BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031744
         (153 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TU5|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
           Oxidase
 pdb|1TU5|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
           Oxidase
 pdb|2PNC|A Chain A, Crystal Structure Of Bovine Plasma Copper-Containing Amine
           Oxidase In Complex With Clonidine
 pdb|2PNC|B Chain B, Crystal Structure Of Bovine Plasma Copper-Containing Amine
           Oxidase In Complex With Clonidine
          Length = 746

 Score = 28.1 bits (61), Expect = 2.3,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 100 TGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCI-TFDFSIG 145
           TG F    SQV PG TPP  +  +   +     +V + + TF F +G
Sbjct: 279 TGGFWSLKSQVPPGPTPPLQFHPQGPRFSVQGNRVASSLWTFSFGLG 325


>pdb|2XLA|A Chain A, Structure And Metal-Loading Of A Soluble Periplasm
           Cupro-Protein: Cu- Cuca-Closed
 pdb|2XLA|B Chain B, Structure And Metal-Loading Of A Soluble Periplasm
           Cupro-Protein: Cu- Cuca-Closed
 pdb|2XLA|C Chain C, Structure And Metal-Loading Of A Soluble Periplasm
           Cupro-Protein: Cu- Cuca-Closed
 pdb|2XLA|D Chain D, Structure And Metal-Loading Of A Soluble Periplasm
           Cupro-Protein: Cu- Cuca-Closed
 pdb|2XLG|A Chain A, Structure And Metal-Loading Of A Soluble Periplasm
           Cupro-Protein: Cu- Cuca-Open
          Length = 239

 Score = 26.6 bits (57), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 83  IHSETHDLCDETSCPVSTGDFVVAHSQVLPGFTP 116
           I++  +++ D  SC      F +AH+Q+ PG  P
Sbjct: 23  IYTPANEIFDIASCSAKDIGFAIAHAQIPPGGGP 56


>pdb|3T8S|A Chain A, Apo And Insp3-Bound Crystal Structures Of The
           Ligand-Binding Domain Of An Insp3 Receptor
 pdb|3T8S|B Chain B, Apo And Insp3-Bound Crystal Structures Of The
           Ligand-Binding Domain Of An Insp3 Receptor
          Length = 585

 Score = 26.2 bits (56), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 57  FSISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDETSC 96
           + + +  D  + G K+V++    G  +H+ +H L D   C
Sbjct: 165 YKLRSIGDSVVIGDKVVLNPVNAGQPLHASSHQLVDNPGC 204


>pdb|1XZZ|A Chain A, Crystal Structure Of The Ligand Binding Suppressor Domain
           Of Type 1 Inositol 1,4,5-trisphosphate Receptor
          Length = 246

 Score = 26.2 bits (56), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 57  FSISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDETSC 96
           + + +  D  + G K+V++    G  +H+ +H L D   C
Sbjct: 182 YKLRSIGDSVVIGDKVVLNPVNAGQPLHASSHQLVDNPGC 221


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,537,544
Number of Sequences: 62578
Number of extensions: 179224
Number of successful extensions: 325
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 319
Number of HSP's gapped (non-prelim): 9
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)