BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031746
(153 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9YGP5|RBPMS_XENLA RNA-binding protein with multiple splicing OS=Xenopus laevis
GN=rbpms PE=2 SV=1
Length = 196
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 9/85 (10%)
Query: 55 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 114
TL+V GLP D RE+ +FRPF GY E L+ SK G FV F+N A A A
Sbjct: 21 TLFVSGLPIDIKPRELYLLFRPFKGY-EGSLIKLTSKQPVG------FVTFDNRAGAEAA 73
Query: 115 LSALQGYRMDEDDPDSKFLRLQFSR 139
+AL G R D ++P + LRL+F++
Sbjct: 74 KNALNGIRFDPENPQT--LRLEFAK 96
>sp|P34761|WHI3_YEAST Protein WHI3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=WHI3 PE=1 SV=1
Length = 661
Score = 56.6 bits (135), Expect = 6e-08, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 11/156 (7%)
Query: 4 ISKARVTGRHGATGPDLVQNLRSSSIDDQLPFDAAAR---PGHETLPLPPDASSTLYVEG 60
+S +R + ++ +T L N+ S+ Q AR P + PP +TLYV
Sbjct: 488 LSSSRNSHKNNST-TSLSSNITGSASISQADLSLLARIPPPANPADQNPP--CNTLYVGN 544
Query: 61 LPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG 120
LP+D+T++E+ +F G++ + K + G +CFV+F++ + A AL+ L G
Sbjct: 545 LPSDATEQELRQLFSGQEGFRRLSFRNKNTTSNGHSHGPMCFVEFDDVSFATRALAELYG 604
Query: 121 YRMDEDDPDSK-FLRLQFSRNP----GPRSVFGARG 151
++ SK +RL FS+NP GP S G G
Sbjct: 605 RQLPRSTVSSKGGIRLSFSKNPLGVRGPNSRRGGSG 640
>sp|Q9W6I1|RBPMS_CHICK RNA-binding protein with multiple splicing OS=Gallus gallus
GN=RBPMS PE=2 SV=1
Length = 200
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 9/85 (10%)
Query: 55 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 114
TL+V GLP D RE+ +FRPF GY E L+ KL P + FV F++ A A A
Sbjct: 23 TLFVSGLPVDIKPRELYLLFRPFKGY-EGSLI----KLTSKQP--VGFVTFDSRAGAEAA 75
Query: 115 LSALQGYRMDEDDPDSKFLRLQFSR 139
+AL G R D ++P + LRL+F++
Sbjct: 76 KNALNGIRFDPENPQT--LRLEFAK 98
>sp|Q8VC52|RBPS2_MOUSE RNA-binding protein with multiple splicing 2 OS=Mus musculus
GN=Rbpms2 PE=1 SV=1
Length = 206
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 56/109 (51%), Gaps = 21/109 (19%)
Query: 55 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 114
TL+V GLP D RE+ +FRPF GY E L+ KL P + FV F++ A A A
Sbjct: 26 TLFVSGLPVDIKPRELYLLFRPFKGY-EGSLI----KLTSRQP--VGFVIFDSRAGAEAA 78
Query: 115 LSALQGYRMDEDDPDSKFLRLQFSR------------NPGPRSVFGARG 151
+AL G R D ++P + LRL+F++ P P SV A G
Sbjct: 79 KNALNGIRFDPENPQT--LRLEFAKANTKMAKSKLIATPNPTSVHPALG 125
>sp|Q6ZRY4|RBPS2_HUMAN RNA-binding protein with multiple splicing 2 OS=Homo sapiens
GN=RBPMS2 PE=2 SV=1
Length = 209
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 9/85 (10%)
Query: 55 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 114
TL+V GLP D RE+ +FRPF GY E L+ KL P + FV F++ A A A
Sbjct: 32 TLFVSGLPVDIKPRELYLLFRPFKGY-EGSLI----KLTARQP--VGFVIFDSRAGAEAA 84
Query: 115 LSALQGYRMDEDDPDSKFLRLQFSR 139
+AL G R D ++P + LRL+F++
Sbjct: 85 KNALNGIRFDPENPQT--LRLEFAK 107
>sp|Q93062|RBPMS_HUMAN RNA-binding protein with multiple splicing OS=Homo sapiens GN=RBPMS
PE=1 SV=1
Length = 196
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 9/85 (10%)
Query: 55 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 114
TL+V GLP D RE+ +FRPF GY E L+ KL P + FV F++ + A A
Sbjct: 25 TLFVSGLPLDIKPRELYLLFRPFKGY-EGSLI----KLTSKQP--VGFVSFDSRSEAEAA 77
Query: 115 LSALQGYRMDEDDPDSKFLRLQFSR 139
+AL G R D + P + LRL+F++
Sbjct: 78 KNALNGIRFDPEIPQT--LRLEFAK 100
>sp|Q9WVB0|RBPMS_MOUSE RNA-binding protein with multiple splicing OS=Mus musculus GN=Rbpms
