+|++.|.|+++||.+||.|+|.+.+||||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCceeeccCCCCcCCcCCHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHH
Q 031739 82 IDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRL 148 (153)
Q Consensus 82 v~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~ 148 (153)
||.+|.+|+|+|...|+|.|++.+||.+||+||.+||+.+|+|.|||++|.+|+.+|.+++++.+.+
T Consensus 81 vya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veq 147 (152)
T KOG0419|consen 81 VYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQ 147 (152)
T ss_pred cCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998765
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-48 Score=274.22 Aligned_cols=149 Identities=34% Similarity=0.716 Sum_probs=142.5
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCeEEEeCCC-CCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccccc
Q 031739 1 MASGNLPRRIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (153)
Q Consensus 1 m~~~~~~kRl~~E~~~l~~~~~~g~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H 79 (153)
|++.++..-|+++|++|++++.+|+.+...++ |+++|.|.|+||++|+|+||.|+..+.||.+||.+||+++|+|++||
T Consensus 1 m~~~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwH 80 (171)
T KOG0425|consen 1 MTSSQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWH 80 (171)
T ss_pred CccchhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcC
Confidence 67788889999999999999999999988655 99999999999999999999999999999999999999999999999
Q ss_pred cceeCCCceeeccCC-------------CCcCCcCCHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHH
Q 031739 80 PNIDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWT 146 (153)
Q Consensus 80 pnv~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 146 (153)
||||++|.+|+++|- +.|.|..++++||++|.+||.+||.++|+|.|||..|++++++|.+++++++
T Consensus 81 PNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~v 160 (171)
T KOG0425|consen 81 PNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCV 160 (171)
T ss_pred CCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHH
Confidence 999999999999983 4799999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 031739 147 RLY 149 (153)
Q Consensus 147 ~~~ 149 (153)
++-
T Consensus 161 r~s 163 (171)
T KOG0425|consen 161 RRS 163 (171)
T ss_pred HHH
Confidence 864
No 7
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-47 Score=275.08 Aligned_cols=147 Identities=44% Similarity=0.845 Sum_probs=143.5
Q ss_pred hHHHHHHHHHHHhhCC---CCCeEEEeCCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccccccce
Q 031739 6 LPRRIVKETQRLLSEP---APGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (153)
Q Consensus 6 ~~kRl~~E~~~l~~~~---~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv 82 (153)
+.+||++|++++.+++ ..|+.+...++|+.+..+.|.||++||||||+|.++|++|++|||+||+|+|.|+||||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnV 83 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNV 83 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCC
Confidence 7899999999999988 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred eC-CCceeeccCCCCcCCcCCHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHhcC
Q 031739 83 DK-LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 152 (153)
Q Consensus 83 ~~-~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 152 (153)
++ +|.||+|++.+.|++++|++++|++|+++|..|++++|.+.++|++|.+|++.|.++||.|+..||+.
T Consensus 84 Ss~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 84 SSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred CcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 96 89999999999999999999999999999999999999999999999999999999999999999974
No 8
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-46 Score=258.59 Aligned_cols=151 Identities=32% Similarity=0.626 Sum_probs=144.2
Q ss_pred CCCchHHHHHHHHHHHhhCCCCCeEEEeCC-----CCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc
Q 031739 2 ASGNLPRRIVKETQRLLSEPAPGISASPAE-----DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (153)
Q Consensus 2 ~~~~~~kRl~~E~~~l~~~~~~g~~~~~~~-----~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~ 76 (153)
+|..++.||++|-+.+.++.+-|+++.|.. .|++.|++.|.|++||+||||.|.+++.||++||.+||+++|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 466778999999999999999999998853 478999999999999999999999999999999999999999999
Q ss_pred ccccceeCCCceeeccCCCC--cCCcCCHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHhcC
Q 031739 77 IYHPNIDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 152 (153)
Q Consensus 77 i~Hpnv~~~G~icl~~l~~~--W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 152 (153)
+||||||+.|.|||++|.+. |+|+.+|.+||.+|+.||.+||+.+|+|.||...|.+|+.+|.++||.++++||..
T Consensus 81 l~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~~ 158 (158)
T KOG0424|consen 81 LFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAKA 158 (158)
T ss_pred CcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999864 99999999999999999999999999999999999999999999999999999963
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=8.4e-46 Score=264.32 Aligned_cols=138 Identities=54% Similarity=1.023 Sum_probs=128.9
Q ss_pred HHHHHHHHHhhCCCCCeEEEeCCC-CCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccccccceeCCCc
Q 031739 9 RIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGR 87 (153)
Q Consensus 9 Rl~~E~~~l~~~~~~g~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~ 87 (153)
||++|+++++++++.|+.+.+.++ |+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+++||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999886 9999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCC-CcCCcCCHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHH
Q 031739 88 ICLDILKD-KWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWT 146 (153)
Q Consensus 88 icl~~l~~-~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 146 (153)
+|+++|.. .|+|++++.+||.+|+++|.+|+.++|+|.+|+++|++|+++|.++||+|.
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred chhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 99999985 599999999999999999999999999999999999999999999999984
No 10
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-45 Score=252.74 Aligned_cols=148 Identities=37% Similarity=0.728 Sum_probs=141.5
Q ss_pred CCCchHHHHHHHHHHHhhCCCCCeEEEeC-CCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccc
Q 031739 2 ASGNLPRRIVKETQRLLSEPAPGISASPA-EDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHP 80 (153)
Q Consensus 2 ~~~~~~kRl~~E~~~l~~~~~~g~~~~~~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hp 80 (153)
+++.++|||++||++|..++++||.+.|. +||+++|.+.|.||++|+|+||+|..++.||.+||.+||+++|...+|||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 35678999999999999999999999985 67899999999999999999999999999999999999999999999999
Q ss_pred ceeCCCceeeccCC-------------CCcCCcCCHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHH
Q 031739 81 NIDKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTR 147 (153)
Q Consensus 81 nv~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~ 147 (153)
||+.+|++|+++|- +.|+|.++++.||.++.+||.+||-++.+|.+|+.++++|+++|.+.|++.++
T Consensus 81 Niy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvr 160 (165)
T KOG0426|consen 81 NIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVR 160 (165)
T ss_pred cccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999982 57999999999999999999999999999999999999999999999999998
Q ss_pred HH
Q 031739 148 LY 149 (153)
Q Consensus 148 ~~ 149 (153)
|.
