Query 031746
Match_columns 153
No_of_seqs 155 out of 1739
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 04:46:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031746.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031746hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 5E-21 1.1E-25 135.7 13.9 81 53-141 34-114 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 4.1E-19 9E-24 141.6 12.2 84 53-144 269-352 (352)
3 TIGR01659 sex-lethal sex-letha 99.8 2.3E-18 5E-23 137.6 10.7 82 51-140 105-186 (346)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 2.3E-18 5E-23 137.3 10.4 81 53-141 3-83 (352)
5 KOG0121 Nuclear cap-binding pr 99.8 1.8E-18 3.9E-23 117.9 7.5 79 53-139 36-114 (153)
6 TIGR01659 sex-lethal sex-letha 99.8 5.9E-18 1.3E-22 135.3 10.4 83 53-141 193-275 (346)
7 KOG0122 Translation initiation 99.7 6.7E-18 1.5E-22 126.1 9.2 84 50-141 186-269 (270)
8 PF00076 RRM_1: RNA recognitio 99.7 2.1E-17 4.5E-22 102.2 8.3 67 56-126 1-67 (70)
9 TIGR01645 half-pint poly-U bin 99.7 1.7E-17 3.7E-22 139.9 9.9 82 53-142 204-285 (612)
10 KOG0107 Alternative splicing f 99.7 1.8E-17 4E-22 118.4 8.5 78 53-143 10-87 (195)
11 KOG0117 Heterogeneous nuclear 99.7 1.3E-16 2.7E-21 127.8 10.4 91 41-140 73-163 (506)
12 KOG0125 Ataxin 2-binding prote 99.7 3.8E-16 8.1E-21 121.0 9.4 80 51-140 94-173 (376)
13 KOG0113 U1 small nuclear ribon 99.7 7.3E-16 1.6E-20 118.1 10.9 85 47-139 95-179 (335)
14 TIGR01645 half-pint poly-U bin 99.7 3.5E-16 7.5E-21 132.1 10.0 81 52-140 106-186 (612)
15 PLN03120 nucleic acid binding 99.7 6.4E-16 1.4E-20 117.8 10.0 76 53-140 4-79 (260)
16 KOG0130 RNA-binding protein RB 99.7 4.9E-16 1.1E-20 107.0 7.9 83 53-143 72-154 (170)
17 TIGR01648 hnRNP-R-Q heterogene 99.7 8.3E-16 1.8E-20 129.4 10.5 80 52-139 57-136 (578)
18 PF14259 RRM_6: RNA recognitio 99.6 1.5E-15 3.1E-20 94.5 8.8 67 56-126 1-67 (70)
19 TIGR01622 SF-CC1 splicing fact 99.6 1.6E-15 3.4E-20 125.0 11.6 80 53-140 186-265 (457)
20 KOG0117 Heterogeneous nuclear 99.6 3.4E-16 7.4E-21 125.3 7.3 104 22-142 229-332 (506)
21 KOG0126 Predicted RNA-binding 99.6 2.8E-17 6.1E-22 118.2 0.7 79 53-139 35-113 (219)
22 KOG0105 Alternative splicing f 99.6 6.1E-16 1.3E-20 111.7 7.4 78 53-141 6-83 (241)
23 TIGR01642 U2AF_lg U2 snRNP aux 99.6 2.2E-15 4.8E-20 125.6 11.5 81 52-140 294-374 (509)
24 TIGR01628 PABP-1234 polyadenyl 99.6 1.5E-15 3.2E-20 128.3 10.5 78 55-140 2-79 (562)
25 KOG0149 Predicted RNA-binding 99.6 1.1E-15 2.4E-20 113.8 7.1 79 53-140 12-90 (247)
26 KOG4207 Predicted splicing fac 99.6 1.5E-15 3.4E-20 111.3 7.4 80 53-140 13-92 (256)
27 TIGR01628 PABP-1234 polyadenyl 99.6 2.7E-15 5.9E-20 126.7 9.4 81 52-141 284-364 (562)
28 TIGR01622 SF-CC1 splicing fact 99.6 5E-15 1.1E-19 122.1 10.1 80 52-140 88-167 (457)
29 KOG0114 Predicted RNA-binding 99.6 9.1E-15 2E-19 96.5 9.1 82 47-139 12-93 (124)
30 KOG0131 Splicing factor 3b, su 99.6 2E-15 4.4E-20 108.6 6.3 83 49-139 5-87 (203)
31 PLN03213 repressor of silencin 99.6 4.3E-15 9.3E-20 120.7 8.8 76 53-140 10-87 (759)
32 KOG0145 RNA-binding protein EL 99.6 4.4E-15 9.6E-20 112.3 7.7 81 53-141 41-121 (360)
33 PLN03121 nucleic acid binding 99.6 1.1E-14 2.4E-19 109.6 9.9 75 53-139 5-79 (243)
34 TIGR01648 hnRNP-R-Q heterogene 99.6 1.8E-14 4E-19 121.3 11.4 74 53-142 233-308 (578)
35 KOG0108 mRNA cleavage and poly 99.6 6.2E-15 1.3E-19 120.2 8.1 81 54-142 19-99 (435)
36 smart00362 RRM_2 RNA recogniti 99.6 2.7E-14 5.9E-19 87.3 8.7 67 55-126 1-67 (72)
37 COG0724 RNA-binding proteins ( 99.6 2.3E-14 4.9E-19 108.1 9.6 79 53-139 115-193 (306)
38 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 2.3E-14 4.9E-19 119.3 10.4 76 52-140 274-350 (481)
39 KOG0148 Apoptosis-promoting RN 99.6 1.2E-14 2.7E-19 110.2 7.9 88 53-148 62-149 (321)
40 KOG0111 Cyclophilin-type pepti 99.5 5.4E-15 1.2E-19 109.5 4.9 88 49-144 6-93 (298)
41 KOG0148 Apoptosis-promoting RN 99.5 4.5E-14 9.8E-19 107.2 9.0 74 53-140 164-237 (321)
42 smart00360 RRM RNA recognition 99.5 5.9E-14 1.3E-18 85.4 8.0 70 58-135 1-70 (71)
43 KOG0144 RNA-binding protein CU 99.5 8.2E-14 1.8E-18 111.5 10.3 86 53-144 34-120 (510)
44 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 9.3E-14 2E-18 115.7 10.2 83 53-140 394-479 (481)
45 KOG0145 RNA-binding protein EL 99.5 2.2E-13 4.8E-18 103.2 11.0 81 53-141 278-358 (360)
46 KOG0109 RNA-binding protein LA 99.5 2.2E-14 4.7E-19 109.9 4.9 72 54-141 3-74 (346)
47 cd00590 RRM RRM (RNA recogniti 99.5 5.3E-13 1.1E-17 81.9 9.6 74 55-137 1-74 (74)
48 KOG0144 RNA-binding protein CU 99.5 6.4E-14 1.4E-18 112.1 5.3 87 53-146 124-211 (510)
49 KOG0146 RNA-binding protein ET 99.4 2.3E-13 5E-18 103.4 6.0 83 51-141 283-365 (371)
50 KOG0415 Predicted peptidyl pro 99.4 9.4E-13 2E-17 103.4 5.9 79 53-139 239-317 (479)
51 smart00361 RRM_1 RNA recogniti 99.4 3.5E-12 7.6E-17 79.6 7.4 63 67-135 2-69 (70)
52 KOG0147 Transcriptional coacti 99.4 1.1E-12 2.3E-17 107.6 6.3 78 54-139 279-356 (549)
53 KOG0124 Polypyrimidine tract-b 99.4 8.5E-13 1.9E-17 104.1 4.9 78 53-138 113-190 (544)
54 KOG0127 Nucleolar protein fibr 99.4 2.8E-12 6E-17 105.4 8.0 80 53-141 117-196 (678)
55 PF13893 RRM_5: RNA recognitio 99.3 1E-11 2.2E-16 74.0 8.0 56 70-138 1-56 (56)
56 KOG4206 Spliceosomal protein s 99.3 6.1E-12 1.3E-16 93.4 8.4 78 53-141 9-90 (221)
57 TIGR01642 U2AF_lg U2 snRNP aux 99.3 8.6E-12 1.9E-16 104.1 9.5 73 51-138 173-257 (509)
58 KOG0127 Nucleolar protein fibr 99.3 5.9E-12 1.3E-16 103.5 8.2 80 52-139 291-376 (678)
59 KOG0131 Splicing factor 3b, su 99.3 6.9E-12 1.5E-16 90.5 6.1 85 53-145 96-181 (203)
60 KOG0132 RNA polymerase II C-te 99.3 1.4E-11 3.1E-16 104.5 7.7 79 53-145 421-499 (894)
61 KOG4212 RNA-binding protein hn 99.3 2.1E-11 4.7E-16 98.1 8.0 78 53-139 44-122 (608)
62 KOG4208 Nucleolar RNA-binding 99.2 2.8E-11 6.1E-16 88.8 7.4 80 53-140 49-129 (214)
63 KOG1457 RNA binding protein (c 99.2 4.9E-10 1.1E-14 83.5 11.9 88 50-141 31-118 (284)
64 KOG0123 Polyadenylate-binding 99.2 8.9E-11 1.9E-15 94.8 8.3 75 56-141 79-153 (369)
65 KOG0146 RNA-binding protein ET 99.2 5.5E-11 1.2E-15 90.6 5.9 86 53-144 19-104 (371)
66 KOG0109 RNA-binding protein LA 99.2 3.5E-11 7.5E-16 92.5 4.5 72 53-140 78-149 (346)
67 KOG0124 Polypyrimidine tract-b 99.1 5.5E-11 1.2E-15 94.0 4.3 82 53-142 210-291 (544)
68 KOG0110 RNA-binding protein (R 99.1 2.1E-10 4.5E-15 96.7 7.6 81 54-139 516-596 (725)
69 KOG0153 Predicted RNA-binding 99.1 4.7E-10 1E-14 88.0 8.1 74 53-140 228-302 (377)
70 KOG0110 RNA-binding protein (R 99.1 1.4E-10 2.9E-15 97.8 4.5 80 53-140 613-692 (725)
71 KOG0533 RRM motif-containing p 99.1 8.2E-10 1.8E-14 84.0 8.3 80 53-141 83-162 (243)
72 KOG4212 RNA-binding protein hn 99.0 1.7E-09 3.6E-14 87.4 9.3 73 53-138 536-608 (608)
73 KOG4209 Splicing factor RNPS1, 99.0 1E-09 2.2E-14 83.4 7.7 80 53-141 101-180 (231)
74 KOG0123 Polyadenylate-binding 99.0 1.5E-09 3.1E-14 87.8 8.4 74 54-141 2-75 (369)
75 KOG4661 Hsp27-ERE-TATA-binding 99.0 8.9E-10 1.9E-14 91.5 7.2 81 53-141 405-485 (940)
76 KOG4205 RNA-binding protein mu 99.0 1.4E-09 3.1E-14 85.6 7.5 80 53-141 97-176 (311)
77 KOG4660 Protein Mei2, essentia 98.9 1E-09 2.3E-14 90.4 5.4 68 51-126 73-140 (549)
78 KOG4205 RNA-binding protein mu 98.9 1.7E-09 3.6E-14 85.3 5.7 62 52-116 5-66 (311)
79 KOG0106 Alternative splicing f 98.9 1.5E-09 3.2E-14 81.2 4.9 71 54-140 2-72 (216)
80 KOG0116 RasGAP SH3 binding pro 98.9 5.1E-09 1.1E-13 85.4 8.2 81 51-140 286-366 (419)
81 KOG0151 Predicted splicing reg 98.9 5.9E-09 1.3E-13 88.2 8.3 82 53-139 174-255 (877)
82 KOG4454 RNA binding protein (R 98.9 1.1E-09 2.4E-14 81.3 2.7 69 53-126 9-77 (267)
83 PF04059 RRM_2: RNA recognitio 98.8 6E-08 1.3E-12 64.1 9.4 84 54-141 2-87 (97)
84 KOG1548 Transcription elongati 98.8 3.2E-08 7E-13 77.8 9.1 79 53-140 134-220 (382)
85 KOG1457 RNA binding protein (c 98.8 1.1E-08 2.3E-13 76.4 4.5 69 51-126 208-276 (284)
86 KOG0226 RNA-binding proteins [ 98.7 2.9E-08 6.3E-13 75.2 4.5 77 53-137 190-266 (290)
87 KOG1190 Polypyrimidine tract-b 98.6 5.7E-07 1.2E-11 72.3 10.9 76 53-141 297-373 (492)
88 KOG4206 Spliceosomal protein s 98.6 2E-07 4.3E-12 69.5 7.6 76 52-139 145-220 (221)
89 KOG0120 Splicing factor U2AF, 98.5 8.7E-08 1.9E-12 79.4 3.7 80 53-140 289-368 (500)
90 KOG0147 Transcriptional coacti 98.4 1.5E-07 3.3E-12 77.8 3.3 80 51-139 177-256 (549)
91 PF11608 Limkain-b1: Limkain b 98.3 5.1E-06 1.1E-10 53.2 7.6 70 54-140 3-76 (90)
92 KOG1995 Conserved Zn-finger pr 98.3 7.4E-07 1.6E-11 70.5 4.6 82 52-141 65-154 (351)
93 KOG1190 Polypyrimidine tract-b 98.3 2.1E-06 4.5E-11 69.2 6.8 77 53-140 414-490 (492)
94 KOG4210 Nuclear localization s 98.2 2E-06 4.3E-11 67.4 5.1 82 53-143 184-266 (285)
95 KOG4849 mRNA cleavage factor I 98.2 1.9E-06 4E-11 68.3 3.7 72 54-128 81-154 (498)
96 KOG4211 Splicing factor hnRNP- 98.1 1E-05 2.2E-10 66.5 7.6 74 53-138 10-83 (510)
97 KOG1456 Heterogeneous nuclear 98.1 1.9E-05 4.2E-10 63.2 8.5 78 53-141 120-199 (494)
98 PF08777 RRM_3: RNA binding mo 98.1 1.4E-05 3E-10 53.7 6.2 59 54-121 2-60 (105)
99 KOG2314 Translation initiation 98.1 1.3E-05 2.9E-10 66.9 7.3 77 53-137 58-140 (698)
100 KOG4307 RNA binding protein RB 98.1 3.2E-05 7E-10 66.1 9.6 77 53-137 866-943 (944)
101 KOG0106 Alternative splicing f 98.0 7.4E-06 1.6E-10 61.4 4.1 71 52-138 98-168 (216)
102 COG5175 MOT2 Transcriptional r 97.9 5.1E-05 1.1E-09 60.1 7.1 81 54-139 115-201 (480)
103 KOG2416 Acinus (induces apopto 97.9 2.6E-05 5.6E-10 65.6 5.6 78 52-139 443-520 (718)
104 KOG4211 Splicing factor hnRNP- 97.8 0.00019 4.2E-09 59.1 8.7 68 53-125 103-171 (510)
105 KOG1855 Predicted RNA-binding 97.7 6.1E-05 1.3E-09 61.1 5.4 69 52-120 230-308 (484)
106 KOG1456 Heterogeneous nuclear 97.7 0.00033 7.2E-09 56.2 9.3 77 52-141 286-363 (494)
107 KOG3152 TBP-binding protein, a 97.7 3.7E-05 8E-10 58.6 3.0 75 53-127 74-157 (278)
108 KOG0105 Alternative splicing f 97.7 0.0023 5E-08 47.0 12.1 63 53-125 115-177 (241)
109 KOG0112 Large RNA-binding prot 97.7 8.5E-05 1.8E-09 65.0 5.5 77 53-141 455-531 (975)
110 KOG0129 Predicted RNA-binding 97.6 0.0003 6.5E-09 58.3 7.9 67 52-119 258-327 (520)
111 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00019 4.1E-09 42.2 4.7 52 54-115 2-53 (53)
112 PF08675 RNA_bind: RNA binding 97.5 0.00088 1.9E-08 42.9 7.5 55 53-119 9-63 (87)
113 KOG2193 IGF-II mRNA-binding pr 97.5 8.7E-05 1.9E-09 60.4 3.0 79 54-145 2-80 (584)