PE=2 SV=2
Length = 197
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 9/85 (10%)
Query: 55 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 114
TL+V GLP D RE+ +FRPF GY E L+ KL P + FV F++ + A A
Sbjct: 25 TLFVSGLPLDIKPRELYLLFRPFKGY-EGSLI----KLTSKQP--VGFVSFDSRSEAEAA 77
Query: 115 LSALQGYRMDEDDPDSKFLRLQFSR 139
+AL G R D + P + LRL+F++
Sbjct: 78 KNALNGIRFDPEIPQT--LRLEFAK 100
>sp|O74452|SCW1_SCHPO Cell wall integrity protein scw1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=scw1 PE=1 SV=1
Length = 561
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAAT 113
+T+YV LP +++ E+ +F VGYK RL + +G P +CFV+FEN A
Sbjct: 426 NTIYVGNLPPSTSEEELKVLFSTQVGYK--RLCFRT---KGNGP--MCFVEFENIPYAME 478
Query: 114 ALSALQGYRMDEDDPDSKFLRLQFSRNP 141
AL LQG + +RL FS+NP
Sbjct: 479 ALKNLQGVCLSSSIKGG--IRLSFSKNP 504
>sp|Q39244|RU1A_ARATH U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A
PE=1 SV=1
Length = 250
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 32 QLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESK 91
Q+P+ +P P PP+ + L+V+ LP ++T + +F + G+KEVR++ E+K
Sbjct: 157 QVPYPGGMKPNMPEAPAPPN--NILFVQNLPHETTPMVLQMLFCQYQGFKEVRMI--EAK 212
Query: 92 LRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 127
P I FV+F + + A+ LQG+++ ++
Sbjct: 213 -----PGI-AFVEFADEMQSTVAMQGLQGFKIQQNQ 242
>sp|Q01617|CPO_DROME Protein couch potato OS=Drosophila melanogaster GN=cpo PE=2 SV=3
Length = 738
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 55 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATA 114
TL+V GLP D+ RE+ +FR + GY+ L + + P + FV F A A A
Sbjct: 452 TLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASP--VGFVTFHTRAGAEAA 509
Query: 115 LSALQGYRMDEDDPDSKFLRLQFSRN 140
LQG R D D P + +RL+F+++
Sbjct: 510 KQDLQGVRFDPDMPQT--IRLEFAKS 533
>sp|Q10MR0|RU2B_ORYSJ U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
japonica GN=Os03g0298800 PE=2 SV=1
Length = 232
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 52/82 (63%), Gaps = 10/82 (12%)
Query: 47 PLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFE 106
P PP+ + L+++ LPA++T + +F+ + G++EVR++ E+K P I FV++E
Sbjct: 153 PAPPN--NILFIQNLPAETTSMMLQILFQQYPGFREVRMI--EAK-----PGI-AFVEYE 202
Query: 107 NPACAATALSALQGYRMDEDDP 128
+ + + A+ ALQG+++ +P
Sbjct: 203 DDSQSMVAMQALQGFKITPYNP 224
>sp|B8AM21|RU2B_ORYSI U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
indica GN=OsI_11177 PE=3 SV=1
Length = 232
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 52/82 (63%), Gaps = 10/82 (12%)
Query: 47 PLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFE 106
P PP+ + L+++ LPA++T + +F+ + G++EVR++ E+K P I FV++E
Sbjct: 153 PAPPN--NILFIQNLPAETTSMMLQILFQQYPGFREVRMI--EAK-----PGI-AFVEYE 202
Query: 107 NPACAATALSALQGYRMDEDDP 128
+ + + A+ ALQG+++ +P
Sbjct: 203 DDSQSMVAMQALQGFKITPYNP 224
>sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana
GN=U2B'' PE=1 SV=1
Length = 232
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 12/87 (13%)
Query: 42 GHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILC 101
G ET+P ++ L+++ LP ++T + +F + G+KE+R++ P I
Sbjct: 150 GQETMP----PNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMI-------DAKPGI-A 197
Query: 102 FVDFENPACAATALSALQGYRMDEDDP 128
FV++E+ A+ A+ LQG+++ +P
Sbjct: 198 FVEYEDDVQASIAMQPLQGFKITPQNP 224
>sp|Q0DKM4|RU1A_ORYSJ U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp.