T Consensus 161 Kt 162 (165)
T KOG0426|consen 161 KT 162 (165)
T ss_pred Hh
Confidence 75
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=3.4e-45 Score=261.53 Aligned_cols=139 Identities=54% Similarity=0.999 Sum_probs=136.1
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccccccceeCCCc
Q 031739 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGR 87 (153)
Q Consensus 8 kRl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~ 87 (153)
|||++|+++++++++.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.++++||||+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCC-cCCcCCHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHH
Q 031739 88 ICLDILKDK-WSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWT 146 (153)
Q Consensus 88 icl~~l~~~-W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 146 (153)
+|++++... |+|++++++||.+|+++|.+|+.++|+|.+||++|++|+++|.++|++|+
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 999999877 99999999999999999999999999999999999999999999999985
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=3e-44 Score=257.74 Aligned_cols=143 Identities=55% Similarity=1.019 Sum_probs=139.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCC-CCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccccccceeCCC
Q 031739 8 RRIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLG 86 (153)
Q Consensus 8 kRl~~E~~~l~~~~~~g~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G 86 (153)
+||++|+++++++++.|+.+.+.++ |+++|+++|.||++|||+||+|+++|.||++||.+||+|+|.++++||||+++|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 6999999999999999999988775 999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccCC-CCcCCcCCHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHh
Q 031739 87 RICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYA 150 (153)
Q Consensus 87 ~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a 150 (153)
.+|++++. +.|+|++++++||.+|+++|.+|+.++++|.+||++|++|+++|.++|++|+++|+
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999998 89999999999999999999999999999999999999999999999999999985
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-44 Score=251.77 Aligned_cols=145 Identities=42% Similarity=0.737 Sum_probs=140.2
Q ss_pred CCchHHHHHHHHHHHhhCCCCCeEEEeCCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccccccce
Q 031739 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (153)
Q Consensus 3 ~~~~~kRl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv 82 (153)
++.+.|||++|+..|.....+||++.|.+||++.|.++|.||.+|+|+|-.|++.+.||.+||++||+|+|+|+.|||||
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNV 106 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNV 106 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCc
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCceeeccCCCCcCCcCCHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHH
Q 031739 83 DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRL 148 (153)
Q Consensus 83 ~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~ 148 (153)
|..|.||+|+|.+.|+..|++++||++||++|-+||.++|+|..||+++. |.++|.+.+.+.-++
T Consensus 107 D~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 107 DLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE 171 (175)
T ss_pred cccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999988 999999998877654
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-41 Score=232.43 Aligned_cols=146 Identities=35% Similarity=0.722 Sum_probs=138.3
Q ss_pred chHHHHHHHHHHHhhCCCCCeE-EEeCCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccccee
Q 031739 5 NLPRRIVKETQRLLSEPAPGIS-ASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID 83 (153)
Q Consensus 5 ~~~kRl~~E~~~l~~~~~~g~~-~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~ 83 (153)
.+.+||++|+.+|++++...+. +..+++|++.|++.|. |.+-||..|.|+++|.||.+|||+||+|.|.|.|||||||
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 3679999999999999877555 5567889999999999 9999999999999999999999999999999999999999
Q ss_pred CCCceeeccCC-CCcCCcCCHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHhc
Q 031739 84 KLGRICLDILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 151 (153)
Q Consensus 84 ~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 151 (153)
..|.+|+.++. ++|.|+..+++||++|.+++.+|+++.|++.|+|..|.+|+..|.++|.+||++|+.
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 99999999885 899999999999999999999999999999999999999999999999999999985
No 15
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-39 Score=231.13 Aligned_cols=145 Identities=38% Similarity=0.742 Sum_probs=135.9
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEEeCCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccccccceeC
Q 031739 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK 84 (153)
Q Consensus 5 ~~~kRl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~ 84 (153)
...|||..|...|... +..|...++++.+++|.+.||.+|||+||++++++.+|++||++.|.|.|+++||||||+.
T Consensus 3 ~~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe 79 (189)
T KOG0416|consen 3 SGKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDE 79 (189)
T ss_pred CcccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchh
Confidence 3568999999888874 5578888999999999999999999999999999999999999999999999999999995
Q ss_pred -CCceeeccCCCCcCCcCCHHHHHHHH-HHHHcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHhcC
Q 031739 85 -LGRICLDILKDKWSPALQIRTVLLSI-QALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 152 (153)
Q Consensus 85 -~G~icl~~l~~~W~p~~~i~~il~~i-~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 152 (153)
+|.||++.+.+.|+|.+.+..|+..+ -.||..||+.+|+|.|||.+|.+++++|.++++++.++||++
T Consensus 80 ~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~ 149 (189)
T KOG0416|consen 80 ASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATP 149 (189)
T ss_pred ccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcCh
Confidence 99999999999999999999999755 778999999999999999999999999999999999999986
No 16
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-39 Score=230.53 Aligned_cols=149 Identities=37% Similarity=0.674 Sum_probs=146.0
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEEeCCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccccccceeC
Q 031739 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK 84 (153)
Q Consensus 5 ~~~kRl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~ 84 (153)
.+.|.+.+|++.+...|+.||.|.+.++|+....+.|.||.||||++|.|++.+.+..+||.+||+-.|.|+||||||..
T Consensus 10 ~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaa 89 (223)
T KOG0423|consen 10 NVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAA 89 (223)
T ss_pred HHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCccc
Confidence 57799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeccCCCCcCCcCCHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHhcCC
Q 031739 85 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASDG 153 (153)
Q Consensus 85 ~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~~ 153 (153)
+|.||++.|..+|.|.++|+.||..|+++|..|++++.+|++|..+..++.++|.+.||-++.-||++|
T Consensus 90 NGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p~ 158 (223)
T KOG0423|consen 90 NGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKPK 158 (223)
T ss_pred CceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999875
No 17
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-37 Score=221.07 Aligned_cols=145 Identities=32% Similarity=0.614 Sum_probs=127.4
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEEEe--CCCCCc--eEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccccc
Q 031739 4 GNLPRRIVKETQRLLSEPAPGISASP--AEDNMR--YFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (153)
Q Consensus 4 ~~~~kRl~~E~~~l~~~~~~g~~~~~--~~~~~~--~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H 79 (153)
+.++-||++|..++. .++++++.. ..+++. +++++|. |..+.|.||.|.|.+.+|+.||+.||+|+++|+|||
T Consensus 27 s~a~lrl~~di~eln--Lp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~H 103 (184)
T KOG0420|consen 27 SAALLRLKKDILELN--LPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYH 103 (184)
T ss_pred cHHHHHHHhhhhhcc--CCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeecccc
Confidence 345667777776654 455665321 234443 5999999 999999999999999999999999999999999999
Q ss_pred cceeCCCceeeccCCCCcCCcCCHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHhc
Q 031739 80 PNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYAS 151 (153)
Q Consensus 80 pnv~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 151 (153)
|||+.+|.||+++|+++|+|..++.+|+.+|+.+|.+|+++||+|.|||+++++|++.|...||+....++-
T Consensus 104 PNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v 175 (184)
T KOG0420|consen 104 PNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCV 175 (184)
T ss_pred CCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999998877653
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-32 Score=187.87 Aligned_cols=118 Identities=34% Similarity=0.656 Sum_probs=109.8
Q ss_pred chHHHHHHHHHHHhhCCCCCeEEEeCCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccc-ccccee
Q 031739 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI-YHPNID 83 (153)
Q Consensus 5 ~~~kRl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv~ 83 (153)
.+.+||+||+.+++.+||.|+... ..+|+.+|.+.+.|.+||.|+|.+|.++++||+.||++.|.|.|+.++ .||+||
T Consensus 15 ~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiY 93 (161)
T KOG0427|consen 15 IATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIY 93 (161)
T ss_pred HHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCcee
Confidence 577999999999999999999887 788999999999999999999999999999999999999999999887 799999
Q ss_pred CCCceeeccCCCCcCCcCCHHHHHHHHHHHHcCC-CCCCcc
Q 031739 84 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAP-NPDDPL 123 (153)
Q Consensus 84 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p-~~~~~~ 123 (153)
++|.||+++|.+.|+|++++.+|.++|.+||++- .-..|.
T Consensus 94 SNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~ 134 (161)
T KOG0427|consen 94 SNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPT 134 (161)
T ss_pred cCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCC
Confidence 9999999999999999999999999999999854 333444
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.7e-31 Score=197.11 Aligned_cols=116 Identities=29% Similarity=0.638 Sum_probs=107.2
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCeEEEeCCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccc
Q 031739 1 MASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHP 80 (153)
Q Consensus 1 m~~~~~~kRl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hp 80 (153)
|++..+.|||+|||+.|+++|.++|.+.|.++|+++||.+|.||++|||+||.|+.+|.||++||++||.|++.|+ +.
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP--NG 78 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP--NG 78 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC--CC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999987 34
Q ss_pred ceeCCCceeeccC---CCCcCCcCCHHHHHHHHHHHHcCCC
Q 031739 81 NIDKLGRICLDIL---KDKWSPALQIRTVLLSIQALLSAPN 118 (153)
Q Consensus 81 nv~~~G~icl~~l---~~~W~p~~~i~~il~~i~~ll~~p~ 118 (153)
.+-.+-++||++. .+.|+|++++.+||.+|.++|.+-.
