Query 031744
Match_columns 153
No_of_seqs 104 out of 627
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 04:45:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031744.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031744hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4680 Uncharacterized conser 100.0 5.3E-31 1.1E-35 186.6 15.6 134 19-153 20-153 (153)
2 cd00917 PG-PI_TP The phosphati 100.0 1.2E-30 2.7E-35 185.4 16.0 116 26-142 1-122 (122)
3 smart00737 ML Domain involved 100.0 1.1E-27 2.3E-32 168.8 14.8 113 26-142 1-118 (118)
4 PF02221 E1_DerP2_DerF2: ML do 100.0 4.9E-27 1.1E-31 168.1 14.2 121 23-144 1-134 (134)
5 cd00918 Der-p2_like Several gr 99.9 6.6E-27 1.4E-31 165.7 10.7 117 26-144 1-120 (120)
6 cd00916 Npc2_like Niemann-Pick 99.9 2.1E-26 4.6E-31 163.9 12.2 116 26-142 1-123 (123)
7 cd00912 ML The ML (MD-2-relate 99.9 1.7E-24 3.7E-29 154.6 14.3 112 26-141 1-126 (127)
8 KOG4063 Major epididymal secre 99.9 1.6E-24 3.4E-29 156.0 13.8 126 20-146 21-158 (158)
9 cd00915 MD-1_MD-2 MD-1 and MD- 99.9 8.1E-21 1.8E-25 135.5 12.1 113 23-142 10-130 (130)
10 cd00258 GM2-AP GM2 activator p 99.8 1.3E-19 2.8E-24 132.8 14.7 121 23-146 2-161 (162)
11 PF14558 TRP_N: ML-like domain 99.1 3.6E-09 7.9E-14 76.9 12.0 117 23-144 4-136 (141)
12 PF15418 DUF4625: Domain of un 97.3 0.012 2.7E-07 42.3 11.9 93 49-144 32-131 (132)
13 smart00697 DM8 Repeats found i 96.7 0.0036 7.8E-08 41.4 4.6 36 95-130 41-80 (93)
14 PF14524 Wzt_C: Wzt C-terminal 95.7 0.21 4.5E-06 34.9 9.6 89 36-127 12-108 (142)
15 PF02115 Rho_GDI: RHO protein 95.2 0.27 5.8E-06 37.8 9.3 95 49-147 103-200 (200)
16 smart00675 DM11 Domains in hyp 95.1 0.72 1.6E-05 34.4 11.2 106 23-132 10-162 (164)
17 PF10633 NPCBM_assoc: NPCBM-as 94.4 0.32 7E-06 31.2 7.0 72 50-127 2-76 (78)
18 PF07705 CARDB: CARDB; InterP 94.3 0.87 1.9E-05 29.7 9.2 82 36-128 3-85 (101)
19 PF06477 DUF1091: Protein of u 94.3 0.052 1.1E-06 35.1 3.0 28 95-122 50-81 (81)
20 PF04234 CopC: CopC domain; I 93.5 0.51 1.1E-05 31.7 6.9 28 106-133 60-87 (97)
21 PRK10301 hypothetical protein; 92.4 0.37 8E-06 34.2 5.1 28 106-133 87-114 (124)
22 PLN02991 oxidoreductase 91.6 0.91 2E-05 40.0 7.6 68 35-109 31-118 (543)
23 PLN02354 copper ion binding / 91.4 0.82 1.8E-05 40.3 7.1 68 35-109 30-117 (552)
24 PLN00044 multi-copper oxidase- 91.3 1.4 3E-05 39.3 8.5 74 34-109 29-119 (596)
25 KOG3205 Rho GDP-dissociation i 90.1 6.9 0.00015 29.8 10.4 91 49-147 101-198 (200)
26 PF00339 Arrestin_N: Arrestin 88.9 0.65 1.4E-05 32.6 3.8 32 95-126 87-126 (149)
27 TIGR02186 alph_Pro_TM conserve 88.3 2.5 5.4E-05 33.9 7.0 42 104-147 181-222 (261)
28 PF07495 Y_Y_Y: Y_Y_Y domain; 88.2 0.84 1.8E-05 27.8 3.5 30 115-144 36-65 (66)
29 PLN02835 oxidoreductase 87.3 4.2 9.1E-05 35.8 8.5 34 76-109 84-119 (539)
30 PF09608 Alph_Pro_TM: Putative 86.4 3.9 8.4E-05 32.2 7.1 42 104-147 156-197 (236)
31 PLN02168 copper ion binding / 84.4 7.7 0.00017 34.2 8.7 68 35-109 29-116 (545)
32 COG1470 Predicted membrane pro 84.2 21 0.00046 31.0 10.9 32 98-129 438-470 (513)
33 KOG1263 Multicopper oxidases [ 83.7 16 0.00034 32.6 10.2 35 74-109 81-118 (563)
34 COG2372 CopC Uncharacterized p 82.2 5.3 0.00011 28.5 5.6 37 106-144 88-124 (127)
35 cd00912 ML The ML (MD-2-relate 81.4 4.5 9.8E-05 28.2 5.1 40 87-126 15-55 (127)
36 PLN02792 oxidoreductase 79.7 5.6 0.00012 35.0 6.1 34 76-109 71-106 (536)
37 PLN02191 L-ascorbate oxidase 79.2 8.8 0.00019 34.1 7.2 16 94-109 99-115 (574)
38 PF01835 A2M_N: MG2 domain; I 78.5 6.6 0.00014 25.9 5.0 27 105-131 64-90 (99)
39 PF00868 Transglut_N: Transglu 78.4 12 0.00027 26.0 6.5 78 49-127 29-117 (118)
40 PF02221 E1_DerP2_DerF2: ML do 78.3 5.2 0.00011 27.7 4.6 34 45-78 84-117 (134)
41 PRK05461 apaG CO2+/MG2+ efflux 75.1 9.8 0.00021 27.1 5.3 50 95-147 72-123 (127)
42 smart00737 ML Domain involved 73.4 8.9 0.00019 26.2 4.7 33 46-78 71-103 (118)
43 PF13002 LDB19: Arrestin_N ter 73.0 19 0.0004 27.6 6.6 54 95-148 44-115 (191)
44 PF07732 Cu-oxidase_3: Multico 72.5 7.2 0.00016 27.1 4.0 24 93-120 69-93 (117)
45 PF03443 Glyco_hydro_61: Glyco 72.5 18 0.00039 28.0 6.6 39 105-143 136-181 (218)
46 cd00916 Npc2_like Niemann-Pick 72.3 9.2 0.0002 26.8 4.6 40 88-127 16-56 (123)
47 cd00918 Der-p2_like Several gr 71.3 10 0.00022 26.6 4.6 29 46-74 72-100 (120)
48 PF13754 Big_3_4: Bacterial Ig 68.9 17 0.00037 21.6 4.6 23 110-133 17-39 (54)
49 PF15432 Sec-ASP3: Accessory S 67.5 20 0.00044 25.6 5.4 33 98-133 50-83 (128)
50 PF13752 DUF4165: Domain of un 66.8 33 0.00071 24.4 6.3 44 100-145 77-120 (124)
51 KOG3780 Thioredoxin binding pr 65.2 23 0.0005 29.6 6.3 33 98-130 102-142 (427)
52 PF11141 DUF2914: Protein of u 64.9 31 0.00068 21.5 5.5 40 98-142 25-65 (66)
53 PLN02604 oxidoreductase 64.8 54 0.0012 29.1 8.7 16 94-109 100-116 (566)
54 PF10029 DUF2271: Predicted pe 61.6 32 0.00068 24.8 5.6 45 98-144 74-120 (139)
55 PF02494 HYR: HYR domain; Int 60.2 15 0.00032 23.4 3.4 25 113-138 52-76 (81)
56 PF05404 TRAP-delta: Transloco 58.8 75 0.0016 23.8 9.8 25 105-131 80-105 (167)
57 PF13750 Big_3_3: Bacterial Ig 58.3 55 0.0012 23.9 6.6 45 99-145 104-148 (158)
58 TIGR01480 copper_res_A copper- 57.3 19 0.00042 32.1 4.6 17 93-109 117-134 (587)
59 PF04729 ASF1_hist_chap: ASF1 54.1 29 0.00063 25.6 4.4 105 36-143 3-114 (154)
60 TIGR03390 ascorbOXfungal L-asc 54.0 45 0.00098 29.3 6.4 16 94-109 84-100 (538)
61 PF12690 BsuPI: Intracellular 53.1 18 0.0004 23.5 2.9 26 98-124 56-82 (82)
62 TIGR03389 laccase laccase, pla 52.8 47 0.001 29.2 6.3 16 94-109 78-94 (539)
63 PF04379 DUF525: Protein of un 51.5 30 0.00064 23.0 3.8 34 95-130 55-90 (90)
64 PF11797 DUF3324: Protein of u 49.3 32 0.0007 24.5 4.0 37 106-145 93-130 (140)
65 cd00917 PG-PI_TP The phosphati 48.9 57 0.0012 22.6 5.1 31 95-125 21-53 (122)
66 TIGR03711 acc_sec_asp3 accesso 48.3 40 0.00086 24.3 4.3 36 95-133 57-94 (135)
67 PRK12633 flgD flagellar basal 47.9 31 0.00067 27.0 4.0 20 114-133 169-188 (230)
68 PRK12634 flgD flagellar basal 46.6 36 0.00078 26.5 4.1 18 115-132 163-180 (221)
69 TIGR03786 strep_pil_rpt strept 43.8 78 0.0017 19.6 6.1 34 99-133 8-46 (64)
70 PF12245 Big_3_2: Bacterial Ig 42.3 77 0.0017 19.1 5.6 23 111-133 16-38 (60)
71 COG1952 SecB Preprotein transl 41.8 42 0.00092 24.8 3.6 27 72-98 76-106 (157)
72 PRK13031 preprotein translocas 41.5 52 0.0011 24.1 4.0 46 53-98 53-103 (149)
73 PF08737 Rgp1: Rgp1; InterPro 40.4 1.2E+02 0.0026 25.8 6.7 48 98-145 115-172 (415)
74 PF06775 Seipin: Putative adip 39.4 1.2E+02 0.0026 22.9 6.0 38 98-136 53-94 (199)
75 PF12988 DUF3872: Domain of un 39.1 99 0.0022 22.4 5.1 104 24-133 16-126 (137)
76 PRK12812 flgD flagellar basal 39.0 49 0.0011 26.5 3.9 19 115-133 182-200 (259)
77 PF07127 Nodulin_late: Late no 39.0 51 0.0011 19.5 3.2 33 1-33 1-34 (54)
78 COG2967 ApaG Uncharacterized p 38.8 81 0.0018 22.4 4.5 34 98-133 75-109 (126)
79 PF02402 Lysis_col: Lysis prot 37.1 37 0.00081 19.7 2.1 28 5-32 3-30 (46)
80 PF09551 Spore_II_R: Stage II 36.4 42 0.00092 24.0 2.9 26 115-141 93-119 (130)
81 KOG4063 Major epididymal secre 34.6 89 0.0019 23.1 4.3 20 47-66 108-127 (158)
82 PF14734 DUF4469: Domain of un 33.6 1.3E+02 0.0028 20.5 4.8 27 106-132 65-91 (102)
83 KOG3265 Histone chaperone invo 33.2 2.5E+02 0.0054 22.3 6.8 79 36-117 3-86 (250)
84 cd00146 PKD polycystic kidney 31.0 1.3E+02 0.0028 18.5 4.4 17 117-133 56-72 (81)
85 PF00801 PKD: PKD domain; Int 30.0 74 0.0016 19.2 3.0 16 117-132 51-66 (69)
86 cd00915 MD-1_MD-2 MD-1 and MD- 30.0 89 0.0019 22.3 3.7 31 45-76 81-113 (130)
87 COG5137 Histone chaperone invo 29.6 2.7E+02 0.0058 22.0 6.4 76 36-112 3-79 (279)
88 TIGR03388 ascorbase L-ascorbat 29.3 2.4E+02 0.0053 24.8 7.0 16 94-109 77-93 (541)
89 TIGR02837 spore_II_R stage II 29.0 63 0.0014 24.2 2.8 26 115-141 128-154 (168)
90 PF13473 Cupredoxin_1: Cupredo 28.7 43 0.00093 22.2 1.8 25 36-60 24-50 (104)
91 PRK10965 multicopper oxidase; 28.4 76 0.0016 27.9 3.7 15 95-109 117-132 (523)
92 COG3656 Predicted periplasmic 27.4 1.6E+02 0.0035 21.6 4.6 45 99-145 102-148 (172)
93 PTZ00487 ceramidase; Provision 27.2 4E+02 0.0088 24.6 8.1 90 40-130 596-695 (715)
94 smart00060 FN3 Fibronectin typ 25.6 1.3E+02 0.0029 16.8 3.8 25 107-131 57-81 (83)
95 PF03170 BcsB: Bacterial cellu 24.7 2.7E+02 0.0059 24.7 6.5 83 49-140 338-420 (605)
96 PF11033 ComJ: Competence prot 24.0 1.5E+02 0.0032 21.1 3.8 16 94-109 90-105 (125)
97 smart00089 PKD Repeats in poly 23.9 91 0.002 19.1 2.6 16 117-132 54-69 (79)
98 KOG1903 Cell cycle-associated 23.9 47 0.001 24.9 1.4 23 85-107 77-101 (217)
99 PF02018 CBM_4_9: Carbohydrate 23.4 1.8E+02 0.004 19.1 4.3 31 96-131 56-87 (131)
100 PRK14710 hypothetical protein; 23.3 1.8E+02 0.0038 18.7 3.7 32 95-131 48-79 (86)
101 TIGR00809 secB protein-export 23.0 1.4E+02 0.003 21.7 3.6 57 41-98 39-100 (140)
102 PF10648 Gmad2: Immunoglobulin 22.9 2E+02 0.0043 18.9 4.1 27 104-131 59-85 (88)
103 TIGR03660 T1SS_rpt_143 T1SS-14 22.8 2.9E+02 0.0064 19.8 6.3 49 101-151 66-116 (137)
104 PF13860 FlgD_ig: FlgD Ig-like 22.7 1.1E+02 0.0023 19.5 2.7 31 99-129 48-80 (81)
105 PRK06655 flgD flagellar basal 22.3 1.4E+02 0.003 23.3 3.8 11 98-108 167-177 (225)
106 PRK13211 N-acetylglucosamine-b 22.3 5.4E+02 0.012 22.6 12.3 39 105-145 367-405 (478)
107 TIGR02588 conserved hypothetic 21.7 3E+02 0.0066 19.5 5.1 13 120-132 51-63 (122)
108 PRK10081 entericidin B membran 21.7 96 0.0021 18.3 2.1 14 4-17 3-16 (48)
109 PF10651 DUF2479: Domain of un 21.2 2.3E+02 0.0049 20.7 4.6 43 100-147 81-126 (170)
110 PF00041 fn3: Fibronectin type 20.7 1.7E+02 0.0037 17.5 3.4 24 109-132 58-81 (85)
111 PF10913 DUF2706: Protein of u 20.4 60 0.0013 19.6 1.1 7 41-47 42-48 (60)
112 TIGR03769 P_ac_wall_RPT actino 20.4 1.7E+02 0.0036 16.4 2.9 17 116-132 11-29 (41)
No 1
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=99.97 E-value=5.3e-31 Score=186.62 Aligned_cols=134 Identities=67% Similarity=1.090 Sum_probs=126.8
Q ss_pred hhcccccceecCcCCCccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEcccCcCCCCCCCCCC
Q 031744 19 DLARATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDETSCPV 98 (153)
Q Consensus 19 ~~~~~~~~~~C~~~~~~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~d~C~~~~CPl 98 (153)
....++++.+|..+..+.++|+.|+++|+|+.||++++|++.+...+++..|++.+.+.|+||++..+..|+|+.++||+
T Consensus 20 ~i~~a~~~~yCd~~d~~~VkV~~Vni~PnP~a~Ge~aTf~i~~ntg~tIs~Gk~VIeV~y~gi~ihsethDLCdetsCPV 99 (153)
T KOG4680|consen 20 PINGATPVHYCDINDEYEVKVKEVNISPNPPARGENATFSISGNTGETISEGKYVIEVSYGGIRIHSETHDLCDETSCPV 99 (153)
T ss_pred cccCCCcchhhhhcccceEEEEEEecCCCCCCCCCccEEEEecccccEeeCCeEEEEEEEeeEEEeeccccccccccCCc
Confidence 34568999999998777999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCCeeEEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEEeecccccCC
Q 031744 99 STGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGFASSVADS 153 (153)
Q Consensus 99 ~~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i~~~~~~~~~ 153 (153)
++|.|....++.+|.+.|+|+|.++++++|.+|++ ++|++|.++|..-..++++
T Consensus 100 epG~f~~~hsq~LPg~tPPG~Y~lkm~~~d~~~~~-LTCisfsf~i~~g~~v~~~ 153 (153)
T KOG4680|consen 100 EPGDFLVAHSQVLPGYTPPGSYVLKMTAYDAKGKE-LTCISFSFDIGFGSSVADQ 153 (153)
T ss_pred CcCceeeeeeEeccCcCCCceEEEEEEeecCCCCE-EEEEEEEEEeeccceeccC
Confidence 99999999999999999999999999999999999 9999999999988877764
No 2
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
Probab=99.97 E-value=1.2e-30 Score=185.45 Aligned_cols=116 Identities=41% Similarity=0.731 Sum_probs=108.8
Q ss_pred ceecCcCCCccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCc-EEEEEEEEceEEEcccCcCCCCCC-----CCCCC
Q 031744 26 VKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGG-KLVIDVSYFGWHIHSETHDLCDET-----SCPVS 99 (153)
Q Consensus 26 ~~~C~~~~~~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~~~~~~~d~C~~~-----~CPl~ 99 (153)
|++|+++.++.++|++|+++|||++||++++|++.|++++++++| ++++.+++|+++++....|+|+.. +||++
T Consensus 1 ~~~C~~~~~~~~~i~~V~isP~p~~~G~~~ti~~~~~~~~~v~~g~~~~v~~~~~~i~~~~~~~DlC~~~~~~g~~CPi~ 80 (122)
T cd00917 1 FEYCDKGGEDIVKVTSVEISPNPPAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIRLLSETYDLCDETKNVDLSCPIE 80 (122)
T ss_pred CccCCCCCCCeEEEEEEEEECCCcCCCCcEEEEEEEEECcCcCCCCEEEEEEEECCEEeecccCCcccccccCCCcCCcC
Confidence 889988766789999999999999999999999999999999998 899999999999998889999964 89999
Q ss_pred CCeeEEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEE
Q 031744 100 TGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDF 142 (153)
Q Consensus 100 ~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v 142 (153)
+|++.|..+++||+++|+|+|+++|+++|+++++ ++|++|++
T Consensus 81 ~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~-i~Ci~~~~ 122 (122)
T cd00917 81 PGDKFLTKLVDLPGEIPPGKYTVSARAYTKDDEE-ITCLSFSV 122 (122)
T ss_pred CCcEEEEEEeeCCCCCCCceEEEEEEEECCCCCE-EEEEEeeC
Confidence 9998788899999999999999999999999988 99999975
No 3
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=99.96 E-value=1.1e-27 Score=168.85 Aligned_cols=113 Identities=38% Similarity=0.652 Sum_probs=104.4
Q ss_pred ceecCcCCCccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEce--EEEcccCcCCCCCC--CCCCCCC
Q 031744 26 VKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFG--WHIHSETHDLCDET--SCPVSTG 101 (153)
Q Consensus 26 ~~~C~~~~~~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~--~~~~~~~~d~C~~~--~CPl~~G 101 (153)
|++|+++ ..++.+++++||+++||+++++++.|.++++++++++++.+.++| +|++....|+|+.. .||+++|
T Consensus 1 ~~~C~~~---~~~i~~v~v~Pc~~~~g~~~~i~i~f~~~~~~~~~~~~v~~~~~g~~ip~~~~~~d~C~~~~~~CPl~~G 77 (118)
T smart00737 1 FKDCGSN---PGQISSVSISPCPPVRGKTLTISISFTLNEDISKLKVVVHVKIGGIEVPIPGETYDLCKLLGSKCPIEKG 77 (118)
T ss_pred CccCCCC---CceEEEEEecCCCCCCCCEEEEEEEEEEcccceEEEEEEEEEECCEEEeccCCCCCccccCCCCCCCCCC
Confidence 7899874 569999999999999999999999999999999999999999997 57888889999875 8999999
Q ss_pred e-eEEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEE
Q 031744 102 D-FVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDF 142 (153)
Q Consensus 102 ~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v 142 (153)
+ |.|+.+++||+.+|.|+|+++|+++|+++++ ++|+++++
T Consensus 78 ~~~~~~~~~~v~~~~P~~~~~v~~~l~d~~~~~-i~C~~~~~ 118 (118)
T smart00737 78 ETVNYTNSLTVPGIFPPGKYTVKWELTDEDGEE-LACINFTV 118 (118)
T ss_pred eeEEEEEeeEccccCCCeEEEEEEEEEcCCCCE-EEEEEccC
Confidence 7 6899999999999999999999999999888 99999874
No 4
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=99.95 E-value=4.9e-27 Score=168.07 Aligned_cols=121 Identities=32% Similarity=0.603 Sum_probs=105.5
Q ss_pred cccceecCcCCCccEEEEEEEEe-cCCCCCCceEEEEEEE-EeceeecCcEEEEEEEEce-EEEccc----CcCCCCC--
Q 031744 23 ATDVKYCDKNADYDVKVHGVDIS-PYPVARGREATFSISA-TTDKAISGGKLVIDVSYFG-WHIHSE----THDLCDE-- 93 (153)
Q Consensus 23 ~~~~~~C~~~~~~~~~i~~v~i~-Pc~~~~G~~~~i~~~~-~~~~~i~~~~~~v~~~~~~-~~~~~~----~~d~C~~-- 93 (153)
++.|++|+++.+..++|++++++ ||+++||++++|++.| ...++.+...+++.+.++| +++|.. ..|+|+.