japonica GN=Os05g0154800 PE=3 SV=1
Length = 253
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 11/96 (11%)
Query: 32 QLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESK 91
QLPF A + + +P ++ L+V+ LP ++T + +F + G+KEVR+V E+K
Sbjct: 160 QLPFAGAQKVMMPEIIVP---NNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMV--EAK 214
Query: 92 LRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 127
P I FV++ + A A++ LQG+++ +D+
Sbjct: 215 -----PGI-AFVEYGDEGQATAAMNHLQGFKITKDN 244
>sp|A2Y0J7|RU1A_ORYSI U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica
GN=OsI_18512 PE=3 SV=1
Length = 253
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 11/96 (11%)
Query: 32 QLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESK 91
QLPF A + + +P ++ L+V+ LP ++T + +F + G+KEVR+V E+K
Sbjct: 160 QLPFAGAQKVMMPEIIVP---NNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMV--EAK 214
Query: 92 LRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 127
P I FV++ + A A++ LQG+++ +D+
Sbjct: 215 -----PGI-AFVEYGDEGQATAAMNHLQGFKITKDN 244
>sp|Q07655|WHI4_YEAST Protein WHI4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=WHI4 PE=1 SV=1
Length = 649
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 13/109 (11%)
Query: 49 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLI---LCFVDF 105
PP +TLYV LP D+T++E+ +F G++ + K + G+ +CFV+F
Sbjct: 530 PP--CNTLYVGNLPPDATEQELRQLFSNQQGFRRLSFRNKMNSHGHGNGHGHGPICFVEF 587
Query: 106 ENPACAATALSALQGYRMDEDDP---DSKFLRLQFSRNPGPRSVFGARG 151
E+ + A AL+ L G ++ P + +RL FS+NP G RG
Sbjct: 588 EDVSFATRALAELYGSQLPHPRPSLNNKGGIRLSFSKNP-----LGVRG 631
>sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1
SV=3
Length = 282
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 10/79 (12%)
Query: 49 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENP 108
PP+ L++ LP ++ + ++ +F F G+KEVRLV + FV+F+N
Sbjct: 205 PPN--HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHD--------IAFVEFDNE 254
Query: 109 ACAATALSALQGYRMDEDD 127
A A ALQG+++ +++
Sbjct: 255 VQAGAARDALQGFKITQNN 273
>sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2
PE=2 SV=1
Length = 225
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 39 ARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPL 98
A P + PP+ L++ LP ++ + ++ +F F G+KEVRLV
Sbjct: 138 AAPNPQVPDYPPN--YILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHD------- 188
Query: 99 ILCFVDFENPACAATALSALQGYRM 123
+ FV+FEN A A ALQG+++
Sbjct: 189 -IAFVEFENDGQAGAARDALQGFKI 212
>sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=2
SV=1
Length = 282
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 10/79 (12%)
Query: 49 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENP 108
PP+ L++ LP ++ + ++ +F F G+KEVRLV + FV+F+N
Sbjct: 205 PPN--HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHD--------IAFVEFDNE 254
Query: 109 ACAATALSALQGYRMDEDD 127
A A ALQG+++ +++
Sbjct: 255 VQAGAARDALQGFKITQNN 273
>sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2
SV=1
Length = 282
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 10/79 (12%)
Query: 49 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENP 108
PP+ L++ LP ++ + ++ +F F G+KEVRLV + FV+F+N
Sbjct: 205 PPN--HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHD--------IAFVEFDNE 254
Query: 109 ACAATALSALQGYRMDEDD 127
A A ALQG+++ +++
Sbjct: 255 VQAGAARDALQGFKITQNN 273
>sp|Q8H1S6|RU2B2_ARATH U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana
GN=At1g06960 PE=1 SV=1
Length = 229
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 49/87 (56%), Gaps = 12/87 (13%)
Query: 42 GHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILC 101