114 KOG0129 Predicted RNA-binding 97.3 0.00092 2E-08 55.5 7.1 66 48-116 365-431 (520)
115 KOG0120 Splicing factor U2AF, 97.2 0.0013 2.9E-08 55.0 7.4 62 70-137 426-488 (500)
116 KOG0128 RNA-binding protein SA 97.2 0.00021 4.5E-09 62.4 2.2 78 54-140 737-814 (881)
117 KOG1548 Transcription elongati 97.2 0.0016 3.4E-08 51.8 6.7 76 52-139 264-350 (382)
118 KOG4676 Splicing factor, argin 96.9 0.0012 2.6E-08 53.4 3.9 72 54-126 8-79 (479)
119 PF03467 Smg4_UPF3: Smg-4/UPF3 96.8 0.0034 7.3E-08 46.0 5.6 87 53-140 7-97 (176)
120 KOG4307 RNA binding protein RB 96.8 0.0033 7.1E-08 54.3 6.2 82 48-138 429-511 (944)
121 KOG0128 RNA-binding protein SA 96.8 0.0001 2.2E-09 64.1 -3.1 67 54-123 668-734 (881)
122 PF05172 Nup35_RRM: Nup53/35/4 96.7 0.01 2.2E-07 39.5 6.9 78 53-138 6-89 (100)
123 PF10309 DUF2414: Protein of u 96.7 0.0095 2.1E-07 36.1 5.9 53 54-118 6-62 (62)
124 KOG1365 RNA-binding protein Fu 96.6 0.018 4E-07 46.6 8.8 59 54-116 162-224 (508)
125 KOG1365 RNA-binding protein Fu 96.5 0.0078 1.7E-07 48.7 5.8 75 53-136 280-357 (508)
126 PF08952 DUF1866: Domain of un 96.4 0.014 3E-07 41.3 6.1 54 69-139 52-105 (146)
127 KOG0115 RNA-binding protein p5 96.3 0.0049 1.1E-07 47.3 3.5 63 54-120 32-94 (275)
128 KOG0112 Large RNA-binding prot 96.3 0.0019 4E-08 56.9 1.4 70 53-126 372-441 (975)
129 PF07576 BRAP2: BRCA1-associat 95.8 0.29 6.4E-06 33.0 10.2 69 55-128 15-84 (110)
130 KOG4660 Protein Mei2, essentia 95.8 0.019 4.2E-07 48.3 5.2 85 53-141 361-473 (549)
131 KOG2068 MOT2 transcription fac 95.7 0.0062 1.3E-07 48.3 2.0 81 54-140 78-162 (327)
132 KOG2202 U2 snRNP splicing fact 95.7 0.0057 1.2E-07 46.8 1.7 62 70-140 85-147 (260)
133 KOG4574 RNA-binding protein (c 95.4 0.013 2.8E-07 51.6 3.0 78 54-143 299-376 (1007)
134 KOG2591 c-Mpl binding protein, 95.2 0.069 1.5E-06 45.3 6.5 64 53-126 175-247 (684)
135 KOG1996 mRNA splicing factor [ 95.1 0.079 1.7E-06 41.7 6.1 63 68-137 301-363 (378)
136 KOG2253 U1 snRNP complex, subu 94.7 0.079 1.7E-06 45.6 5.6 63 53-127 40-102 (668)
137 PF04847 Calcipressin: Calcipr 94.3 0.094 2E-06 38.7 4.6 61 66-140 8-70 (184)
138 PF15023 DUF4523: Protein of u 94.0 0.21 4.5E-06 35.4 5.6 71 53-139 86-160 (166)
139 PF11767 SET_assoc: Histone ly 92.8 0.49 1.1E-05 29.0 5.4 50 64-125 11-60 (66)
140 KOG4210 Nuclear localization s 92.0 0.098 2.1E-06 41.2 1.9 70 53-125 88-157 (285)
141 PF03880 DbpA: DbpA RNA bindin 91.7 1 2.2E-05 27.9 6.0 59 63-138 11-74 (74)
142 KOG0804 Cytoplasmic Zn-finger 91.5 0.89 1.9E-05 37.8 6.9 71 53-128 74-145 (493)
143 KOG2135 Proteins containing th 91.1 0.14 3.1E-06 42.6 2.0 73 53-140 372-445 (526)
144 KOG4676 Splicing factor, argin 90.9 0.04 8.6E-07 44.8 -1.3 65 54-126 152-216 (479)
145 KOG4285 Mitotic phosphoprotein 88.8 0.76 1.7E-05 36.4 4.3 60 56-126 200-259 (350)
146 KOG2318 Uncharacterized conser 88.8 3 6.6E-05 35.9 8.0 76 51-126 172-296 (650)
147 KOG4410 5-formyltetrahydrofola 85.7 1.7 3.8E-05 34.2 4.6 48 54-109 331-378 (396)
148 KOG2193 IGF-II mRNA-binding pr 85.0 0.032 6.9E-07 45.8 -5.3 76 53-139 80-155 (584)
149 KOG4483 Uncharacterized conser 83.9 5 0.00011 33.2 6.6 55 53-117 391-446 (528)
150 KOG4454 RNA binding protein (R 82.3 0.59 1.3E-05 35.5 0.8 69 54-126 81-153 (267)
151 KOG2891 Surface glycoprotein [ 75.3 2.6 5.7E-05 33.2 2.5 71 54-124 150-248 (445)
152 PF15513 DUF4651: Domain of un 71.3 11 0.00023 22.8 3.9 22 68-89 9-30 (62)
153 COG0724 RNA-binding proteins ( 68.1 9.1 0.0002 28.0 4.0 61 52-115 224-284 (306)
154 KOG4019 Calcineurin-mediated s 64.8 5.8 0.00013 29.2 2.2 73 54-139 11-88 (193)
155 KOG2295 C2H2 Zn-finger protein 60.2 1.2 2.6E-05 38.0 -2.2 71 53-126 231-301 (648)
156 KOG4008 rRNA processing protei 56.5 7.4 0.00016 29.9 1.6 30 53-82 40-69 (261)
157 PF07292 NID: Nmi/IFP 35 domai 56.3 8.1 0.00018 25.0 1.6 22 53-74 52-73 (88)
158 PF03468 XS: XS domain; Inter 56.1 11 0.00024 25.6 2.3 49 55-109 10-67 (116)
159 COG0030 KsgA Dimethyladenosine 55.7 18 0.00039 28.2 3.7 33 54-86 96-128 (259)
160 PF11411 DNA_ligase_IV: DNA li 52.9 9 0.00019 20.5 1.1 17 63-79 19-35 (36)
161 KOG4365 Uncharacterized conser 52.9 3.3 7.1E-05 34.6 -0.8 76 55-139 5-80 (572)
162 COG0150 PurM Phosphoribosylami 52.2 3.1 6.6E-05 33.6 -1.1 48 67-121 275-322 (345)
163 KOG1295 Nonsense-mediated deca 52.0 21 0.00045 29.3 3.6 73 54-127 8-81 (376)
164 PF10567 Nab6_mRNP_bdg: RNA-re 47.4 40 0.00087 26.8 4.4 60 53-112 15-78 (309)
165 PRK00274 ksgA 16S ribosomal RN 38.3 38 0.00082 26.2 3.1 22 55-76 107-128 (272)
166 PTZ00338 dimethyladenosine tra 36.3 41 0.00088 26.6 3.0 23 55-77 103-125 (294)
167 PF04026 SpoVG: SpoVG; InterP 36.2 86 0.0019 20.0 4.0 48 79-139 2-49 (84)
168 PRK13259 regulatory protein Sp 36.1 77 0.0017 20.8 3.8 48 79-139 2-49 (94)
169 PF09707 Cas_Cas2CT1978: CRISP 35.6 83 0.0018 20.2 3.8 48 54-107 26-73 (86)
170 COG3254 Uncharacterized conser 35.5 1.3E+02 0.0029 20.1 4.8 41 69-115 28-68 (105)
171 KOG1134 Uncharacterized conser 35.0 61 0.0013 29.1 4.2 39 96-141 303-341 (728)
172 PF02714 DUF221: Domain of unk 34.6 39 0.00086 26.5 2.8 22 101-122 1-22 (325)
173 TIGR00755 ksgA dimethyladenosi 34.2 53 0.0012 24.9 3.3 24 55-78 96-119 (253)
174 PF07237 DUF1428: Protein of u 33.9 1.4E+02 0.0031 19.8 5.4 50 69-118 24-85 (103)
175 PRK11558 putative ssRNA endonu 33.9 66 0.0014 21.2 3.2 49 54-108 28-76 (97)
176 smart00650 rADc Ribosomal RNA 33.4 62 0.0013 22.8 3.4 23 54-76 78-100 (169)
177 PRK02302 hypothetical protein; 32.1 1.4E+02 0.0031 19.3 5.0 39 73-123 22-60 (89)
178 PRK11634 ATP-dependent RNA hel 31.4 2.5E+02 0.0055 24.7 7.4 68 54-139 487-561 (629)
179 PHA01632 hypothetical protein 31.1 50 0.0011 19.5 2.0 20 57-76 20-39 (64)
180 PF00398 RrnaAD: Ribosomal RNA 31.0 31 0.00067 26.5 1.6 23 53-75 97-119 (262)
181 PF03439 Spt5-NGN: Early trans 30.7 75 0.0016 20.0 3.1 26 97-122 43-68 (84)
182 PRK02886 hypothetical protein; 30.5 1.5E+02 0.0033 19.1 5.1 39 73-123 20-58 (87)
183 PF09902 DUF2129: Uncharacteri 30.1 1.4E+02 0.003 18.4 5.1 39 73-123 16-54 (71)
184 PF08206 OB_RNB: Ribonuclease 25.5 51 0.0011 19.1 1.5 37 97-139 7-44 (58)
185 PF11823 DUF3343: Protein of u 24.8 1.1E+02 0.0024 18.5 3.0 25 100-124 3-27 (73)
186 PHA03008 hypothetical protein; 22.6 1E+02 0.0022 23.2 2.9 37 53-89 21-57 (234)
187 PRK04405 prsA peptidylprolyl i 22.3 84 0.0018 24.8 2.6 40 64-120 128-167 (298)
188 PF15063 TC1: Thyroid cancer p 22.2 57 0.0012 20.5 1.3 28 53-80 25-52 (79)
189 COG5594 Uncharacterized integr 22.1 1.2E+02 0.0025 27.7 3.6 37 99-141 358-394 (827)
190 PF13046 DUF3906: Protein of u 22.1 1.4E+02 0.003 18.1 2.9 26 64-89 29-54 (64)
191 CHL00123 rps6 ribosomal protei 22.0 1.8E+02 0.0039 18.8 3.7 59 55-116 10-80 (97)
192 cd00027 BRCT Breast Cancer Sup 21.8 1.2E+02 0.0027 16.7 2.8 28 54-81 2-29 (72)
193 COG3132 Uncharacterized protei 21.4 1.3E+02 0.0029 22.2 3.2 40 101-147 121-160 (215)
194 PF09869 DUF2096: Uncharacteri 20.8 3.3E+02 0.0072 19.8 5.1 47 60-119 118-164 (169)
195 PRK08559 nusG transcription an 20.5 1.1E+02 0.0023 21.6 2.6 24 97-120 45-68 (153)
196 KOG4213 RNA-binding protein La 20.4 1.7E+02 0.0036 21.8 3.5 50 65-116 118-168 (205)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.87 E-value=5e-21 Score=135.73 Aligned_cols=81 Identities=19% Similarity=0.427 Sum_probs=75.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
+++|||+|||+++++++|+++|++||.|.+++++.+. .+++++|||||+|.+.++|++|++.||+..|.+ +.
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~---~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G-----r~ 105 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDR---ETGRSRGFGFVNFNDEGAATAAISEMDGKELNG-----RH 105 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecC---CCCCcceEEEEEECCHHHHHHHHHHcCCCEECC-----EE
Confidence 6889999999999999999999999999999999887 678999999999999999999999999999987 47
Q ss_pred EEEEeecCC
Q 031746 133 LRLQFSRNP 141 (153)
Q Consensus 133 l~V~~a~~~ 141 (153)
|+|+++..+
T Consensus 106 l~V~~a~~~ 114 (144)
T PLN03134 106 IRVNPANDR 114 (144)
T ss_pred EEEEeCCcC
Confidence 999999754
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.81 E-value=4.1e-19 Score=141.58 Aligned_cols=84 Identities=24% Similarity=0.387 Sum_probs=77.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
+.+|||+|||+++++++|+++|++||.|.+++++.+. .+|.++|||||+|.+.++|.+|+..|||..|.+ |.
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~---~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~g-----r~ 340 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDL---TTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGN-----RV 340 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcC---CCCCccceEEEEECCHHHHHHHHHHhCCCEECC-----eE
Confidence 4579999999999999999999999999999999886 578999999999999999999999999999987 57
Q ss_pred EEEEeecCCCCC
Q 031746 133 LRLQFSRNPGPR 144 (153)
Q Consensus 133 l~V~~a~~~~~r 144 (153)
|+|+|...+..|
T Consensus 341 i~V~~~~~~~~~ 352 (352)
T TIGR01661 341 LQVSFKTNKAYR 352 (352)
T ss_pred EEEEEccCCCCC
Confidence 999999876543
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.77 E-value=2.3e-18 Score=137.61 Aligned_cols=82 Identities=27% Similarity=0.441 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 51 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 51 ~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
...++|||+|||+++|+++|+++|++||.|++|+|+.+. .+++++|||||+|.+.++|++|++.|||..|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~---~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr---- 177 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDY---KTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNK---- 177 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC---CCCccCcEEEEEEccHHHHHHHHHHcCCCccCCc----
Confidence 347899999999999999999999999999999999886 5788999999999999999999999999999874
Q ss_pred ccEEEEeecC
Q 031746 131 KFLRLQFSRN 140 (153)
Q Consensus 131 r~l~V~~a~~ 140 (153)
+|+|+|+++
T Consensus 178 -~i~V~~a~p 186 (346)
T TIGR01659 178 -RLKVSYARP 186 (346)
T ss_pred -eeeeecccc
Confidence 699999875
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.77 E-value=2.3e-18 Score=137.28 Aligned_cols=81 Identities=25% Similarity=0.459 Sum_probs=75.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
..+|||+|||+++++++|+++|++||.|.+|+++.++ .+|+++|||||+|.+.++|++|++.|||..|.++ .