T Consensus 79 RFktntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~ 119 (244)
T KOG0894|consen 79 RFKTNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDS 119 (244)
T ss_pred ceecCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCC
Confidence 4445679999876 4899999999999999999997543
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-25 Score=166.39 Aligned_cols=141 Identities=23% Similarity=0.383 Sum_probs=128.8
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCC--CCCeEEEeccccccceeC-
Q 031739 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPM--SAPKVRFLTKIYHPNIDK- 84 (153)
Q Consensus 8 kRl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~--~pP~v~f~t~i~Hpnv~~- 84 (153)
--|+.|+..+.+.+.+||+|.|+-.|-+.|-++|+ -..+.|.||+|+|+|.+|++||. +-|+|.|.++++||+|.+
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViF-vr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ 100 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIF-VRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK 100 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEE-EecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence 46788899999999999999999999999999999 57788999999999999999994 699999999999999996
Q ss_pred CCceeeccCCCCcCCcC-CHHHHHHHHHHHHcCCCCCCc--ccHHHHHHHHhCHHHHHHHHHHHHHHH
Q 031739 85 LGRICLDILKDKWSPAL-QIRTVLLSIQALLSAPNPDDP--LSDNIAKHWKADETEAVETAKEWTRLY 149 (153)
Q Consensus 85 ~G~icl~~l~~~W~p~~-~i~~il~~i~~ll~~p~~~~~--~n~~aa~~~~~~~~~f~~~~~~~~~~~ 149 (153)
++.+|+.-....|...- +|+++|..++..|.+|+.+.+ .|+||+.+|++++++|.++|+++++..
T Consensus 101 skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~s 168 (258)
T KOG0429|consen 101 SKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKAS 168 (258)
T ss_pred ccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 89999987777797665 699999999999999987766 599999999999999999999998753
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.2e-23 Score=156.11 Aligned_cols=112 Identities=33% Similarity=0.687 Sum_probs=99.7
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEEEeCCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecccccccee
Q 031739 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID 83 (153)
Q Consensus 4 ~~~~kRl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~ 83 (153)
+.+.|||++|.++++ +|...+.+.|.+||+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+-.+|+ +..+-
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGRFE 86 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGRFE 86 (314)
T ss_pred CHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCcee
Confidence 467899999999998 788888899999999999999999999999999999999999999999999998886 33444
Q ss_pred CCCceeeccC---CCCcCCcCCHHHHHHHHHHHHc-CCC
Q 031739 84 KLGRICLDIL---KDKWSPALQIRTVLLSIQALLS-APN 118 (153)
Q Consensus 84 ~~G~icl~~l---~~~W~p~~~i~~il~~i~~ll~-~p~ 118 (153)
-+..||+++. .+.|.|+++|++.|.+|..+|- .|+
T Consensus 87 ~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~ 125 (314)
T KOG0428|consen 87 VNKKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPE 125 (314)
T ss_pred eCceEEEEecCCCccccCcchhHHHHHHHHHccccCCCC
Confidence 5668999887 4899999999999999999884 443
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=9.9e-18 Score=146.87 Aligned_cols=111 Identities=32% Similarity=0.631 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEeCCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc--cccccee
Q 031739 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK--IYHPNID 83 (153)
Q Consensus 6 ~~kRl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~--i~Hpnv~ 83 (153)
..+..+.|++-|..+.+.||+|...++.+....+.|.||.||||.+|.|.|++.||++||.+||.|...+. .++||.|
T Consensus 852 ~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly 931 (1101)
T KOG0895|consen 852 WAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLY 931 (1101)
T ss_pred HHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccc
Confidence 34556777888888999999999999988888999999999999999999999999999999999999864 5899999
Q ss_pred CCCceeeccCC-------CCcCCcCCHHHHHHHHHHHHcC
Q 031739 84 KLGRICLDILK-------DKWSPALQIRTVLLSIQALLSA 116 (153)
Q Consensus 84 ~~G~icl~~l~-------~~W~p~~~i~~il~~i~~ll~~ 116 (153)
..|++|+++|. +.|+|+-+|.++|.+||.|...
T Consensus 932 ~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 932 EDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred cccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence 99999999995 6799988999999999998654
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5.4e-16 Score=136.12 Aligned_cols=114 Identities=33% Similarity=0.699 Sum_probs=105.8
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEEEeCCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc---cccc
Q 031739 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK---IYHP 80 (153)
Q Consensus 4 ~~~~kRl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~---i~Hp 80 (153)
....+|+++|++-+.++.++|+.+.+.+..+....+.|.||.||||++|+|.|+|.||..||..||.+.+.+. .+.|
T Consensus 281 ~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nP 360 (1101)
T KOG0895|consen 281 KNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNP 360 (1101)
T ss_pred hhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecC
Confidence 3567999999999999999999999999999999999999999999999999999999999999999999976 5899
Q ss_pred ceeCCCceeeccCC-------CCcCCc-CCHHHHHHHHHHHHcCC
Q 031739 81 NIDKLGRICLDILK-------DKWSPA-LQIRTVLLSIQALLSAP 117 (153)
Q Consensus 81 nv~~~G~icl~~l~-------~~W~p~-~~i~~il~~i~~ll~~p 117 (153)
|.|.+|+||+++|. +.|+|. .++.++|.+|+.++..-
T Consensus 361 NlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 361 NLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred CcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 99999999999883 679998 78999999999997654
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.3e-15 Score=103.39 Aligned_cols=115 Identities=22% Similarity=0.342 Sum_probs=91.6
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCeEEEeC--CCC--CceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc
Q 031739 1 MASGNLPRRIVKETQRLLSEPAPGISASPA--EDN--MRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (153)
Q Consensus 1 m~~~~~~kRl~~E~~~l~~~~~~g~~~~~~--~~~--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~ 76 (153)
|+-....-||.+|+.+-++...+|....-. .+| +..|...|.||+.|+||+-+|.++|.+.++||..||+|+|.++
T Consensus 1 ~~~vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tk 80 (138)
T KOG0896|consen 1 MVKVPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTK 80 (138)
T ss_pred CCccccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEE
Confidence 344456678999998876665555443332 233 4589999999999999999999999999999999999999999
Q ss_pred ccccceeC-CCceeeccC--CCCcCCcCCHHHHHHHHHHHHc
Q 031739 77 IYHPNIDK-LGRICLDIL--KDKWSPALQIRTVLLSIQALLS 115 (153)
Q Consensus 77 i~Hpnv~~-~G~icl~~l--~~~W~p~~~i~~il~~i~~ll~ 115 (153)
+--..|++ +|.+.-..+ -.+|.-.++++.+|..++.++.
T Consensus 81 inm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~ 122 (138)
T KOG0896|consen 81 INMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMM 122 (138)
T ss_pred eeecccccCCCccCccccchhhcccccchhhHHHHhhhHHHH
Confidence 98888885 677664333 3699999999999999986654
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.79 E-value=3.1e-08 Score=70.05 Aligned_cols=67 Identities=31% Similarity=0.658 Sum_probs=60.8
Q ss_pred CCcEEEEEEEcCCCCCCCCCeEEEeccc---cccceeCCCceee---ccCCCCcCCcCCHHHHHHHHHHHHcC
Q 031739 50 EGGVFKLELFLPEDYPMSAPKVRFLTKI---YHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSA 116 (153)
Q Consensus 50 ~gg~f~~~i~fp~~yP~~pP~v~f~t~i---~Hpnv~~~G~icl---~~l~~~W~p~~~i~~il~~i~~ll~~ 116 (153)
.|+.+.++|.||++||..||.|....+. +-|||+.+|.+|+ +...+.|.|...+.++|.+++.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998654 6799999999999 77778999999999999999999873
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.6e-08 Score=67.44 Aligned_cols=97 Identities=20% Similarity=0.389 Sum_probs=66.5
Q ss_pred EEEEEEcCCCCCCCCCeEEEecccccc-ceeCCCceeeccCC-CCcCCcCCHHHHHHHHHHHHcCC--CCCCcccHHHHH
Q 031739 54 FKLELFLPEDYPMSAPKVRFLTKIYHP-NIDKLGRICLDILK-DKWSPALQIRTVLLSIQALLSAP--NPDDPLSDNIAK 129 (153)
Q Consensus 54 f~~~i~fp~~yP~~pP~v~f~t~i~Hp-nv~~~G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~p--~~~~~~n~~aa~ 129 (153)
.-+.+.|++|||+.||.+|...++-.- -|-.+|.||+.++. ++|+.+++++.++.+|-.++..- ....+++.+..