G +T+P ++ L++ LP ++ + +F + G+KE+R++ + + G +
Sbjct: 147 GQDTMP----PNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMI----EAKPG----IA 194
Query: 102 FVDFENPACAATALSALQGYRMDEDDP 128
FV++E+ ++ A+ ALQG+++ +P
Sbjct: 195 FVEYEDDVQSSMAMQALQGFKITPQNP 221
>sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2
PE=1 SV=1
Length = 225
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 49 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENP 108
PP+ L++ LP ++ + ++ +F F G+KEVRLV + FV+FEN
Sbjct: 148 PPNY--ILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHD--------IAFVEFEND 197
Query: 109 ACAATALSALQGYRM 123
A A ALQG+++
Sbjct: 198 GQAGAARDALQGFKI 212
>sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=2
SV=3
Length = 287
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 10/79 (12%)
Query: 49 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENP 108
PP+ L++ LP ++ + ++ +F F G+KEVRLV + FV+F+N
Sbjct: 210 PPN--HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHD--------IAFVEFDNE 259
Query: 109 ACAATALSALQGYRMDEDD 127
A A ALQG+++ +++
Sbjct: 260 VQAGAARDALQGFKITQNN 278
>sp|Q9JLI8|SART3_MOUSE Squamous cell carcinoma antigen recognized by T-cells 3 OS=Mus
musculus GN=Sart3 PE=2 SV=1
Length = 962
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 17/110 (15%)
Query: 56 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 115
L++ GLP TK E+ I + K++RLV R G P L +V++EN + A+ A+
Sbjct: 803 LFISGLPFSCTKEELEDICKAHGTVKDLRLVTN----RAGKPKGLAYVEYENESQASQAV 858
Query: 116 SALQGYRMDED-------DPDSKFL--RLQFSRNPG----PRSVFGARGR 152
+ G + E+ +P + + + + PG PR ++GARG+
Sbjct: 859 MKMDGMTIRENVIKVAISNPPQRKVPEKPEVRTAPGAPMLPRQMYGARGK 908
>sp|P0CR16|MRD1_CRYNJ Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=MRD1 PE=3 SV=1
Length = 769
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 44 ETLPLPPD----ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLI 99
E+LP PD A STL+++GL +T + + G+ R+ +K R G+ L
Sbjct: 521 ESLPEQPDPTDEAGSTLFLKGLNFTTTTPHLQTVLSHIPGFSFARVQMKPDPKRPGEKLS 580
Query: 100 L--CFVDFENPACAATALSALQGYRMDEDDPDSKF 132
+ FV F+ A AL AL+G+ +D + KF
Sbjct: 581 MGYGFVGFKTKEAATKALKALEGFEIDGKSLEVKF 615
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLI--LCFVDFENPAC 110
S+ + V+ LP ++TK++V +F + K +RL K G F++F
Sbjct: 639 STKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHTE 698
Query: 111 AATALSALQ 119
AA A+ AL+
Sbjct: 699 AARAMEALK 707
>sp|P0CR17|MRD1_CRYNB Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=MRD1 PE=3 SV=1
Length = 769
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 44 ETLPLPPD----ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLI 99
E+LP PD A STL+++GL +T + + G+ R+ +K R G+ L
Sbjct: 521 ESLPEQPDPTDEAGSTLFLKGLNFTTTTPHLQTVLSHIPGFSFARVQMKPDPKRPGEKLS 580
Query: 100 L--CFVDFENPACAATALSALQGYRMDEDDPDSKF 132
+ FV F+ A AL AL+G+ +D + KF
Sbjct: 581 MGYGFVGFKTKEAATKALKALEGFEIDGKSLEVKF 615
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLI--LCFVDFENPAC 110
S+ + V+ LP ++TK++V +F + K +RL K G F++F
Sbjct: 639 STKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHTE 698
Query: 111 AATALSALQ 119
AA A+ AL+
Sbjct: 699 AARAMEALK 707
>sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa
PE=2 SV=1
Length = 282
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 49 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENP 108
PP+ L++ LP ++ + ++ +F F G+KEVRLV + FV+F+N
Sbjct: 205 PPN--HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHD--------IAFVEFDNE 254
Query: 109 ACAATALSALQGYRMDEDD 127
A A +LQG+++ + +
Sbjct: 255 VQAGAARESLQGFKITQSN 273