T Consensus 1 ~v~~~~C~~~~~~~~~v~~v~i~~pC~~~~g~~~~i~~~f~~~~~~~~~~~~~v~~~~~g~~~ip~~g~~~~~d~C~~~~ 80 (134)
T PF02221_consen 1 AVNFKDCGDGKDSPGTVTSVDISPPCPLKRGQPVTITIDFNTSKKDSDGLKVKVEAKVGGWIPIPFPGLCEYYDLCDNLF 80 (134)
T ss_dssp EEEEEESSSCTSSCECEEEEEEESSEEEETTSEEEEEEEEEECSSBBSSEEEEEEEEETTEEEEEEESSSCEEEEEGTSC
T ss_pred CcEEEECCCcccCCceeEEEEECCCCcccCCCEEEEEEEEEEccccccCCEEEEEEEECCcEEEccccccCccchhhhcc
Confidence 37899998755557899999998 9999999999999999 7777666668899999997 655443 3399994
Q ss_pred ---CCCCCCCCe-eEEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEE
Q 031744 94 ---TSCPVSTGD-FVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSI 144 (153)
Q Consensus 94 ---~~CPl~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i 144 (153)
.+||+++|+ |+|++++.||+.+|.|+|+++|+++|++|++ ++|++|+++|
T Consensus 81 ~~~~~CPi~~G~~~~~~~~~~i~~~~p~~~~~i~~~l~d~~~~~-i~C~~~~v~I 134 (134)
T PF02221_consen 81 GNGLSCPIKAGEYYTYTYTIPIPKIYPPGKYTIQWKLTDQDGEE-IACFEFPVKI 134 (134)
T ss_dssp CSSTTSTBTTTEEEEEEEEEEESTTSSSEEEEEEEEEEETTTEE-EEEEEEEEEE
T ss_pred cccccCccCCCcEEEEEEEEEcccceeeEEEEEEEEEEeCCCCE-EEEEEEEeEC
Confidence 499999997 5999999999999999999999999999888 9999999987
No 5
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=99.94 E-value=6.6e-27 Score=165.68 Aligned_cols=117 Identities=20% Similarity=0.313 Sum_probs=103.5
Q ss_pred ceecCcCCCccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEceE--EEcccCcCCCCCCCCCCCCCe-
Q 031744 26 VKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGW--HIHSETHDLCDETSCPVSTGD- 102 (153)
Q Consensus 26 ~~~C~~~~~~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~--~~~~~~~d~C~~~~CPl~~G~- 102 (153)
|++|+++....++|.+|+-.||.++||+++++++.|+++++.++.++++.+.++|+ |+|..+.|+|+.+.||+.+|+
T Consensus 1 f~~Cg~~~~~~V~V~~C~~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~l~CPl~~G~~ 80 (120)
T cd00918 1 FKDCGKGEIKSLEVDGCSGDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKYVKCPIKKGQH 80 (120)
T ss_pred CeeCCCCCcCEEEeCCCCCCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCcccEeCCCcCCcE
Confidence 68998765456777888888889999999999999999999888888999999996 555557899998899999996
Q ss_pred eEEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEE
Q 031744 103 FVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSI 144 (153)
Q Consensus 103 ~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i 144 (153)
|+|+++++|++.||..+++|+|+|.|++| . ++|++++.+|
T Consensus 81 ~~y~~~~~V~~~~P~v~~~V~~~L~d~~g-~-~~Cf~~~~~~ 120 (120)
T cd00918 81 YDIKYTWNVPAILPKIKAVVKAVLIGDHG-V-LACGIVNGEV 120 (120)
T ss_pred EEEEEeeeccccCCCeEEEEEEEEEcCCC-c-EEEEEEcCcC
Confidence 89999999999999999999999999888 6 8999998764
No 6
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=99.94 E-value=2.1e-26 Score=163.92 Aligned_cols=116 Identities=22% Similarity=0.363 Sum_probs=102.2
Q ss_pred ceecCcCC--CccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEc--ccCcCCCCC--CCCCCC
Q 031744 26 VKYCDKNA--DYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHIH--SETHDLCDE--TSCPVS 99 (153)
Q Consensus 26 ~~~C~~~~--~~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~--~~~~d~C~~--~~CPl~ 99 (153)
|++|+++. ...+.|++|+-.||.++||+++++++.|++++++++.++++.+.++|+++| ....|+|++ .+||++
T Consensus 1 ~~~Cg~~~~~~~~V~i~~C~~~PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~ 80 (123)
T cd00916 1 FRDCGSSRPTPSEVRISGCATLPCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLS 80 (123)
T ss_pred CccCCCCCCceeEEEECCCCCCCCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCc
Confidence 78998763 235777888888899999999999999999999988888999999997544 447899987 799999
Q ss_pred CCe-eEEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEE
Q 031744 100 TGD-FVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDF 142 (153)
Q Consensus 100 ~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v 142 (153)
+|+ |+|+++++|++.||.++|+++|+|+|++++. ++||++++
T Consensus 81 ~G~~~~y~~~~~v~~~~P~i~~~v~~~L~d~~~~~-~~Cf~~~~ 123 (123)
T cd00916 81 AGEDVTYTLSLPVLAPYPGISVTVEWELTDDDGQV-LTCFQIPA 123 (123)
T ss_pred CCcEEEEEEeeeccccCCCeEEEEEEEEEcCCCCE-EEEEEeeC
Confidence 996 8999999999999999999999999998888 99999975
No 7
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=99.93 E-value=1.7e-24 Score=154.61 Aligned_cols=112 Identities=21% Similarity=0.398 Sum_probs=99.0
Q ss_pred ceecCcCCCccEEEEEEEEecC-----CCCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEccc--CcCCCCCC----
Q 031744 26 VKYCDKNADYDVKVHGVDISPY-----PVARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSE--THDLCDET---- 94 (153)
Q Consensus 26 ~~~C~~~~~~~~~i~~v~i~Pc-----~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~--~~d~C~~~---- 94 (153)
|++|+++. ..+.+|+++|| +++||++++++++|+++++++++++++.++++|+++|.. ..|+|+..
T Consensus 1 ~~~C~~~~---~~i~~V~v~pc~~~pC~~~~g~~~~i~~~f~~~~~~~~~~~~v~~~~~gi~~p~~~~~~d~C~~~~~~~ 77 (127)
T cd00912 1 LVDCSDNS---ANIKEVLLSPCDPLPCPDHRGGNYNLSVTGTLREDIKSLYVDLALMSQGIKVLNPDNSYDFCEAGLPKP 77 (127)
T ss_pred CcccCCCC---CceeEEEeCCCCCCCCcccCCCeEEEEEEEEECccccEEEEEEEEEECCEEeccCCCCCCcccccCccc
Confidence 78998763 35667777776 999999999999999999999999999999999866654 68999864
Q ss_pred -CCCCCCC-eeEEEEEEEeCC-CCCCeEEEEEEEEEeCCCceEEEEEEEE
Q 031744 95 -SCPVSTG-DFVVAHSQVLPG-FTPPGTYSLKMKMYDATKKQVLTCITFD 141 (153)
Q Consensus 95 -~CPl~~G-~~~~~~~~~ip~-~~P~g~y~v~~~l~d~~~~~~i~C~~~~ 141 (153)
.||+++| +|+|+.+++||+ .+|++.|+++|++.|++|++ ++|++++
T Consensus 78 ~~CPl~~G~~~~~~~~~~v~~~~~P~~~~~v~~~l~~~~~~~-v~C~~~~ 126 (127)
T cd00912 78 SFCPLRKGQQYSYAKTVNVPEFTIPTIEYQVVLEDVTDKGEV-LACAQAT 126 (127)
T ss_pred ccCCcCCCCEEEEEEEEecCcccCCCeeEEEEEEEEcCCCCE-EEEEecc
Confidence 8999999 699999999997 89999999999999998888 9999986
No 8
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=99.93 E-value=1.6e-24 Score=155.97 Aligned_cols=126 Identities=21% Similarity=0.360 Sum_probs=109.6
Q ss_pred hcccccceecCcCCC--ccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEce-E--EEcccCcCCCCC-
Q 031744 20 LARATDVKYCDKNAD--YDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFG-W--HIHSETHDLCDE- 93 (153)
Q Consensus 20 ~~~~~~~~~C~~~~~--~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~-~--~~~~~~~d~C~~- 93 (153)
.+.++.|++|++..+ ..++|.+|.-+||.++||++.+|++.|..+++.+..+..+....+| + |+|....|+|..
T Consensus 21 q~~~t~~k~C~ss~g~~~~V~i~~C~t~pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~ 100 (158)
T KOG4063|consen 21 QAISTGVKQCGSSDGTPLEVKIDGCPTTPCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCG 100 (158)
T ss_pred cccCcccccccCCCCcceEEEecCCCCCceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccc
Confidence 455899999998543 3688889999999999999999999999999988887666666655 4 677777888875
Q ss_pred -----CCCCCCCCe-eEEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEEee
Q 031744 94 -----TSCPVSTGD-FVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGF 146 (153)
Q Consensus 94 -----~~CPl~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i~~ 146 (153)
..||+.+|+ |+|..+++|-..||.+...++|+|.|++|+. ..||.++++|++
T Consensus 101 ~l~~gv~CPl~age~ytY~~slpI~~~yP~v~v~iew~L~D~d~~~-~~Cf~ipakIk~ 158 (158)
T KOG4063|consen 101 NLLHGVYCPLSAGEDYTYLNSLPITENYPEVSVIIEWQLQDQDNEK-AVCFEIPAKIKK 158 (158)
T ss_pred cccccccCcccCCCceEEEEEeeccccCCceeEEEEEEEecCCCCe-EEEEEEEeeecC
Confidence 389999997 9999999999999999999999999999998 999999999974
No 9
>cd00915 MD-1_MD-2 MD-1 and MD-2 are cofactors required for LPS signaling through cell surface receptors. MD-2 and its binding partner, Toll-like receptor 4 (TLR4), are essential for the innate immune responses of mammalian cells to bacterial lipopolysaccharide (LPS); MD-2 directly binds the lipid A moiety of LPS. The TLR4-like receptor, RP105, which mediates LPS-induced lymphocyte proliferation, interacts with MD-1; MD-1 enhances RP105-mediated LPS-induced growth of B cells. These proteins belong to the ML domain family.
Probab=99.86 E-value=8.1e-21 Score=135.53 Aligned_cols=113 Identities=14% Similarity=0.271 Sum_probs=98.3
Q ss_pred cccceecCcCCCccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEcccCcCCCCC-----CCCC
Q 031744 23 ATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDE-----TSCP 97 (153)
Q Consensus 23 ~~~~~~C~~~~~~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~d~C~~-----~~CP 97 (153)
.+.|+.|+. ++..++++.||.++||++++|++.|++++++++.++++.+..+|+++|.....+|+. +.||
T Consensus 10 ~~~y~~cd~-----~~~~~~~~~pC~l~rg~n~~I~~~f~~~~d~~~L~~~v~~~~~g~~lP~~~e~~C~~g~~~~s~CP 84 (130)
T cd00915 10 EFSYSSCDP-----MQDFSFSAEPCSTLKGTNGFIRIKFILRRDIKELYFNLSLNVNGIEVLTRSEIICHGYLDKYSFCG 84 (130)
T ss_pred EEEeeeCCc-----hheeEeecccccceeCCcEEEEEEEEECcccceeEEEEEEEECCccCCCCCcccccCCCcccccCC
Confidence 367899965 345799999999999999999999999999999999999989998777322349996 5899
Q ss_pred CCCCe-eEEE--EEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEE
Q 031744 98 VSTGD-FVVA--HSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDF 142 (153)
Q Consensus 98 l~~G~-~~~~--~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v 142 (153)
+++|+ |+|+ +++++.+ ||.++|+++|+|.|++++. ++|+++.+
T Consensus 85 ~~kGet~~Y~~p~slpi~~-yP~~~y~V~weL~d~~~~~-l~Cf~~ti 130 (130)
T cd00915 85 ALKGETVYYVGPFSFKGIL-IPQGQYRCVAELIVENRET-VACANFTI 130 (130)
T ss_pred ccCCceEEEeeeecccccc-cCCccEEEEEEEECCCCCE-EEEEEEEC
Confidence 99996 8999 8899989 9999999999999998888 99999853
No 10
>cd00258 GM2-AP GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides. GM2A is an essential cofactor for beta-hexosaminidase A (Hex A) in the enzymatic hydrolysis of GM2 ganglioside to GM3. Mutation of the gene results in the AB variant of Tay-Sachs disease. GM2-AP and similar proteins belong to the ML domain family.
Probab=99.84 E-value=1.3e-19 Score=132.83 Aligned_cols=121 Identities=26% Similarity=0.481 Sum_probs=99.7
Q ss_pred cccceecCcCCCccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCc-EEEEEEEEc--e-E-EEc------ccC-cCC
Q 031744 23 ATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGG-KLVIDVSYF--G-W-HIH------SET-HDL 90 (153)
Q Consensus 23 ~~~~~~C~~~~~~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~--~-~-~~~------~~~-~d~ 90 (153)
...|++|+++. +.+.|++++++|+|+.+++++++++++++++++.++ ++.+.+... | | .+| ..+ .|.
T Consensus 2 ~fsW~nCg~~~-dp~~i~sl~l~PdPi~ipg~~tvs~~~~~~~~lsSp~~~~l~v~k~v~g~Wi~iPC~~~~GSCty~d~ 80 (162)
T cd00258 2 GFSWSNCDGES-LPAVIKSLTVNPDPINIPGDLTVSTVGSTSVPLSSPLKVILTLEKEVAGLWMKIPCLDNIGSCTYDNA 80 (162)
T ss_pred CcccccCCCCC-CceEEeeeEEcCCCcccCCcEEEEEEEEEeeEcCCCcEEEEEEEeecccEEEEcccccccCcccccch
Confidence 36799999854 489999999999999999999999999999999998 787777653 2 2 322 233 388
Q ss_pred CCCC---------------------CCCCCCCeeEEEEE-EEe-----CCCCCCeEEEEEEEEEeCCCceEEEEEEEEEE
Q 031744 91 CDET---------------------SCPVSTGDFVVAHS-QVL-----PGFTPPGTYSLKMKMYDATKKQVLTCITFDFS 143 (153)
Q Consensus 91 C~~~---------------------~CPl~~G~~~~~~~-~~i-----p~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~ 143 (153)
|+.+ +||+++|+|+++.+ ++| |.++++|+|++++.+ +++|++ ++|+++.++
T Consensus 81 C~~l~~~~~~~~~Cp~~l~~~g~pC~CP~~~G~y~lp~s~f~lP~~~LPs~l~~G~Y~i~~~l-~~~g~~-l~C~~~~~s 158 (162)
T cd00258 81 CDLLDTLIPPGQQCPEPLRTYGLPCHCPFKEGVYSLPDSTFTLPNVDLPSWLTNGNYRITGIL-MADGKE-LGCGKFTFS 158 (162)
T ss_pred hhchhcccCCCCCCCchhhccCCccCCCCCCcceEccceeeecccccCCCccCCCcEEEEEEE-CCCCCE-EEEEEEEEE
Confidence 8853 69999999987443 356 888999999999998 788899 999999999
Q ss_pred Eee
Q 031744 144 IGF 146 (153)
Q Consensus 144 i~~ 146 (153)
+..
T Consensus 159 L~~ 161 (162)
T cd00258 159 LES 161 (162)
T ss_pred Eec
Confidence 874
No 11
>PF14558 TRP_N: ML-like domain
Probab=99.08 E-value=3.6e-09 Score=76.88 Aligned_cols=117 Identities=24% Similarity=0.438 Sum_probs=82.2
Q ss_pred cccceecCcCCCccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEcccCcCCCCC---CCCCCC
Q 031744 23 ATDVKYCDKNADYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDE---TSCPVS 99 (153)
Q Consensus 23 ~~~~~~C~~~~~~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~d~C~~---~~CPl~ 99 (153)
...|.+|.+++....+..+++..|. .+++.+++.|+.+.+-..-++++++...|........|+|+. ..||+.