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~---~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~-----~ 74 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDK---VTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNK-----T 74 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcC---CCCccceEEEEEECcHHHHHHHHhhcccEEECCe-----e
Confidence 5789999999999999999999999999999999887 5688999999999999999999999999999874 6
Q ss_pred EEEEeecCC
Q 031746 133 LRLQFSRNP 141 (153)
Q Consensus 133 l~V~~a~~~ 141 (153)
|+|+|+++.
T Consensus 75 i~v~~a~~~ 83 (352)
T TIGR01661 75 IKVSYARPS 83 (352)
T ss_pred EEEEeeccc
Confidence 999998754
No 5
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=1.8e-18 Score=117.93 Aligned_cols=79 Identities=23% Similarity=0.427 Sum_probs=72.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
+++||||||.+.++||+|.+||+.+|.|..|.+-.++ ..-.++|||||+|.+.++|+.|++.++|+.|++ ++
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr---~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd-----r~ 107 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDR---FKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD-----RP 107 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEecccc---CCcCccceEEEEEecchhHHHHHHHhccCcccc-----cc
Confidence 7999999999999999999999999999988777776 446689999999999999999999999999987 58
Q ss_pred EEEEeec
Q 031746 133 LRLQFSR 139 (153)
Q Consensus 133 l~V~~a~ 139 (153)
|++.|..
T Consensus 108 ir~D~D~ 114 (153)
T KOG0121|consen 108 IRIDWDA 114 (153)
T ss_pred eeeeccc
Confidence 9999865
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.75 E-value=5.9e-18 Score=135.27 Aligned_cols=83 Identities=24% Similarity=0.361 Sum_probs=75.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
..+|||+|||+++|+++|+++|++||.|..++++.++ .+|+++|||||+|.+.++|++|++.||+..+.+. .+.
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~---~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~---~~~ 266 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDK---LTGTPRGVAFVRFNKREEAQEAISALNNVIPEGG---SQP 266 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecC---CCCccceEEEEEECCHHHHHHHHHHhCCCccCCC---cee
Confidence 4689999999999999999999999999999999876 6789999999999999999999999999998774 257
Q ss_pred EEEEeecCC
Q 031746 133 LRLQFSRNP 141 (153)
Q Consensus 133 l~V~~a~~~ 141 (153)
|+|.++...
T Consensus 267 l~V~~a~~~ 275 (346)
T TIGR01659 267 LTVRLAEEH 275 (346)
T ss_pred EEEEECCcc
Confidence 999998753
No 7
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=6.7e-18 Score=126.14 Aligned_cols=84 Identities=31% Similarity=0.486 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCC
Q 031746 50 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 129 (153)
Q Consensus 50 ~~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~ 129 (153)
.++.++|-|.||+.+++|++|++||..||.|..+.+..++ .+|.++|||||.|.+.++|.+|+..|||+-+++
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK---~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~---- 258 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDK---ETGLSKGFAFVTFESRDDAARAIADLNGYGYDN---- 258 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEcc---ccCcccceEEEEEecHHHHHHHHHHccCcccce----
Confidence 3467899999999999999999999999999999999998 889999999999999999999999999999977
Q ss_pred CccEEEEeecCC
Q 031746 130 SKFLRLQFSRNP 141 (153)
Q Consensus 130 ~r~l~V~~a~~~ 141 (153)
-.|+|+|+++.
T Consensus 259 -LILrvEwskP~ 269 (270)
T KOG0122|consen 259 -LILRVEWSKPS 269 (270)
T ss_pred -EEEEEEecCCC
Confidence 48999999963
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.73 E-value=2.1e-17 Score=102.17 Aligned_cols=67 Identities=30% Similarity=0.525 Sum_probs=62.4
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 56 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 56 L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
|||+|||.++|+++|+++|++||.|..+.+..+ .++..++||||+|.+.++|++|++.|||+.+.++
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~----~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~ 67 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN----SSGKSKGYAFVEFESEEDAEKALEELNGKKINGR 67 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE----TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc----ccccccceEEEEEcCHHHHHHHHHHcCCCEECcc
Confidence 799999999999999999999999999998876 3577889999999999999999999999999874
No 9
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.73 E-value=1.7e-17 Score=139.92 Aligned_cols=82 Identities=16% Similarity=0.348 Sum_probs=76.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|+.||.|.++++..+. .+|+++|||||+|.+.++|.+|++.||++.|.|+ .
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~---~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr-----~ 275 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAP---TGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQ-----Y 275 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecC---CCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCe-----E
Confidence 5789999999999999999999999999999999886 5688999999999999999999999999999885 6
Q ss_pred EEEEeecCCC
Q 031746 133 LRLQFSRNPG 142 (153)
Q Consensus 133 l~V~~a~~~~ 142 (153)
|+|.++..++
T Consensus 276 LrV~kAi~pP 285 (612)
T TIGR01645 276 LRVGKCVTPP 285 (612)
T ss_pred EEEEecCCCc
Confidence 9999998654
No 10
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=1.8e-17 Score=118.39 Aligned_cols=78 Identities=27% Similarity=0.431 Sum_probs=70.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++||||||+..+++.||+.+|..||.+..|.|... +.|||||||++..+|+.|+..|||..|++. .
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn--------PPGfAFVEFed~RDA~DAvr~LDG~~~cG~-----r 76 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN--------PPGFAFVEFEDPRDAEDAVRYLDGKDICGS-----R 76 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec--------CCCceEEeccCcccHHHHHhhcCCccccCc-----e
Confidence 588999999999999999999999999999887653 456999999999999999999999999986 5
Q ss_pred EEEEeecCCCC
Q 031746 133 LRLQFSRNPGP 143 (153)
Q Consensus 133 l~V~~a~~~~~ 143 (153)
|+|+++.-.+.
T Consensus 77 ~rVE~S~G~~r 87 (195)
T KOG0107|consen 77 IRVELSTGRPR 87 (195)
T ss_pred EEEEeecCCcc
Confidence 99999986543
No 11
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=1.3e-16 Score=127.80 Aligned_cols=91 Identities=27% Similarity=0.425 Sum_probs=79.9
Q ss_pred CCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 031746 41 PGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG 120 (153)
Q Consensus 41 ~~~~~~~~~~~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g 120 (153)
|.+...+.+ .++.||||.||.++.|++|..||++.|.|-+++++++. .+|.++|||||.|.+.+.|+.|++.||+
T Consensus 73 P~weg~~p~--~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~---~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn 147 (506)
T KOG0117|consen 73 PGWEGPPPP--RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDP---FSGDNRGYAFVTFCTKEEAQEAIKELNN 147 (506)
T ss_pred CcccCCCCC--CCceEEecCCCccccchhhHHHHHhccceeeEEEeecc---cCCCCcceEEEEeecHHHHHHHHHHhhC
Confidence 334443333 38999999999999999999999999999999999997 6899999999999999999999999999
Q ss_pred CccCCCCCCCccEEEEeecC
Q 031746 121 YRMDEDDPDSKFLRLQFSRN 140 (153)
Q Consensus 121 ~~l~~~~~~~r~l~V~~a~~ 140 (153)
++|... +.|+|+.+..
T Consensus 148 ~Eir~G----K~igvc~Sva 163 (506)
T KOG0117|consen 148 YEIRPG----KLLGVCVSVA 163 (506)
T ss_pred ccccCC----CEeEEEEeee
Confidence 999855 5799988753
No 12
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=3.8e-16 Score=121.05 Aligned_cols=80 Identities=24% Similarity=0.365 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 51 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 51 ~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
+..++|+|+|||+...|.||+.+|++||.|.+|+|+.+. + -+|||+||.|++.++|++|-.+|||..+.|
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE---R--GSKGFGFVTmen~~dadRARa~LHgt~VEG----- 163 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE---R--GSKGFGFVTMENPADADRARAELHGTVVEG----- 163 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc---C--CCCccceEEecChhhHHHHHHHhhcceeec-----
Confidence 335789999999999999999999999999999999876 2 378999999999999999999999999977
Q ss_pred ccEEEEeecC
Q 031746 131 KFLRLQFSRN 140 (153)
Q Consensus 131 r~l~V~~a~~ 140 (153)
|+|.|..+..
T Consensus 164 RkIEVn~ATa 173 (376)
T KOG0125|consen 164 RKIEVNNATA 173 (376)
T ss_pred eEEEEeccch
Confidence 5699988753
No 13
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=7.3e-16 Score=118.12 Aligned_cols=85 Identities=21% Similarity=0.327 Sum_probs=77.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 47 PLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 47 ~~~~~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
...-++-+||||+-|+++++|..|+..|+.||.|..|+|+.++ .+|+++|||||+|++..+...|.+.-+|.+|+++
T Consensus 95 ~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~---vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr 171 (335)
T KOG0113|consen 95 NAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDK---VTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR 171 (335)
T ss_pred cccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeec---ccCCccceEEEEeccHHHHHHHHHhccCceecCc
Confidence 3344567999999999999999999999999999999999998 8899999999999999999999999999999885
Q ss_pred CCCCccEEEEeec
Q 031746 127 DPDSKFLRLQFSR 139 (153)
Q Consensus 127 ~~~~r~l~V~~a~ 139 (153)
.|-|.+-.
T Consensus 172 -----ri~VDvER 179 (335)
T KOG0113|consen 172 -----RILVDVER 179 (335)
T ss_pred -----EEEEEecc
Confidence 58887765
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.67 E-value=3.5e-16 Score=132.05 Aligned_cols=81 Identities=20% Similarity=0.351 Sum_probs=74.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
..++|||+|||+++++++|+++|++||.|.+|+++.++ .+|+++|||||+|.+.++|.+|++.|||..|.++
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~---~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR----- 177 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDP---ATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR----- 177 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecC---CCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecc-----
Confidence 35899999999999999999999999999999999887 6789999999999999999999999999999874
Q ss_pred cEEEEeecC
Q 031746 132 FLRLQFSRN 140 (153)
Q Consensus 132 ~l~V~~a~~ 140 (153)
.|+|.+...
T Consensus 178 ~IkV~rp~~ 186 (612)
T TIGR01645 178 NIKVGRPSN 186 (612)
T ss_pred eeeeccccc
Confidence 699986543
No 15
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.66 E-value=6.4e-16 Score=117.82 Aligned_cols=76 Identities=20% Similarity=0.316 Sum_probs=68.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+.+|+++|+++|+.||.|.+|+|+.+. ..+|||||+|.+.++|+.|+ .|||..|.++ .
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~------~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr-----~ 71 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN------ERSQIAYVTFKDPQGAETAL-LLSGATIVDQ-----S 71 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC------CCCCEEEEEeCcHHHHHHHH-HhcCCeeCCc-----e
Confidence 5799999999999999999999999999999998764 23579999999999999999 5999999884 6
Q ss_pred EEEEeecC
Q 031746 133 LRLQFSRN 140 (153)
Q Consensus 133 l~V~~a~~ 140 (153)
|+|+++..
T Consensus 72 V~Vt~a~~ 79 (260)
T PLN03120 72 VTITPAED 79 (260)
T ss_pred EEEEeccC
Confidence 99999863
No 16
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=4.9e-16 Score=107.02 Aligned_cols=83 Identities=20% Similarity=0.380 Sum_probs=77.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
+..|||.++..++||++|.+.|..||.|.++.+..++ ++|..|||++|+|++.++|.+|+..|||..|.+++
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDR---RtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~----- 143 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDR---RTGYVKGYALVEYETLKEAQAAIDALNGAELLGQN----- 143 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeecccc---ccccccceeeeehHhHHHHHHHHHhccchhhhCCc-----
Confidence 6789999999999999999999999999999999888 88999999999999999999999999999999975
Q ss_pred EEEEeecCCCC
Q 031746 133 LRLQFSRNPGP 143 (153)
Q Consensus 133 l~V~~a~~~~~ 143 (153)
|.|.|+-..+|
T Consensus 144 v~VDw~Fv~gp 154 (170)
T KOG0130|consen 144 VSVDWCFVKGP 154 (170)
T ss_pred eeEEEEEecCC
Confidence 99999865433
No 17
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.65 E-value=8.3e-16 Score=129.37 Aligned_cols=80 Identities=23% Similarity=0.330 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
..++|||+|||++++|++|+++|++||.|.+++|+.+. +|+++|||||+|.+.++|++|++.||++.+... +
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~----sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~G----r 128 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDF----SGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPG----R 128 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECC----CCCccceEEEEeCCHHHHHHHHHHcCCCeecCC----c
Confidence 36899999999999999999999999999999999884 588999999999999999999999999998643 3
Q ss_pred cEEEEeec
Q 031746 132 FLRLQFSR 139 (153)
Q Consensus 132 ~l~V~~a~ 139 (153)
.|.|.++.
T Consensus 129 ~l~V~~S~ 136 (578)
T TIGR01648 129 LLGVCISV 136 (578)
T ss_pred cccccccc
Confidence 46666553
No 18
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.65 E-value=1.5e-15 Score=94.46 Aligned_cols=67 Identities=28% Similarity=0.526 Sum_probs=60.4
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 56 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 56 L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
|||+|||+++++++|+++|+.||.|..+.+...+ . +.++++|||+|.+.++|.+|++.+++..+.++
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~---~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~ 67 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNK---D-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGR 67 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEEST---T-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeee---c-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCE
Confidence 7999999999999999999999999999998775 4 78899999999999999999999999999874
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.65 E-value=1.6e-15 Score=125.00 Aligned_cols=80 Identities=24% Similarity=0.463 Sum_probs=74.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
..+|||+|||+.+++++|+++|++||.|..|.++.+. .+|+++|||||+|.+.++|.+|++.|||..|.+ +.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~---~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g-----~~ 257 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDP---ETGRSKGFGFIQFHDAEEAKEALEVMNGFELAG-----RP 257 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC---CCCccceEEEEEECCHHHHHHHHHhcCCcEECC-----EE
Confidence 5899999999999999999999999999999998876 568899999999999999999999999999977 47
Q ss_pred EEEEeecC
Q 031746 133 LRLQFSRN 140 (153)
Q Consensus 133 l~V~~a~~ 140 (153)
|+|.|+..
T Consensus 258 i~v~~a~~ 265 (457)
T TIGR01622 258 IKVGYAQD 265 (457)
T ss_pred EEEEEccC
Confidence 99999764
No 20
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=3.4e-16 Score=125.34 Aligned_cols=104 Identities=16% Similarity=0.215 Sum_probs=85.8
Q ss_pred cCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEE
Q 031746 22 QNLRSSSIDDQLPFDAAARPGHETLPLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILC 101 (153)
Q Consensus 22 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~ 101 (153)
+.++..-|+..+..+++.+...+.... ....+.|||.||+.++|||.|+++|++||.|..|+.+.| ||
T Consensus 229 ~~g~~klwgn~~tVdWAep~~e~ded~-ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-----------Ya 296 (506)
T KOG0117|consen 229 MPGKIKLWGNAITVDWAEPEEEPDEDT-MSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-----------YA 296 (506)
T ss_pred cCCceeecCCcceeeccCcccCCChhh-hhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-----------ee
Confidence 336666666666777766665555443 334788999999999999999999999999998877644 99
Q ss_pred EEEeCCHHHHHHHHHHhCCCccCCCCCCCccEEEEeecCCC
Q 031746 102 FVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSRNPG 142 (153)
Q Consensus 102 fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~V~~a~~~~ 142 (153)
||.|.+.++|.+|++.+||+.|.+. .|.|.+|+++.