>sp|Q5BGA9|MRD1_EMENI Multiple RNA-binding domain-containing protein 1 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=mrd1 PE=3 SV=1
Length = 819
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLIL--CFVDFENPA 109
A++TL+++ L +T + + FRP G+ R+ K G L + F DF+ A
Sbjct: 590 ATATLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADFKTKA 649
Query: 110 CAATALSALQGYRMD 124
A AL+ + GY +D
Sbjct: 650 QAQAALAVMNGYTLD 664
>sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum
GN=snrpb2 PE=3 SV=1
Length = 241
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 49 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENP 108
PP+ TL+VE LP ++ +F F G+KEV +V ESK +G + F++FE+
Sbjct: 164 PPN--KTLFVENLPDKCDSMMLSMLFSQFQGFKEVHMV--ESK-KG-----IAFIEFEDE 213
Query: 109 ACAATALSALQGYRMDEDDP 128
+ A++ LQ +++ + P
Sbjct: 214 IKSGFAMTNLQHFKVTPEKP 233
>sp|Q3ZBP3|RBMS1_BOVIN RNA-binding motif, single-stranded-interacting protein 1 OS=Bos
taurus GN=RBMS1 PE=2 SV=1
Length = 403
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 14/91 (15%)
Query: 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKES--KLRGGDPLILCFVDFENPA 109
+ + LY+ GLP ++T +++ + +P+ + ++ ++ K +G FVDF++PA
Sbjct: 60 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKG-----YGFVDFDSPA 114
Query: 110 CAATALSAL-------QGYRMDEDDPDSKFL 133
A A+SAL Q + E DP + ++
Sbjct: 115 AAQKAVSALKASGVQAQMAKQQEQDPTNLYI 145
>sp|Q91W59|RBMS1_MOUSE RNA-binding motif, single-stranded-interacting protein 1 OS=Mus
musculus GN=Rbms1 PE=2 SV=1
Length = 403
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 14/91 (15%)
Query: 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKES--KLRGGDPLILCFVDFENPA 109
+ + LY+ GLP ++T +++ + +P+ + ++ ++ K +G FVDF++PA
Sbjct: 60 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKG-----YGFVDFDSPA 114
Query: 110 CAATALSAL-------QGYRMDEDDPDSKFL 133
A A+SAL Q + E DP + ++
Sbjct: 115 AAQKAVSALKANGVQAQMAKQQEQDPTNLYI 145
>sp|Q5PQP1|RBMS1_RAT RNA-binding motif, single-stranded-interacting protein 1 OS=Rattus
norvegicus GN=Rbms1 PE=2 SV=1
Length = 403
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 14/91 (15%)
Query: 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKES--KLRGGDPLILCFVDFENPA 109
+ + LY+ GLP ++T +++ + +P+ + ++ ++ K +G FVDF++PA
Sbjct: 60 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKG-----YGFVDFDSPA 114
Query: 110 CAATALSAL-------QGYRMDEDDPDSKFL 133
A A+SAL Q + E DP + ++
Sbjct: 115 AAQKAVSALKASGVQAQMAKQQEQDPTNLYI 145
>sp|O13620|MRD1_SCHPO Multiple RNA-binding domain-containing protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrd1 PE=3 SV=1
Length = 833
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLIL--CFVDFENPAC 110
++T+YV+ L + + E +F+P GY + K R G L + FV+F++ A
Sbjct: 618 TATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKAS 677
Query: 111 AATALSALQGYRMD 124
A A+ A+ G+ +D
Sbjct: 678 AVAAMHAMNGFVLD 691
>sp|Q4WJT7|MRD1_ASPFU Multiple RNA-binding domain-containing protein 1 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=mrd1 PE=3 SV=1
Length = 825
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 50 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLIL--CFVDFEN 107
P +STL+V+ L +T +F+P G+ R+ K R G L + FVDF
Sbjct: 593 PVVTSTLFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRT 652
Query: 108 PACAATALSALQGYRMDE 125
A A AL+A+ GY++D+
Sbjct: 653 KAQAQAALAAMDGYKLDQ 670
>sp|Q15020|SART3_HUMAN Squamous cell carcinoma antigen recognized by T-cells 3 OS=Homo
sapiens GN=SART3 PE=1 SV=1
Length = 963
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 56 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 115
L++ GLP TK E+ I + K++RLV R G P L +V++EN + A+ A+