T Consensus 4 t~~f~~Cl~~s~~~~~~Fdv~~~~~----n~tl~~~v~G~s~~~~~~vtl~~~v~ayg~~~~~~~~d~C~~~~~~lCPl~ 79 (141)
T PF14558_consen 4 TSSFSNCLDNSYFTASRFDVTYDPD----NRTLVFDVYGNSSISNKYVTLFISVNAYGYTPYNETFDPCDSNVPGLCPLP 79 (141)
T ss_pred eCChhHcCCccccceEEEeEEEcCC----CCEEEEEEEEEeccCCcEEEEEEEEEeeccccccccCCcccCCCCcccccc
Confidence 4689999988655556666666674 568999999987753221245667766777666888999995 379999
Q ss_pred CCeeEEEEEEEe-C----CCCC-------CeEEEEEEEEEeC-CCceEEEEEEEEEEE
Q 031744 100 TGDFVVAHSQVL-P----GFTP-------PGTYSLKMKMYDA-TKKQVLTCITFDFSI 144 (153)
Q Consensus 100 ~G~~~~~~~~~i-p----~~~P-------~g~y~v~~~l~d~-~~~~~i~C~~~~v~i 144 (153)
+|.+....+..+ | ..+| ...-++++++.+. ++++ ++|++..++=
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~ip~iay~~pdl~a~~~v~~~~~~~~~~-iaCv~a~ltn 136 (141)
T PF14558_consen 80 PGFFAIASSQIIVPPSFTSQIPSIAYAFPDLDATVRVILGDTDTGTQ-IACVQATLTN 136 (141)
T ss_pred ccccccccccccCCHHHhhcCCceeEEcCCceEEEEEEEccCCCCCE-EEEEEEEEEC
Confidence 998655444444 3 2344 4444568888888 5667 9999998863
No 12
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=97.28 E-value=0.012 Score=42.28 Aligned_cols=93 Identities=22% Similarity=0.346 Sum_probs=58.4
Q ss_pred CCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEcccCcCCCCCC-----CCCCCCC--eeEEEEEEEeCCCCCCeEEE
Q 031744 49 VARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDET-----SCPVSTG--DFVVAHSQVLPGFTPPGTYS 121 (153)
Q Consensus 49 ~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~d~C~~~-----~CPl~~G--~~~~~~~~~ip~~~P~g~y~ 121 (153)
.+||+++.+++....+..+.+-.+.+.-.+.+-. -.....-|..- .=.+..| .|.++..+.||..+|+|.|.
T Consensus 32 ~~~G~~ihfe~~i~d~~~i~si~VeIH~nfd~H~-h~~~~~~~~~~~~~~~~~~~~~g~~~~~~h~~i~IPa~a~~G~YH 110 (132)
T PF15418_consen 32 ATRGDDIHFEADISDNSAIKSIKVEIHNNFDHHT-HSTEAGECEKPWVFEQDYDIYGGKKNYDFHEHIDIPADAPAGDYH 110 (132)
T ss_pred EecCCcEEEEEEEEcccceeEEEEEEecCcCccc-ccccccccccCcEEEEEEcccCCcccEeEEEeeeCCCCCCCcceE
Confidence 8899999999988887766443333321111110 00001112210 0023344 58999999999999999999
Q ss_pred EEEEEEeCCCceEEEEEEEEEEE
Q 031744 122 LKMKMYDATKKQVLTCITFDFSI 144 (153)
Q Consensus 122 v~~~l~d~~~~~~i~C~~~~v~i 144 (153)
+.++++|+.|.+ .=....++|
T Consensus 111 ~~i~VtD~~Gn~--~~~~~~i~I 131 (132)
T PF15418_consen 111 FMITVTDAAGNQ--TEEERSIKI 131 (132)
T ss_pred EEEEEEECCCCE--EEEEEEEEE
Confidence 999999999987 335555544
No 13
>smart00697 DM8 Repeats found in several Drosophila proteins.
Probab=96.68 E-value=0.0036 Score=41.41 Aligned_cols=36 Identities=28% Similarity=0.791 Sum_probs=28.5
Q ss_pred CCCCCCCeeEE---EEE-EEeCCCCCCeEEEEEEEEEeCC
Q 031744 95 SCPVSTGDFVV---AHS-QVLPGFTPPGTYSLKMKMYDAT 130 (153)
Q Consensus 95 ~CPl~~G~~~~---~~~-~~ip~~~P~g~y~v~~~l~d~~ 130 (153)
.||+.+|.|.+ ..+ ..+|..+|.|.|.+++++...+
T Consensus 41 ~CP~~~g~y~~~n~~l~~~~~p~~lP~G~y~~~~~~~~~~ 80 (93)
T smart00697 41 TCPLPKGHYYLRNFRLDENLLPSFLPDGDYRLNLTFFFGK 80 (93)
T ss_pred CCCCcCCeEEEEeeEeCcccCCccCCCeeEEEEEEEEcCc
Confidence 79999998733 332 3578899999999999988643
No 14
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=95.66 E-value=0.21 Score=34.92 Aligned_cols=89 Identities=16% Similarity=0.266 Sum_probs=53.5
Q ss_pred cEEEEEEEEec-----C-CCCCCceEEEEEEEEeceeecCcEEEEEEEE-ceEEEcccCcCCCCCCCCCC-CCCeeEEEE
Q 031744 36 DVKVHGVDISP-----Y-PVARGREATFSISATTDKAISGGKLVIDVSY-FGWHIHSETHDLCDETSCPV-STGDFVVAH 107 (153)
Q Consensus 36 ~~~i~~v~i~P-----c-~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~-~~~~~~~~~~d~C~~~~CPl-~~G~~~~~~ 107 (153)
.++|+++.+.. + .+..|+++.+++...+.+++....+.+.+.- .|..+...+. ......-+. ..|.+++++
T Consensus 12 ~~~I~~v~i~~~~g~~~~~~~~ge~~~i~i~~~~~~~i~~~~~~~~i~~~~g~~v~~~~t-~~~~~~~~~~~~g~~~~~~ 90 (142)
T PF14524_consen 12 EARITSVRILDSDGEPTSSFESGEPIRIRIDYEVNEDIDDPVFGFAIRDSDGQRVFGTNT-YDSGFPIPLSEGGTYEVTF 90 (142)
T ss_dssp SEEEEEEEEEETTEES-SSEETTSEEEEEEEEEESS-EEEEEEEEEEEETT--EEEEEEH-HHHT--EEE-TT-EEEEEE
T ss_pred CEEEEEEEEEeCCCCEeeEEeCCCEEEEEEEEEECCCCCccEEEEEEEcCCCCEEEEECc-cccCccccccCCCEEEEEE
Confidence 58888888854 2 3778999999999999988876544444432 2444444222 111111122 267787777
Q ss_pred EEEeCCCCCCeEEEEEEEEE
Q 031744 108 SQVLPGFTPPGTYSLKMKMY 127 (153)
Q Consensus 108 ~~~ip~~~P~g~y~v~~~l~ 127 (153)
+++.+ +.+|.|.+.+.+.
T Consensus 91 ~i~~~--L~~G~Y~i~v~l~ 108 (142)
T PF14524_consen 91 TIPKP--LNPGEYSISVGLG 108 (142)
T ss_dssp EEE----B-SEEEEEEEEEE
T ss_pred EEcCc--cCCCeEEEEEEEE
Confidence 77666 7789999999994
No 15
>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them. The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....
Probab=95.20 E-value=0.27 Score=37.81 Aligned_cols=95 Identities=21% Similarity=0.315 Sum_probs=58.3
Q ss_pred CCCCceEEEEEEEEeceeecCc-EEEEEEEEceEEEcccCcCCCCCCCCCCCCCeeEEEEEE-EeC-CCCCCeEEEEEEE
Q 031744 49 VARGREATFSISATTDKAISGG-KLVIDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQ-VLP-GFTPPGTYSLKMK 125 (153)
Q Consensus 49 ~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G~~~~~~~~-~ip-~~~P~g~y~v~~~ 125 (153)
++-|....+.+.|.+.+++-+| +..-.++.+|+++-....-+ + ...|= ...|++++.- ..| .++-.|+|+++-+
T Consensus 103 IKEGs~Y~l~i~F~V~~~ivsGL~Y~q~Vkr~Gi~Vdk~~~mi-G-sy~P~-~e~y~~~~p~eeaPsG~laRG~Y~aks~ 179 (200)
T PF02115_consen 103 IKEGSKYRLKITFKVQHEIVSGLKYVQTVKRKGIPVDKREEMI-G-SYAPQ-TEPYEKTFPEEEAPSGMLARGSYTAKSK 179 (200)
T ss_dssp EETT-EEEEEEEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-E-EE--E-SSEEEEEEEEEE--BSTTT-EEEEEEEE
T ss_pred ccCCCEEEEEEEEEECCccccCcEEEEEEEECCEeEcccceee-e-ccCCC-CcceEEeCcCccCCCceeEeeeeeEEEE
Confidence 6679999999999999986565 66666777888764433211 1 11232 2235554432 234 4556689999999
Q ss_pred EEeCCCceEEEEEEEEEEEeec
Q 031744 126 MYDATKKQVLTCITFDFSIGFA 147 (153)
Q Consensus 126 l~d~~~~~~i~C~~~~v~i~~~ 147 (153)
++|+++.. ..=++-.+.|+++
T Consensus 180 f~DdD~~~-~l~~~w~feI~Kd 200 (200)
T PF02115_consen 180 FVDDDKNV-HLEWEWSFEIKKD 200 (200)
T ss_dssp EEETTSSE-CEEEEEEEEEESS
T ss_pred EEeCCCcE-EEEEEEEEEEecC
Confidence 99988875 5667777777763
No 16
>smart00675 DM11 Domains in hypothetical proteins in Drosophila including 2 in CG15241 and CG9329.
Probab=95.14 E-value=0.72 Score=34.38 Aligned_cols=106 Identities=13% Similarity=0.194 Sum_probs=59.7
Q ss_pred cccceecCcCCC------ccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCc-EEE--EEEEE---ceE-E--EcccC
Q 031744 23 ATDVKYCDKNAD------YDVKVHGVDISPYPVARGREATFSISATTDKAISGG-KLV--IDVSY---FGW-H--IHSET 87 (153)
Q Consensus 23 ~~~~~~C~~~~~------~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~-~~~--v~~~~---~~~-~--~~~~~ 87 (153)
.-.|++|.++++ ..+.+.+++++.. ++.+.++-..+..-+++-+ .+. +.+.. |-| | +-...
T Consensus 10 ~~ifs~C~n~~pg~~~i~~~~D~S~l~~~~d----~~~i~vsGn~t~~wdi~P~DrI~~~~~~~~~eRG~W~PTv~s~~~ 85 (164)
T smart00675 10 PDLYSPCTDAPPGNIGLREAFDISNLVVDMD----PDGLHISGNITVIWDVQPTDRISARVSVMHFERGTWQPTVFNMAT 85 (164)
T ss_pred ccccccCCCCCCCccchhhccchhheEEEEc----CCeEEEeeeEEEEEecCCCCeEEEEEEEEEecCCeeeeeEEeeec
Confidence 457899987642 2356667776652 3444444444445566333 443 43333 334 3 33346
Q ss_pred cCCCCCC-----------------------CCCCCCCe-e---EEEEEEEeCC---CCCCeEEEE--EEEEEeCCCc
Q 031744 88 HDLCDET-----------------------SCPVSTGD-F---VVAHSQVLPG---FTPPGTYSL--KMKMYDATKK 132 (153)
Q Consensus 88 ~d~C~~~-----------------------~CPl~~G~-~---~~~~~~~ip~---~~P~g~y~v--~~~l~d~~~~ 132 (153)
.|.|+.+ .||..+|+ + .|...+.+.. ..-.|+|.+ +++..|+.|.
T Consensus 86 ~dFC~~m~d~~q~WY~~wtk~i~N~~evk~kC~~~~Gtv~~~e~~~~~l~~~n~~~p~~~Gr~K~v~~~~AfD~~~~ 162 (164)
T smart00675 86 PDFCKSMFDKNQYWYKYWTKYISNKEEIKEKCLTTKGTVLVYEPFLLKLKLSNVNGPNLRGRYKAVVTFEAFDEKNV 162 (164)
T ss_pred cChhHHhcCCCcchHHHHHHhcccHHHHHhcCCCCCCeEEEecceeEEEEEeccCCCCcCCcEEEEEEEEeecccCc
Confidence 7999852 69999996 4 4555555532 223576665 5556666553
No 17
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.42 E-value=0.32 Score=31.16 Aligned_cols=72 Identities=18% Similarity=0.440 Sum_probs=38.6
Q ss_pred CCCceEEEEEEEEecee--ecCcEEEEEEEEceEEEcccCcCCCCCCCCCCCCCe-eEEEEEEEeCCCCCCeEEEEEEEE
Q 031744 50 ARGREATFSISATTDKA--ISGGKLVIDVSYFGWHIHSETHDLCDETSCPVSTGD-FVVAHSQVLPGFTPPGTYSLKMKM 126 (153)
Q Consensus 50 ~~G~~~~i~~~~~~~~~--i~~~~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G~-~~~~~~~~ip~~~P~g~y~v~~~l 126 (153)
.+|+.++++++...... +.+..+.+.+ =.||...... . ... .+.+|+ -++++.+.+|...++|.|.+.+++
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-P~GW~~~~~~-~---~~~-~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~a 75 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSL-PEGWTVSASP-A---SVP-SLPPGESVTVTFTVTVPADAAPGTYTVTVTA 75 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE---TTSE---EE-E---EE---B-TTSEEEEEEEEEE-TT--SEEEEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeC-CCCccccCCc-c---ccc-cCCCCCEEEEEEEEECCCCCCCceEEEEEEE
Confidence 46888888887765542 2222333332 1345411110 0 112 579997 599999999999999999999987
Q ss_pred E
Q 031744 127 Y 127 (153)
Q Consensus 127 ~ 127 (153)
.
T Consensus 76 ~ 76 (78)
T PF10633_consen 76 R 76 (78)
T ss_dssp E
T ss_pred E
Confidence 5
No 18
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=94.32 E-value=0.87 Score=29.74 Aligned_cols=82 Identities=17% Similarity=0.402 Sum_probs=51.0
Q ss_pred cEEEEEEEEecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEcccCcCCCCCCCCCCCCCe-eEEEEEEEeCCC
Q 031744 36 DVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDETSCPVSTGD-FVVAHSQVLPGF 114 (153)
Q Consensus 36 ~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G~-~~~~~~~~ip~~ 114 (153)
++.| .+...|..+..|++++++++..-........+.+.+..++-..-. ... .. |.+|+ .++++++..+
T Consensus 3 DL~v-~~~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~--~~i-~~----L~~g~~~~v~~~~~~~-- 72 (101)
T PF07705_consen 3 DLTV-SITVSPSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSVST--VTI-PS----LAPGESETVTFTWTPP-- 72 (101)
T ss_dssp -EEE--EEEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEE--EEE-SE----B-TTEEEEEEEEEE-S--
T ss_pred CEEE-EEeeCCCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECCceecc--EEE-CC----cCCCcEEEEEEEEEeC--
Confidence 4667 788889999999999999987666554445567777666643311 111 22 68886 5777777766
Q ss_pred CCCeEEEEEEEEEe
Q 031744 115 TPPGTYSLKMKMYD 128 (153)
Q Consensus 115 ~P~g~y~v~~~l~d 128 (153)
-+|.|++++.+-.
T Consensus 73 -~~G~~~i~~~iD~ 85 (101)
T PF07705_consen 73 -SPGSYTIRVVIDP 85 (101)
T ss_dssp -S-CEEEEEEEEST
T ss_pred -CCCeEEEEEEEee
Confidence 4789998887743
No 19
>PF06477 DUF1091: Protein of unknown function (DUF1091); InterPro: IPR010512 This entry contains a number of proteins from Drosophila melanogaster and other insects. Their function is unknown.
Probab=94.28 E-value=0.052 Score=35.07 Aligned_cols=28 Identities=32% Similarity=0.925 Sum_probs=21.7
Q ss_pred CCCCCCCeeEE---EEE-EEeCCCCCCeEEEE
Q 031744 95 SCPVSTGDFVV---AHS-QVLPGFTPPGTYSL 122 (153)
Q Consensus 95 ~CPl~~G~~~~---~~~-~~ip~~~P~g~y~v 122 (153)
.||+++|.|.+ ..+ -.+|...|.|.|.+
T Consensus 50 ~CP~~~g~Y~~~n~~~~~~~~P~~~p~G~y~i 81 (81)
T PF06477_consen 50 TCPFKKGNYYLRNFTIDEKFLPSFLPEGDYRI 81 (81)
T ss_pred CCCCCCCEEEEEEEEECcccCCCcCCCeEEEC
Confidence 69999998744 343 45899999999874
No 20
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=93.51 E-value=0.51 Score=31.72 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=22.1
Q ss_pred EEEEEeCCCCCCeEEEEEEEEEeCCCce
Q 031744 106 AHSQVLPGFTPPGTYSLKMKMYDATKKQ 133 (153)
Q Consensus 106 ~~~~~ip~~~P~g~y~v~~~l~d~~~~~ 133 (153)
.+.+.+|...++|.|+|+|+....||..
T Consensus 60 ~~~~~l~~~l~~G~YtV~wrvvs~DGH~ 87 (97)
T PF04234_consen 60 TLTVPLPPPLPPGTYTVSWRVVSADGHP 87 (97)
T ss_dssp EEEEEESS---SEEEEEEEEEEETTSCE
T ss_pred EEEEECCCCCCCceEEEEEEEEecCCCC
Confidence 5677888889999999999999999886
No 21
>PRK10301 hypothetical protein; Provisional
Probab=92.40 E-value=0.37 Score=34.17 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=23.5
Q ss_pred EEEEEeCCCCCCeEEEEEEEEEeCCCce
Q 031744 106 AHSQVLPGFTPPGTYSLKMKMYDATKKQ 133 (153)
Q Consensus 106 ~~~~~ip~~~P~g~y~v~~~l~d~~~~~ 133 (153)
.+.++++...++|.|+|+|+....||..
T Consensus 87 ~~~v~l~~~L~~G~YtV~Wrvvs~DGH~ 114 (124)
T PRK10301 87 QLIVPLADSLKPGTYTVDWHVVSVDGHK 114 (124)
T ss_pred EEEEECCCCCCCccEEEEEEEEecCCCc
Confidence 3466777778999999999999999875
No 22
>PLN02991 oxidoreductase
Probab=91.62 E-value=0.91 Score=39.98 Aligned_cols=68 Identities=19% Similarity=0.274 Sum_probs=37.6
Q ss_pred ccEEEEEEEEecCC------------------CCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEccc-CcCCCCCCC
Q 031744 35 YDVKVHGVDISPYP------------------VARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSE-THDLCDETS 95 (153)
Q Consensus 35 ~~~~i~~v~i~Pc~------------------~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~-~~d~C~~~~ 95 (153)
+.++|+..+++|.= +.+|.++.|++.=.++ . ...+.+.|+..... ..|.=..+.