T Consensus 297 FVHf~eR~davkAm~~~ngkeldG~-----~iEvtLAKP~~ 332 (506)
T KOG0117|consen 297 FVHFAEREDAVKAMKETNGKELDGS-----PIEVTLAKPVD 332 (506)
T ss_pred EEeecchHHHHHHHHHhcCceecCc-----eEEEEecCChh
Confidence 9999999999999999999999886 69999999753
No 21
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=2.8e-17 Score=118.19 Aligned_cols=79 Identities=19% Similarity=0.431 Sum_probs=74.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
+.-|||||||+++||.||--+|++||.|++|.++.++ .+|+++||||+.|++..+..-|+..|||.+|.+ |+
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk---~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g-----Rt 106 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDK---KTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG-----RT 106 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecC---CCCcccceEEEEecCccceEEEEeccCCceecc-----ee
Confidence 6789999999999999999999999999999999998 789999999999999999999999999999988 57
Q ss_pred EEEEeec
Q 031746 133 LRLQFSR 139 (153)
Q Consensus 133 l~V~~a~ 139 (153)
|+|....
T Consensus 107 irVDHv~ 113 (219)
T KOG0126|consen 107 IRVDHVS 113 (219)
T ss_pred EEeeecc
Confidence 9997654
No 22
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=6.1e-16 Score=111.75 Aligned_cols=78 Identities=33% Similarity=0.603 Sum_probs=69.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||||||.++.+.+|++||.+||.|.+|.+.... | +..||||+|++..+|+.|+..-+|+.+++. .
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~-----g-~ppfafVeFEd~RDAeDAiygRdGYdydg~-----r 74 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP-----G-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGC-----R 74 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC-----C-CCCeeEEEecCccchhhhhhcccccccCcc-----e
Confidence 6899999999999999999999999999999885432 2 345999999999999999999999999885 6
Q ss_pred EEEEeecCC
Q 031746 133 LRLQFSRNP 141 (153)
Q Consensus 133 l~V~~a~~~ 141 (153)
|+|+|+.-.
T Consensus 75 LRVEfprgg 83 (241)
T KOG0105|consen 75 LRVEFPRGG 83 (241)
T ss_pred EEEEeccCC
Confidence 999998753
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.64 E-value=2.2e-15 Score=125.60 Aligned_cols=81 Identities=19% Similarity=0.349 Sum_probs=74.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
..++|||+|||+.+++++|+++|++||.|..+.++.+. .+|+++|||||+|.+.++|..|++.|||..|.+.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~---~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~----- 365 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDI---ATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDN----- 365 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC---CCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCe-----
Confidence 35799999999999999999999999999999998876 5788999999999999999999999999999875
Q ss_pred cEEEEeecC
Q 031746 132 FLRLQFSRN 140 (153)
Q Consensus 132 ~l~V~~a~~ 140 (153)
.|+|+++..
T Consensus 366 ~l~v~~a~~ 374 (509)
T TIGR01642 366 KLHVQRACV 374 (509)
T ss_pred EEEEEECcc
Confidence 699999864
No 24
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.63 E-value=1.5e-15 Score=128.33 Aligned_cols=78 Identities=29% Similarity=0.448 Sum_probs=72.7
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccEE
Q 031746 55 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 134 (153)
Q Consensus 55 ~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~ 134 (153)
+|||+|||+++||++|+++|++||.|.+|+++.+. .+++++|||||+|.+.++|++|++.||+..+.++ .|+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~---~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk-----~i~ 73 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDS---VTRRSLGYGYVNFQNPADAERALETMNFKRLGGK-----PIR 73 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC---CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe-----eEE
Confidence 69999999999999999999999999999999887 5688999999999999999999999999999874 699
Q ss_pred EEeecC
Q 031746 135 LQFSRN 140 (153)
Q Consensus 135 V~~a~~ 140 (153)
|.|+..
T Consensus 74 i~~s~~ 79 (562)
T TIGR01628 74 IMWSQR 79 (562)
T ss_pred eecccc
Confidence 999864
No 25
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=1.1e-15 Score=113.76 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=68.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
-.+||||+|+++++.++|+++|++||+|++..++.|+ .+|++|||+||.|.|.++|.+|++.-| -.|+| |+
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~---~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdG-----R~ 82 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDK---NTGRSKGYGFVTFRDAEAATRACKDPN-PIIDG-----RK 82 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEecc---CCccccceeeEEeecHHHHHHHhcCCC-Ccccc-----cc
Confidence 3679999999999999999999999999999999998 789999999999999999999996443 44554 45
Q ss_pred EEEEeecC
Q 031746 133 LRLQFSRN 140 (153)
Q Consensus 133 l~V~~a~~ 140 (153)
-.+.++..
T Consensus 83 aNcnlA~l 90 (247)
T KOG0149|consen 83 ANCNLASL 90 (247)
T ss_pred cccchhhh
Confidence 67766655
No 26
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.61 E-value=1.5e-15 Score=111.28 Aligned_cols=80 Identities=23% Similarity=0.328 Sum_probs=75.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
...|-|-||.+-++.++|+.+|++||.|-+|.|..+. .++.++|||||-|.+..+|+.|+++|+|.+|++. .
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr---~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgR-----e 84 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDR---YTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGR-----E 84 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceeccccc---ccccccceeEEEeeecchHHHHHHhhcceeeccc-----e
Confidence 5789999999999999999999999999999999887 6788999999999999999999999999999885 5
Q ss_pred EEEEeecC
Q 031746 133 LRLQFSRN 140 (153)
Q Consensus 133 l~V~~a~~ 140 (153)
|+|++++-
T Consensus 85 lrVq~ary 92 (256)
T KOG4207|consen 85 LRVQMARY 92 (256)
T ss_pred eeehhhhc
Confidence 99999864
No 27
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.61 E-value=2.7e-15 Score=126.74 Aligned_cols=81 Identities=21% Similarity=0.340 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
...+|||+||++++++++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..+.++
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~----~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk----- 354 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDE----KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGK----- 354 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECC----CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCc-----
Confidence 36789999999999999999999999999999999874 588999999999999999999999999999774
Q ss_pred cEEEEeecCC
Q 031746 132 FLRLQFSRNP 141 (153)
Q Consensus 132 ~l~V~~a~~~ 141 (153)
.|.|.++..+
T Consensus 355 ~l~V~~a~~k 364 (562)
T TIGR01628 355 PLYVALAQRK 364 (562)
T ss_pred eeEEEeccCc
Confidence 6999998753
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.60 E-value=5e-15 Score=122.06 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+.+++++|+++|++||.|.+|+++.++ .+|+++|||||+|.+.++|.+|+ .|+|..+.+.
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~---~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~----- 158 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDR---NSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGR----- 158 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecC---CCCCcceEEEEEECCHHHHHHHH-HhCCCEECCe-----
Confidence 36899999999999999999999999999999999876 67889999999999999999999 5999999874
Q ss_pred cEEEEeecC
Q 031746 132 FLRLQFSRN 140 (153)
Q Consensus 132 ~l~V~~a~~ 140 (153)
+|.|.++..
T Consensus 159 ~i~v~~~~~ 167 (457)
T TIGR01622 159 PIIVQSSQA 167 (457)
T ss_pred eeEEeecch
Confidence 688887654
No 29
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=9.1e-15 Score=96.48 Aligned_cols=82 Identities=26% Similarity=0.484 Sum_probs=69.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 47 PLPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 47 ~~~~~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
.+|+.-.+.|||.|||+++|.++..++|++||.|..|++-..+ .-+|-|||.|++..+|.+|+..|+|+.+.+
T Consensus 12 rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k------~TrGTAFVVYedi~dAk~A~dhlsg~n~~~- 84 (124)
T KOG0114|consen 12 RLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK------ETRGTAFVVYEDIFDAKKACDHLSGYNVDN- 84 (124)
T ss_pred CCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc------CcCceEEEEehHhhhHHHHHHHhcccccCC-
Confidence 3444446899999999999999999999999999999986543 235689999999999999999999999987
Q ss_pred CCCCccEEEEeec
Q 031746 127 DPDSKFLRLQFSR 139 (153)
Q Consensus 127 ~~~~r~l~V~~a~ 139 (153)
+.|.|-|-.
T Consensus 85 ----ryl~vlyyq 93 (124)
T KOG0114|consen 85 ----RYLVVLYYQ 93 (124)
T ss_pred ----ceEEEEecC
Confidence 468887644
No 30
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.59 E-value=2e-15 Score=108.58 Aligned_cols=83 Identities=14% Similarity=0.152 Sum_probs=75.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031746 49 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 128 (153)
Q Consensus 49 ~~~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~ 128 (153)
+.++..+||||||+..++++.|++||-+.|+|+++++..++ .+.+.+||||++|.++++|+-|++.||..+|.+
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDr---v~~~~qGygF~Ef~~eedadYAikiln~VkLYg--- 78 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDR---VTQKHQGYGFAEFRTEEDADYAIKILNMVKLYG--- 78 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhh---hcccccceeEEEEechhhhHHHHHHHHHHHhcC---
Confidence 34557899999999999999999999999999999999887 566788999999999999999999999999987
Q ss_pred CCccEEEEeec
Q 031746 129 DSKFLRLQFSR 139 (153)
Q Consensus 129 ~~r~l~V~~a~ 139 (153)
|+|+|..+.
T Consensus 79 --rpIrv~kas 87 (203)
T KOG0131|consen 79 --RPIRVNKAS 87 (203)
T ss_pred --ceeEEEecc
Confidence 579999887
No 31
>PLN03213 repressor of silencing 3; Provisional
Probab=99.59 E-value=4.3e-15 Score=120.73 Aligned_cols=76 Identities=22% Similarity=0.361 Sum_probs=68.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCH--HHHHHHHHHhCCCccCCCCCCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENP--ACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~--~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
.-+||||||++.+++++|+.+|+.||.|..|.|+.. +| +|||||+|.+. .++.+|+..|||.++.|+
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-----TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR---- 78 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-----KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGG---- 78 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-----cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCc----
Confidence 468999999999999999999999999999999833 45 89999999987 789999999999999985
Q ss_pred ccEEEEeecC
Q 031746 131 KFLRLQFSRN 140 (153)
Q Consensus 131 r~l~V~~a~~ 140 (153)
.|+|+.|++
T Consensus 79 -~LKVNKAKP 87 (759)
T PLN03213 79 -RLRLEKAKE 87 (759)
T ss_pred -eeEEeeccH
Confidence 699998874
No 32
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=4.4e-15 Score=112.34 Aligned_cols=81 Identities=26% Similarity=0.466 Sum_probs=75.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
...|.|..||..+|++||+.||+..|+|++|+++.|+ -+|.+-||+||.|.++++|++|+..|||..|.. ++
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDK---itGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~-----KT 112 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDK---ITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQN-----KT 112 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeecc---ccccccccceeeecChHHHHHHHhhhcceeecc-----ce
Confidence 3569999999999999999999999999999999998 679999999999999999999999999999976 47
Q ss_pred EEEEeecCC
Q 031746 133 LRLQFSRNP 141 (153)
Q Consensus 133 l~V~~a~~~ 141 (153)
|+|+|+++.
T Consensus 113 IKVSyARPS 121 (360)
T KOG0145|consen 113 IKVSYARPS 121 (360)
T ss_pred EEEEeccCC
Confidence 999999964
No 33
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.59 E-value=1.1e-14 Score=109.64 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=66.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
+.+|||+||++.+|+++|++||+.||.|.+|+|+.+. ..++||||+|.+.++++.|+ .|+|..|.++ +
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~------et~gfAfVtF~d~~aaetAl-lLnGa~l~d~-----~ 72 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG------EYACTAYVTFKDAYALETAV-LLSGATIVDQ-----R 72 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC------CcceEEEEEECCHHHHHHHH-hcCCCeeCCc-----e
Confidence 6899999999999999999999999999999998763 33469999999999999999 8999999885 5
Q ss_pred EEEEeec
Q 031746 133 LRLQFSR 139 (153)
Q Consensus 133 l~V~~a~ 139 (153)
|.|.-..
T Consensus 73 I~It~~~ 79 (243)
T PLN03121 73 VCITRWG 79 (243)
T ss_pred EEEEeCc
Confidence 7776543
No 34
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.58 E-value=1.8e-14 Score=121.31 Aligned_cols=74 Identities=22% Similarity=0.358 Sum_probs=67.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCC--CCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPF--VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~--G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
.++|||+||++++++++|+++|++| |.|.+|.++. +||||+|.+.++|++|++.|||..|.++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-----------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr---- 297 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-----------DYAFVHFEDREDAVKAMDELNGKELEGS---- 297 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-----------CeEEEEeCCHHHHHHHHHHhCCCEECCE----
Confidence 5789999999999999999999999 9999987652 3999999999999999999999999874
Q ss_pred ccEEEEeecCCC
Q 031746 131 KFLRLQFSRNPG 142 (153)
Q Consensus 131 r~l~V~~a~~~~ 142 (153)
.|+|+|++++.
T Consensus 298 -~I~V~~Akp~~ 308 (578)
T TIGR01648 298 -EIEVTLAKPVD 308 (578)
T ss_pred -EEEEEEccCCC
Confidence 79999998753
No 35
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.57 E-value=6.2e-15 Score=120.22 Aligned_cols=81 Identities=23% Similarity=0.441 Sum_probs=76.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccE
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 133 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l 133 (153)
+.+||||+|+++++++|.++|+..|.|.+++++.|. .+|+++||+|++|.+.++|..|++.|||+++.+ |+|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~---~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g-----r~l 90 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDR---ETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG-----RKL 90 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccc---cCCCcCceeeEecCchhhHHHHHHhcCCcccCC-----ceE
Confidence 789999999999999999999999999999999998 889999999999999999999999999999988 479
Q ss_pred EEEeecCCC
Q 031746 134 RLQFSRNPG 142 (153)
Q Consensus 134 ~V~~a~~~~ 142 (153)
+|.|+....
T Consensus 91 ~v~~~~~~~ 99 (435)
T KOG0108|consen 91 RVNYASNRK 99 (435)
T ss_pred Eeecccccc
Confidence 999998643
No 36
>smart00362 RRM_2 RNA recognition motif.
Probab=99.57 E-value=2.7e-14 Score=87.32 Aligned_cols=67 Identities=30% Similarity=0.521 Sum_probs=60.8
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 55 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 55 ~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
+|||+|||.++++++|+++|++||.+..+.+..+. +.++|+|||+|.+.++|+.|++.+++..+.+.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~ 67 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-----GKSKGFAFVEFESEEDAEKAIEALNGTKLGGR 67 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CCCCceEEEEeCCHHHHHHHHHHhCCcEECCE
Confidence 58999999999999999999999999999887653 56778999999999999999999999999763
No 37
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.56 E-value=2.3e-14 Score=108.06 Aligned_cols=79 Identities=33% Similarity=0.531 Sum_probs=73.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|.++|.+||.|..+.+..++ .++.++|||||+|.+.++|..|+..++|..|.++ .