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk- 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK- 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence 446688999999999999987665332 34457999999984 78999999999999999998765 34455554433
Q ss_pred HHHhCHHHHHHHHHHHHHHHhcCC
Q 031739 130 HWKADETEAVETAKEWTRLYASDG 153 (153)
Q Consensus 130 ~~~~~~~~f~~~~~~~~~~~a~~~ 153 (153)
+|.. .+-..+-+.-++.+++.|
T Consensus 92 ~~s~--~qa~~sfksLv~~heksg 113 (122)
T KOG0897|consen 92 LYSH--SQAQQSFKSLVQIHEKSG 113 (122)
T ss_pred HhhH--HHHHHHHHHHHHHHHhcC
Confidence 3332 222333444444444433
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.16 E-value=9.2e-06 Score=56.55 Aligned_cols=78 Identities=27% Similarity=0.528 Sum_probs=53.2
Q ss_pred CCceEEEEEeCCCCCCCCCcEEE--EEEEcCCCCCCCCCeEEEeccc-----cccceeCCCceeeccCCCCcCC-cCCHH
Q 031739 33 NMRYFNVMILGPSQSPYEGGVFK--LELFLPEDYPMSAPKVRFLTKI-----YHPNIDKLGRICLDILKDKWSP-ALQIR 104 (153)
Q Consensus 33 ~~~~w~~~i~Gp~~tpy~gg~f~--~~i~fp~~yP~~pP~v~f~t~i-----~Hpnv~~~G~icl~~l~~~W~p-~~~i~ 104 (153)
.+....++|. -.|+|..|. +.|.+|.+||.+||.+...... -+.+|+++|++.+..|. +|.. ..++.
T Consensus 31 ~LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~-~W~~~~s~L~ 105 (121)
T PF05743_consen 31 LLLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQ-NWNPPSSNLV 105 (121)
T ss_dssp EEEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHH-T--TTTS-HH
T ss_pred eEEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhc-cCCCCCCCHH
Confidence 3445555554 358887774 6788999999999999886332 24499999999988876 6766 77899
Q ss_pred HHHHHHHHHHc
Q 031739 105 TVLLSIQALLS 115 (153)
Q Consensus 105 ~il~~i~~ll~ 115 (153)
+++..+...|.
T Consensus 106 ~lv~~l~~~F~ 116 (121)
T PF05743_consen 106 DLVQELQAVFS 116 (121)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHHHHHh
Confidence 99888887764
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=97.94 E-value=5.5e-06 Score=58.39 Aligned_cols=96 Identities=21% Similarity=0.253 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhh-------CCCCCeEEEeCCCCCceEEEEEeCCCCCCCCC--cEEEEEEEcCCCCCCCCCeEEEecc-
Q 031739 7 PRRIVKETQRLLS-------EPAPGISASPAEDNMRYFNVMILGPSQSPYEG--GVFKLELFLPEDYPMSAPKVRFLTK- 76 (153)
Q Consensus 7 ~kRl~~E~~~l~~-------~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~g--g~f~~~i~fp~~yP~~pP~v~f~t~- 76 (153)
..||.+||..|-+ +....+.+. ++.+=+.|.+.-.= .++- .-|.+++.+|..||..||.|....-
T Consensus 26 ~~RLKEEy~aLI~Yv~~nK~~DndWF~le-sn~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLd 100 (161)
T PF08694_consen 26 VQRLKEEYQALIKYVENNKENDNDWFRLE-SNKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIALPELD 100 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---EEEE-E-TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B-GGGT
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeEEec-cCCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcceeccccC
Confidence 5899999988754 122334444 22233344333220 0111 2466777899999999999976421
Q ss_pred ccccceeCCCceeeccCC-CCc---CCcCCHHHHH
Q 031739 77 IYHPNIDKLGRICLDILK-DKW---SPALQIRTVL 107 (153)
Q Consensus 77 i~Hpnv~~~G~icl~~l~-~~W---~p~~~i~~il 107 (153)
--..-.|..|+||++... .-| .|.++|...|
T Consensus 101 GKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 101 GKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp TT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 123456778999998764 224 5777777654
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.0005 Score=55.09 Aligned_cols=81 Identities=21% Similarity=0.433 Sum_probs=63.0
Q ss_pred CCceEEEEEeCCCCCCCCCcEEE--EEEEcCCCCCCCCCeEEEecc-----ccccceeCCCceeeccCCCCcC-CcCCHH
Q 031739 33 NMRYFNVMILGPSQSPYEGGVFK--LELFLPEDYPMSAPKVRFLTK-----IYHPNIDKLGRICLDILKDKWS-PALQIR 104 (153)
Q Consensus 33 ~~~~w~~~i~Gp~~tpy~gg~f~--~~i~fp~~yP~~pP~v~f~t~-----i~Hpnv~~~G~icl~~l~~~W~-p~~~i~ 104 (153)
+++...++|. .+|.|.+|. +.|.+.+.||..||.+..... --|-+|+++|.|.|..|. +|. |+..+.
T Consensus 51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh-~W~~pssdLv 125 (365)
T KOG2391|consen 51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH-NWDPPSSDLV 125 (365)
T ss_pred chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc-cCCCccchHH
Confidence 4555555554 678887776 667899999999999876521 138999999999999998 565 677899
Q ss_pred HHHHHHHHHHcCCC
Q 031739 105 TVLLSIQALLSAPN 118 (153)
Q Consensus 105 ~il~~i~~ll~~p~ 118 (153)
.+++.|.+.|.++.
T Consensus 126 ~Liq~l~a~f~~~p 139 (365)
T KOG2391|consen 126 GLIQELIAAFSEDP 139 (365)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999887654
No 30
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.64 E-value=0.041 Score=36.46 Aligned_cols=27 Identities=33% Similarity=0.600 Sum_probs=22.6
Q ss_pred CCcEEEEEEEcCCCCCCCCCeEEEecc
Q 031739 50 EGGVFKLELFLPEDYPMSAPKVRFLTK 76 (153)
Q Consensus 50 ~gg~f~~~i~fp~~yP~~pP~v~f~t~ 76 (153)
..-.+.+.+.||++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345688999999999999999988653
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.59 E-value=0.0098 Score=39.82 Aligned_cols=68 Identities=19% Similarity=0.181 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhCCCCCeEEEeCCCCCceEEEEEe--CCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc
Q 031739 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMIL--GPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (153)
Q Consensus 8 kRl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~--Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~ 76 (153)
.+...|+..|+.--++.+ ......+...+.+.+. ....+.-....+.+.+.||++||..+|.|...+.
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 466778888876433333 2233444556666663 1234445567899999999999999999987754
No 32
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.0039 Score=43.54 Aligned_cols=94 Identities=21% Similarity=0.351 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEeCCCCCceEEEEEeCCCCCCCCCcE----------EEEEEEcCCCCCCCCCeEEEecc
Q 031739 7 PRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGV----------FKLELFLPEDYPMSAPKVRFLTK 76 (153)
Q Consensus 7 ~kRl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~----------f~~~i~fp~~yP~~pP~v~f~t~ 76 (153)
..||.+||+.|-.. +.-..++-..|.-.-..++||-|-|.+ |.+++.+|-.||...|.|....-
T Consensus 29 vqrlkeey~sli~y------vqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpel 102 (167)
T KOG3357|consen 29 VQRLKEEYQSLIAY------VQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPEL 102 (167)
T ss_pred HHHHHHHHHHHHHH------HHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccccc
Confidence 57999999887541 111122223343333457788887743 55667789999999998865311
Q ss_pred -ccccceeCCCceeeccCC-CCcC---CcCCHHHH
Q 031739 77 -IYHPNIDKLGRICLDILK-DKWS---PALQIRTV 106 (153)
Q Consensus 77 -i~Hpnv~~~G~icl~~l~-~~W~---p~~~i~~i 106 (153)
--.-..|..|.||+.... .-|. |.++|...