T Consensus 31 ~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~----~---~ttiHWHGi~q~~~~~~DGv~~tQ 103 (543)
T PLN02991 31 FEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLD----E---PFLISWSGIRNWRNSYQDGVYGTT 103 (543)
T ss_pred EEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCC----C---CccEEECCcccCCCccccCCCCCC
Confidence 46788888888752 3344444444432111 1 12345555543322 235434468
Q ss_pred CCCCCCe-eEEEEEE
Q 031744 96 CPVSTGD-FVVAHSQ 109 (153)
Q Consensus 96 CPl~~G~-~~~~~~~ 109 (153)
|||.+|+ |+|++.+
T Consensus 104 cpI~PG~sftY~F~~ 118 (543)
T PLN02991 104 CPIPPGKNYTYALQV 118 (543)
T ss_pred CccCCCCcEEEEEEe
Confidence 9999996 7777764
No 23
>PLN02354 copper ion binding / oxidoreductase
Probab=91.40 E-value=0.82 Score=40.31 Aligned_cols=68 Identities=16% Similarity=0.255 Sum_probs=36.4
Q ss_pred ccEEEEEEEEecCC------------------CCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEccc-CcCCCCCCC
Q 031744 35 YDVKVHGVDISPYP------------------VARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSE-THDLCDETS 95 (153)
Q Consensus 35 ~~~~i~~v~i~Pc~------------------~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~-~~d~C~~~~ 95 (153)
+.++|+..+.+|.- +.+|.++.|++.=.+. .+ ..+.+.|+..... ..|.=.++.
T Consensus 30 y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~----~~---ttiHWHGi~q~~~~~~DGv~~TQ 102 (552)
T PLN02354 30 FTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLD----EP---FLLTWSGIQQRKNSWQDGVPGTN 102 (552)
T ss_pred EEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCC----CC---cccccccccCCCCcccCCCcCCc
Confidence 46788888888752 2344444444432221 11 2344445533322 234433378
Q ss_pred CCCCCCe-eEEEEEE
Q 031744 96 CPVSTGD-FVVAHSQ 109 (153)
Q Consensus 96 CPl~~G~-~~~~~~~ 109 (153)
||+.+|+ |+|+++.
T Consensus 103 cpI~PG~sf~Y~F~~ 117 (552)
T PLN02354 103 CPIPPGTNFTYHFQP 117 (552)
T ss_pred CCCCCCCcEEEEEEe
Confidence 9999996 7777763
No 24
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=91.29 E-value=1.4 Score=39.30 Aligned_cols=74 Identities=20% Similarity=0.341 Sum_probs=36.8
Q ss_pred CccEEEEEEEEecCC-CCCCceEEEEEEEEece---eecCc-EEEEEE----------EEceEEEccc-CcCCCCCCCCC
Q 031744 34 DYDVKVHGVDISPYP-VARGREATFSISATTDK---AISGG-KLVIDV----------SYFGWHIHSE-THDLCDETSCP 97 (153)
Q Consensus 34 ~~~~~i~~v~i~Pc~-~~~G~~~~i~~~~~~~~---~i~~~-~~~v~~----------~~~~~~~~~~-~~d~C~~~~CP 97 (153)
.+.++|+..+++|.- ..+-+ .+.+.|.... ++..| ++.+.+ .+.|+..+.. ..|.=..+.||
T Consensus 29 ~y~~~v~~~~~~pdg~~~~~~--vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQcP 106 (596)
T PLN00044 29 YYDWEVSYVSAAPLGGVKKQE--AIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNCA 106 (596)
T ss_pred EEEEEEEEEEEccCCCceeeE--EEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcCC
Confidence 456889999999852 11111 2222221111 12233 344443 3334322221 23433347899
Q ss_pred CCCCe-eEEEEEE
Q 031744 98 VSTGD-FVVAHSQ 109 (153)
Q Consensus 98 l~~G~-~~~~~~~ 109 (153)
+.+|+ |+|++.+
T Consensus 107 I~PG~sftY~F~~ 119 (596)
T PLN00044 107 IPAGWNWTYQFQV 119 (596)
T ss_pred cCCCCcEEEEEEe
Confidence 99996 7777765
No 25
>KOG3205 consensus Rho GDP-dissociation inhibitor [Signal transduction mechanisms]
Probab=90.10 E-value=6.9 Score=29.82 Aligned_cols=91 Identities=25% Similarity=0.318 Sum_probs=55.8
Q ss_pred CCCCceEEEEEEEEeceeecCc-EEEEEEEEceEEEcccCcCCCCCCCCCCCCCeeEEEEEEEeC-CCCCC-----eEEE
Q 031744 49 VARGREATFSISATTDKAISGG-KLVIDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQVLP-GFTPP-----GTYS 121 (153)
Q Consensus 49 ~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G~~~~~~~~~ip-~~~P~-----g~y~ 121 (153)
++-|+...+.+.|.+.++|-+| ...=.++--|+.+-...+=+=.+ =| ++-.|.| ..| .++|+ |+|.
T Consensus 101 iKEGs~Y~lki~F~Vq~eIvSGLrY~q~v~r~Gv~VDk~~~MlGSy--~P-~~e~ye~----~~p~eeAPsGmlaRG~Ys 173 (200)
T KOG3205|consen 101 IKEGSEYRLKISFRVQREIVSGLRYVQTVYRTGVKVDKTKYMLGSY--GP-QAEPYEF----VTPEEEAPSGMLARGSYS 173 (200)
T ss_pred eecCcEEEEEEEEEEeeheeccceeeeEEeecceEEeehhhhcccC--CC-CCcceee----eCCcccCCccceeeccee
Confidence 5668888899999999999888 45445555666554333211111 11 1222433 223 33554 6999
Q ss_pred EEEEEEeCCCceEEEEEEEEEEEeec
Q 031744 122 LKMKMYDATKKQVLTCITFDFSIGFA 147 (153)
Q Consensus 122 v~~~l~d~~~~~~i~C~~~~v~i~~~ 147 (153)
++-.++|+++.. -.=.+-.+.|.++
T Consensus 174 ~~skF~DDDk~~-hLe~~w~~~I~K~ 198 (200)
T KOG3205|consen 174 AKSKFTDDDKTC-HLEWNWTFDIKKE 198 (200)
T ss_pred eeeEEecCCCce-EEEEEEEEEEeec
Confidence 999999988764 4455666666653
No 26
>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=88.88 E-value=0.65 Score=32.60 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=18.4
Q ss_pred CCCCCCCeeEEEEEEEeCCCCCC--------eEEEEEEEE
Q 031744 95 SCPVSTGDFVVAHSQVLPGFTPP--------GTYSLKMKM 126 (153)
Q Consensus 95 ~CPl~~G~~~~~~~~~ip~~~P~--------g~y~v~~~l 126 (153)
..-+.+|+|+|.+++.+|...|+ +.|.+++.+
T Consensus 87 ~~~l~~G~~~fpF~f~LP~~lP~S~~~~~g~I~Y~l~a~l 126 (149)
T PF00339_consen 87 PNILPPGEYEFPFEFQLPSNLPSSFEGSHGSIRYKLKATL 126 (149)
T ss_dssp -----C-TTEEEEEE---TTS--SEEEE-SEEEEEEEEEE
T ss_pred eecccCCCEEEEEEEECCCCCCceEeccCcCEEEEEEEEE
Confidence 35578999999999999988876 478888888
No 27
>TIGR02186 alph_Pro_TM conserved hypothetical protein. This family consists of predicted transmembrane proteins of about 270 amino acids. Members are found, so far, only among the Alphaproteobacteria and only once in each genome.
Probab=88.29 E-value=2.5 Score=33.86 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=35.5
Q ss_pred EEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEEeec
Q 031744 104 VVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGFA 147 (153)
Q Consensus 104 ~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i~~~ 147 (153)
-|..++.+|...|.|.|++++.+.- +|+. ++=.+.++++++-
T Consensus 181 LFra~i~LPAnvp~G~Y~v~v~L~r-~G~v-v~~~~t~l~V~Kv 222 (261)
T TIGR02186 181 LFRATLRLPANVPNGTHEVRAYLFR-GGVF-IARTELALEIVKT 222 (261)
T ss_pred eEEEeeecCCCCCCceEEEEEEEEe-CCEE-EEEEEeEEEEEEe
Confidence 3567899999999999999999995 6677 8888888888763
No 28
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=88.21 E-value=0.84 Score=27.85 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=18.6
Q ss_pred CCCeEEEEEEEEEeCCCceEEEEEEEEEEE
Q 031744 115 TPPGTYSLKMKMYDATKKQVLTCITFDFSI 144 (153)
Q Consensus 115 ~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i 144 (153)
.|+|+|+++++..|.++..+.....+.+.|
T Consensus 36 L~~G~Y~l~V~a~~~~~~~~~~~~~l~i~I 65 (66)
T PF07495_consen 36 LPPGKYTLEVRAKDNNGKWSSDEKSLTITI 65 (66)
T ss_dssp --SEEEEEEEEEEETTS-B-SS-EEEEEEE
T ss_pred CCCEEEEEEEEEECCCCCcCcccEEEEEEE
Confidence 689999999999998876422235555544
No 29
>PLN02835 oxidoreductase
Probab=87.26 E-value=4.2 Score=35.77 Aligned_cols=34 Identities=15% Similarity=0.377 Sum_probs=20.1
Q ss_pred EEEceEEEcccC-cCCCCCCCCCCCCCe-eEEEEEE
Q 031744 76 VSYFGWHIHSET-HDLCDETSCPVSTGD-FVVAHSQ 109 (153)
Q Consensus 76 ~~~~~~~~~~~~-~d~C~~~~CPl~~G~-~~~~~~~ 109 (153)
+.+.|+..+... .|.=.++.||+.+|+ |+|++..
T Consensus 84 iHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~ 119 (539)
T PLN02835 84 LTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQT 119 (539)
T ss_pred EEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEE
Confidence 445555444322 344333789999996 7776653
No 30
>PF09608 Alph_Pro_TM: Putative transmembrane protein (Alph_Pro_TM); InterPro: IPR019088 This entry consists of predicted transmembrane proteins of about 270 amino acids. They are found predominantly, though not exclusively, in alphaproteobacteria, generally only once in each genome.
Probab=86.40 E-value=3.9 Score=32.24 Aligned_cols=42 Identities=14% Similarity=0.362 Sum_probs=33.8
Q ss_pred EEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEEeec
Q 031744 104 VVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGFA 147 (153)
Q Consensus 104 ~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i~~~ 147 (153)
-|..++.+|...|.|.|++++-+.- +|+. +.=...++++.+-
T Consensus 156 lFra~i~LPanvp~G~Y~v~v~l~r-dG~v-v~~~~~~l~V~Kv 197 (236)
T PF09608_consen 156 LFRARIPLPANVPPGDYTVRVYLFR-DGQV-VASQETPLRVRKV 197 (236)
T ss_pred eEEEEeEcCCCCCcceEEEEEEEEE-CCEE-EEEEeeEEEEEEc
Confidence 4678899999999999999999986 5566 7777777777653
No 31
>PLN02168 copper ion binding / pectinesterase
Probab=84.36 E-value=7.7 Score=34.23 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=38.2
Q ss_pred ccEEEEEEEEecCC------------------CCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEcccC-cCCCCCCC
Q 031744 35 YDVKVHGVDISPYP------------------VARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSET-HDLCDETS 95 (153)
Q Consensus 35 ~~~~i~~v~i~Pc~------------------~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~-~d~C~~~~ 95 (153)
+.++|+..+..|.- +++|.++.|++.=.++ . ...+.+.|+..+... .|.=.++.
T Consensus 29 ~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~----~---~ttiHWHGl~~~~~~~~DGv~gtQ 101 (545)
T PLN02168 29 YQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLT----E---PFLMTWNGLQLRKNSWQDGVRGTN 101 (545)
T ss_pred EEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCC----C---CccEeeCCccCCCCCCcCCCCCCc
Confidence 45778888887752 3345555554432222 1 123455555444332 24432378
Q ss_pred CCCCCCe-eEEEEEE
Q 031744 96 CPVSTGD-FVVAHSQ 109 (153)
Q Consensus 96 CPl~~G~-~~~~~~~ 109 (153)
||+.+|+ |+|++.+
T Consensus 102 cpI~PG~sftY~F~~ 116 (545)
T PLN02168 102 CPILPGTNWTYRFQV 116 (545)
T ss_pred CCCCCCCcEEEEEEe
Confidence 9999996 7777764
No 32
>COG1470 Predicted membrane protein [Function unknown]
Probab=84.25 E-value=21 Score=31.04 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=29.3
Q ss_pred CCCCee-EEEEEEEeCCCCCCeEEEEEEEEEeC
Q 031744 98 VSTGDF-VVAHSQVLPGFTPPGTYSLKMKMYDA 129 (153)
Q Consensus 98 l~~G~~-~~~~~~~ip~~~P~g~y~v~~~l~d~ 129 (153)
+++|++ +.+.++.+|+.+++|.|.++++...+
T Consensus 438 L~pge~~tV~ltI~vP~~a~aGdY~i~i~~ksD 470 (513)
T COG1470 438 LEPGESKTVSLTITVPEDAGAGDYRITITAKSD 470 (513)
T ss_pred cCCCCcceEEEEEEcCCCCCCCcEEEEEEEeec
Confidence 689987 99999999999999999999998875
No 33
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.71 E-value=16 Score=32.56 Aligned_cols=35 Identities=20% Similarity=0.428 Sum_probs=21.0
Q ss_pred EEEEEceEEEccc-CcCCCCC-CCCCCCCCe-eEEEEEE
Q 031744 74 IDVSYFGWHIHSE-THDLCDE-TSCPVSTGD-FVVAHSQ 109 (153)
Q Consensus 74 v~~~~~~~~~~~~-~~d~C~~-~~CPl~~G~-~~~~~~~ 109 (153)
+.+.+.|+.-... -.|+ .. +.||+++|+ |+|.+++
T Consensus 81 ~sihWhGv~q~kn~w~DG-~~~TqCPI~Pg~~~tY~F~v 118 (563)
T KOG1263|consen 81 FSIHWHGVRQRKNPWQDG-VYITQCPIQPGENFTYRFTV 118 (563)
T ss_pred eEEEeccccccCCccccC-CccccCCcCCCCeEEEEEEe
Confidence 3455555532222 2377 55 699999996 7666553
No 34
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=82.22 E-value=5.3 Score=28.53 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=28.1
Q ss_pred EEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEE
Q 031744 106 AHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSI 144 (153)
Q Consensus 106 ~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i 144 (153)
.+.++++..+..|.|++.|++...||.. .=-.+.|++
T Consensus 88 ~l~v~l~~~L~aG~Y~v~WrvvS~DGH~--v~G~~sFsV 124 (127)
T COG2372 88 QLEVPLPQPLKAGVYTVDWRVVSSDGHV--VKGSISFSV 124 (127)
T ss_pred EEEecCcccCCCCcEEEEEEEEecCCcE--eccEEEEEe
Confidence 4677888889999999999999999875 333344443
No 35
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=81.37 E-value=4.5 Score=28.22 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=31.9
Q ss_pred CcCCCCCCCCCCCCCe-eEEEEEEEeCCCCCCeEEEEEEEE
Q 031744 87 THDLCDETSCPVSTGD-FVVAHSQVLPGFTPPGTYSLKMKM 126 (153)
Q Consensus 87 ~~d~C~~~~CPl~~G~-~~~~~~~~ip~~~P~g~y~v~~~l 126 (153)
....|...+||+..|. .+++.++.....+..++..+.+++
T Consensus 15 ~v~pc~~~pC~~~~g~~~~i~~~f~~~~~~~~~~~~v~~~~ 55 (127)
T cd00912 15 LLSPCDPLPCPDHRGGNYNLSVTGTLREDIKSLYVDLALMS 55 (127)
T ss_pred EeCCCCCCCCcccCCCeEEEEEEEEECccccEEEEEEEEEE
Confidence 4578888899999995 788888888887777777776654
No 36
>PLN02792 oxidoreductase
Probab=79.71 E-value=5.6 Score=35.01 Aligned_cols=34 Identities=24% Similarity=0.536 Sum_probs=20.8
Q ss_pred EEEceEEEcccC-cCCCCCCCCCCCCCe-eEEEEEE
Q 031744 76 VSYFGWHIHSET-HDLCDETSCPVSTGD-FVVAHSQ 109 (153)
Q Consensus 76 ~~~~~~~~~~~~-~d~C~~~~CPl~~G~-~~~~~~~ 109 (153)
+.+.|+..+... .|.=..+.||+.+|+ |+|++.+
T Consensus 71 iHWHGl~q~~~~~~DGv~~tqcPI~PG~sftY~F~~ 106 (536)
T PLN02792 71 LSWNGVHMRKNSYQDGVYGTTCPIPPGKNYTYDFQV 106 (536)
T ss_pred EeCCCcccCCCCccCCCCCCcCccCCCCcEEEEEEe
Confidence 445555444432 354344689999996 7776664
No 37
>PLN02191 L-ascorbate oxidase
Probab=79.22 E-value=8.8 Score=34.05 Aligned_cols=16 Identities=25% Similarity=0.694 Sum_probs=12.3
Q ss_pred CCCCCCCCe-eEEEEEE
Q 031744 94 TSCPVSTGD-FVVAHSQ 109 (153)
Q Consensus 94 ~~CPl~~G~-~~~~~~~ 109 (153)
+.||+.+|+ |+|.+.+
T Consensus 99 tq~pI~PG~s~~Y~f~~ 115 (574)
T PLN02191 99 TQCAINPGETFTYKFTV 115 (574)
T ss_pred ccCCcCCCCeEEEEEEC
Confidence 579999996 7776653
No 38
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=78.47 E-value=6.6 Score=25.86 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=16.8
Q ss_pred EEEEEEeCCCCCCeEEEEEEEEEeCCC
Q 031744 105 VAHSQVLPGFTPPGTYSLKMKMYDATK 131 (153)
Q Consensus 105 ~~~~~~ip~~~P~g~y~v~~~l~d~~~ 131 (153)
+..++.||...+.|.|+|++...++++
T Consensus 64 ~~~~~~lp~~~~~G~y~i~~~~~~~~~ 90 (99)
T PF01835_consen 64 FSGSFQLPDDAPLGTYTIRVKTDDDGG 90 (99)
T ss_dssp EEEEEE--SS---EEEEEEEEETTTTC
T ss_pred EEEEEECCCCCCCEeEEEEEEEccCCC
Confidence 455688999999999999998864443
No 39
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
Probab=78.36 E-value=12 Score=26.01 Aligned_cols=78 Identities=22% Similarity=0.187 Sum_probs=41.0
Q ss_pred CCCCceEEEEEEEEeceeecCcEEEEEEEEceE---------EEcc-cCcCCCCCCCCCCCCCe-eEEEEEEEeCCCCCC
Q 031744 49 VARGREATFSISATTDKAISGGKLVIDVSYFGW---------HIHS-ETHDLCDETSCPVSTGD-FVVAHSQVLPGFTPP 117 (153)
Q Consensus 49 ~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~---------~~~~-~~~d~C~~~~CPl~~G~-~~~~~~~~ip~~~P~ 117 (153)
++||+.+.+.+.|.-..+-....+.+.+..|.- .++- ...+.=.. ..=+...+ -+.++++..|...|-
T Consensus 29 VRRGQ~F~i~l~f~r~~~~~~d~l~l~~~~G~~P~~~~gT~~~~~~~~~~~~~~W-~a~v~~~~~~~~tv~V~spa~A~V 107 (118)
T PF00868_consen 29 VRRGQPFTITLRFNRPFDPSKDQLSLEFETGPNPSESKGTKVVFPVSSSLDSSSW-SARVESQDGNSVTVSVTSPANAPV 107 (118)
T ss_dssp EETTSEEEEEEEESSS--TTTEEEEEEEEESSS--TTTTSEEEEEECSSS-TSSS-EEEEEEEETTEEEEEEE--TTS--
T ss_pred EECCCEEEEEEEEcCCcCCCCcEEEEEEEEecccccCCCcEEEEEEccCCCCCCE-EEEEEecCCCEEEEEEECCCCCce
Confidence 789999999998755533334467787877721 1111 01110000 00011111 246778889999999
Q ss_pred eEEEEEEEEE
Q 031744 118 GTYSLKMKMY 127 (153)
Q Consensus 118 g~y~v~~~l~ 127 (153)
|.|.+.++..