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~---~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~-----~ 186 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDR---ETGKSRGFAFVEFESEESAEKAIEELNGKELEGR-----P 186 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeecc---ccCccCceEEEEecCHHHHHHHHHHcCCCeECCc-----e
Confidence 5899999999999999999999999999999998886 5789999999999999999999999999999874 7
Q ss_pred EEEEeec
Q 031746 133 LRLQFSR 139 (153)
Q Consensus 133 l~V~~a~ 139 (153)
|+|.++.
T Consensus 187 ~~v~~~~ 193 (306)
T COG0724 187 LRVQKAQ 193 (306)
T ss_pred eEeeccc
Confidence 9999965
No 38
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.56 E-value=2.3e-14 Score=119.32 Aligned_cols=76 Identities=21% Similarity=0.307 Sum_probs=69.0
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 52 ASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 52 ~~~~L~V~nLp~-~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
++++|||+|||+ .+|+++|+++|++||.|.+|+++.++ +|||||+|.+.++|..|++.|||..|.++
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~--------~g~afV~f~~~~~A~~Ai~~lng~~l~g~---- 341 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK--------KETALIEMADPYQAQLALTHLNGVKLFGK---- 341 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCEECCc----
Confidence 468999999998 69999999999999999999998753 36999999999999999999999999874
Q ss_pred ccEEEEeecC
Q 031746 131 KFLRLQFSRN 140 (153)
Q Consensus 131 r~l~V~~a~~ 140 (153)
.|+|++++.
T Consensus 342 -~l~v~~s~~ 350 (481)
T TIGR01649 342 -PLRVCPSKQ 350 (481)
T ss_pred -eEEEEEccc
Confidence 699999865
No 39
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.2e-14 Score=110.25 Aligned_cols=88 Identities=16% Similarity=0.275 Sum_probs=79.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.-.+||+.|..+++.++|++-|..||.|.+++++.|. .++|+|||+||.|-+.++|++|+..|||..|.. |.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~---~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~-----R~ 133 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDM---NTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGR-----RT 133 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecc---cCCcccceeEEeccchHHHHHHHHHhCCeeecc-----ce
Confidence 3469999999999999999999999999999999998 789999999999999999999999999999976 58
Q ss_pred EEEEeecCCCCCCCCC
Q 031746 133 LRLQFSRNPGPRSVFG 148 (153)
Q Consensus 133 l~V~~a~~~~~r~~~~ 148 (153)
|+-.|+..++...+++
T Consensus 134 IRTNWATRKp~e~n~~ 149 (321)
T KOG0148|consen 134 IRTNWATRKPSEMNGK 149 (321)
T ss_pred eeccccccCccccCCC
Confidence 9999998776444443
No 40
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=5.4e-15 Score=109.46 Aligned_cols=88 Identities=22% Similarity=0.372 Sum_probs=79.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031746 49 PPDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 128 (153)
Q Consensus 49 ~~~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~ 128 (153)
+.++-++||||.|..+++|.-|..-|-.||.|.+|.+..+- .+++.+||+||+|+..++|..|+..||+.+|.+
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDy---esqkHRgFgFVefe~aEDAaaAiDNMnesEL~G--- 79 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDY---ESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG--- 79 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccch---hcccccceeEEEeeccchhHHHhhcCchhhhcc---
Confidence 34456899999999999999999999999999999998876 678889999999999999999999999999988
Q ss_pred CCccEEEEeecCCCCC
Q 031746 129 DSKFLRLQFSRNPGPR 144 (153)
Q Consensus 129 ~~r~l~V~~a~~~~~r 144 (153)
|+|+|.++++..-.
T Consensus 80 --rtirVN~AkP~kik 93 (298)
T KOG0111|consen 80 --RTIRVNLAKPEKIK 93 (298)
T ss_pred --eeEEEeecCCcccc
Confidence 58999999976433
No 41
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=4.5e-14 Score=107.21 Aligned_cols=74 Identities=23% Similarity=0.440 Sum_probs=69.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||||++..+||++|++.|+.||.|.+|++..++ ||+||.|+++|.|..||..+||.+|.++ .
T Consensus 164 NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q---------GYaFVrF~tkEaAahAIv~mNntei~G~-----~ 229 (321)
T KOG0148|consen 164 NTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ---------GYAFVRFETKEAAAHAIVQMNNTEIGGQ-----L 229 (321)
T ss_pred CceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc---------ceEEEEecchhhHHHHHHHhcCceeCce-----E
Confidence 7899999999999999999999999999999999875 5999999999999999999999999885 6
Q ss_pred EEEEeecC
Q 031746 133 LRLQFSRN 140 (153)
Q Consensus 133 l~V~~a~~ 140 (153)
++..|.+.
T Consensus 230 VkCsWGKe 237 (321)
T KOG0148|consen 230 VRCSWGKE 237 (321)
T ss_pred EEEecccc
Confidence 99999875
No 42
>smart00360 RRM RNA recognition motif.
Probab=99.53 E-value=5.9e-14 Score=85.44 Aligned_cols=70 Identities=36% Similarity=0.525 Sum_probs=62.5
Q ss_pred EcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccEEE
Q 031746 58 VEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRL 135 (153)
Q Consensus 58 V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~V 135 (153)
|+|||.++++++|+++|++||.|..+.+.... .++.++|||||+|.+.++|..|++.|++..+.++ .|+|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~---~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~-----~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDK---DTGKSKGFAFVEFESEEDAEKALEALNGKELDGR-----PLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCC---CCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCc-----EEEe
Confidence 58999999999999999999999999888765 3578899999999999999999999999999764 4665
No 43
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=8.2e-14 Score=111.46 Aligned_cols=86 Identities=17% Similarity=0.381 Sum_probs=75.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc-CCCCCCCc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM-DEDDPDSK 131 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l-~~~~~~~r 131 (153)
.-+||||.+|..++|+||+++|++||.|.+|.++.|+ .++.++|||||.|.+.++|.+|+.+||+.+. .|.+ .
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk---~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~---~ 107 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDK---STGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMH---H 107 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeeccc---ccCcccceEEEEeccHHHHHHHHHHhhcccccCCCC---c
Confidence 4679999999999999999999999999999999998 6789999999999999999999999998654 4433 4
Q ss_pred cEEEEeecCCCCC
Q 031746 132 FLRLQFSRNPGPR 144 (153)
Q Consensus 132 ~l~V~~a~~~~~r 144 (153)
++.|.++.....|
T Consensus 108 pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 108 PVQVKYADGERER 120 (510)
T ss_pred ceeecccchhhhc
Confidence 7999998765444
No 44
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.51 E-value=9.3e-14 Score=115.67 Aligned_cols=83 Identities=20% Similarity=0.340 Sum_probs=69.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCC--eEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCC-CC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVG--YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD-PD 129 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~--i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~-~~ 129 (153)
+.+|||+|||+.+++++|+++|++||. |..+++...+ +..++||||+|.+.++|.+|+..|||+.|.++. ..
T Consensus 394 s~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-----~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~ 468 (481)
T TIGR01649 394 SATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-----NERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSA 468 (481)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-----CCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCc
Confidence 689999999999999999999999998 7788776543 224689999999999999999999999998752 11
Q ss_pred CccEEEEeecC
Q 031746 130 SKFLRLQFSRN 140 (153)
Q Consensus 130 ~r~l~V~~a~~ 140 (153)
...|+|+|++.
T Consensus 469 ~~~lkv~fs~~ 479 (481)
T TIGR01649 469 PYHLKVSFSTS 479 (481)
T ss_pred cceEEEEeccC
Confidence 23599999974
No 45
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=2.2e-13 Score=103.18 Aligned_cols=81 Identities=25% Similarity=0.413 Sum_probs=75.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
+.+|||-||.+++.|.-|+.+|+.||.|..|+++.|. .+.+.|||+||.+.+.++|..|+..|||+.+.+ |.
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~---ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~-----rv 349 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDF---TTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD-----RV 349 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecC---CcccccceeEEEecchHHHHHHHHHhcCccccc-----eE
Confidence 6799999999999999999999999999999999987 567899999999999999999999999999987 58
Q ss_pred EEEEeecCC
Q 031746 133 LRLQFSRNP 141 (153)
Q Consensus 133 l~V~~a~~~ 141 (153)
|.|+|...+
T Consensus 350 LQVsFKtnk 358 (360)
T KOG0145|consen 350 LQVSFKTNK 358 (360)
T ss_pred EEEEEecCC
Confidence 999987654
No 46
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.50 E-value=2.2e-14 Score=109.86 Aligned_cols=72 Identities=24% Similarity=0.463 Sum_probs=67.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccE
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 133 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l 133 (153)
.+|||||||..+++.+|+.||++||+|++|.|+++ |+||..++...|+.|+..|||++|.+. .|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-----------YgFVHiEdktaaedairNLhgYtLhg~-----nI 66 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-----------YGFVHIEDKTAAEDAIRNLHGYTLHGV-----NI 66 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-----------cceEEeecccccHHHHhhcccceecce-----EE
Confidence 47999999999999999999999999999999865 999999999999999999999999886 49
Q ss_pred EEEeecCC
Q 031746 134 RLQFSRNP 141 (153)
Q Consensus 134 ~V~~a~~~ 141 (153)
+|+-++.+
T Consensus 67 nVeaSksK 74 (346)
T KOG0109|consen 67 NVEASKSK 74 (346)
T ss_pred EEEecccc
Confidence 99988876
No 47
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.48 E-value=5.3e-13 Score=81.93 Aligned_cols=74 Identities=34% Similarity=0.543 Sum_probs=65.0
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccEE
Q 031746 55 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 134 (153)
Q Consensus 55 ~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~ 134 (153)
+|+|+|||.++++++|+++|+.+|.|..+.+.... .+.++|+|||+|.+.++|..|++.+++..+.+. .+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~----~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~-----~~~ 71 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK----DTKSKGFAFVEFEDEEDAEKALEALNGKELGGR-----PLR 71 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC----CCCcceEEEEEECCHHHHHHHHHHhCCCeECCe-----EEE
Confidence 48999999999999999999999999999888764 236678999999999999999999999998764 577
Q ss_pred EEe
Q 031746 135 LQF 137 (153)
Q Consensus 135 V~~ 137 (153)
|++
T Consensus 72 v~~ 74 (74)
T cd00590 72 VEF 74 (74)
T ss_pred EeC
Confidence 764
No 48
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=6.4e-14 Score=112.07 Aligned_cols=87 Identities=24% Similarity=0.334 Sum_probs=76.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCc-cCCCCCCCc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR-MDEDDPDSK 131 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~-l~~~~~~~r 131 (153)
.++||||-|+..+||.+++++|++||.|++|.|+.+. .+.++||+||.|.+.+-|..|++.|||.. +.|.. -
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~----~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs---~ 196 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP----DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCS---Q 196 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecc----cccccceeEEEEehHHHHHHHHHhhccceeeccCC---C
Confidence 5789999999999999999999999999999999885 58899999999999999999999999955 44432 5
Q ss_pred cEEEEeecCCCCCCC
Q 031746 132 FLRLQFSRNPGPRSV 146 (153)
Q Consensus 132 ~l~V~~a~~~~~r~~ 146 (153)
+|-|.|+...++|.+
T Consensus 197 PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 197 PLVVKFADTQKDKDG 211 (510)
T ss_pred ceEEEecccCCCchH
Confidence 899999997766543
No 49
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=2.3e-13 Score=103.43 Aligned_cols=83 Identities=24% Similarity=0.487 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 51 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 51 ~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
.++|+|||-.||.+..+.||...|-.||.|++.++..|+ .+..+|+|+||.|+++.+|..||..|||+.|.-+
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDR---ATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMK---- 355 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDR---ATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK---- 355 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehh---ccccccceeeEecCCchhHHHHHHHhcchhhhhh----
Confidence 358999999999999999999999999999999999988 5677899999999999999999999999999874
Q ss_pred ccEEEEeecCC
Q 031746 131 KFLRLQFSRNP 141 (153)
Q Consensus 131 r~l~V~~a~~~ 141 (153)
+|||++.+++
T Consensus 356 -RLKVQLKRPk 365 (371)
T KOG0146|consen 356 -RLKVQLKRPK 365 (371)
T ss_pred -hhhhhhcCcc
Confidence 6999988754
No 50
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=9.4e-13 Score=103.41 Aligned_cols=79 Identities=23% Similarity=0.413 Sum_probs=74.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.+.|||..|.+-+|+++|+-+|+.||.|.+|.++.+. .+|.+-.||||+|++.+++++|.-.|++..|+++ .
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~---ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr-----R 310 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDR---KTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR-----R 310 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeEEecc---cccchhheeeeeecchhhHHHHHhhhcceeeccc-----e
Confidence 6899999999999999999999999999999999988 7899999999999999999999999999999884 6
Q ss_pred EEEEeec
Q 031746 133 LRLQFSR 139 (153)
Q Consensus 133 l~V~~a~ 139 (153)
|.|.|+.
T Consensus 311 IHVDFSQ 317 (479)
T KOG0415|consen 311 IHVDFSQ 317 (479)
T ss_pred EEeehhh
Confidence 9999874
No 51
>smart00361 RRM_1 RNA recognition motif.
Probab=99.36 E-value=3.5e-12 Score=79.58 Aligned_cols=63 Identities=17% Similarity=0.226 Sum_probs=52.0
Q ss_pred HHHHHHhhc----CCCCeEEEE-EeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccEEE
Q 031746 67 KREVAHIFR----PFVGYKEVR-LVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRL 135 (153)
Q Consensus 67 e~~l~~~F~----~~G~i~~~~-~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~V 135 (153)
+++|+++|+ .||.|.++. ++.++.. ..+.++||+||+|.+.++|.+|++.|||..+.++ .|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~-~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr-----~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVG-YENHKRGNVYITFERSEDAARAIVDLNGRYFDGR-----TVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCC-CCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE-----EEEe
Confidence 578899998 999999985 5555411 1278899999999999999999999999999874 5665
No 52
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.36 E-value=1.1e-12 Score=107.60 Aligned_cols=78 Identities=26% Similarity=0.427 Sum_probs=71.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccE
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 133 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l 133 (153)
..||||||.++++++.|+.+|+.||.|..|.+..+. .+|.++||+||+|.+.++|.+|+..|||.+|.| |.|
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~---~tG~skgfGfi~f~~~~~ar~a~e~lngfelAG-----r~i 350 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDS---ETGRSKGFGFITFVNKEDARKALEQLNGFELAG-----RLI 350 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeecccc---ccccccCcceEEEecHHHHHHHHHHhccceecC-----ceE
Confidence 449999999999999999999999999999998886 679999999999999999999999999999987 578
Q ss_pred EEEeec
Q 031746 134 RLQFSR 139 (153)
Q Consensus 134 ~V~~a~ 139 (153)
+|..-.