T Consensus 103 dgktakmyrggkiclt~hfkplwarn~pkfgiaha 137 (167)
T KOG3357|consen 103 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHA 137 (167)
T ss_pred CchhhhhhcCceEeeccccchhhhhcCcchhHHHH
Confidence 012234567999986543 4464 55555543
No 33
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.39 E-value=0.056 Score=37.62 Aligned_cols=90 Identities=17% Similarity=0.348 Sum_probs=60.1
Q ss_pred CCeEEEeCCCCCceEEEEEeC--CCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccccccceeCCCce--eec-------
Q 031739 23 PGISASPAEDNMRYFNVMILG--PSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRI--CLD------- 91 (153)
Q Consensus 23 ~g~~~~~~~~~~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~i--cl~------- 91 (153)
.|+..+...+.-..|.+ |.| .+.+.|....-.+-|.+|..||..+|.+.+..+-.... ..|.+ |-+
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G 88 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDG 88 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCC
Confidence 36666665565566765 655 56677999999999999999999988777665432111 11223 322
Q ss_pred -------cCCCCcCCcC-CHHHHHHHHHHHHc
Q 031739 92 -------ILKDKWSPAL-QIRTVLLSIQALLS 115 (153)
Q Consensus 92 -------~l~~~W~p~~-~i~~il~~i~~ll~ 115 (153)
-....|.|.. ++.+.|..|...|.
T Consensus 89 ~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 89 RTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 1135688887 58888888877663
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.33 E-value=0.032 Score=40.71 Aligned_cols=61 Identities=26% Similarity=0.424 Sum_probs=47.7
Q ss_pred EEEEcCCCCCCCCCeEEEecccc---ccceeCC-----CceeeccCC-CCcCCcCCHHHHHHHHHHHHcC
Q 031739 56 LELFLPEDYPMSAPKVRFLTKIY---HPNIDKL-----GRICLDILK-DKWSPALQIRTVLLSIQALLSA 116 (153)
Q Consensus 56 ~~i~fp~~yP~~pP~v~f~t~i~---Hpnv~~~-----G~icl~~l~-~~W~p~~~i~~il~~i~~ll~~ 116 (153)
+.|.|+.+||..+|.|.+....| +||++.. ..+|+..-. ..|.+..+++.+|..|..-|..
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 56899999999999877765443 5777765 679985443 5789999999999999887753
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=92.18 E-value=0.33 Score=38.75 Aligned_cols=86 Identities=22% Similarity=0.379 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEeCCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccccccceeCC
Q 031739 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 85 (153)
Q Consensus 6 ~~kRl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~ 85 (153)
.-++|.+|+.+|..+.. +.+. .++++....+.+. -+.....++|.++.+||.++|.+...-++
T Consensus 100 ~ys~ll~EIe~IGW~kl--~~i~-~d~~ls~i~l~~~------D~~R~H~l~l~l~~~yp~~~p~~~~~~P~-------- 162 (291)
T PF09765_consen 100 YYSNLLKEIEAIGWDKL--VQIQ-FDDDLSTIKLKIF------DSSRQHYLELKLPSNYPFEPPSCSLDLPI-------- 162 (291)
T ss_dssp GC-CHHHHHHHHHCGCC--EEEE-E-CCCSEEEEEEE------TTCEEEEEEEETTTTTTTSEEEECS-TTS--------
T ss_pred HHHHHHHHHHHhccccc--eEEe-cCCCccEEEEEEE------cCCceEEEEEEECCCCCCCCceeeCCCCc--------
Confidence 44678888888876532 2221 3678888888887 22367889999999999999965432221
Q ss_pred CceeeccCCCCcCC-cCCHHHHHHHHHHHH
Q 031739 86 GRICLDILKDKWSP-ALQIRTVLLSIQALL 114 (153)
Q Consensus 86 G~icl~~l~~~W~p-~~~i~~il~~i~~ll 114 (153)
.+...|.+ ..++.+++...+..+
T Consensus 163 ------~~~~~w~~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 163 ------PFSLSWSPSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp -------HHHHHHCHT-SHHHHHHHHHHHH
T ss_pred ------chhhhhcccccCHHHHHHHHHHHH
Confidence 11236877 567877766665554
No 36
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.79 E-value=3.5 Score=37.13 Aligned_cols=69 Identities=17% Similarity=0.306 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEeCCCCCceEEEEEeCCCCCCCCCcE-EEEEEEcCCCCCC-CCCeEEEecc
Q 031739 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGV-FKLELFLPEDYPM-SAPKVRFLTK 76 (153)
Q Consensus 6 ~~kRl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~-f~~~i~fp~~yP~-~pP~v~f~t~ 76 (153)
...-|.+|+..|-..- +.+.++-.+-.-..-.+.+.||-.-- .|.+ .++.|.||.+||. .+|+++|..+
T Consensus 421 ~pQnLgeE~S~Ig~k~-~nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 421 LPQNLGEEFSLIGVKI-RNVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhhHHhHHhHhhccc-cccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 3455677777665432 34444434444456777787765544 4444 4788999999998 5999999754
No 37
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=84.39 E-value=4.3 Score=30.87 Aligned_cols=62 Identities=24% Similarity=0.301 Sum_probs=36.6
Q ss_pred HHHHHHHHhhCCCCCe-EEEeCCCCCceEEEEEeCCCCCCCCC--cEEEEEEEcCCCCCCCCCeEEEe
Q 031739 10 IVKETQRLLSEPAPGI-SASPAEDNMRYFNVMILGPSQSPYEG--GVFKLELFLPEDYPMSAPKVRFL 74 (153)
Q Consensus 10 l~~E~~~l~~~~~~g~-~~~~~~~~~~~w~~~i~Gp~~tpy~g--g~f~~~i~fp~~yP~~pP~v~f~ 74 (153)
..+|+..|..--+.-+ .+ .+.+...+.+.|. ...+-++. +.+.+.+.++++||..+|.|.+.
T Consensus 7 Qe~E~EaLeSIY~de~~~i--~~~~~~~f~v~iq-~e~~e~d~~~~~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 7 QEEELEALESIYPDEFKHI--NSEDPPIFEVTIQ-YEEGENDEPKGSFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred HHHHHHHHHHhccchhhhh--hccCCccceeeee-cccccCCCccccEEEEEEccCCCCCCCcceecc
Confidence 4456666665433333 22 2333333666676 22222222 27889999999999999999443
No 38
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=82.09 E-value=2.3 Score=31.29 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=25.3
Q ss_pred eccccc---cceeCCCceeeccCCCCcCCcCCHHHHHHHHHHH-HcCC
Q 031739 74 LTKIYH---PNIDKLGRICLDILKDKWSPALQIRTVLLSIQAL-LSAP 117 (153)
Q Consensus 74 ~t~i~H---pnv~~~G~icl~~l~~~W~p~~~i~~il~~i~~l-l~~p 117 (153)
.|++|| +||+.+|.||+.... .|.....+.+..+... |.++
T Consensus 89 ~T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ 133 (175)
T PF14460_consen 89 DTPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSP 133 (175)
T ss_pred CCeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCC
Confidence 355677 399999999987633 3444444556666544 4444
No 39
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=64.28 E-value=50 Score=27.00 Aligned_cols=42 Identities=26% Similarity=0.577 Sum_probs=34.8
Q ss_pred CceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEe-ccccccc
Q 031739 34 MRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFL-TKIYHPN 81 (153)
Q Consensus 34 ~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~-t~i~Hpn 81 (153)
...+.+.| ||.|...+-+|.|...||..||-+.|- ..-|+|.