T Consensus 108 G~y~l~v~~~ 117 (118)
T PF00868_consen 108 GRYKLSVETK 117 (118)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEe
Confidence 9999988764
No 40
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=78.33 E-value=5.2 Score=27.74 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=27.5
Q ss_pred ecCCCCCCceEEEEEEEEeceeecCcEEEEEEEE
Q 031744 45 SPYPVARGREATFSISATTDKAISGGKLVIDVSY 78 (153)
Q Consensus 45 ~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~ 78 (153)
.+||+++|+..+.+.+.........+++++.+.+
T Consensus 84 ~~CPi~~G~~~~~~~~~~i~~~~p~~~~~i~~~l 117 (134)
T PF02221_consen 84 LSCPIKAGEYYTYTYTIPIPKIYPPGKYTIQWKL 117 (134)
T ss_dssp TTSTBTTTEEEEEEEEEEESTTSSSEEEEEEEEE
T ss_pred ccCccCCCcEEEEEEEEEcccceeeEEEEEEEEE
Confidence 3899999999999999888887877776665543
No 41
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=75.12 E-value=9.8 Score=27.09 Aligned_cols=50 Identities=26% Similarity=0.393 Sum_probs=35.8
Q ss_pred CCCC-CCCe-eEEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEEeec
Q 031744 95 SCPV-STGD-FVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIGFA 147 (153)
Q Consensus 95 ~CPl-~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i~~~ 147 (153)
..|+ .+|+ |.|+-...+ ..|.|.....+.+.+++|+. +-+.--+|.+..+
T Consensus 72 ~qP~L~PGe~F~Y~S~~~l--~tp~G~M~G~y~~~~~~G~~-F~v~Ip~F~L~~P 123 (127)
T PRK05461 72 EQPVLAPGESFEYTSGAVL--ETPSGTMQGHYQMVDEDGER-FEVPIPPFRLAVP 123 (127)
T ss_pred CCceECCCCCeEEeCCCCc--cCCCEEEEEEEEEEeCCCCE-EEEEccCEEcCCC
Confidence 5776 7887 555554444 46899999999999989987 7666666666544
No 42
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=73.41 E-value=8.9 Score=26.18 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=25.5
Q ss_pred cCCCCCCceEEEEEEEEeceeecCcEEEEEEEE
Q 031744 46 PYPVARGREATFSISATTDKAISGGKLVIDVSY 78 (153)
Q Consensus 46 Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~ 78 (153)
.||+++|+.+..+.++.+......+.+++.+.+
T Consensus 71 ~CPl~~G~~~~~~~~~~v~~~~P~~~~~v~~~l 103 (118)
T smart00737 71 KCPIEKGETVNYTNSLTVPGIFPPGKYTVKWEL 103 (118)
T ss_pred CCCCCCCeeEEEEEeeEccccCCCeEEEEEEEE
Confidence 699999999988888878777777766555543
No 43
>PF13002 LDB19: Arrestin_N terminal like; InterPro: IPR024391 This entry represents a predicted Ig-like beta sandwich domain found towards the N terminus of protein LDB19 []. It is also found in other sequences and is related to the arrestin N-terminal fold [].
Probab=72.99 E-value=19 Score=27.58 Aligned_cols=54 Identities=17% Similarity=0.251 Sum_probs=39.6
Q ss_pred CCCCCCCeeEEEEEEEeCCCCCC-----------eEEEEEEEEEeCC-------CceEEEEEEEEEEEeecc
Q 031744 95 SCPVSTGDFVVAHSQVLPGFTPP-----------GTYSLKMKMYDAT-------KKQVLTCITFDFSIGFAS 148 (153)
Q Consensus 95 ~CPl~~G~~~~~~~~~ip~~~P~-----------g~y~v~~~l~d~~-------~~~~i~C~~~~v~i~~~~ 148 (153)
+..+.+|.++|.++.-||..+|. +.|.+.+++...+ ++.....++.++.|.+.=
T Consensus 44 ~t~l~~G~h~fPFS~LiPG~LPaS~~lgs~~l~~I~Yel~A~a~~~~~~~~~~~~~~~~~~~~~pl~V~Rsi 115 (191)
T PF13002_consen 44 PTTLTKGSHAFPFSYLIPGHLPASMDLGSTPLVSIKYELKAEATYKDPRRGSSSSKPRVLKLKRPLPVKRSI 115 (191)
T ss_pred ccccCCCcccCCeeEECCCCCccccccCCCCcEEEEEEEEEEEEEccCccccCCCcceeEEEeeeEEEEEec
Confidence 67789999999999888876653 3688888877721 222157888899988753
No 44
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=72.54 E-value=7.2 Score=27.07 Aligned_cols=24 Identities=33% Similarity=0.760 Sum_probs=15.6
Q ss_pred CCCCCCCCCe-eEEEEEEEeCCCCCCeEE
Q 031744 93 ETSCPVSTGD-FVVAHSQVLPGFTPPGTY 120 (153)
Q Consensus 93 ~~~CPl~~G~-~~~~~~~~ip~~~P~g~y 120 (153)
...||+.+|+ ++|.+. ++. ++|.|
T Consensus 69 ~~~~~i~pG~~~~Y~~~--~~~--~~Gt~ 93 (117)
T PF07732_consen 69 VTQCPIAPGESFTYEFT--ANQ--QAGTY 93 (117)
T ss_dssp TSGSSBSTTEEEEEEEE--ESS--CSEEE
T ss_pred ccceeEEeecceeeeEe--eec--cccce
Confidence 3579999996 555544 444 46654
No 45
>PF03443 Glyco_hydro_61: Glycosyl hydrolase family 61; InterPro: IPR005103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The only known activity within this family is that of endoglucanase (3.2.1.4 from EC) GH61 from CAZY ; PDB: 4EIS_B 2VTC_A 4EIR_B 3EJA_D 3EII_A.
Probab=72.48 E-value=18 Score=28.04 Aligned_cols=39 Identities=21% Similarity=0.422 Sum_probs=26.8
Q ss_pred EEEEEEeCCCCCCeEEEEEEEEEeCC------CceE-EEEEEEEEE
Q 031744 105 VAHSQVLPGFTPPGTYSLKMKMYDAT------KKQV-LTCITFDFS 143 (153)
Q Consensus 105 ~~~~~~ip~~~P~g~y~v~~~l~d~~------~~~~-i~C~~~~v~ 143 (153)
.+.++.||+.+|+|.|-+|.++.-=. +-|- ..|+++.|+
T Consensus 136 ~~~~~~IP~~l~~G~YLlR~E~IaLH~a~~~~gaQfY~~Caqi~Vt 181 (218)
T PF03443_consen 136 GSWTFTIPKNLPPGQYLLRHEIIALHSAGQPGGAQFYPSCAQIKVT 181 (218)
T ss_dssp CEEEEE--TTBBSEEEEEEEEEEE-TTTTSTT--EEEEEEEEEEEE
T ss_pred CceEEEeCCCCCCCCceEEecceeeccCccCCCCEEhhhCEEEEEE
Confidence 36677899999999999999976521 2332 689998876
No 46
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=72.30 E-value=9.2 Score=26.75 Aligned_cols=40 Identities=10% Similarity=0.048 Sum_probs=29.1
Q ss_pred cCCCCCCCCCCCCCe-eEEEEEEEeCCCCCCeEEEEEEEEE
Q 031744 88 HDLCDETSCPVSTGD-FVVAHSQVLPGFTPPGTYSLKMKMY 127 (153)
Q Consensus 88 ~d~C~~~~CPl~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~ 127 (153)
-+.|...+|++..|+ .+++..+.-+...-.++..+++.+.
T Consensus 16 i~~C~~~PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~ 56 (123)
T cd00916 16 ISGCATLPCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILL 56 (123)
T ss_pred ECCCCCCCCEEECCCEEEEEEEEEcCcccceeEEEEEEEEC
Confidence 368998899999996 6888887555555556666666654
No 47
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=71.34 E-value=10 Score=26.59 Aligned_cols=29 Identities=14% Similarity=0.245 Sum_probs=21.2
Q ss_pred cCCCCCCceEEEEEEEEeceeecCcEEEE
Q 031744 46 PYPVARGREATFSISATTDKAISGGKLVI 74 (153)
Q Consensus 46 Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v 74 (153)
-||+++|++++.+.++.........++++
T Consensus 72 ~CPl~~G~~~~y~~~~~V~~~~P~v~~~V 100 (120)
T cd00918 72 KCPIKKGQHYDIKYTWNVPAILPKIKAVV 100 (120)
T ss_pred eCCCcCCcEEEEEEeeeccccCCCeEEEE
Confidence 49999999999999887766444433433
No 48
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=68.91 E-value=17 Score=21.56 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=18.7
Q ss_pred EeCCCCCCeEEEEEEEEEeCCCce
Q 031744 110 VLPGFTPPGTYSLKMKMYDATKKQ 133 (153)
Q Consensus 110 ~ip~~~P~g~y~v~~~l~d~~~~~ 133 (153)
.+|.. ..|.|+++++..|..|..
T Consensus 17 t~~~~-~dG~y~itv~a~D~AGN~ 39 (54)
T PF13754_consen 17 TVPAL-ADGTYTITVTATDAAGNT 39 (54)
T ss_pred eCCCC-CCccEEEEEEEEeCCCCC
Confidence 34444 699999999999998875
No 49
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=67.46 E-value=20 Score=25.57 Aligned_cols=33 Identities=15% Similarity=0.364 Sum_probs=25.4
Q ss_pred CCCCe-eEEEEEEEeCCCCCCeEEEEEEEEEeCCCce
Q 031744 98 VSTGD-FVVAHSQVLPGFTPPGTYSLKMKMYDATKKQ 133 (153)
Q Consensus 98 l~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~ 133 (153)
+++|+ |.++..+... |.+.+.+++.++|..|++
T Consensus 50 Lk~G~~Y~l~~~~~~~---P~~svylki~F~dr~~e~ 83 (128)
T PF15432_consen 50 LKRGHTYQLKFNIDVV---PENSVYLKIIFFDRQGEE 83 (128)
T ss_pred ecCCCEEEEEEEEEEc---cCCeEEEEEEEEccCCCE
Confidence 36674 7777666643 788999999999998876
No 50
>PF13752 DUF4165: Domain of unknown function (DUF4165)
Probab=66.78 E-value=33 Score=24.40 Aligned_cols=44 Identities=23% Similarity=0.473 Sum_probs=32.9
Q ss_pred CCeeEEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEEe
Q 031744 100 TGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIG 145 (153)
Q Consensus 100 ~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i~ 145 (153)
-|+--|-.++.+|+. ..|.|+++.++.|.+|.. +.=-..++.|.
T Consensus 77 ~G~efYGk~ltlp~l-~dG~ytvk~eiL~s~g~v-V~t~s~~~~ID 120 (124)
T PF13752_consen 77 NGKEFYGKELTLPAL-GDGTYTVKSEILDSQGTV-VQTYSYPFTID 120 (124)
T ss_pred CCceeeeeEEEeccC-CCCcEEEEEEeeccCCCE-EEeeeEeEEEe
Confidence 354235666778875 799999999999999987 76666666654
No 51
>KOG3780 consensus Thioredoxin binding protein TBP-2/VDUP1 [General function prediction only]
Probab=65.22 E-value=23 Score=29.58 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=27.4
Q ss_pred CCCCeeEEEEEEEeCCCCCC--------eEEEEEEEEEeCC
Q 031744 98 VSTGDFVVAHSQVLPGFTPP--------GTYSLKMKMYDAT 130 (153)
Q Consensus 98 l~~G~~~~~~~~~ip~~~P~--------g~y~v~~~l~d~~ 130 (153)
+.+|+|+|.+.+.||..+|+ +.|.+++++.-..
T Consensus 102 l~~G~~~~pF~~~LP~~~P~Sfeg~~G~irY~vk~~idr~~ 142 (427)
T KOG3780|consen 102 LPPGNYEFPFSFTLPLNLPPSFEGKFGHVRYFVKAEIDRPW 142 (427)
T ss_pred cCCCceEEeEeccCCCCCCCceeeCCceEEEEEEEEEecCC
Confidence 78999999999999987765 4789999877643
No 52
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=64.86 E-value=31 Score=21.46 Aligned_cols=40 Identities=23% Similarity=0.507 Sum_probs=28.0
Q ss_pred CCCCee-EEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEE
Q 031744 98 VSTGDF-VVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDF 142 (153)
Q Consensus 98 l~~G~~-~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v 142 (153)
+..|.| +|+.....| -+.|..+|++ .|++|+. |.=.+|.+
T Consensus 25 i~g~r~Rt~S~k~~~~--~~~G~WrV~V--~~~~G~~-l~~~~F~V 65 (66)
T PF11141_consen 25 ISGGRWRTWSSKQNFP--DQPGDWRVEV--VDEDGQV-LGSLRFSV 65 (66)
T ss_pred ccCCCEEEEEEeecCC--CCCcCEEEEE--EcCCCCE-EEEEEEEE
Confidence 454457 777776666 4578877655 8888888 88777765
No 53
>PLN02604 oxidoreductase
Probab=64.83 E-value=54 Score=29.06 Aligned_cols=16 Identities=31% Similarity=0.739 Sum_probs=12.1
Q ss_pred CCCCCCCCe-eEEEEEE
Q 031744 94 TSCPVSTGD-FVVAHSQ 109 (153)
Q Consensus 94 ~~CPl~~G~-~~~~~~~ 109 (153)
..||+.+|+ |+|.+..
T Consensus 100 tq~~i~pg~s~~y~f~~ 116 (566)
T PLN02604 100 TQCPILPGETFTYEFVV 116 (566)
T ss_pred ccCccCCCCeEEEEEEc
Confidence 479999996 6666654
No 54
>PF10029 DUF2271: Predicted periplasmic protein (DUF2271); InterPro: IPR014469 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=61.65 E-value=32 Score=24.78 Aligned_cols=45 Identities=16% Similarity=0.366 Sum_probs=31.7
Q ss_pred CCCCeeEE--EEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEE
Q 031744 98 VSTGDFVV--AHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSI 144 (153)
Q Consensus 98 l~~G~~~~--~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i 144 (153)
..+|+|++ ..........|+|.|++.++..-++|...+ ++++|++
T Consensus 74 ~~~G~~~~~~d~~~~~~~~l~~g~Y~l~vEaarE~g~~~l--~~~~~~l 120 (139)
T PF10029_consen 74 RPPGKYTLSWDGTDDIGNPLPDGGYTLRVEAAREHGGREL--VRIPFPL 120 (139)
T ss_pred CCCCccEEEEEccccccCccCCCcEEEEEEEEEEECCcEE--EEEEEEe
Confidence 45687744 445666677899999999998887766424 5666666
No 55
>PF02494 HYR: HYR domain; InterPro: IPR003410 This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion. In the Sushi repeat-containing protein (SrpX), this domain is found between two sushi repeats.
Probab=60.23 E-value=15 Score=23.37 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=20.8
Q ss_pred CCCCCeEEEEEEEEEeCCCceEEEEE
Q 031744 113 GFTPPGTYSLKMKMYDATKKQVLTCI 138 (153)
Q Consensus 113 ~~~P~g~y~v~~~l~d~~~~~~i~C~ 138 (153)
..+|.|.+.|+++.+|..|.. -.|.
T Consensus 52 ~~f~~G~t~V~ytA~D~~GN~-a~C~ 76 (81)
T PF02494_consen 52 DLFPVGTTTVTYTATDAAGNS-ATCS 76 (81)
T ss_pred ceEeeceEEEEEEEEECCCCE-EEEE
Confidence 347789999999999999887 6773
No 56
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=58.81 E-value=75 Score=23.79 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=16.5
Q ss_pred EEEEEEeC-CCCCCeEEEEEEEEEeCCC
Q 031744 105 VAHSQVLP-GFTPPGTYSLKMKMYDATK 131 (153)
Q Consensus 105 ~~~~~~ip-~~~P~g~y~v~~~l~d~~~ 131 (153)
|..++..+ +..++|.|.|++ +|++|
T Consensus 80 YQVSW~~e~k~a~sG~y~V~~--fDEeg 105 (167)
T PF05404_consen 80 YQVSWTEEHKKASSGTYEVKF--FDEEG 105 (167)
T ss_pred eEEEEEechhhccCCceEEEE--eChHH
Confidence 35555555 557899998876 66653
No 57
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=58.35 E-value=55 Score=23.95 Aligned_cols=45 Identities=18% Similarity=0.402 Sum_probs=29.2
Q ss_pred CCCeeEEEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEEe
Q 031744 99 STGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIG 145 (153)
Q Consensus 99 ~~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i~ 145 (153)
..|.|.+.+.--.|..-+.+.|++++.+.|..|.+ .=-.+.|...