Sbjct: 803 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTN----RAGKPKGLAYVEYENESQASQAV 858
Query: 116 SALQGYRMDED 126
+ G + E+
Sbjct: 859 MKMDGMTIKEN 869
>sp|Q5REG1|SART3_PONAB Squamous cell carcinoma antigen recognized by T-cells 3 OS=Pongo
abelii GN=SART3 PE=2 SV=1
Length = 981
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 56 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 115
L++ GLP TK E+ I + K++RLV R G P L +V++EN + A+ A+
Sbjct: 821 LFISGLPFSCTKEELEEICKAHGTVKDLRLVTN----RAGKPKGLAYVEYENESQASQAV 876
Query: 116 SALQGYRMDED 126
+ G + E+
Sbjct: 877 MKMDGMTIKEN 887
>sp|P29558|RBMS1_HUMAN RNA-binding motif, single-stranded-interacting protein 1 OS=Homo
sapiens GN=RBMS1 PE=1 SV=3
Length = 406
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 14/91 (15%)
Query: 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKES--KLRGGDPLILCFVDFENPA 109
+ + LY+ GLP +T +++ + +P+ + ++ ++ K +G FVDF++PA
Sbjct: 60 SKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKG-----YGFVDFDSPA 114
Query: 110 CAATALSAL-------QGYRMDEDDPDSKFL 133
A A+SAL Q + E DP + ++
Sbjct: 115 AAQKAVSALKASGVQAQMAKQQEQDPTNLYI 145
>sp|Q7SXP4|SRS1A_DANRE Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a
PE=2 SV=2
Length = 257
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 56 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 115
+YV LP D ++V +F + +++ L RGG P FV+FE+P A A+
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDL----KNRRGGPPF--AFVEFEDPRDAEDAV 70
Query: 116 SALQGYRMDEDDPDSKFLRLQFSRN 140
A GY D D LR++F R+
Sbjct: 71 YARDGY-----DYDGYRLRVEFPRS 90
>sp|Q8ITY4|PM14_CAEEL Pre-mRNA branch site p14-like protein OS=Caenorhabditis elegans
GN=C50D2.5 PE=3 SV=2
Length = 138
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 48 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFEN 107
LPP+ + LY++ LP T E+ IF F +++R V ++ RG FV +E+
Sbjct: 13 LPPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIR-VGNTAETRG-----TAFVVYED 66
Query: 108 PACAATALSALQGYRM 123
A TA L GY +
Sbjct: 67 IFDAKTACEHLSGYNV 82
>sp|P36629|U2AF2_SCHPO Splicing factor U2AF 59 kDa subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=prp2 PE=1 SV=1
Length = 517
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 51 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPAC 110
D+ +Y+ LP + + +V + +PF +L+ + G CF +F+NP+
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLI---KNIADGSSKGFCFCEFKNPSD 363
Query: 111 AATALSALQG 120
A A+S L G
Sbjct: 364 AEVAISGLDG 373
>sp|O59784|MDE7_SCHPO RNA-binding protein mde7 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mde7 PE=4 SV=1
Length = 761
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAAT 113
+T+YV L ++++ F GY+ + K++G P+ CFV+FE AA
Sbjct: 602 NTIYVGNLSNPDQEKKLRLAFSKEKGYRRLCF-----KIKGNSPM--CFVEFEEVCHAAK 654
Query: 114 ALSALQGYRMDEDDPDSKFLRLQFSRNP-GPRS 145
A+ +QG + DD +RL +S+NP G RS
Sbjct: 655 AMEKMQGAAL--DDKIKGGIRLSYSKNPLGVRS 685
>sp|P43332|SNRPA_DROME U1 small nuclear ribonucleoprotein A OS=Drosophila melanogaster
GN=snf PE=1 SV=1
Length = 216
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 49 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENP 108
PP+ L++ LP ++ + ++ +F F G+KEVRLV + FV+F
Sbjct: 139 PPN--QILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHD--------IAFVEFTTE 188
Query: 109 ACAATALSALQGYRM 123
+ A ALQG+++
Sbjct: 189 LQSNAAKEALQGFKI 203
>sp|Q6DII2|SRSF1_XENTR Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis
GN=srsf1 PE=2 SV=1
Length = 267
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 56 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 115