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 45677777 499999999999999999999999996 3347884
No 40
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=62.68 E-value=13 Score=28.75 Aligned_cols=39 Identities=21% Similarity=0.374 Sum_probs=25.5
Q ss_pred cccccc---ceeCCCceeeccCCCCcCCcC-CHHHHHHHHHHHHcCC
Q 031739 75 TKIYHP---NIDKLGRICLDILKDKWSPAL-QIRTVLLSIQALLSAP 117 (153)
Q Consensus 75 t~i~Hp---nv~~~G~icl~~l~~~W~p~~-~i~~il~~i~~ll~~p 117 (153)
|++||. ||+.+|+||+.... .|.. ++.+ +......|.+-
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S 173 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSS 173 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCC
Confidence 446663 89999999987653 4443 4555 77776665543
No 41
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=62.41 E-value=26 Score=21.69 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=35.9
Q ss_pred HHHHHHcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHhcC
Q 031739 109 SIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 152 (153)
Q Consensus 109 ~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 152 (153)
.|+.++..-++..-+.++|...+.+=-+.|...+-+-+.++|++
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkH 49 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKH 49 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666677999999999999999999999988888874
No 42
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=57.81 E-value=25 Score=28.73 Aligned_cols=28 Identities=25% Similarity=0.556 Sum_probs=23.3
Q ss_pred CcEEEEEEEcCCCCCCCCCeEEEeccccc
Q 031739 51 GGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (153)
Q Consensus 51 gg~f~~~i~fp~~yP~~pP~v~f~t~i~H 79 (153)
+-.|-++|.+|..||...|.++|.+- ||
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS~-yH 332 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQSV-YH 332 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEee-cc
Confidence 44688889999999999999999863 44
No 43
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=55.71 E-value=20 Score=25.40 Aligned_cols=25 Identities=24% Similarity=0.632 Sum_probs=22.5
Q ss_pred CCcEEEEEEEcCCCCC-CCCCeEEEe
Q 031739 50 EGGVFKLELFLPEDYP-MSAPKVRFL 74 (153)
Q Consensus 50 ~gg~f~~~i~fp~~yP-~~pP~v~f~ 74 (153)
+.|.|.|.-.+|-.|| ..||.|.|.
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 3589999999999999 999999886
No 44
>smart00340 HALZ homeobox associated leucin zipper.
Probab=55.65 E-value=11 Score=21.21 Aligned_cols=14 Identities=43% Similarity=0.472 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhhC
Q 031739 7 PRRIVKETQRLLSE 20 (153)
Q Consensus 7 ~kRl~~E~~~l~~~ 20 (153)
.+||++|+.+|...
T Consensus 21 NrRL~ke~~eLral 34 (44)
T smart00340 21 NRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHhc
Confidence 48999999999864
No 45
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=53.39 E-value=22 Score=26.67 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=24.7
Q ss_pred CCceeeccCCCCcCCcCCHHHHHHHHHHHH
Q 031739 85 LGRICLDILKDKWSPALQIRTVLLSIQALL 114 (153)
Q Consensus 85 ~G~icl~~l~~~W~p~~~i~~il~~i~~ll 114 (153)
.+.+|++++.+.|+|.+|+++-+.-++.++
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv 164 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCV 164 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHH
Confidence 357999999999999999988777666554
No 46
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=52.31 E-value=24 Score=26.36 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=22.5
Q ss_pred CCcEEEEEEEcCCCCCCCCCeEEEe
Q 031739 50 EGGVFKLELFLPEDYPMSAPKVRFL 74 (153)
Q Consensus 50 ~gg~f~~~i~fp~~yP~~pP~v~f~ 74 (153)
+.|.|.|+=.+|--||..+|.|.|.
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEE
Confidence 3588999999999999999999886
No 47
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=45.46 E-value=35 Score=20.83 Aligned_cols=41 Identities=15% Similarity=0.090 Sum_probs=30.8
Q ss_pred HHHHcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHhcC
Q 031739 111 QALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 152 (153)
Q Consensus 111 ~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 152 (153)
+.+..+-..+ .++.+++..+..+-+.+.+.+-+-+.+|+.+
T Consensus 9 ~ria~~~Gi~-ris~~a~~~l~~~~e~rl~~i~~~A~k~~~h 49 (65)
T smart00803 9 KDVAESLGIG-NLSDEAAKLLAEDVEYRIKEIVQEALKFMRH 49 (65)
T ss_pred HHHHHHCCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333 4789999999999999999999888888765
No 48
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=42.95 E-value=42 Score=24.28 Aligned_cols=24 Identities=25% Similarity=0.632 Sum_probs=21.8
Q ss_pred CcEEEEEEEcCCCCC-----CCCCeEEEe
Q 031739 51 GGVFKLELFLPEDYP-----MSAPKVRFL 74 (153)
Q Consensus 51 gg~f~~~i~fp~~yP-----~~pP~v~f~ 74 (153)
.|.|.|.-.+|--|| ..||.|.|.
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 488999999999999 899999886
No 49
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=41.42 E-value=95 Score=19.90 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=30.0
Q ss_pred ceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEeccccc
Q 031739 35 RYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (153)
Q Consensus 35 ~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H 79 (153)
..|.+-+.|+.+..-..-+=+++..+.+.|+. |...+..+-|.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPFe 44 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPFE 44 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTEE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCCE
Confidence 47999999988865556677888999999886 77777666443
No 50
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=36.99 E-value=35 Score=25.93 Aligned_cols=55 Identities=29% Similarity=0.434 Sum_probs=41.7
Q ss_pred CCCCeEEEecccccccee--CCCceeeccCCCCc--CCcCCHHHHHHHHHHHHcCCCCC
Q 031739 66 MSAPKVRFLTKIYHPNID--KLGRICLDILKDKW--SPALQIRTVLLSIQALLSAPNPD 120 (153)
Q Consensus 66 ~~pP~v~f~t~i~Hpnv~--~~G~icl~~l~~~W--~p~~~i~~il~~i~~ll~~p~~~ 120 (153)
..||.|-|-.+.|...|+ +-|.|--.+...+| .|+-.+.+-|..|..+|-.|+.+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed 225 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTED 225 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccc
Confidence 468999999999999888 45655555555566 57788888888888888777644
No 51
>PRK11700 hypothetical protein; Provisional
Probab=34.43 E-value=1.3e+02 Score=22.45 Aligned_cols=71 Identities=24% Similarity=0.474 Sum_probs=43.4
Q ss_pred CCceEEEEEe---CCCCCCC-CCcEEEEEEEcC--------------CCCCCCCCeEEEec--------ccccccee-CC
Q 031739 33 NMRYFNVMIL---GPSQSPY-EGGVFKLELFLP--------------EDYPMSAPKVRFLT--------KIYHPNID-KL 85 (153)
Q Consensus 33 ~~~~w~~~i~---Gp~~tpy-~gg~f~~~i~fp--------------~~yP~~pP~v~f~t--------~i~Hpnv~-~~ 85 (153)
....|.+.+. =|.+.-| .-|.=++.+++| ++.|..++-|++.. +.-+|-|- ++
T Consensus 87 ~~~~w~I~cvELP~P~~k~Yp~eGWEHIElVlp~~~~t~~~~~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~ 166 (187)
T PRK11700 87 QVGHWSIDCVELPYPGEKRYPHEGWEHIELVLPGDPETLDARALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTD 166 (187)
T ss_pred eeCCcEEEEEEeCCCCCCCCCCCCceEEEEEecCCcchHHHHHHHhccccccccCCcEEEecCCCccCccCCCCcEEEee
Confidence 3445655543 2333323 246778888877 33455666666653 24677777 68
Q ss_pred CceeeccCCCCcCCcCCHHHHHHH
Q 031739 86 GRICLDILKDKWSPALQIRTVLLS 109 (153)
Q Consensus 86 G~icl~~l~~~W~p~~~i~~il~~ 109 (153)
|.+|+.+.. +++++|+.+
T Consensus 167 ~~vcIK~HP------~slk~IV~S 184 (187)
T PRK11700 167 GGICIKFHP------HSIKEIVAS 184 (187)
T ss_pred CCEEEEEcC------ccHHHHHHh
Confidence 999998765 677777654
No 52
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=34.42 E-value=79 Score=23.62 Aligned_cols=55 Identities=22% Similarity=0.380 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHhhCCCCCeEEEeCCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeE
Q 031739 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKV 71 (153)
Q Consensus 6 ~~kRl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v 71 (153)
..+||++|++.+.++-...++..|.-+..-.+.+.+.--.+ ...|.++-.+-|++
T Consensus 120 ~~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD-----------~~vP~~W~eS~~~~ 174 (203)
T KOG3285|consen 120 DLKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKD-----------TEVPEKWDESGPKL 174 (203)
T ss_pred HHHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCC-----------ccCCcchhcCCCeE
Confidence 46999999999999888888888877777778887763332 34677776666654
No 53
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=34.03 E-value=58 Score=25.73 Aligned_cols=30 Identities=17% Similarity=0.089 Sum_probs=26.3
Q ss_pred CcccHHHHHHHHhCHHHHHHHHHHHHHHHh
Q 031739 121 DPLSDNIAKHWKADETEAVETAKEWTRLYA 150 (153)
Q Consensus 121 ~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a 150 (153)
...+.+|+..|..|++.|...+.+.+++.+
T Consensus 237 ~F~s~~aa~~F~~~P~~yi~~v~~~ar~~p 266 (281)
T PF12018_consen 237 AFSSREAAYRFAEDPERYIQAVLEKARKNP 266 (281)
T ss_pred EeCCHHHHHHHHHCHHHHHHHHHHHHhhCH
Confidence 346889999999999999999999998754
No 54
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=33.20 E-value=1.2e+02 Score=18.66 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=30.9
Q ss_pred HHHHHHcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHHhcC
Q 031739 109 SIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLYASD 152 (153)
Q Consensus 109 ~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 152 (153)
.|+.++..-++...+++++..+...=-..|...+-..+-+.|++
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKh 47 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKH 47 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46677777788888999999988888888988888777777653
No 55
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.04 E-value=61 Score=19.31 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=20.6
Q ss_pred CCCCchHHHHHHHHHHHhhCCCCCeE
Q 031739 1 MASGNLPRRIVKETQRLLSEPAPGIS 26 (153)
Q Consensus 1 m~~~~~~kRl~~E~~~l~~~~~~g~~ 26 (153)
|+|+-+..-..+|+++.+++.+.+..