T Consensus 104 ~~~~~~~~yp~~fpsle~~~~YtLtV~a~D~aGN~--~~~si~F~y~ 148 (158)
T PF13750_consen 104 GNGVYTLEYPRIFPSLEADDSYTLTVSATDKAGNQ--STKSISFSYM 148 (158)
T ss_pred cCceEEeecccccCCcCCCCeEEEEEEEEecCCCE--EEEEEEEEEe
Confidence 34556555554455555577999999999999875 3344444433
No 58
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=57.33 E-value=19 Score=32.10 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=12.7
Q ss_pred CCCCCCCCCe-eEEEEEE
Q 031744 93 ETSCPVSTGD-FVVAHSQ 109 (153)
Q Consensus 93 ~~~CPl~~G~-~~~~~~~ 109 (153)
.+.||+.+|+ |+|.+.+
T Consensus 117 vt~~~I~PG~s~~Y~f~~ 134 (587)
T TIGR01480 117 VSFAGIAPGETFTYRFPV 134 (587)
T ss_pred ccccccCCCCeEEEEEEC
Confidence 3479999995 7777664
No 59
>PF04729 ASF1_hist_chap: ASF1 like histone chaperone; InterPro: IPR006818 This family includes the yeast and human ASF1 protein. These proteins have histone chaperone activity []. ASF1 participates in both the replication-dependent and replication-independent pathways. The structure three-dimensional has been determined as a compact immunoglobulin-like beta sandwich fold topped by three helical linkers [].; GO: 0006333 chromatin assembly or disassembly, 0005634 nucleus; PDB: 2YGV_C 1WG3_A 2HUE_A 2IDC_A 4EO5_A 1ROC_A 1TEY_A 2IO5_A 3AAD_D 2IIJ_A ....
Probab=54.07 E-value=29 Score=25.59 Aligned_cols=105 Identities=12% Similarity=0.142 Sum_probs=56.3
Q ss_pred cEEEEEEEEecCCCCCCceEEEEEEEEeceeecCc-EEEEEEEEceEEEcccCcCCCCCCCCCCCCCeeEEEEEEEeC--
Q 031744 36 DVKVHGVDISPYPVARGREATFSISATTDKAISGG-KLVIDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQVLP-- 112 (153)
Q Consensus 36 ~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G~~~~~~~~~ip-- 112 (153)
.++|++|++..+|-.-...+.++++|...+.+++. ..++ ++.|.-.--..+.-+-...-=|+..|...|.++..-|
T Consensus 3 ~V~l~~V~vl~np~~f~~p~~feI~fE~~e~L~~dleWki-iYVgSa~~~~~DQ~Ld~v~vGPi~~G~~kF~~~adpPd~ 81 (154)
T PF04729_consen 3 RVNLTNVEVLNNPAPFTDPFQFEITFECLEPLEDDLEWKI-IYVGSAESEEYDQELDSVLVGPIPVGVNKFVFEADPPDP 81 (154)
T ss_dssp SEEEEEEEESSTSEETTS-EEEEEEEEESSE-SS-EEEEE-EEESSSSSGGGEEEEEEEEECS-ESEEEEEEEEE----G
T ss_pred eEEEEEEEEeCCccccCCCEEEEEEEEECccccCCcEEEE-EEEecccccCCcEEEeeEEECCCcceeEEEEEEccCCCh
Confidence 58999999998887888889999999999888766 3333 2233210001111111111247888987666666655
Q ss_pred CCCCC----eEEEEEEEEEeCCCceEEEEEEEEEE
Q 031744 113 GFTPP----GTYSLKMKMYDATKKQVLTCITFDFS 143 (153)
Q Consensus 113 ~~~P~----g~y~v~~~l~d~~~~~~i~C~~~~v~ 143 (153)
..+|. |--.+-++... .|++ +.=+..-++
T Consensus 82 ~~Ip~~dllGvTvillt~sY-~~~E-FiRVGYYVn 114 (154)
T PF04729_consen 82 SKIPPEDLLGVTVILLTCSY-RGQE-FIRVGYYVN 114 (154)
T ss_dssp GGSSCCHHSEEEEEEEEEEE-TTEE-EEEEEEEEE
T ss_pred hhCChhhccccEEEEEEEEE-CCeE-EEEEeeEEE
Confidence 44664 33333444444 4456 655544444
No 60
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=54.00 E-value=45 Score=29.32 Aligned_cols=16 Identities=19% Similarity=0.409 Sum_probs=12.7
Q ss_pred CCCCCCCCe-eEEEEEE
Q 031744 94 TSCPVSTGD-FVVAHSQ 109 (153)
Q Consensus 94 ~~CPl~~G~-~~~~~~~ 109 (153)
+.||+.+|+ |+|.+.+
T Consensus 84 TQcpI~PG~sf~Y~f~~ 100 (538)
T TIGR03390 84 SQWPIPPGHFFDYEIKP 100 (538)
T ss_pred ccCCCCCCCcEEEEEEe
Confidence 589999996 7777664
No 61
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=53.10 E-value=18 Score=23.52 Aligned_cols=26 Identities=23% Similarity=0.558 Sum_probs=16.2
Q ss_pred CCCCe-eEEEEEEEeCCCCCCeEEEEEE
Q 031744 98 VSTGD-FVVAHSQVLPGFTPPGTYSLKM 124 (153)
Q Consensus 98 l~~G~-~~~~~~~~ip~~~P~g~y~v~~ 124 (153)
+.+|+ .+|+.+++.+... +|.|++++
T Consensus 56 l~pGe~~~~~~~~~~~~~~-~G~Y~~~a 82 (82)
T PF12690_consen 56 LEPGESLTYEETWDLKDLS-PGEYTLEA 82 (82)
T ss_dssp E-TT-EEEEEEEESS-----SEEEEEEE
T ss_pred ECCCCEEEEEEEECCCCCC-CceEEEeC
Confidence 68997 4888887766644 89999875
No 62
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=52.82 E-value=47 Score=29.15 Aligned_cols=16 Identities=31% Similarity=0.818 Sum_probs=12.4
Q ss_pred CCCCCCCCe-eEEEEEE
Q 031744 94 TSCPVSTGD-FVVAHSQ 109 (153)
Q Consensus 94 ~~CPl~~G~-~~~~~~~ 109 (153)
+.||+.+|+ |+|.+..
T Consensus 78 Tq~pI~PG~s~~Y~f~~ 94 (539)
T TIGR03389 78 TQCPIQPGQSYVYNFTI 94 (539)
T ss_pred ccCCcCCCCeEEEEEEe
Confidence 589999995 6776664
No 63
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=51.50 E-value=30 Score=23.05 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=21.5
Q ss_pred CCCC-CCCe-eEEEEEEEeCCCCCCeEEEEEEEEEeCC
Q 031744 95 SCPV-STGD-FVVAHSQVLPGFTPPGTYSLKMKMYDAT 130 (153)
Q Consensus 95 ~CPl-~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~ 130 (153)
..|+ .+|+ |+|+-...+. .|.|.....+++.++|
T Consensus 55 ~~P~L~pGe~f~Y~S~~~l~--t~~G~M~G~y~~~~~~ 90 (90)
T PF04379_consen 55 QQPVLAPGESFEYTSGCPLS--TPSGSMEGSYTMVDED 90 (90)
T ss_dssp B--EE-TTEEEEEEEEEEES--SSEEEEEEEEEEEET-
T ss_pred cCceECCCCcEEEcCCCCcC--CCCEEEEEEEEEEECc
Confidence 4554 7887 5555555444 5789999999998864
No 64
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=49.27 E-value=32 Score=24.55 Aligned_cols=37 Identities=30% Similarity=0.359 Sum_probs=25.1
Q ss_pred EEEEEeC-CCCCCeEEEEEEEEEeCCCceEEEEEEEEEEEe
Q 031744 106 AHSQVLP-GFTPPGTYSLKMKMYDATKKQVLTCITFDFSIG 145 (153)
Q Consensus 106 ~~~~~ip-~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i~ 145 (153)
.+.+++. ..+++|+|++++++.++++. .=++-+|+|.
T Consensus 93 ~~~i~~~~~~lk~G~Y~l~~~~~~~~~~---W~f~k~F~It 130 (140)
T PF11797_consen 93 NFPIPLGGKKLKPGKYTLKITAKSGKKT---WTFTKDFTIT 130 (140)
T ss_pred EeEecCCCcCccCCEEEEEEEEEcCCcE---EEEEEEEEEC
Confidence 3344443 56889999999999986653 3455566664
No 65
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
Probab=48.86 E-value=57 Score=22.58 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=23.6
Q ss_pred CCCCCCCe-eEEEEEEEeCCCCCCe-EEEEEEE
Q 031744 95 SCPVSTGD-FVVAHSQVLPGFTPPG-TYSLKMK 125 (153)
Q Consensus 95 ~CPl~~G~-~~~~~~~~ip~~~P~g-~y~v~~~ 125 (153)
+||+.+|+ .+++.+......+..| +..+.++
T Consensus 21 P~p~~~G~~~ti~~~~~~~~~v~~g~~~~v~~~ 53 (122)
T cd00917 21 PNPPAAGQNLTIEASGSVGKEIEDGAYVVVEVK 53 (122)
T ss_pred CCCcCCCCcEEEEEEEEECcCcCCCCEEEEEEE
Confidence 78899996 7888888888888776 5555554
No 66
>TIGR03711 acc_sec_asp3 accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=48.27 E-value=40 Score=24.33 Aligned_cols=36 Identities=22% Similarity=0.496 Sum_probs=26.2
Q ss_pred CCCC-CCCe-eEEEEEEEeCCCCCCeEEEEEEEEEeCCCce
Q 031744 95 SCPV-STGD-FVVAHSQVLPGFTPPGTYSLKMKMYDATKKQ 133 (153)
Q Consensus 95 ~CPl-~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~ 133 (153)
+=|+ +.|+ |.++.++. ..|.+.+.+++.+.|..+++
T Consensus 57 ~LPlLk~g~~Y~i~~n~~---~~P~~s~~~ki~F~dr~~~e 94 (135)
T TIGR03711 57 SLPLLKRGQTYKLSLNAD---ASPEGSVYLKITFFDRQGEE 94 (135)
T ss_pred CCcEEcCCCEEEEEEeee---eCCCceEEEEEEEeccCCce
Confidence 3455 4553 66666655 46789999999999998876
No 67
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=47.90 E-value=31 Score=26.98 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=14.4
Q ss_pred CCCCeEEEEEEEEEeCCCce
Q 031744 114 FTPPGTYSLKMKMYDATKKQ 133 (153)
Q Consensus 114 ~~P~g~y~v~~~l~d~~~~~ 133 (153)
..|.|.|+++++..+.+|+.
T Consensus 169 ~~~~G~Y~~~V~a~~~~G~~ 188 (230)
T PRK12633 169 PLADGKYSITVSASDADAKP 188 (230)
T ss_pred cCCCcceEEEEEEEeCCCcE
Confidence 36778888888777766664
No 68
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=46.58 E-value=36 Score=26.48 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=11.8
Q ss_pred CCCeEEEEEEEEEeCCCc
Q 031744 115 TPPGTYSLKMKMYDATKK 132 (153)
Q Consensus 115 ~P~g~y~v~~~l~d~~~~ 132 (153)
.|.|.|++++...+.+|+
T Consensus 163 ~~~G~Yt~~v~a~~~~G~ 180 (221)
T PRK12634 163 MAAGKYGVTATQTDTAGS 180 (221)
T ss_pred CCCeeeEEEEEEEeCCCc
Confidence 566777777766665555
No 69
>TIGR03786 strep_pil_rpt streptococcal pilin isopeptide linkage domain. This model describes a domain that occurs once in the major pilin of Streptococcus pyogenes, Spy0128, but in higher copy numbers in other streptococcal proteins. The domain occurs nine times in a surface-anchored protein of Bifidobacterium longum. All members of this family have LPXTG-type sortase target sequences. The S. pyogenes major pilin has been shown to undergo isopeptide bond cross-linking, mediated by sortases, that are critical to maintaining pilus structural integrity. One such Lys-to-Asn isopeptide bond is to a near-invariant Asn near the C-terminal end of this domain (column 81 of the seed alignment). A Glu in the S. pyogenes major pilin (column 25 of the seed alignment), invariant as Glu or Gln, is described as catalytic for isopeptide bond formation.
Probab=43.77 E-value=78 Score=19.60 Aligned_cols=34 Identities=15% Similarity=0.294 Sum_probs=23.0
Q ss_pred CCCeeEEEEEEEeCCCCCCe-----EEEEEEEEEeCCCce
Q 031744 99 STGDFVVAHSQVLPGFTPPG-----TYSLKMKMYDATKKQ 133 (153)
Q Consensus 99 ~~G~~~~~~~~~ip~~~P~g-----~y~v~~~l~d~~~~~ 133 (153)
++|.|+|+++.. ....|.. .|++++.+.|+.+.+
T Consensus 8 ~~G~Y~YtV~E~-~g~~~gvtYD~~~~~vtV~V~~~~~G~ 46 (64)
T TIGR03786 8 KVGTYTYTITEV-KGKEPGVTYDTTVHTVTVTVTDDEQGK 46 (64)
T ss_pred CCeEEEEEEEEe-CCCCCCeEecCCEEEEEEEEEECCCCc
Confidence 579999988853 4444443 577888888864333
No 70
>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria. They have two conserved sequence motifs: AGN and GMT.
Probab=42.34 E-value=77 Score=19.12 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=18.2
Q ss_pred eCCCCCCeEEEEEEEEEeCCCce
Q 031744 111 LPGFTPPGTYSLKMKMYDATKKQ 133 (153)
Q Consensus 111 ip~~~P~g~y~v~~~l~d~~~~~ 133 (153)
+|..--.|.|+++++.+|..|..
T Consensus 16 ~P~~~~dg~yt~~v~a~D~AGN~ 38 (60)
T PF12245_consen 16 IPENDADGEYTLTVTATDKAGNT 38 (60)
T ss_pred ccCccCCccEEEEEEEEECCCCE
Confidence 45444467999999999999886
No 71
>COG1952 SecB Preprotein translocase subunit SecB [Intracellular trafficking and secretion]
Probab=41.75 E-value=42 Score=24.81 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=19.2
Q ss_pred EEEEEEEceE----EEcccCcCCCCCCCCCC
Q 031744 72 LVIDVSYFGW----HIHSETHDLCDETSCPV 98 (153)
Q Consensus 72 ~~v~~~~~~~----~~~~~~~d~C~~~~CPl 98 (153)
..+.+.++|+ .++.++-+.|-+..||=
T Consensus 76 F~~Ev~qaGvF~i~~i~~e~m~~~L~i~CP~ 106 (157)
T COG1952 76 FLCEVQQAGIFRIAGIPEEQMAHLLGIECPN 106 (157)
T ss_pred EEEEEEEeeEEEEcCCCHHHhhhhhhccCch
Confidence 3678888875 45556667888888883
No 72
>PRK13031 preprotein translocase subunit SecB; Provisional
Probab=41.45 E-value=52 Score=24.14 Aligned_cols=46 Identities=11% Similarity=0.142 Sum_probs=27.0
Q ss_pred ceEEEEEEEEeceeecCcEE-EEEEEEceE----EEcccCcCCCCCCCCCC
Q 031744 53 REATFSISATTDKAISGGKL-VIDVSYFGW----HIHSETHDLCDETSCPV 98 (153)
Q Consensus 53 ~~~~i~~~~~~~~~i~~~~~-~v~~~~~~~----~~~~~~~d~C~~~~CPl 98 (153)
...++..+.+++.+.++.++ .+.+.++|+ .+|....+.+-...||=
T Consensus 53 ~~yEV~L~vtvta~~~~~t~FlvEv~qaGIF~i~nipee~~~~~L~i~CP~ 103 (149)
T PRK13031 53 NTYETVLTLEVKVENDGMVAFEAEVKQAGIFTVANMQEAQIEHAKKAFCPN 103 (149)
T ss_pred CcEEEEEEEEEEEEeCCceEEEEEEeEeeEEEEcCCCHHHHHHHHhcCCcc
Confidence 33555555555555555554 678888885 34554555555567873
No 73
>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor [].
Probab=40.40 E-value=1.2e+02 Score=25.78 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=30.7
Q ss_pred CCCCe-eEEEEEEEeCCCCCC--------eEEEEEEEEEeCCCce-EEEEEEEEEEEe
Q 031744 98 VSTGD-FVVAHSQVLPGFTPP--------GTYSLKMKMYDATKKQ-VLTCITFDFSIG 145 (153)
Q Consensus 98 l~~G~-~~~~~~~~ip~~~P~--------g~y~v~~~l~d~~~~~-~i~C~~~~v~i~ 145 (153)
+.+|+ .+|.+++.+|..+|+ ..|.+.+.+.-..+.. ..-=++|+++|.
T Consensus 115 L~pge~k~f~~~~~lP~~lPPsy~g~~i~~~Y~l~vg~~~~~~~~~~~~~~~~Pi~v~ 172 (415)
T PF08737_consen 115 LAPGESKSFHFSFTLPKDLPPSYRGKAIKISYSLVVGTQRGSSVNSKVKSIRVPIRVL 172 (415)
T ss_pred ECCCCcEEEEEEEeCCCCCCCCCcCcEEEEEEEEEEEEEEcCCCCcceEEEEeCEEEe
Confidence 68897 589999999988887 2566666555422221 034456666655
No 74
>PF06775 Seipin: Putative adipose-regulatory protein (Seipin); InterPro: IPR009617 Seipin is a protein of approximately 400 residues in humans, which is the product of a gene homologous to the murine guanine nucleotide-binding protein (G protein) gamma-3 linked gene. This gene is implicated in the regulation of body fat distribution and insulin resistance and particularly in the auto-immune disease Berardinelli-Seip congenital lipodystrophy type 2. Seipin has no similarity with other known proteins or consensus motifs that might predict its function, but it is predicted to contain two transmembrane domains at residues 28-49 and 237-258, in humans, and a third transmembrane domain might be present at residues 155-173. Seipin may also be implicated in Silver spastic paraplegia syndrome and distal hereditary motor neuropathy type V [].
Probab=39.42 E-value=1.2e+02 Score=22.92 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=29.9
Q ss_pred CCCCe-eEEEEEEEeCCC---CCCeEEEEEEEEEeCCCceEEE
Q 031744 98 VSTGD-FVVAHSQVLPGF---TPPGTYSLKMKMYDATKKQVLT 136 (153)
Q Consensus 98 l~~G~-~~~~~~~~ip~~---~P~g~y~v~~~l~d~~~~~~i~ 136 (153)
+.+|+ |....++.+|.. .--|...+.+++.+.+|+. +.