T Consensus 351 kV~~v~ 356 (549)
T KOG0147|consen 351 KVSVVT 356 (549)
T ss_pred EEEEee
Confidence 887653
No 53
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=8.5e-13 Score=104.11 Aligned_cols=78 Identities=19% Similarity=0.375 Sum_probs=72.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.|++|||.+.+++.|+.|+.-|..||.|.+|.+.||. .+++.|||+||||+-++.|.-|++.|||.++.++|
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp---~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRN----- 184 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDP---ATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRN----- 184 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeeccccc---ccccccceEEEEEeCcHHHHHHHHHhccccccCcc-----
Confidence 4899999999999999999999999999999999998 78999999999999999999999999999999875
Q ss_pred EEEEee
Q 031746 133 LRLQFS 138 (153)
Q Consensus 133 l~V~~a 138 (153)
|+|-..
T Consensus 185 iKVgrP 190 (544)
T KOG0124|consen 185 IKVGRP 190 (544)
T ss_pred ccccCC
Confidence 887643
No 54
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=2.8e-12 Score=105.38 Aligned_cols=80 Identities=21% Similarity=0.367 Sum_probs=72.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
...|.|.||||.+.+++|+.+|++||.+.+|.|... ..|+.+|||||.|....+|..|++.||+.+|++ |+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k----~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~g-----R~ 187 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRK----KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDG-----RP 187 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccC----CCCCccceEEEEEeeHHHHHHHHHhccCceecC-----ce
Confidence 468999999999999999999999999999988744 457777999999999999999999999999987 58
Q ss_pred EEEEeecCC
Q 031746 133 LRLQFSRNP 141 (153)
Q Consensus 133 l~V~~a~~~ 141 (153)
+-|.||..+
T Consensus 188 VAVDWAV~K 196 (678)
T KOG0127|consen 188 VAVDWAVDK 196 (678)
T ss_pred eEEeeeccc
Confidence 999999765
No 55
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.34 E-value=1e-11 Score=73.98 Aligned_cols=56 Identities=21% Similarity=0.438 Sum_probs=48.6
Q ss_pred HHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccEEEEee
Q 031746 70 VAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFS 138 (153)
Q Consensus 70 l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~V~~a 138 (153)
|.++|++||.|..+.+...+ +++|||+|.+.++|..|++.|||..+.+ ++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--------~~~a~V~f~~~~~A~~a~~~l~~~~~~g-----~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--------RGFAFVEFASVEDAQKAIEQLNGRQFNG-----RPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--------TTEEEEEESSHHHHHHHHHHHTTSEETT-----EEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCEECC-----cEEEEEEC
Confidence 68899999999999886543 3599999999999999999999999977 47999986
No 56
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.34 E-value=6.1e-12 Score=93.42 Aligned_cols=78 Identities=26% Similarity=0.422 Sum_probs=70.0
Q ss_pred CCeEEEcCCCCCCCHHHHHH----hhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031746 53 SSTLYVEGLPADSTKREVAH----IFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 128 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~----~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~ 128 (153)
..||||.||+..+..++|++ ||++||.|.+|... .+.+.+|-|||.|.+.+.|..|+..|+|+.+.|+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~------kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK-- 80 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF------KTPKMRGQAFVVFKETEAASAALRALQGFPFYGK-- 80 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec------CCCCccCceEEEecChhHHHHHHHHhcCCcccCc--
Confidence 45999999999999999888 99999999988765 2466788999999999999999999999999984
Q ss_pred CCccEEEEeecCC
Q 031746 129 DSKFLRLQFSRNP 141 (153)
Q Consensus 129 ~~r~l~V~~a~~~ 141 (153)
.++++||+.+
T Consensus 81 ---~mriqyA~s~ 90 (221)
T KOG4206|consen 81 ---PMRIQYAKSD 90 (221)
T ss_pred ---hhheecccCc
Confidence 7999999864
No 57
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.32 E-value=8.6e-12 Score=104.08 Aligned_cols=73 Identities=22% Similarity=0.395 Sum_probs=58.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCC------------CCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHh
Q 031746 51 DASSTLYVEGLPADSTKREVAHIFRPF------------VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL 118 (153)
Q Consensus 51 ~~~~~L~V~nLp~~~te~~l~~~F~~~------------G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l 118 (153)
.+.++|||||||+.+|+++|+++|.++ +.|..+.+ ++.+|||||+|.+.++|..|| .|
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~---------~~~kg~afVeF~~~e~A~~Al-~l 242 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI---------NKEKNFAFLEFRTVEEATFAM-AL 242 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE---------CCCCCEEEEEeCCHHHHhhhh-cC
Confidence 346899999999999999999999975 22333333 234579999999999999999 69
Q ss_pred CCCccCCCCCCCccEEEEee
Q 031746 119 QGYRMDEDDPDSKFLRLQFS 138 (153)
Q Consensus 119 ~g~~l~~~~~~~r~l~V~~a 138 (153)
||..|.+. .|+|...
T Consensus 243 ~g~~~~g~-----~l~v~r~ 257 (509)
T TIGR01642 243 DSIIYSNV-----FLKIRRP 257 (509)
T ss_pred CCeEeeCc-----eeEecCc
Confidence 99999874 5888644
No 58
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=5.9e-12 Score=103.48 Aligned_cols=80 Identities=25% Similarity=0.414 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHh-----CC-CccCC
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL-----QG-YRMDE 125 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l-----~g-~~l~~ 125 (153)
.+.+|||.|||+++|+++|.++|++||.|..+.++.++ .++.++|.|||.|.+...|.+||..- .| ..|.+
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k---~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDK---DTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEecc---CCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 46899999999999999999999999999999999888 78999999999999999999999765 34 55544
Q ss_pred CCCCCccEEEEeec
Q 031746 126 DDPDSKFLRLQFSR 139 (153)
Q Consensus 126 ~~~~~r~l~V~~a~ 139 (153)
|.|+|..+-
T Consensus 368 -----R~Lkv~~Av 376 (678)
T KOG0127|consen 368 -----RLLKVTLAV 376 (678)
T ss_pred -----cEEeeeecc
Confidence 689998875
No 59
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.29 E-value=6.9e-12 Score=90.48 Aligned_cols=85 Identities=12% Similarity=0.303 Sum_probs=74.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEE-EEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEV-RLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~-~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.+|||+||.+++.|..|+++|+.||.+... +++.+. .+|+++||+||.|.+.+.+.+|+..+||.-+.. +
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~---~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~n-----r 167 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDP---DTGNPKGFGFINYASFEASDAAIGSMNGQYLCN-----R 167 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccc---cCCCCCCCeEEechhHHHHHHHHHHhccchhcC-----C
Confidence 4789999999999999999999999998753 566665 679999999999999999999999999999977 4
Q ss_pred cEEEEeecCCCCCC
Q 031746 132 FLRLQFSRNPGPRS 145 (153)
Q Consensus 132 ~l~V~~a~~~~~r~ 145 (153)
++.|+++..+...+
T Consensus 168 ~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 168 PITVSYAFKKDTKG 181 (203)
T ss_pred ceEEEEEEecCCCc
Confidence 79999998654433
No 60
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.26 E-value=1.4e-11 Score=104.49 Aligned_cols=79 Identities=25% Similarity=0.487 Sum_probs=72.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
++|||||.|+..++|.||..+|+.||.|.+|.++... |||||......+|++|+..|+.+.+.. +.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R---------~cAfI~M~~RqdA~kalqkl~n~kv~~-----k~ 486 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR---------GCAFIKMVRRQDAEKALQKLSNVKVAD-----KT 486 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC---------ceeEEEEeehhHHHHHHHHHhcccccc-----ee
Confidence 5799999999999999999999999999999887553 599999999999999999999999977 47
Q ss_pred EEEEeecCCCCCC
Q 031746 133 LRLQFSRNPGPRS 145 (153)
Q Consensus 133 l~V~~a~~~~~r~ 145 (153)
|+|.|+..++++.
T Consensus 487 Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 487 IKIAWAVGKGPKS 499 (894)
T ss_pred eEEeeeccCCcch
Confidence 9999999888776
No 61
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.26 E-value=2.1e-11 Score=98.09 Aligned_cols=78 Identities=19% Similarity=0.366 Sum_probs=70.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhc-CCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFR-PFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~-~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
.+.+||.|+|+++.+.+|++||. +.|.|..|.++.|. +||++|||.|||.+++.+++|++.||.+.+.+ |
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~----~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~G-----R 114 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE----SGKARGCAVVEFKDPENVQKALEKLNKYEVNG-----R 114 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc----CCCcCCceEEEeeCHHHHHHHHHHhhhccccC-----c
Confidence 35699999999999999999998 57899999999884 79999999999999999999999999999987 5
Q ss_pred cEEEEeec
Q 031746 132 FLRLQFSR 139 (153)
Q Consensus 132 ~l~V~~a~ 139 (153)
+|.|.-..
T Consensus 115 ~l~vKEd~ 122 (608)
T KOG4212|consen 115 ELVVKEDH 122 (608)
T ss_pred eEEEeccC
Confidence 78887543
No 62
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.24 E-value=2.8e-11 Score=88.80 Aligned_cols=80 Identities=25% Similarity=0.409 Sum_probs=69.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCC-CCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPF-VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~-G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
..-+||..+|..+.+.++..+|.+| |.+..+++...+ ++|++||||||+|++.+.|.-|.+.||+|.|.++
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnk---rTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~----- 120 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNK---RTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH----- 120 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeeccc---ccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh-----
Confidence 4679999999999999999999999 666666665666 7899999999999999999999999999999885
Q ss_pred cEEEEeecC
Q 031746 132 FLRLQFSRN 140 (153)
Q Consensus 132 ~l~V~~a~~ 140 (153)
.|.+.+-.+
T Consensus 121 lL~c~vmpp 129 (214)
T KOG4208|consen 121 LLECHVMPP 129 (214)
T ss_pred eeeeEEeCc
Confidence 688877553
No 63
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.19 E-value=4.9e-10 Score=83.47 Aligned_cols=88 Identities=32% Similarity=0.532 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCC
Q 031746 50 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 129 (153)
Q Consensus 50 ~~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~ 129 (153)
+...+||||++||.++...+|..||..|-....+.+.... + ...-.+-++||.|.+...|..|++.|||..++-.+
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Ts-k-~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~-- 106 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTS-K-GDQVCKPVAFATFTSHQFALAAMNALNGVRFDPET-- 106 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeecc-C-CCccccceEEEEecchHHHHHHHHHhcCeeecccc--
Confidence 3447999999999999999999999999877766554322 1 11113459999999999999999999999998874
Q ss_pred CccEEEEeecCC
Q 031746 130 SKFLRLQFSRNP 141 (153)
Q Consensus 130 ~r~l~V~~a~~~ 141 (153)
+.+|++++++..
T Consensus 107 ~stLhiElAKSN 118 (284)
T KOG1457|consen 107 GSTLHIELAKSN 118 (284)
T ss_pred CceeEeeehhcC
Confidence 368999999864
No 64
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=8.9e-11 Score=94.77 Aligned_cols=75 Identities=17% Similarity=0.332 Sum_probs=67.9
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccEEE
Q 031746 56 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRL 135 (153)
Q Consensus 56 L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~V 135 (153)
|||.||+++++..+|.++|+.||.|++|++..+. .| ++|| ||+|++.+.|.+|++.|||..+.+. .|.|
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~----~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k-----ki~v 147 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE----NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGK-----KIYV 147 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC----CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCC-----eeEE
Confidence 9999999999999999999999999999999886 34 8999 9999999999999999999999885 4787
Q ss_pred EeecCC
Q 031746 136 QFSRNP 141 (153)
Q Consensus 136 ~~a~~~ 141 (153)
......
T Consensus 148 g~~~~~ 153 (369)
T KOG0123|consen 148 GLFERK 153 (369)
T ss_pred eeccch
Confidence 666543
No 65
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=5.5e-11 Score=90.62 Aligned_cols=86 Identities=26% Similarity=0.390 Sum_probs=75.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++||||-|...-.|||++.+|..||.|.+|.+.... .|.+|||+||.|.+..+|..||..|||..-... -+..
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~----dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpG--ASSS 92 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP----DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPG--ASSS 92 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC----CCCCCCceEEEeccchHHHHHHHHhcccccCCC--Cccc
Confidence 5889999999999999999999999999999998763 588999999999999999999999999765544 4467
Q ss_pred EEEEeecCCCCC
Q 031746 133 LRLQFSRNPGPR 144 (153)
Q Consensus 133 l~V~~a~~~~~r 144 (153)
|.|.|+...+.|
T Consensus 93 LVVK~ADTdkER 104 (371)
T KOG0146|consen 93 LVVKFADTDKER 104 (371)
T ss_pred eEEEeccchHHH
Confidence 999999865443
No 66
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.15 E-value=3.5e-11 Score=92.46 Aligned_cols=72 Identities=22% Similarity=0.337 Sum_probs=67.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
+.+|+||||.+.++.+||+..|++||.+.+++|+.+ |+||.|+-.++|..|++.|||.+++|+ +
T Consensus 78 stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-----------y~fvh~d~~eda~~air~l~~~~~~gk-----~ 141 (346)
T KOG0109|consen 78 STKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-----------YAFVHFDRAEDAVEAIRGLDNTEFQGK-----R 141 (346)
T ss_pred ccccccCCCCccccCHHHhhhhcccCCceeeeeecc-----------eeEEEEeeccchHHHHhcccccccccc-----e
Confidence 678999999999999999999999999999999865 999999999999999999999999875 6
Q ss_pred EEEEeecC
Q 031746 133 LRLQFSRN 140 (153)
Q Consensus 133 l~V~~a~~ 140 (153)
|+|+++..
T Consensus 142 m~vq~sts 149 (346)
T KOG0109|consen 142 MHVQLSTS 149 (346)
T ss_pred eeeeeecc
Confidence 99998864
No 67
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=5.5e-11 Score=94.02 Aligned_cols=82 Identities=16% Similarity=0.348 Sum_probs=73.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
-.++||..+.++++|+||+.+|+.||.|+.|.+.... .++..|||+|+||.+..+...|+..||=+.|.++ -
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~p---t~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQ-----y 281 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAP---TGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQ-----Y 281 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccC---CCCCccceeeEEeccccchHHHhhhcchhhcccc-----e
Confidence 4689999999999999999999999999999998886 5577899999999999999999999999999885 5
Q ss_pred EEEEeecCCC
Q 031746 133 LRLQFSRNPG 142 (153)
Q Consensus 133 l~V~~a~~~~ 142 (153)
|+|-.+..|+
T Consensus 282 LRVGk~vTPP 291 (544)
T KOG0124|consen 282 LRVGKCVTPP 291 (544)
T ss_pred EecccccCCC
Confidence 8887776553
No 68
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=2.1e-10 Score=96.72 Aligned_cols=81 Identities=27% Similarity=0.374 Sum_probs=68.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccE
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 133 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l 133 (153)
++|||.||++++|.++|..+|...|.|..+.|...+....--.+.||+||+|.+.++|..|++.|||+.|+++ .|
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH-----~l 590 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGH-----KL 590 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCc-----eE
Confidence 3499999999999999999999999999998875442111123669999999999999999999999999986 48
Q ss_pred EEEeec
Q 031746 134 RLQFSR 139 (153)
Q Consensus 134 ~V~~a~ 139 (153)
.|+++.