T Consensus 28 mSsGEAIa~VA~elRe~hk~~~~~~~ 53 (60)
T COG3140 28 MSSGEAIALVAQELRENHKGENRIVA 53 (60)
T ss_pred ccchhHHHHHHHHHHHHhcccccccc
Confidence 67888889999999998887655543
No 56
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=31.86 E-value=63 Score=26.18 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=21.9
Q ss_pred cEEEEEEEcCCCCCCCCCeEEEecc
Q 031739 52 GVFKLELFLPEDYPMSAPKVRFLTK 76 (153)
Q Consensus 52 g~f~~~i~fp~~yP~~pP~v~f~t~ 76 (153)
-.+.+.+..++.||...|+|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4677889999999999999998866
No 57
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=30.36 E-value=52 Score=28.88 Aligned_cols=29 Identities=38% Similarity=0.817 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEEEcCCCCCC---CCCeEEEecc
Q 031739 47 SPYEGGVFKLELFLPEDYPM---SAPKVRFLTK 76 (153)
Q Consensus 47 tpy~gg~f~~~i~fp~~yP~---~pP~v~f~t~ 76 (153)
+||.=|.|-+ +.+|++||+ +-|-++|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 5777788877 557999997 6899999987
No 58
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=29.61 E-value=83 Score=23.56 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=20.9
Q ss_pred CCcEEEEEEEcCCCCCC-----CCCeEEEe
Q 031739 50 EGGVFKLELFLPEDYPM-----SAPKVRFL 74 (153)
Q Consensus 50 ~gg~f~~~i~fp~~yP~-----~pP~v~f~ 74 (153)
+.|.|.|+-..|-.||. .||.|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 34889999999999998 88888775
No 59
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=29.07 E-value=2.3e+02 Score=21.60 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=37.9
Q ss_pred CchHHHHHHHHHHHhhCCCCCeEEEeCCCCCceEEEEEeCCCCCC-CCCcEEEEEEEcCCCC------------------
Q 031739 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSP-YEGGVFKLELFLPEDY------------------ 64 (153)
Q Consensus 4 ~~~~kRl~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tp-y~gg~f~~~i~fp~~y------------------ 64 (153)
.++..||.+.++++++.. .+...-|.+.+. |...- | || |.+.++|.++=
T Consensus 8 ~s~~eR~~e~~~~~k~~L---------~~a~~GW~~~yy-p~~~~~~-GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~ 75 (235)
T PF14135_consen 8 KSPAERINEALAEYKKIL---------TSAPNGWKLEYY-PKTDQSY-GG-YTFLMKFDDDGKVTMASDFDSASTPSTSS 75 (235)
T ss_pred CCHHHHHHHHHHHHHHHH---------hcCCCceEEEEE-CCCCccC-Cc-EEEEEEECCCCeEEEEEccCCCCceeeEE
Confidence 456788887776666521 111223555666 33322 3 33 66666665443
Q ss_pred ----CCCCCeEEEec--cccccceeC
Q 031739 65 ----PMSAPKVRFLT--KIYHPNIDK 84 (153)
Q Consensus 65 ----P~~pP~v~f~t--~i~Hpnv~~ 84 (153)
...-|.+.|.| ++.|-..++
T Consensus 76 Y~~~~~~gp~LsFdTyN~~iH~~s~p 101 (235)
T PF14135_consen 76 YRLKQDQGPVLSFDTYNEYIHYFSDP 101 (235)
T ss_pred EEEecCCceEEEEEeCCceEEEccCC
Confidence 22348888875 367766554
No 60
>PF00718 Polyoma_coat: Polyomavirus coat protein This family is a subset of the SCOP family; InterPro: IPR000662 This entry represents the major capsid protein VP1 (viral protein 1) from Polyomaviruses, such as Murine polyomavirus (strain P16 small-plaque) (MPyV) []. Polyomaviruses are dsDNA viruses with no RNA stage in their life cycle. The virus capsid is composed of 72 icosahedral units, each of which is composed of five copies of VP1. The virus attaches to the cell surface by recognition of oligosaccharides terminating in alpha(2,3)-linked sialic acid. The capsid protein VP1 forms a pentamer. The complete capsid is composed of 72 VP1 pentamers, with a minor capsid protein, VP2 or VP3, inserted into the centre of each pentamer like a hairpin. This structure restricts the exposure of internal proteins during viral entry. Polyomavirus coat assembly is rigorously controlled by chaperone-mediated assembly. During viral infection, the heat shock chaperone hsc70 binds VP1 and co-localises it in the nucleus, thereby regulating capsid assembly [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 3NXG_C 3NXD_D 1CN3_C 1SID_D 1VPS_B 1SIE_A 1VPN_A 3S7V_F 3S7X_A 3BWQ_C ....
Probab=28.92 E-value=1.4e+02 Score=23.86 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=19.7
Q ss_pred CCCcEEEEEEEcCCCCCCCCCeEEEeccccccceeCCCc--eee
Q 031739 49 YEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGR--ICL 90 (153)
Q Consensus 49 y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~--icl 90 (153)
=|+..|..++.=... .||.+.|....--+.+|++|. +|.