T Consensus 53 l~~~q~Ydv~v~L~lP~S~~N~~lG~Fmv~l~l~s~~~~~-l~ 94 (199)
T PF06775_consen 53 LPPGQPYDVSVELELPESPYNRDLGMFMVSLELLSANGKV-LA 94 (199)
T ss_pred cCCCceEEEEEEEEeCCCCCcCCCCeEEEEEEEEcCCCcE-EE
Confidence 56786 888888888864 3458999999999999876 54
No 75
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=39.12 E-value=99 Score=22.36 Aligned_cols=104 Identities=11% Similarity=0.166 Sum_probs=39.2
Q ss_pred ccceecCcCC----CccEEEEEEEEecCCCCCCceEEEEEEEEeceeecCcEEEEEEE-EceE-EEcccCcCCCCC-CCC
Q 031744 24 TDVKYCDKNA----DYDVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVS-YFGW-HIHSETHDLCDE-TSC 96 (153)
Q Consensus 24 ~~~~~C~~~~----~~~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~-~~~~-~~~~~~~d~C~~-~~C 96 (153)
.-+..|.+.= .++++|...-+ |-.+++|++++|+.+-.-..+.......++-. ..|- .+-..+.-.... -.=
T Consensus 16 ~~l~sC~deLDIQQ~YpF~v~tmPV-pk~I~~GeTvEIR~~l~reG~y~~t~Y~iRYFQ~dGkG~L~~~~g~~~~pND~Y 94 (137)
T PF12988_consen 16 LLLSSCDDELDIQQAYPFTVETMPV-PKKIKKGETVEIRCELKREGNYADTRYTIRYFQPDGKGTLRMDDGTVLLPNDRY 94 (137)
T ss_dssp -------TTS------SEEEEE-----SS--TTEEEEEEEEEEESS--SS---EEEEE-SSS-EEEEETTS-EE-TTSEE
T ss_pred HHHhhcCCccceeecCCcEEEEecc-ccccCCCCEEEEEEEEecCceecccEEEEEEEeecCCEEEEecCCcEeccccce
Confidence 4456675531 24555544332 23488999999988766555544433333211 0110 010000000100 124
Q ss_pred CCCCCeeEEEEEEEeCCCCCCeEEEEEEEEEeCCCce
Q 031744 97 PVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQ 133 (153)
Q Consensus 97 Pl~~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~ 133 (153)
|+..+.|++=++-. -..+=++.+.+.|.-|+.
T Consensus 95 ~L~~~~FRLYYTS~-----s~~~q~idv~veDnfGq~ 126 (137)
T PF12988_consen 95 PLEKEVFRLYYTSR-----SDDQQTIDVYVEDNFGQE 126 (137)
T ss_dssp E-S-SEEEEEEEE------SSS-EEEEEEEEETTTEE
T ss_pred ecCcCEEEEEEecC-----CCCCceeEEEEEeCCCCE
Confidence 56667665544421 134567888888888765
No 76
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=39.04 E-value=49 Score=26.49 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=11.4
Q ss_pred CCCeEEEEEEEEEeCCCce
Q 031744 115 TPPGTYSLKMKMYDATKKQ 133 (153)
Q Consensus 115 ~P~g~y~v~~~l~d~~~~~ 133 (153)
.|.|.|++++...+.+|+.
T Consensus 182 ~~~G~Yt~~v~A~~~~G~~ 200 (259)
T PRK12812 182 AGDGEYTIKAVYNNKNGEK 200 (259)
T ss_pred CCCeeeEEEEEEEcCCCcE
Confidence 4566666666666555543
No 77
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=39.01 E-value=51 Score=19.50 Aligned_cols=33 Identities=24% Similarity=0.505 Sum_probs=16.6
Q ss_pred Ccc-hhhHHHHHHHHHHHHhhcccccceecCcCC
Q 031744 1 MAT-IKFKLAIVLSLCLIVDLARATDVKYCDKNA 33 (153)
Q Consensus 1 ~~~-~~~~~ll~~~l~~~~~~~~~~~~~~C~~~~ 33 (153)
||. .++.-.+++.|.+.+.+.+......|.+..
T Consensus 1 Ma~ilKFvY~mIiflslflv~~~~~~~~~C~~d~ 34 (54)
T PF07127_consen 1 MAKILKFVYAMIIFLSLFLVVTNVDAIIPCKTDS 34 (54)
T ss_pred CccchhhHHHHHHHHHHHHhhcccCCCcccCccc
Confidence 666 455444444444333333333577786653
No 78
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=38.75 E-value=81 Score=22.36 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=26.9
Q ss_pred CCCCe-eEEEEEEEeCCCCCCeEEEEEEEEEeCCCce
Q 031744 98 VSTGD-FVVAHSQVLPGFTPPGTYSLKMKMYDATKKQ 133 (153)
Q Consensus 98 l~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~ 133 (153)
+++|+ |+|+-.. |-..|.|....+..+.|++|..
T Consensus 75 l~PG~~y~YtSg~--~l~Tp~G~M~GhY~M~~e~G~~ 109 (126)
T COG2967 75 LAPGEEYQYTSGC--PLDTPSGTMQGHYEMIDEDGET 109 (126)
T ss_pred cCCCCceEEcCCc--CccCCcceEEEEEEEecCCCcE
Confidence 57885 7776554 4447899999999999999986
No 79
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=37.07 E-value=37 Score=19.68 Aligned_cols=28 Identities=11% Similarity=0.198 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHhhcccccceecCcC
Q 031744 5 KFKLAIVLSLCLIVDLARATDVKYCDKN 32 (153)
Q Consensus 5 ~~~~ll~~~l~~~~~~~~~~~~~~C~~~ 32 (153)
|+.+++++.+.+++++-++...||=+.+
T Consensus 3 Ki~~~~i~~~~~~L~aCQaN~iRDvqGG 30 (46)
T PF02402_consen 3 KIIFIGIFLLTMLLAACQANYIRDVQGG 30 (46)
T ss_pred EEEEeHHHHHHHHHHHhhhcceecCCCc
Confidence 3334444444433444456677777654
No 80
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=36.43 E-value=42 Score=24.04 Aligned_cols=26 Identities=23% Similarity=0.613 Sum_probs=21.7
Q ss_pred CCCeEEE-EEEEEEeCCCceEEEEEEEE
Q 031744 115 TPPGTYS-LKMKMYDATKKQVLTCITFD 141 (153)
Q Consensus 115 ~P~g~y~-v~~~l~d~~~~~~i~C~~~~ 141 (153)
+|.|.|. +++.+-+..|.. -.|+-|+
T Consensus 93 ~PaG~YeAlrI~IG~g~G~N-WWCVLfP 119 (130)
T PF09551_consen 93 LPAGEYEALRITIGEGKGHN-WWCVLFP 119 (130)
T ss_pred ccCCceEEEEEEecCccCcc-eEEEecC
Confidence 6888876 688899889998 9999876
No 81
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=34.62 E-value=89 Score=23.08 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=16.3
Q ss_pred CCCCCCceEEEEEEEEecee
Q 031744 47 YPVARGREATFSISATTDKA 66 (153)
Q Consensus 47 c~~~~G~~~~i~~~~~~~~~ 66 (153)
||+.+|++++...++...++
T Consensus 108 CPl~age~ytY~~slpI~~~ 127 (158)
T KOG4063|consen 108 CPLSAGEDYTYLNSLPITEN 127 (158)
T ss_pred CcccCCCceEEEEEeecccc
Confidence 88999999998888766653
No 82
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=33.63 E-value=1.3e+02 Score=20.51 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=21.2
Q ss_pred EEEEEeCCCCCCeEEEEEEEEEeCCCc
Q 031744 106 AHSQVLPGFTPPGTYSLKMKMYDATKK 132 (153)
Q Consensus 106 ~~~~~ip~~~P~g~y~v~~~l~d~~~~ 132 (153)
.+.+.||..++.|.|+++++-.-..+.
T Consensus 65 ~l~~~lPa~L~~G~Y~l~V~Tq~~~~~ 91 (102)
T PF14734_consen 65 RLIFILPADLAAGEYTLEVRTQYSGGK 91 (102)
T ss_pred EEEEECcCccCceEEEEEEEEEecCCC
Confidence 566789999999999999986655533
No 83
>KOG3265 consensus Histone chaperone involved in gene silencing [Transcription; Chromatin structure and dynamics]
Probab=33.17 E-value=2.5e+02 Score=22.29 Aligned_cols=79 Identities=18% Similarity=0.158 Sum_probs=50.5
Q ss_pred cEEEEEEEEecCCCCCCceEEEEEEEEeceeecCc-EEEEEEEEceEEEcccCcC--CCCCCCCCCCCCeeEEEEEEEeC
Q 031744 36 DVKVHGVDISPYPVARGREATFSISATTDKAISGG-KLVIDVSYFGWHIHSETHD--LCDETSCPVSTGDFVVAHSQVLP 112 (153)
Q Consensus 36 ~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~~~~~~~d--~C~~~~CPl~~G~~~~~~~~~ip 112 (153)
.++|++|.+.-+|-+=+..+.++++|.--..+..+ ..++ ++.|.- -+..+| +=..+==|+..|.+.|.+...-|
T Consensus 3 ~v~i~~V~Vl~Npa~F~dPfkFEItFEC~E~Lk~DLEWkl-iYVGSa--~See~DQvLdsilVGPVP~G~~~FVf~AD~P 79 (250)
T KOG3265|consen 3 KVNILNVEVLDNPAKFVDPFKFEITFECLEELKHDLEWKL-IYVGSA--ESEEYDQVLDSILVGPVPVGRHKFVFQADAP 79 (250)
T ss_pred eeeeeeEEEccCccccCCceeEEEEEEEhhhcCCCceEEE-EEeecc--ccchhhhhhhheeeccccccceEEEEecCCC
Confidence 57899999999988889999999999877766665 3333 223321 122222 11113468999987666665544
Q ss_pred --CCCCC
Q 031744 113 --GFTPP 117 (153)
Q Consensus 113 --~~~P~ 117 (153)
..+|.
T Consensus 80 d~~kIP~ 86 (250)
T KOG3265|consen 80 DPSKIPE 86 (250)
T ss_pred CcccCcc
Confidence 44664
No 84
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=31.02 E-value=1.3e+02 Score=18.46 Aligned_cols=17 Identities=29% Similarity=0.673 Sum_probs=14.6
Q ss_pred CeEEEEEEEEEeCCCce
Q 031744 117 PGTYSLKMKMYDATKKQ 133 (153)
Q Consensus 117 ~g~y~v~~~l~d~~~~~ 133 (153)
+|.|+++++..|++|..
T Consensus 56 ~G~y~v~l~v~d~~g~~ 72 (81)
T cd00146 56 PGTYTVTLTVTNAVGSS 72 (81)
T ss_pred CcEEEEEEEEEeCCCCE
Confidence 79999999999987654
No 85
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=30.04 E-value=74 Score=19.20 Aligned_cols=16 Identities=25% Similarity=0.671 Sum_probs=14.5
Q ss_pred CeEEEEEEEEEeCCCc
Q 031744 117 PGTYSLKMKMYDATKK 132 (153)
Q Consensus 117 ~g~y~v~~~l~d~~~~ 132 (153)
+|.|+|+++..|..|.
T Consensus 51 ~G~y~V~ltv~n~~g~ 66 (69)
T PF00801_consen 51 PGTYTVTLTVTNGVGS 66 (69)
T ss_dssp SEEEEEEEEEEETTSE
T ss_pred CeEEEEEEEEEECCCC
Confidence 8999999999998875
No 86
>cd00915 MD-1_MD-2 MD-1 and MD-2 are cofactors required for LPS signaling through cell surface receptors. MD-2 and its binding partner, Toll-like receptor 4 (TLR4), are essential for the innate immune responses of mammalian cells to bacterial lipopolysaccharide (LPS); MD-2 directly binds the lipid A moiety of LPS. The TLR4-like receptor, RP105, which mediates LPS-induced lymphocyte proliferation, interacts with MD-1; MD-1 enhances RP105-mediated LPS-induced growth of B cells. These proteins belong to the ML domain family.
Probab=30.02 E-value=89 Score=22.34 Aligned_cols=31 Identities=16% Similarity=0.074 Sum_probs=22.2
Q ss_pred ecCCCCCCceEEEE--EEEEeceeecCcEEEEEE
Q 031744 45 SPYPVARGREATFS--ISATTDKAISGGKLVIDV 76 (153)
Q Consensus 45 ~Pc~~~~G~~~~i~--~~~~~~~~i~~~~~~v~~ 76 (153)
+-||+++|++++.. .++...+ ...+.+.+..
T Consensus 81 s~CP~~kGet~~Y~~p~slpi~~-yP~~~y~V~w 113 (130)
T cd00915 81 SFCGALKGETVYYVGPFSFKGIL-IPQGQYRCVA 113 (130)
T ss_pred ccCCccCCceEEEeeeecccccc-cCCccEEEEE
Confidence 46999999999888 6666666 6666554443
No 87
>COG5137 Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]
Probab=29.64 E-value=2.7e+02 Score=22.01 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=46.6
Q ss_pred cEEEEEEEEecCCCCCCceEEEEEEEEeceeecCcEEEEEEEEce-EEEcccCcCCCCCCCCCCCCCeeEEEEEEEeC
Q 031744 36 DVKVHGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYFG-WHIHSETHDLCDETSCPVSTGDFVVAHSQVLP 112 (153)
Q Consensus 36 ~~~i~~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~-~~~~~~~~d~C~~~~CPl~~G~~~~~~~~~ip 112 (153)
.+++.++.+.-.|.+-|..+.++++|.--..+..+ +.-.+.|.| ..--..+.-+-..+-=|+..|...|.++..-|
T Consensus 3 iv~llsi~VlnnpaKf~DPykFeitFeClE~lK~d-lEwkltYvgs~~S~~~DQvLd~ilVgPiP~G~nkFvf~ADpP 79 (279)
T COG5137 3 IVKLLSIEVLNNPAKFGDPYKFEITFECLEELKCD-LEWKLTYVGSVHSDENDQVLDEILVGPIPKGKNKFVFDADPP 79 (279)
T ss_pred eeeeEEEEeecChhhcCCCeeeEEEEEEhhhhcCC-ceEEEEEeeccccccchhhhhheeeccccccceeEEeecCCC
Confidence 47889999999999999999999999777666555 222233332 22112222222223467777865555554444
No 88
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=29.28 E-value=2.4e+02 Score=24.77 Aligned_cols=16 Identities=25% Similarity=0.708 Sum_probs=12.2
Q ss_pred CCCCCCCCe-eEEEEEE
Q 031744 94 TSCPVSTGD-FVVAHSQ 109 (153)
Q Consensus 94 ~~CPl~~G~-~~~~~~~ 109 (153)
..||+.+|+ |+|.+..
T Consensus 77 tq~~I~PG~s~~y~f~~ 93 (541)
T TIGR03388 77 TQCAINPGETFIYNFVV 93 (541)
T ss_pred ccCCcCCCCEEEEEEEc
Confidence 479999996 6776654
No 89
>TIGR02837 spore_II_R stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage II sporulation protein R.
Probab=28.99 E-value=63 Score=24.19 Aligned_cols=26 Identities=23% Similarity=0.595 Sum_probs=22.3
Q ss_pred CCCeEEE-EEEEEEeCCCceEEEEEEEE
Q 031744 115 TPPGTYS-LKMKMYDATKKQVLTCITFD 141 (153)
Q Consensus 115 ~P~g~y~-v~~~l~d~~~~~~i~C~~~~ 141 (153)
+|.|.|. +++.+-+.+|.. -.|+-||
T Consensus 128 ~PaG~YeAlrI~IG~g~G~N-WWCVlfP 154 (168)
T TIGR02837 128 LPAGEYEALRILIGEGAGAN-WWCVVFP 154 (168)
T ss_pred ccCCceEEEEEEecCcCCcc-eEEEecC
Confidence 6899987 588999989998 9999876
No 90
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=28.72 E-value=43 Score=22.24 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=14.0
Q ss_pred cEEEEEEEEecCC--CCCCceEEEEEE
Q 031744 36 DVKVHGVDISPYP--VARGREATFSIS 60 (153)
Q Consensus 36 ~~~i~~v~i~Pc~--~~~G~~~~i~~~ 60 (153)
.+++.+-..+|.. +++|+++++++.
T Consensus 24 ~I~~~~~~f~P~~i~v~~G~~v~l~~~ 50 (104)
T PF13473_consen 24 TITVTDFGFSPSTITVKAGQPVTLTFT 50 (104)
T ss_dssp ------EEEES-EEEEETTCEEEEEEE
T ss_pred cccccCCeEecCEEEEcCCCeEEEEEE
Confidence 5777777888864 778998887765
No 91
>PRK10965 multicopper oxidase; Provisional
Probab=28.44 E-value=76 Score=27.90 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=11.5
Q ss_pred CCCCCCCe-eEEEEEE
Q 031744 95 SCPVSTGD-FVVAHSQ 109 (153)
Q Consensus 95 ~CPl~~G~-~~~~~~~ 109 (153)
.||+.+|+ ++|.+..
T Consensus 117 q~~I~PG~s~~Y~f~~ 132 (523)
T PRK10965 117 QGIIAPGGKRTVTFTV 132 (523)
T ss_pred CCCCCCCCEEEEEecc
Confidence 79999996 6766654
No 92
>COG3656 Predicted periplasmic protein [Function unknown]
Probab=27.43 E-value=1.6e+02 Score=21.60 Aligned_cols=45 Identities=22% Similarity=0.345 Sum_probs=28.6
Q ss_pred CCCeeEEEEE--EEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEEe
Q 031744 99 STGDFVVAHS--QVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIG 145 (153)
Q Consensus 99 ~~G~~~~~~~--~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i~ 145 (153)
.+|.|.+..+ -.--+.+|+|.|++-++..-+-|.. .=++.+|...
T Consensus 102 ~pG~y~l~~dg~k~~lk~lppG~Y~lvVEa~REvGg~--elvr~pfswg 148 (172)
T COG3656 102 NPGTYALAWDGKKDKLKLLPPGDYYLVVEAGREVGGY--ELVRQPFSWG 148 (172)
T ss_pred CCCceEEEecCccchhccCCCCcEEEEEEeccccCCc--eeEEeeeecc
Confidence 4677755443 2234668999999999888776653 2344555443
No 93
>PTZ00487 ceramidase; Provisional
Probab=27.16 E-value=4e+02 Score=24.64 Aligned_cols=90 Identities=12% Similarity=0.061 Sum_probs=52.1
Q ss_pred EEEEEecCC---CCCCceEEEEEEE-EeceeecCc--EEEEEEEEc--eEEEcccCcCCCCCC--CCCCCCCeeEEEEEE
Q 031744 40 HGVDISPYP---VARGREATFSISA-TTDKAISGG--KLVIDVSYF--GWHIHSETHDLCDET--SCPVSTGDFVVAHSQ 109 (153)
Q Consensus 40 ~~v~i~Pc~---~~~G~~~~i~~~~-~~~~~i~~~--~~~v~~~~~--~~~~~~~~~d~C~~~--~CPl~~G~~~~~~~~ 109 (153)
-+|...|.+ ..+|+.++.++.+ +.+.++... .+.|.-.-+ .|.....+.|-+-.. .=+ ..|.-..+++.