+YV LP D +++ +F + +++ L RGG P FV+FE+P A A+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDL----KNRRGGPPF--AFVEFEDPRDAEDAV 71
Query: 116 SALQGYRMDEDDPDSKFLRLQFSRN 140
GY D D LR++F R+
Sbjct: 72 YGRDGY-----DYDGYRLRVEFPRS 91
>sp|Q6NYA0|SRS1B_DANRE Serine/arginine-rich splicing factor 1B OS=Danio rerio GN=srsf1b
PE=2 SV=1
Length = 245
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 56 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 115
+YV LP D ++V +F + +++ L RGG P FV+FE+P A A+
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDL----KNRRGGPPF--AFVEFEDPRDAEDAV 70
Query: 116 SALQGYRMDEDDPDSKFLRLQF 137
GY D D LR++F
Sbjct: 71 YGRDGY-----DYDGYRLRVEF 87
>sp|Q5R7H2|SRSF1_PONAB Serine/arginine-rich splicing factor 1 OS=Pongo abelii GN=SRSF1
PE=2 SV=3
Length = 248
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 56 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 115
+YV LP D +++ +F + +++ L RGG P FV+FE+P A A+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDL----KNRRGGPPF--AFVEFEDPRDAEDAV 71
Query: 116 SALQGYRMDEDDPDSKFLRLQF 137
GY D D LR++F
Sbjct: 72 YGRDGY-----DYDGYRLRVEF 88
>sp|Q3YLA6|SRSF1_PIG Serine/arginine-rich splicing factor 1 OS=Sus scrofa GN=SRSF1 PE=2
SV=3
Length = 248
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 56 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 115
+YV LP D +++ +F + +++ L RGG P FV+FE+P A A+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDL----KNRRGGPPF--AFVEFEDPRDAEDAV 71
Query: 116 SALQGYRMDEDDPDSKFLRLQF 137
GY D D LR++F
Sbjct: 72 YGRDGY-----DYDGYRLRVEF 88
>sp|Q6PDM2|SRSF1_MOUSE Serine/arginine-rich splicing factor 1 OS=Mus musculus GN=Srsf1
PE=1 SV=3
Length = 248
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 56 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 115
+YV LP D +++ +F + +++ L RGG P FV+FE+P A A+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDL----KNRRGGPPF--AFVEFEDPRDAEDAV 71
Query: 116 SALQGYRMDEDDPDSKFLRLQF 137
GY D D LR++F
Sbjct: 72 YGRDGY-----DYDGYRLRVEF 88
>sp|Q07955|SRSF1_HUMAN Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1
PE=1 SV=2
Length = 248
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 56 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 115
+YV LP D +++ +F + +++ L RGG P FV+FE+P A A+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDL----KNRRGGPPF--AFVEFEDPRDAEDAV 71
Query: 116 SALQGYRMDEDDPDSKFLRLQF 137
GY D D LR++F
Sbjct: 72 YGRDGY-----DYDGYRLRVEF 88
>sp|Q0VCY7|SRSF1_BOVIN Serine/arginine-rich splicing factor 1 OS=Bos taurus GN=SRSF1 PE=2
SV=1
Length = 248
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 56 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 115
+YV LP D +++ +F + +++ L RGG P FV+FE+P A A+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDL----KNRRGGPPF--AFVEFEDPRDAEDAV 71
Query: 116 SALQGYRMDEDDPDSKFLRLQF 137
GY D D LR++F
Sbjct: 72 YGRDGY-----DYDGYRLRVEF 88
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis
elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 46 LPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDF 105
+P +YV LP D ++EV IF + IK ++ G FV+F
Sbjct: 1 MPRGGSEDQKVYVGNLPGDVREKEVEDIFHKY-------GRIKYVDIKSGRGPAFAFVEF 53
Query: 106 ENPACAATALSALQGYRMDEDDPDSKFLRLQFS 138
E+ A A+ A GY D + +R++F+
Sbjct: 54 EDHRDAEDAVRARDGYEF-----DGRRIRVEFT 81
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,810,337
Number of Sequences: 539616
Number of extensions: 2292904
Number of successful extensions: 5859
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 138
Number of HSP's that attempted gapping in prelim test: 5734
Number of HSP's gapped (non-prelim): 213
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)