T Consensus 591 ~lk~S~ 596 (725)
T KOG0110|consen 591 ELKISE 596 (725)
T ss_pred EEEecc
Confidence 888887
No 69
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=4.7e-10 Score=87.98 Aligned_cols=74 Identities=19% Similarity=0.379 Sum_probs=63.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHH-hCCCccCCCCCCCc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSA-LQGYRMDEDDPDSK 131 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~-l~g~~l~~~~~~~r 131 (153)
..+|||++|...++|.+|+++|.+||.|..+.+.... ++|||+|.+.+.|+.|... +|-..|.+ +
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~---------~CAFv~ftTR~aAE~Aae~~~n~lvI~G-----~ 293 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK---------GCAFVTFTTREAAEKAAEKSFNKLVING-----F 293 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc---------ccceeeehhhHHHHHHHHhhcceeeecc-----e
Confidence 5789999999999999999999999999999998764 3899999999999999864 45444544 5
Q ss_pred cEEEEeecC
Q 031746 132 FLRLQFSRN 140 (153)
Q Consensus 132 ~l~V~~a~~ 140 (153)
+|+|.|+++
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 799999996
No 70
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=1.4e-10 Score=97.84 Aligned_cols=80 Identities=33% Similarity=0.458 Sum_probs=72.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
+..|+|-|||+..+-.+++.+|..||.+.+|++.... ..+..+|||||+|-++.+|.+|+..|.++.|.| |.
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~---~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyG-----Rr 684 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKI---GKGAHRGFGFVDFLTPREAKNAFDALGSTHLYG-----RR 684 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhh---cchhhccceeeeccCcHHHHHHHHhhcccceec-----hh
Confidence 5789999999999999999999999999999997653 336678999999999999999999999999988 46
Q ss_pred EEEEeecC
Q 031746 133 LRLQFSRN 140 (153)
Q Consensus 133 l~V~~a~~ 140 (153)
|.++|++.
T Consensus 685 LVLEwA~~ 692 (725)
T KOG0110|consen 685 LVLEWAKS 692 (725)
T ss_pred hheehhcc
Confidence 99999975
No 71
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.06 E-value=8.2e-10 Score=84.04 Aligned_cols=80 Identities=23% Similarity=0.350 Sum_probs=69.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
..+|+|.|||+.++++||++||.+||.+..+-+..+ +.|.+.|.|-|.|...++|..|++.|||..+++. .
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~----~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~-----~ 153 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD----RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGR-----P 153 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccC----CCCCCCccceeeecchHhHHHHHHHhcCcccCCc-----e
Confidence 367999999999999999999999997776666555 5788999999999999999999999999888774 5
Q ss_pred EEEEeecCC
Q 031746 133 LRLQFSRNP 141 (153)
Q Consensus 133 l~V~~a~~~ 141 (153)
|+++....+
T Consensus 154 mk~~~i~~~ 162 (243)
T KOG0533|consen 154 MKIEIISSP 162 (243)
T ss_pred eeeEEecCc
Confidence 888776544
No 72
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.03 E-value=1.7e-09 Score=87.38 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=65.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.|+|||.|||++.|++.|++-|..||.+....|+. .|+++| .|.|.++++|+.|+..|||..+.++ -
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadime------~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr-----~ 602 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME------NGKSKG--VVRFFSPEDAERACALMNGSRLDGR-----N 602 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhhc------cCCccc--eEEecCHHHHHHHHHHhccCcccCc-----e
Confidence 68899999999999999999999999999888853 367776 8999999999999999999999886 4
Q ss_pred EEEEee
Q 031746 133 LRLQFS 138 (153)
Q Consensus 133 l~V~~a 138 (153)
|+|.|.
T Consensus 603 I~V~y~ 608 (608)
T KOG4212|consen 603 IKVTYF 608 (608)
T ss_pred eeeeeC
Confidence 999874
No 73
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=99.03 E-value=1e-09 Score=83.39 Aligned_cols=80 Identities=16% Similarity=0.262 Sum_probs=71.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
...+||+|+.+.+|.++++..|+.||.|..+.+..++ ..|.+|||+||+|.+.+.++.|++ |||..|.+. .
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~---~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~-----~ 171 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDK---FRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGP-----A 171 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccc---cCCCcceeEEEecccHhhhHHHhh-cCCcccccc-----c
Confidence 5789999999999999999999999999988888887 567799999999999999999997 999999874 6
Q ss_pred EEEEeecCC
Q 031746 133 LRLQFSRNP 141 (153)
Q Consensus 133 l~V~~a~~~ 141 (153)
++|++.+-.
T Consensus 172 i~vt~~r~~ 180 (231)
T KOG4209|consen 172 IEVTLKRTN 180 (231)
T ss_pred ceeeeeeee
Confidence 888887643
No 74
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=1.5e-09 Score=87.77 Aligned_cols=74 Identities=24% Similarity=0.346 Sum_probs=67.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccE
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 133 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l 133 (153)
..|||| +++|+..|.++|+.+|.++++++..+. + +-|||||.|.++++|++|++.||...+.++ ++
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-----t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~-----~~ 67 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-----T-SLGYAYVNFQQPADAERALDTMNFDVLKGK-----PI 67 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-----C-ccceEEEecCCHHHHHHHHHHcCCcccCCc-----EE
Confidence 359999 999999999999999999999998774 3 789999999999999999999999999885 69
Q ss_pred EEEeecCC
Q 031746 134 RLQFSRNP 141 (153)
Q Consensus 134 ~V~~a~~~ 141 (153)
++.|+...
T Consensus 68 rim~s~rd 75 (369)
T KOG0123|consen 68 RIMWSQRD 75 (369)
T ss_pred EeehhccC
Confidence 99998743
No 75
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.01 E-value=8.9e-10 Score=91.46 Aligned_cols=81 Identities=16% Similarity=0.335 Sum_probs=72.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
+++|||+.|...+...+|+.||++||.|+-.+++.+. ++--.++|+||.+.+.++|.+||..||-++|.+ |.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNa---RsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG-----rm 476 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNA---RSPGARCYGFVTMSTSAEATKCIEHLHRTELHG-----RM 476 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecC---CCCCcceeEEEEecchHHHHHHHHHhhhhhhcc-----ee
Confidence 5789999999999999999999999999999998775 344457899999999999999999999999987 57
Q ss_pred EEEEeecCC
Q 031746 133 LRLQFSRNP 141 (153)
Q Consensus 133 l~V~~a~~~ 141 (153)
|.|+.+++.
T Consensus 477 ISVEkaKNE 485 (940)
T KOG4661|consen 477 ISVEKAKNE 485 (940)
T ss_pred eeeeecccC
Confidence 999999864
No 76
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.99 E-value=1.4e-09 Score=85.59 Aligned_cols=80 Identities=16% Similarity=0.294 Sum_probs=67.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
..++||+.||.+++++++++.|++||.|..+.++.+. ...+++||+||.|++.+++++++ ...-+.|.++ .
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~---~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk-----~ 167 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDK---TTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGK-----K 167 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecc---cccccccceeeEeccccccceec-ccceeeecCc-----e
Confidence 5689999999999999999999999999999888887 56788999999999999999887 4566666664 4
Q ss_pred EEEEeecCC
Q 031746 133 LRLQFSRNP 141 (153)
Q Consensus 133 l~V~~a~~~ 141 (153)
+.|..|.++
T Consensus 168 vevkrA~pk 176 (311)
T KOG4205|consen 168 VEVKRAIPK 176 (311)
T ss_pred eeEeeccch
Confidence 777766643
No 77
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.95 E-value=1e-09 Score=90.43 Aligned_cols=68 Identities=25% Similarity=0.310 Sum_probs=60.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 51 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 51 ~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
....+|+|-|||..+++++|..+|+.||.|+.|+....+ +|.+||+|.|..+|++|++.|++.++.++
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~--------~~~~~v~FyDvR~A~~Alk~l~~~~~~~~ 140 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK--------RGIVFVEFYDVRDAERALKALNRREIAGK 140 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc--------CceEEEEEeehHhHHHHHHHHHHHHhhhh
Confidence 346899999999999999999999999999987654443 35899999999999999999999999885
No 78
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.93 E-value=1.7e-09 Score=85.26 Aligned_cols=62 Identities=21% Similarity=0.371 Sum_probs=57.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHH
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALS 116 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~ 116 (153)
+.++||||+|+++++++.|++.|++||.|.++.++.+. .++.++||+||+|++.+....++.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~---~t~rsrgFgfv~f~~~~~v~~vl~ 66 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDP---STGRSRGFGFVTFATPEGVDAVLN 66 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccC---CCCCcccccceecCCCcchheeec
Confidence 46899999999999999999999999999999999987 568999999999999888888773
No 79
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=1.5e-09 Score=81.19 Aligned_cols=71 Identities=24% Similarity=0.441 Sum_probs=63.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccE
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 133 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l 133 (153)
..+|||+||+.+.+.+|++||..||.+.++.+.. ||+||+|++..+|+.|+..||+..|.+. .+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-----------gf~fv~fed~rda~Dav~~l~~~~l~~e-----~~ 65 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN-----------GFGFVEFEDPRDADDAVHDLDGKELCGE-----RL 65 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec-----------ccceeccCchhhhhcccchhcCceecce-----ee
Confidence 4699999999999999999999999999887742 3899999999999999999999999885 38
Q ss_pred EEEeecC
Q 031746 134 RLQFSRN 140 (153)
Q Consensus 134 ~V~~a~~ 140 (153)
.|+|++.
T Consensus 66 vve~~r~ 72 (216)
T KOG0106|consen 66 VVEHARG 72 (216)
T ss_pred eeecccc
Confidence 8999884
No 80
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.91 E-value=5.1e-09 Score=85.41 Aligned_cols=81 Identities=27% Similarity=0.459 Sum_probs=64.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 51 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 51 ~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
....+|||.|||+++++.+|+++|.+||.|....|.... .+++..+|+||+|.+.+.+..|+++- =..|.+
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~---~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~----- 356 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRS---PGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGG----- 356 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEec---cCCCcCceEEEEEeecchhhhhhhcC-ccccCC-----
Confidence 345679999999999999999999999999988877654 34555589999999999999998644 344443
Q ss_pred ccEEEEeecC
Q 031746 131 KFLRLQFSRN 140 (153)
Q Consensus 131 r~l~V~~a~~ 140 (153)
++|.|+--+.
T Consensus 357 ~kl~Veek~~ 366 (419)
T KOG0116|consen 357 RKLNVEEKRP 366 (419)
T ss_pred eeEEEEeccc
Confidence 4688876553
No 81
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.90 E-value=5.9e-09 Score=88.25 Aligned_cols=82 Identities=24% Similarity=0.289 Sum_probs=70.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+||++.++++.|-..|+.||+|..+++++.++.-.....+-|+||-|-+..+|++|++.|||..+... .
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~-----e 248 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY-----E 248 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee-----e
Confidence 47799999999999999999999999999999998753222233445899999999999999999999999875 5
Q ss_pred EEEEeec
Q 031746 133 LRLQFSR 139 (153)
Q Consensus 133 l~V~~a~ 139 (153)
+++-|++
T Consensus 249 ~K~gWgk 255 (877)
T KOG0151|consen 249 MKLGWGK 255 (877)
T ss_pred eeecccc
Confidence 8999984
No 82
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.87 E-value=1.1e-09 Score=81.32 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=63.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
.++|||+|+-..++|+.|.++|-+.|.|..|.|..++ .++.| ||||+|.++....-|++.+||..+.+.
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~----d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~ 77 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ----DQEQK-FAYVFFPNENSVQLAGQLENGDDLEED 77 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc----cCCCc-eeeeecccccchhhhhhhcccchhccc
Confidence 5899999999999999999999999999999887664 46677 999999999999999999999999875
No 83
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.82 E-value=6e-08 Score=64.13 Aligned_cols=84 Identities=20% Similarity=0.308 Sum_probs=69.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCC--CCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 54 STLYVEGLPADSTKREVAHIFRPF--VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~--G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+||=|-|+|...|.++|.+++... |...-+.+..|. .++.+.|||||.|.+.+.|.+-.+.++|..+...+ ..+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf---~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~-s~K 77 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDF---KNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFN-SKK 77 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeec---cCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCC-CCc
Confidence 578899999999999999887753 566667777776 56778999999999999999999999999998654 346
Q ss_pred cEEEEeecCC
Q 031746 132 FLRLQFSRNP 141 (153)
Q Consensus 132 ~l~V~~a~~~ 141 (153)
...|.||+-.
T Consensus 78 vc~i~yAriQ 87 (97)
T PF04059_consen 78 VCEISYARIQ 87 (97)
T ss_pred EEEEehhHhh
Confidence 7888988753
No 84
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.81 E-value=3.2e-08 Score=77.80 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=69.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEE--------EEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKE--------VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 124 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~--------~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~ 124 (153)
...|||+|||.++|-+++.++|+.||-|.. |++..++ .|+.||=|++.|-..++++-|++.|++..+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~----~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN----QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC----CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 466999999999999999999999998753 5565553 4999999999999999999999999999998
Q ss_pred CCCCCCccEEEEeecC
Q 031746 125 EDDPDSKFLRLQFSRN 140 (153)
Q Consensus 125 ~~~~~~r~l~V~~a~~ 140 (153)
+. .|+|+.|+.
T Consensus 210 g~-----~~rVerAkf 220 (382)
T KOG1548|consen 210 GK-----KLRVERAKF 220 (382)
T ss_pred Cc-----EEEEehhhh
Confidence 75 699999875
No 85
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.75 E-value=1.1e-08 Score=76.41 Aligned_cols=69 Identities=28% Similarity=0.523 Sum_probs=58.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 51 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 51 ~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
..+.+|||-||..++||++|+.+|+.|-....++|... +|. .++|++|++.+.|..|+..|+|..|...
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-----~g~--~vaf~~~~~~~~at~am~~lqg~~~s~~ 276 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-----GGM--PVAFADFEEIEQATDAMNHLQGNLLSSS 276 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-----CCc--ceEeecHHHHHHHHHHHHHhhcceeccc
Confidence 34679999999999999999999999988877666432 343 3899999999999999999999988654
No 86
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.66 E-value=2.9e-08 Score=75.24 Aligned_cols=77 Identities=18% Similarity=0.382 Sum_probs=69.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
-.+||+|.|..+++++.|-..|.+|-.....+++.++ ++|+++||+||.|.+..++..|+..|||.-+.. |+
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdk---RTgKSkgygfVSf~~pad~~rAmrem~gkyVgs-----rp 261 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDK---RTGKSKGYGFVSFRDPADYVRAMREMNGKYVGS-----RP 261 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccc---cccccccceeeeecCHHHHHHHHHhhccccccc-----ch
Confidence 4689999999999999999999999988888888888 899999999999999999999999999998865 45
Q ss_pred EEEEe
Q 031746 133 LRLQF 137 (153)
Q Consensus 133 l~V~~ 137 (153)
|++.-
T Consensus 262 iklRk 266 (290)
T KOG0226|consen 262 IKLRK 266 (290)
T ss_pred hHhhh
Confidence 66543
No 87
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.62 E-value=5.7e-07 Score=72.34 Aligned_cols=76 Identities=17% Similarity=0.279 Sum_probs=67.6
Q ss_pred CCeEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 53 SSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 53 ~~~L~V~nLp~-~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
.+.|-|.||.+ .+|.+.|..+|+-||.|..|+|+..+. .-|+|.|.+...|.-|++.|+|.+|.++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk--------d~ALIQmsd~~qAqLA~~hL~g~~l~gk----- 363 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK--------DNALIQMSDGQQAQLAMEHLEGHKLYGK----- 363 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC--------cceeeeecchhHHHHHHHHhhcceecCc-----
Confidence 47889999965 599999999999999999999987762 2599999999999999999999999984
Q ss_pred cEEEEeecCC
Q 031746 132 FLRLQFSRNP 141 (153)
Q Consensus 132 ~l~V~~a~~~ 141 (153)
.|+|.+++..