T Consensus 596 Gdv~~~~~~~~~y~~g~~v~~~F~~a~Prn~l~~~~tf~~Ve~~~~~~~W~~v~~D~dw~t~~~W~r~-~~~~S~~ti~W 674 (715)
T PTZ00487 596 GDLYQDVDTEKVYSNNDTVSAEFYGGNPRNNFMTESSFLTVDKLNEKNQWTTILVDGDWDTKWHWKMH-DLGFSLITIIW 674 (715)
T ss_pred CcEeccCCcccccCCCCEEEEEEEecCCCCccccCcceEEEEEecCCCceeEeccCCCcceEEEEecc-CCCceeEEEEE
Confidence 344444443 4568888877655 344343333 233332112 276666666666531 001 12444678889
Q ss_pred EeCCCCCCeEEEEEEEEEeCC
Q 031744 110 VLPGFTPPGTYSLKMKMYDAT 130 (153)
Q Consensus 110 ~ip~~~P~g~y~v~~~l~d~~ 130 (153)
.||..+|+|.|+|+-.-..+.
T Consensus 675 ~i~~~~~~G~YRi~~~G~~k~ 695 (715)
T PTZ00487 675 SIGPTTEPGTYRITHSGYAKK 695 (715)
T ss_pred ECCCCCCCeeeEEEEeecccc
Confidence 999999999999987665544
No 94
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=25.60 E-value=1.3e+02 Score=16.81 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=18.6
Q ss_pred EEEEeCCCCCCeEEEEEEEEEeCCC
Q 031744 107 HSQVLPGFTPPGTYSLKMKMYDATK 131 (153)
Q Consensus 107 ~~~~ip~~~P~g~y~v~~~l~d~~~ 131 (153)
..+.+...-|...|.++++..+..|
T Consensus 57 ~~~~i~~L~~~~~Y~v~v~a~~~~g 81 (83)
T smart00060 57 TSYTLTGLKPGTEYEFRVRAVNGAG 81 (83)
T ss_pred cEEEEeCcCCCCEEEEEEEEEcccC
Confidence 3456677777789999999888644
No 95
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=24.70 E-value=2.7e+02 Score=24.67 Aligned_cols=83 Identities=13% Similarity=0.082 Sum_probs=41.0
Q ss_pred CCCCceEEEEEEEEeceeecCcEEEEEEEEceEEEcccCcCCCCCCCCCCCCCeeEEEEEEEeCCCCCCeEEEEEEEEEe
Q 031744 49 VARGREATFSISATTDKAISGGKLVIDVSYFGWHIHSETHDLCDETSCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYD 128 (153)
Q Consensus 49 ~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~~~~~~~d~C~~~~CPl~~G~~~~~~~~~ip~~~P~g~y~v~~~l~d 128 (153)
..+++.+.+++.+.-+..+....-.+.+.+||..+-....+. ..|.-.-.+++.||...-.+.-++++++.-
T Consensus 338 ~~~~~~i~l~L~y~y~~~~~~~~S~l~V~vNg~~i~s~~L~~--------~~~~~~~~~~v~iP~~~~~~~N~l~~~f~l 409 (605)
T PF03170_consen 338 AWDGSGIPLHLRYRYTPGLDFDGSRLTVYVNGQFIGSLPLTP--------ADGAGFDRYTVSIPRLLLPGRNQLQFEFDL 409 (605)
T ss_pred ccCCCceEEEEEEecCCCCCCCCcEEEEEECCEEEEeEECCC--------CCCCccceeEEecCchhcCCCcEEEEEEEe
Confidence 456777777776655544434445566777775443333222 222222344445555444555455554443
Q ss_pred CCCceEEEEEEE
Q 031744 129 ATKKQVLTCITF 140 (153)
Q Consensus 129 ~~~~~~i~C~~~ 140 (153)
...+. -.|...
T Consensus 410 ~~~~~-~~C~~~ 420 (605)
T PF03170_consen 410 PPADD-GPCQPT 420 (605)
T ss_pred ecCCC-CcCcCC
Confidence 32222 147654
No 96
>PF11033 ComJ: Competence protein J (ComJ); InterPro: IPR020354 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. The proteins in this entry play a role in the competence of cells to be transformed. They inhibit the activity of the DNA-entry nuclease. DNA-entry nuclease inhibitor is a subunit of a 75 kDa protein complex, which governs binding and entry of donor DNA. The complex is a tetramer of two subunits of the DNA-entry nuclease and two subunits of a competence-specific protein ComJ. Only the complex is able to bind ds- and ss-DNA []. It is found in the plasma membrane.
Probab=23.98 E-value=1.5e+02 Score=21.14 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=12.5
Q ss_pred CCCCCCCCeeEEEEEE
Q 031744 94 TSCPVSTGDFVVAHSQ 109 (153)
Q Consensus 94 ~~CPl~~G~~~~~~~~ 109 (153)
+++|+.+|+|.+....
T Consensus 90 ~~~~ip~G~Y~Lv~~~ 105 (125)
T PF11033_consen 90 LSFDIPKGDYQLVFQT 105 (125)
T ss_pred EEEecCCCcEEEEEEE
Confidence 4799999999777653
No 97
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=23.94 E-value=91 Score=19.11 Aligned_cols=16 Identities=31% Similarity=0.711 Sum_probs=14.0
Q ss_pred CeEEEEEEEEEeCCCc
Q 031744 117 PGTYSLKMKMYDATKK 132 (153)
Q Consensus 117 ~g~y~v~~~l~d~~~~ 132 (153)
+|.|++++.+.|..|.
T Consensus 54 ~G~y~v~l~v~n~~g~ 69 (79)
T smart00089 54 PGTYTVTLTVTNAVGS 69 (79)
T ss_pred CcEEEEEEEEEcCCCc
Confidence 6899999999998873
No 98
>KOG1903 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=23.86 E-value=47 Score=24.95 Aligned_cols=23 Identities=35% Similarity=0.783 Sum_probs=16.9
Q ss_pred ccCcCCCCCCCCCCCCCe--eEEEE
Q 031744 85 SETHDLCDETSCPVSTGD--FVVAH 107 (153)
Q Consensus 85 ~~~~d~C~~~~CPl~~G~--~~~~~ 107 (153)
+.-.+.|...+||+-.|- |+|.-
T Consensus 77 GTise~Cte~sCP~MsGG~rYEY~W 101 (217)
T KOG1903|consen 77 GTISEFCTETSCPVMSGGPRYEYRW 101 (217)
T ss_pred hhHhhhccccCCCcccCCCcceeEe
Confidence 344689999999998883 65543
No 99
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=23.41 E-value=1.8e+02 Score=19.09 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=16.0
Q ss_pred CCCCCCe-eEEEEEEEeCCCCCCeEEEEEEEEEeCCC
Q 031744 96 CPVSTGD-FVVAHSQVLPGFTPPGTYSLKMKMYDATK 131 (153)
Q Consensus 96 CPl~~G~-~~~~~~~~ip~~~P~g~y~v~~~l~d~~~ 131 (153)
-++++|+ |++++.+....- -.+++.+.+.++
T Consensus 56 ~~l~~G~~Y~~s~~vk~~~~-----~~~~~~~~~~~~ 87 (131)
T PF02018_consen 56 ISLKPGKTYTVSFWVKADSG-----GTVSVSLRDEDG 87 (131)
T ss_dssp EEE-TTSEEEEEEEEEESSS-----EEEEEEEEESST
T ss_pred eEecCCCEEEEEEEEEeCCC-----CEEEEEEEEcCC
Confidence 3467774 666666655543 444444444444
No 100
>PRK14710 hypothetical protein; Provisional
Probab=23.33 E-value=1.8e+02 Score=18.70 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=22.3
Q ss_pred CCCCCCCeeEEEEEEEeCCCCCCeEEEEEEEEEeCCC
Q 031744 95 SCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATK 131 (153)
Q Consensus 95 ~CPl~~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~ 131 (153)
.=|=..|.+++ +|.++|.....+++...-+++
T Consensus 48 AIPE~~Gv~TW-----LP~FFP~~A~dIsi~~Nve~d 79 (86)
T PRK14710 48 AIPENDGVFTW-----LPDFFPHVAVDISIYTNVEDD 79 (86)
T ss_pred eccccCCcEEe-----ccccCCceeeeEEEEEecCCc
Confidence 34556677777 888999888777776655443
No 101
>TIGR00809 secB protein-export chaperone SecB. The archaeal Methanococcus jannaschii homolog MJ0357 has been shown (PubMed:14985117) to share many properties, including chaperone-like activity, and scores between trusted and noise.
Probab=23.02 E-value=1.4e+02 Score=21.66 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=29.5
Q ss_pred EEEEecCCCCCCceEEEEEEEEeceeecCcEE-EEEEEEceE-E---EcccCcCCCCCCCCCC
Q 031744 41 GVDISPYPVARGREATFSISATTDKAISGGKL-VIDVSYFGW-H---IHSETHDLCDETSCPV 98 (153)
Q Consensus 41 ~v~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~-~v~~~~~~~-~---~~~~~~d~C~~~~CPl 98 (153)
++++.--.+.-| ...+..+.+++...++.++ .+.+.++|+ . ++.+..+.+-...||-
T Consensus 39 ~l~~~a~~l~e~-~~EV~L~~~vtak~~~~~~Fl~Ev~~aGIF~i~~~~~e~l~~~L~i~cP~ 100 (140)
T TIGR00809 39 DLDTNSTQLSDD-FYEVVLNITVTARLEEYTAFLCEVKQAGVFNIIGIESEQMAHCLGVHCPN 100 (140)
T ss_pred EEecCceecCCC-eEEEEEEEEEEEecCCccEEEEEEEEEEEEEecCCCHHHHHHHHhcCCch
Confidence 444444334333 3555555555554444543 688888885 3 3333334444457773
No 102
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=22.93 E-value=2e+02 Score=18.88 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=19.8
Q ss_pred EEEEEEEeCCCCCCeEEEEEEEEEeCCC
Q 031744 104 VVAHSQVLPGFTPPGTYSLKMKMYDATK 131 (153)
Q Consensus 104 ~~~~~~~ip~~~P~g~y~v~~~l~d~~~ 131 (153)
.|..++.++..- +++|++++...|.+|
T Consensus 59 ~F~~tv~~~~~~-~~~g~l~v~~~s~~d 85 (88)
T PF10648_consen 59 PFEGTVSFPPPP-PGKGTLEVFEDSAKD 85 (88)
T ss_pred ceEEEEEeCCCC-CCceEEEEEEeCCCC
Confidence 667777777655 778999888777654
No 103
>TIGR03660 T1SS_rpt_143 T1SS-143 repeat domain. This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion.
Probab=22.82 E-value=2.9e+02 Score=19.75 Aligned_cols=49 Identities=14% Similarity=0.062 Sum_probs=29.9
Q ss_pred CeeEEEEEEEeCCCC--CCeEEEEEEEEEeCCCceEEEEEEEEEEEeeccccc
Q 031744 101 GDFVVAHSQVLPGFT--PPGTYSLKMKMYDATKKQVLTCITFDFSIGFASSVA 151 (153)
Q Consensus 101 G~~~~~~~~~ip~~~--P~g~y~v~~~l~d~~~~~~i~C~~~~v~i~~~~~~~ 151 (153)
|.|+|+..-+|---- -...+.+.+...|.+|.. .. ..+.++|.-+.+++
T Consensus 66 GsYtftL~~~lDH~~g~d~l~l~~~v~a~D~DGD~-s~-~~l~VtI~DD~P~~ 116 (137)
T TIGR03660 66 GSYEFTLEGPLDHAAGSDELTLNFPIIATDFDGDT-SS-ITLPVTIVDDVPTI 116 (137)
T ss_pred ccEEEEEcccccCCCCCceEEEeeeEEEEeCCCCc-cc-cEEEEEEECCCCee
Confidence 667776665553211 123455667788888876 32 58888887766554
No 104
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=22.68 E-value=1.1e+02 Score=19.50 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=16.2
Q ss_pred CCCee--EEEEEEEeCCCCCCeEEEEEEEEEeC
Q 031744 99 STGDF--VVAHSQVLPGFTPPGTYSLKMKMYDA 129 (153)
Q Consensus 99 ~~G~~--~~~~~~~ip~~~P~g~y~v~~~l~d~ 129 (153)
.+|.+ +|...-.=-...|+|.|+++++..+.
T Consensus 48 ~~G~~~~~WdG~d~~G~~~~~G~Y~~~v~a~~~ 80 (81)
T PF13860_consen 48 SAGEHSFTWDGKDDDGNPVPDGTYTFRVTATDG 80 (81)
T ss_dssp SSEEEEEEE-SB-TTS-B--SEEEEEEEEEEET
T ss_pred CCceEEEEECCCCCCcCCCCCCCEEEEEEEEeC
Confidence 55654 33333223345788899998888774
No 105
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=22.31 E-value=1.4e+02 Score=23.27 Aligned_cols=11 Identities=18% Similarity=0.613 Sum_probs=5.1
Q ss_pred CCCCeeEEEEE
Q 031744 98 VSTGDFVVAHS 108 (153)
Q Consensus 98 l~~G~~~~~~~ 108 (153)
+.+|.|+++..
T Consensus 167 lp~G~Yt~~V~ 177 (225)
T PRK06655 167 LPDGNYTIKAS 177 (225)
T ss_pred CCCeeEEEEEE
Confidence 44455544443
No 106
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=22.26 E-value=5.4e+02 Score=22.57 Aligned_cols=39 Identities=21% Similarity=0.146 Sum_probs=29.0
Q ss_pred EEEEEEeCCCCCCeEEEEEEEEEeCCCceEEEEEEEEEEEe
Q 031744 105 VAHSQVLPGFTPPGTYSLKMKMYDATKKQVLTCITFDFSIG 145 (153)
Q Consensus 105 ~~~~~~ip~~~P~g~y~v~~~l~d~~~~~~i~C~~~~v~i~ 145 (153)
.++++.+.+ .-.|+|++.++.+|.+|+. ..=..++|.+.
T Consensus 367 ~~vtL~Ls~-~~AG~y~Lvv~~t~~dG~~-~~q~~~~~~v~ 405 (478)
T PRK13211 367 QSVSLDLSK-LKAGHHMLVVKAKPKDGEL-IKQQTLDFMLE 405 (478)
T ss_pred eeEEEeccc-CCCceEEEEEEEEeCCCce-eeeeeEEEEEE
Confidence 345555555 3489999999999999886 55667777775
No 107
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=21.71 E-value=3e+02 Score=19.48 Aligned_cols=13 Identities=8% Similarity=0.194 Sum_probs=5.6
Q ss_pred EEEEEEEEeCCCc
Q 031744 120 YSLKMKMYDATKK 132 (153)
Q Consensus 120 y~v~~~l~d~~~~ 132 (153)
|.+.|+++|+.|+
T Consensus 51 yyVpF~V~N~gg~ 63 (122)
T TIGR02588 51 YYVPFAIHNLGGT 63 (122)
T ss_pred EEEEEEEEeCCCc
Confidence 4444444444433
No 108
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=21.65 E-value=96 Score=18.30 Aligned_cols=14 Identities=36% Similarity=0.126 Sum_probs=5.9
Q ss_pred hhhHHHHHHHHHHH
Q 031744 4 IKFKLAIVLSLCLI 17 (153)
Q Consensus 4 ~~~~~ll~~~l~~~ 17 (153)
+|...+++++|+.+
T Consensus 3 Kk~i~~i~~~l~~~ 16 (48)
T PRK10081 3 KKTIAAIFSVLVLS 16 (48)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 109
>PF10651 DUF2479: Domain of unknown function (DUF2479); InterPro: IPR018913 This domain is found in phage from a number of different bacteria including (Listeria phage A118 (Bacteriophage A118)). It is thought to be a putative long tail fibre protein.; PDB: 4DIV_L 3UH8_A.
Probab=21.18 E-value=2.3e+02 Score=20.70 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=24.5
Q ss_pred CCeeEEEEEEEeCCCC--CCeEEEEEEEEEeC-CCceEEEEEEEEEEEeec
Q 031744 100 TGDFVVAHSQVLPGFT--PPGTYSLKMKMYDA-TKKQVLTCITFDFSIGFA 147 (153)
Q Consensus 100 ~G~~~~~~~~~ip~~~--P~g~y~v~~~l~d~-~~~~~i~C~~~~v~i~~~ 147 (153)
.|.+.| .+|... -.|.+..++.+... +++. +.=.+|.+.|..+
T Consensus 81 ~G~i~y----~lp~~~l~~~G~v~a~~~i~~~~~~~~-~~t~~F~F~V~~s 126 (170)
T PF10651_consen 81 NGIIQY----TLPDEFLKHVGKVKAQLFIYYNGDGQS-ISTANFTFEVEDS 126 (170)
T ss_dssp TTEEEE----E--TTTTHSSEEEEEEEEEEEESSSEE-EE---EEEEEE--
T ss_pred CcEEEE----EECHHHhccCcEEEEEEEEEECCCCCE-EEEeeEEEEEecc
Confidence 565555 455442 38999999999986 5554 6666677776654
No 110
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=20.72 E-value=1.7e+02 Score=17.46 Aligned_cols=24 Identities=17% Similarity=0.498 Sum_probs=18.6
Q ss_pred EEeCCCCCCeEEEEEEEEEeCCCc
Q 031744 109 QVLPGFTPPGTYSLKMKMYDATKK 132 (153)
Q Consensus 109 ~~ip~~~P~g~y~v~~~l~d~~~~ 132 (153)
+.+...-|.-.|.+++...+..|.
T Consensus 58 ~~i~~L~p~t~Y~~~v~a~~~~g~ 81 (85)
T PF00041_consen 58 YTITGLQPGTTYEFRVRAVNSDGE 81 (85)
T ss_dssp EEEESCCTTSEEEEEEEEEETTEE
T ss_pred eeeccCCCCCEEEEEEEEEeCCcC
Confidence 345566788899999999988763
No 111
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=20.44 E-value=60 Score=19.57 Aligned_cols=7 Identities=14% Similarity=0.657 Sum_probs=4.0
Q ss_pred EEEEecC
Q 031744 41 GVDISPY 47 (153)
Q Consensus 41 ~v~i~Pc 47 (153)
++++.||
T Consensus 42 ~ls~npc 48 (60)
T PF10913_consen 42 SLSVNPC 48 (60)
T ss_pred ccccccc
Confidence 4555666
No 112
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=20.36 E-value=1.7e+02 Score=16.43 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=10.1
Q ss_pred CCeEEEEEEEE--EeCCCc
Q 031744 116 PPGTYSLKMKM--YDATKK 132 (153)
Q Consensus 116 P~g~y~v~~~l--~d~~~~ 132 (153)
-+|.|++.++. .+.+|+
T Consensus 11 ~PG~Y~l~~~a~~~~~~G~ 29 (41)
T TIGR03769 11 KPGTYTLTVQATATLTDGK 29 (41)
T ss_pred CCeEEEEEEEEEEEeCCCc
Confidence 36777776665 444454
Done!