T Consensus 194 NENtRYFG~~tGG~~---TPPVl~ftNt~TTvLLDENGVGpLCk 234 (297)
T PF00718_consen 194 NENTRYFGSYTGGAN---TPPVLQFTNTVTTVLLDENGVGPLCK 234 (297)
T ss_dssp STTEEEEEEEE-SSS------EEEEESSEEEE---TTS--EEEC
T ss_pred CcCceeeEeecCCCC---CCCeEEeccceeEEEEccCCcccccc
Confidence 344444444443332 489999998888888998754 663
No 61
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=27.50 E-value=97 Score=23.03 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=19.8
Q ss_pred CcEEEEEEEcCCCCCC-----CCCeEEEe
Q 031739 51 GGVFKLELFLPEDYPM-----SAPKVRFL 74 (153)
Q Consensus 51 gg~f~~~i~fp~~yP~-----~pP~v~f~ 74 (153)
.|.|.|.-.+|--||. .||.|.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3889999999999995 78877664
No 62
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=26.64 E-value=1.8e+02 Score=24.41 Aligned_cols=73 Identities=18% Similarity=0.180 Sum_probs=44.1
Q ss_pred HHHHHHHHhhCCCCCeEEEeCCCCCceEEEEEeCCCCCCCCCcEEE---------EEEEcCCCCCCCCCeEEEecccccc
Q 031739 10 IVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFK---------LELFLPEDYPMSAPKVRFLTKIYHP 80 (153)
Q Consensus 10 l~~E~~~l~~~~~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~---------~~i~fp~~yP~~pP~v~f~t~i~Hp 80 (153)
+..|.++|+...|..-.+..... ....+.|. |... +-.+.++ +. .|...|++.||-++....|.|-
T Consensus 250 ne~Ev~Rir~eHPdd~~~vv~~~--~RvkG~L~-vsRA-fGd~~lK~~~~n~e~l~~-~fr~~~~~t~PyltaeP~i~~H 324 (390)
T KOG0700|consen 250 NEDEVRRIRSEHPDDPHIVVNKH--WRVKGILQ-VSRA-FGDGYLKWPEFNQEPLLE-KFRIPYIGTPPYLTAEPSITHH 324 (390)
T ss_pred cHHHHHHHHHhCCCCcceEeecc--ceeeEEEE-eeee-ccceeecchhhccchhHh-hcCCCCCCCCCceeccceEEEE
Confidence 56777888876654433332222 23344454 2222 3333333 11 6888999999999999988877
Q ss_pred ceeCCCc
Q 031739 81 NIDKLGR 87 (153)
Q Consensus 81 nv~~~G~ 87 (153)
.+.++-+
T Consensus 325 rL~p~Dk 331 (390)
T KOG0700|consen 325 KLTPNDK 331 (390)
T ss_pred EcCCCCe
Confidence 7776554
No 63
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=26.35 E-value=1.7e+02 Score=19.13 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=21.0
Q ss_pred CCCcEEEEEEEcCCCCCCCCCeEEEecc
Q 031739 49 YEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (153)
Q Consensus 49 y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 76 (153)
-+|..+.|...-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46778888888899999 489988865
No 64
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=23.51 E-value=1.3e+02 Score=16.30 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCCCCCCcccHHHHHH
Q 031739 104 RTVLLSIQALLSAPNPDDPLSDNIAKH 130 (153)
Q Consensus 104 ~~il~~i~~ll~~p~~~~~~n~~aa~~ 130 (153)
..|+.++++.|.+|+.++-.-..|.+.
T Consensus 4 ~~V~~G~KAal~NPnvSeeaK~~A~~~ 30 (36)
T PF10346_consen 4 NNVAGGYKAALHNPNVSEEAKQHAREK 30 (36)
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHH
Confidence 457788899999998876555544443
No 65
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=23.33 E-value=62 Score=19.53 Aligned_cols=13 Identities=31% Similarity=0.294 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhh
Q 031739 7 PRRIVKETQRLLS 19 (153)
Q Consensus 7 ~kRl~~E~~~l~~ 19 (153)
.+||++|+.++--
T Consensus 36 r~rL~kEL~d~D~ 48 (59)
T PF12065_consen 36 RQRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHHccc
Confidence 4688888887654
No 66
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=23.25 E-value=84 Score=22.12 Aligned_cols=21 Identities=19% Similarity=0.418 Sum_probs=17.3
Q ss_pred CCCCCceEEEEEeCCCCCCCC
Q 031739 30 AEDNMRYFNVMILGPSQSPYE 50 (153)
Q Consensus 30 ~~~~~~~w~~~i~Gp~~tpy~ 50 (153)
.+.|...|.|++.|++|++..
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~ 63 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRK 63 (139)
T ss_pred cCCCCcceEEEEECCCCccee
Confidence 466788899999999988765
No 67
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=22.89 E-value=1.4e+02 Score=21.99 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=34.3
Q ss_pred cCCcCCHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHH
Q 031739 97 WSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLY 149 (153)
Q Consensus 97 W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~ 149 (153)
|.....+..+...|...|..-+|+ -+..|++|.+.|.++.++-.+++
T Consensus 111 Wldp~~~~~~a~~I~~~L~~~dP~------~~~~y~~N~~~~~~~l~~l~~~~ 157 (203)
T cd01145 111 WLDPNNAPALAKALADALIELDPS------EQEEYKENLRVFLAKLNKLLREW 157 (203)
T ss_pred ecCHHHHHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 776677888888888888766544 35678888888888776655544
No 68
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=21.71 E-value=3.3e+02 Score=19.89 Aligned_cols=68 Identities=13% Similarity=0.239 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHHhhCC----CCCeEEEeCCCCCceEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCeEEEecc
Q 031739 5 NLPRRIVKETQRLLSEP----APGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (153)
Q Consensus 5 ~~~kRl~~E~~~l~~~~----~~g~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~ 76 (153)
-+.+.+-+|...+.... -.|+.+. +.+.=...+++..|.-.|-. -...++|.| .||-..||.|.|+.+
T Consensus 5 vSrakFdR~V~~~~~~~~a~r~rgwfLi--qa~fP~~~~iF~~~kvaP~~-~~~~lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 5 VSRAKFDRQVGRFRPRADAYRMRGWFLI--QASFPTADVIFAAPKVAPRS-IGLRLRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred HhHHHHHHHHhhhhhhhhHhhhcCeEEE--EccCceEEEEeeCCccCccc-cceEEEEec-cccCcCCCceEEecc
Confidence 34455667777766543 2566654 33444555555556666632 224566666 789999999999876
No 69
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=21.01 E-value=1.4e+02 Score=17.82 Aligned_cols=21 Identities=5% Similarity=0.048 Sum_probs=18.0
Q ss_pred ccHHHHHHHHhCHHHHHHHHH
Q 031739 123 LSDNIAKHWKADETEAVETAK 143 (153)
Q Consensus 123 ~n~~aa~~~~~~~~~f~~~~~ 143 (153)
-|++.+++..+|+++|.....
T Consensus 34 ~nP~l~q~I~~n~e~Fl~ll~ 54 (59)
T PF09280_consen 34 SNPQLLQLIQQNPEEFLRLLN 54 (59)
T ss_dssp CSHHHHHHHHHTHHHHHHHHH
T ss_pred cCHHHHHHHHHCHHHHHHHHc
Confidence 488999999999999988654
No 70
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.68 E-value=2e+02 Score=22.18 Aligned_cols=47 Identities=19% Similarity=0.322 Sum_probs=34.9
Q ss_pred cCCcCCHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhCHHHHHHHHHHHHHHH
Q 031739 97 WSPALQIRTVLLSIQALLSAPNPDDPLSDNIAKHWKADETEAVETAKEWTRLY 149 (153)
Q Consensus 97 W~p~~~i~~il~~i~~ll~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~ 149 (153)
|........+...|...|..-+|++ +..|+.|.++|.++.+...+++
T Consensus 98 Wldp~n~~~~a~~I~~~L~~~dP~~------~~~y~~N~~~~~~~l~~l~~~~ 144 (264)
T cd01020 98 WYDPETMSKVANALADALVKADPDN------KKYYQANAKKFVASLKPLAAKI 144 (264)
T ss_pred ecCHhHHHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888899988887665542 4678888888888877665554
No 71
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=20.59 E-value=97 Score=18.54 Aligned_cols=18 Identities=11% Similarity=0.409 Sum_probs=11.5
Q ss_pred CcCCcCCHHHHHHHHHHH
Q 031739 96 KWSPALQIRTVLLSIQAL 113 (153)
Q Consensus 96 ~W~p~~~i~~il~~i~~l 113 (153)
+|.|.+++++++......
T Consensus 37 gW~p~~~L~~~i~~~w~W 54 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNW 54 (62)
T ss_dssp ----SSSHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHH
Confidence 899999999999876553
Done!