T Consensus 364 ~lrvt~SKH~ 373 (492)
T KOG1190|consen 364 KLRVTLSKHT 373 (492)
T ss_pred eEEEeeccCc
Confidence 6999999864
No 88
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.61 E-value=2e-07 Score=69.52 Aligned_cols=76 Identities=26% Similarity=0.608 Sum_probs=67.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+..+||+.|||.+++.+.|..+|.+|....+++++... ++.|||+|.+...|..|.+.|+|..|.-.+
T Consensus 145 pn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~--------~~iAfve~~~d~~a~~a~~~lq~~~it~~~---- 212 (221)
T KOG4206|consen 145 PNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR--------SGIAFVEFLSDRQASAAQQALQGFKITKKN---- 212 (221)
T ss_pred CceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC--------CceeEEecchhhhhHHHhhhhccceeccCc----
Confidence 36899999999999999999999999999999998764 248999999999999999999999997543
Q ss_pred cEEEEeec
Q 031746 132 FLRLQFSR 139 (153)
Q Consensus 132 ~l~V~~a~ 139 (153)
+++|.+++
T Consensus 213 ~m~i~~a~ 220 (221)
T KOG4206|consen 213 TMQITFAK 220 (221)
T ss_pred eEEecccC
Confidence 58888875
No 89
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.51 E-value=8.7e-08 Score=79.44 Aligned_cols=80 Identities=24% Similarity=0.426 Sum_probs=73.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.+.+||++||..+++.+++++...||.+...+++.+. .+|.++||||.+|.+..-...|+..|||..+.+. .
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~---~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~-----~ 360 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDS---ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK-----K 360 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeeccc---ccccccceeeeeeeCCcchhhhhcccchhhhcCc-----e
Confidence 5789999999999999999999999999999998887 6689999999999999999999999999999885 5
Q ss_pred EEEEeecC
Q 031746 133 LRLQFSRN 140 (153)
Q Consensus 133 l~V~~a~~ 140 (153)
|.|+.+..
T Consensus 361 lvvq~A~~ 368 (500)
T KOG0120|consen 361 LVVQRAIV 368 (500)
T ss_pred eEeehhhc
Confidence 88887753
No 90
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.43 E-value=1.5e-07 Score=77.81 Aligned_cols=80 Identities=19% Similarity=0.287 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 51 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 51 ~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
.+.+++|+..|+..+++.+|.+||+.+|.|.+|+++.++ .++.++|.+||+|.+.+....|+ .|.|..+.+.
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr---~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~---- 248 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDR---NSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGV---- 248 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccc---cchhhcceeEEEEecccchhhHh-hhcCCcccCc----
Confidence 346889999999999999999999999999999999987 67889999999999999999998 8999999885
Q ss_pred ccEEEEeec
Q 031746 131 KFLRLQFSR 139 (153)
Q Consensus 131 r~l~V~~a~ 139 (153)
+|.|..+.
T Consensus 249 -pv~vq~sE 256 (549)
T KOG0147|consen 249 -PVIVQLSE 256 (549)
T ss_pred -eeEecccH
Confidence 57777654
No 91
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.32 E-value=5.1e-06 Score=53.18 Aligned_cols=70 Identities=20% Similarity=0.277 Sum_probs=46.2
Q ss_pred CeEEEcCCCCCCCHHH----HHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCC
Q 031746 54 STLYVEGLPADSTKRE----VAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 129 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~----l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~ 129 (153)
..|||.|||.+.+... |+.|+..+|.=+ +.+. . +-|+|.|.+.+.|.+|.+.|+|..+.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkV-l~v~-~----------~tAilrF~~~~~A~RA~KRmegEdVfG~--- 67 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKV-LSVS-G----------GTAILRFPNQEFAERAQKRMEGEDVFGN--- 67 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--E-EE---T----------T-EEEEESSHHHHHHHHHHHTT--SSSS---
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEE-EEEe-C----------CEEEEEeCCHHHHHHHHHhhcccccccc---
Confidence 4699999999988876 556777887521 2222 1 2699999999999999999999999986
Q ss_pred CccEEEEeecC
Q 031746 130 SKFLRLQFSRN 140 (153)
Q Consensus 130 ~r~l~V~~a~~ 140 (153)
.|.|+|.+.
T Consensus 68 --kI~v~~~~~ 76 (90)
T PF11608_consen 68 --KISVSFSPK 76 (90)
T ss_dssp ----EEESS--
T ss_pred --eEEEEEcCC
Confidence 499998753
No 92
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.31 E-value=7.4e-07 Score=70.48 Aligned_cols=82 Identities=18% Similarity=0.326 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEE--------EEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKE--------VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM 123 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~--------~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l 123 (153)
...++||-+||..+++++|.++|.+++.|.. |.+.+++ .++++||-|.|.|++...|+.|+..+++..+
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dk---eT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDK---ETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccc---cccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 3678999999999999999999999998742 3333333 6899999999999999999999999999999
Q ss_pred CCCCCCCccEEEEeecCC
Q 031746 124 DEDDPDSKFLRLQFSRNP 141 (153)
Q Consensus 124 ~~~~~~~r~l~V~~a~~~ 141 (153)
.++ +|+|.++...
T Consensus 142 ~gn-----~ikvs~a~~r 154 (351)
T KOG1995|consen 142 CGN-----TIKVSLAERR 154 (351)
T ss_pred cCC-----Cchhhhhhhc
Confidence 984 5899888653
No 93
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.30 E-value=2.1e-06 Score=69.17 Aligned_cols=77 Identities=21% Similarity=0.358 Sum_probs=64.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
+.+|..+|+|.+++||+|+.+|.+.|...+......+++ -++++.+++.++|..|+..++.+.+.+.+ .
T Consensus 414 satlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~-------kmal~q~~sveeA~~ali~~hnh~lgen~----h 482 (492)
T KOG1190|consen 414 SATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDR-------KMALPQLESVEEAIQALIDLHNHYLGENH----H 482 (492)
T ss_pred hhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCc-------ceeecccCChhHhhhhccccccccCCCCc----e
Confidence 679999999999999999999999998765533332221 29999999999999999999999998775 5
Q ss_pred EEEEeecC
Q 031746 133 LRLQFSRN 140 (153)
Q Consensus 133 l~V~~a~~ 140 (153)
|+|+|++.
T Consensus 483 lRvSFSks 490 (492)
T KOG1190|consen 483 LRVSFSKS 490 (492)
T ss_pred EEEEeecc
Confidence 99999974
No 94
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.22 E-value=2e-06 Score=67.40 Aligned_cols=82 Identities=26% Similarity=0.297 Sum_probs=70.5
Q ss_pred CCeEE-EcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 53 SSTLY-VEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 53 ~~~L~-V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
..++| |++|++.+++++|+.+|..+|.|..+++..+. .++.++||+||+|.+...+..++.. +...+.+ +
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~---~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~-----~ 254 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDE---ESGDSKGFAYVDFSAGNSKKLALND-QTRSIGG-----R 254 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCC---CccchhhhhhhhhhhchhHHHHhhc-ccCcccC-----c
Confidence 45555 99999999999999999999999999998877 7899999999999999999988876 7777765 5
Q ss_pred cEEEEeecCCCC
Q 031746 132 FLRLQFSRNPGP 143 (153)
Q Consensus 132 ~l~V~~a~~~~~ 143 (153)
++.+++..+.+.
T Consensus 255 ~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 255 PLRLEEDEPRPK 266 (285)
T ss_pred ccccccCCCCcc
Confidence 799998876533
No 95
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.16 E-value=1.9e-06 Score=68.32 Aligned_cols=72 Identities=11% Similarity=0.195 Sum_probs=61.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCC--CeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 128 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G--~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~ 128 (153)
.+||||||-|++|++||-+.+...| .|.++++..++ ..|.+||||+|...+.....+.++.|--+.|.++++
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR---~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P 154 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENR---TNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSP 154 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcc---cCCcccceEEEEecchHHHHHHHHhcccceecCCCC
Confidence 4799999999999999998887665 34556666555 579999999999999999999999999999999864
No 96
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.13 E-value=1e-05 Score=66.48 Aligned_cols=74 Identities=18% Similarity=0.329 Sum_probs=57.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
..-|-+-.|||++|++||.+||+.++ |.++.+... +|++.|=|||||.+.+++++|++ .|-..+.. |-
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~-----~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~-----RY 77 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR-----NGRPSGEAYVEFTSEEDVEKALK-KDRESMGH-----RY 77 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc-----CCCcCcceEEEeechHHHHHHHH-hhHHHhCC-----ce
Confidence 34566789999999999999999986 777655543 47888899999999999999994 56555544 34
Q ss_pred EEEEee
Q 031746 133 LRLQFS 138 (153)
Q Consensus 133 l~V~~a 138 (153)
|.|=-+
T Consensus 78 IEVf~~ 83 (510)
T KOG4211|consen 78 IEVFTA 83 (510)
T ss_pred EEEEcc
Confidence 666433
No 97
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.11 E-value=1.9e-05 Score=63.16 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=65.4
Q ss_pred CCeEEEcCCC--CCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 53 SSTLYVEGLP--ADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 53 ~~~L~V~nLp--~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
.+.|.+.=|. +.+|-+-|..+....|+|..|.|+... | .-|.|||++.+.|++|...|||..|....
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-----g---VQAmVEFdsv~~AqrAk~alNGADIYsGC--- 188 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-----G---VQAMVEFDSVEVAQRAKAALNGADIYSGC--- 188 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc-----c---eeeEEeechhHHHHHHHhhcccccccccc---
Confidence 5666666554 579999999999999999998887543 2 36999999999999999999999998865
Q ss_pred ccEEEEeecCC
Q 031746 131 KFLRLQFSRNP 141 (153)
Q Consensus 131 r~l~V~~a~~~ 141 (153)
++|||+|+++.
T Consensus 189 CTLKIeyAkP~ 199 (494)
T KOG1456|consen 189 CTLKIEYAKPT 199 (494)
T ss_pred eeEEEEecCcc
Confidence 68999999853
No 98
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.08 E-value=1.4e-05 Score=53.71 Aligned_cols=59 Identities=22% Similarity=0.344 Sum_probs=39.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 121 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~ 121 (153)
+.|+|.+++..++-++|+++|++||.|..|.+.... . -|||-|.+.+.|..|+..+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~---~------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD---T------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT----S------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC---C------EEEEEECCcchHHHHHHHHHhc
Confidence 678999999999999999999999999988886543 1 6999999999999999876654
No 99
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=1.3e-05 Score=66.87 Aligned_cols=77 Identities=21% Similarity=0.331 Sum_probs=62.1
Q ss_pred CCeEEEcCCCCCCCH------HHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 53 SSTLYVEGLPADSTK------REVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 53 ~~~L~V~nLp~~~te------~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
...++|.|+|---.. .-|.++|+++|+|+.+.+..+. .|..+||.|++|.+..+|+.|++.|||+.|+-+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e----~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE----EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc----cCCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 467999999853222 2466889999999998887665 345899999999999999999999999999877
Q ss_pred CCCCccEEEEe
Q 031746 127 DPDSKFLRLQF 137 (153)
Q Consensus 127 ~~~~r~l~V~~ 137 (153)
+ ++.|..
T Consensus 134 H----tf~v~~ 140 (698)
T KOG2314|consen 134 H----TFFVRL 140 (698)
T ss_pred c----eEEeeh
Confidence 5 466654
No 100
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.07 E-value=3.2e-05 Score=66.10 Aligned_cols=77 Identities=21% Similarity=0.341 Sum_probs=62.7
Q ss_pred CC-eEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 53 SS-TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 53 ~~-~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
++ .|-+-|+|++++-+||.+||..|-.+-.-.++... ..|++.|-|.|-|++.++|.+|...|++.+|..+
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n---d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr----- 937 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN---DDGVPTGECMVAFESQEEARRASMDLDGQKIRNR----- 937 (944)
T ss_pred CCeEEEecCCCccccHHHHHHHhcccccCCCceeEeec---CCCCcccceeEeecCHHHHHhhhhccccCcccce-----
Confidence 44 68889999999999999999999776543333333 4588889999999999999999999999999874
Q ss_pred cEEEEe
Q 031746 132 FLRLQF 137 (153)
Q Consensus 132 ~l~V~~ 137 (153)
+++|.+
T Consensus 938 ~V~l~i 943 (944)
T KOG4307|consen 938 VVSLRI 943 (944)
T ss_pred eEEEEe
Confidence 566543
No 101
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.00 E-value=7.4e-06 Score=61.42 Aligned_cols=71 Identities=21% Similarity=0.272 Sum_probs=59.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
..+.|.|-|++.++.+.+|.+.|.++|.+...... .+++||+|...++|.+|+..|++.++.++
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-----------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~----- 161 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-----------RNFAFVEFSEQEDAKRALEKLDGKKLNGR----- 161 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-----------ccccceeehhhhhhhhcchhccchhhcCc-----
Confidence 35789999999999999999999999998544331 12899999999999999999999999885
Q ss_pred cEEEEee
Q 031746 132 FLRLQFS 138 (153)
Q Consensus 132 ~l~V~~a 138 (153)
.|++.+.
T Consensus 162 ~l~~~~~ 168 (216)
T KOG0106|consen 162 RISVEKN 168 (216)
T ss_pred eeeeccc
Confidence 5777543
No 102
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.89 E-value=5.1e-05 Score=60.11 Aligned_cols=81 Identities=19% Similarity=0.363 Sum_probs=61.0
Q ss_pred CeEEEcCCCCCCCHHH----H--HHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 031746 54 STLYVEGLPADSTKRE----V--AHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 127 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~----l--~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~ 127 (153)
.-+||-.||+.+..|+ | .++|+|||.|..|.+-...+-..+....--.||.|.+.++|.+|+.+.+|..++|
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG-- 192 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG-- 192 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC--
Confidence 5689999998887776 2 3789999999988775433111111111225999999999999999999999987
Q ss_pred CCCccEEEEeec
Q 031746 128 PDSKFLRLQFSR 139 (153)
Q Consensus 128 ~~~r~l~V~~a~ 139 (153)
|.|+..|..
T Consensus 193 ---r~lkatYGT 201 (480)
T COG5175 193 ---RVLKATYGT 201 (480)
T ss_pred ---ceEeeecCc
Confidence 479998864
No 103
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.88 E-value=2.6e-05 Score=65.55 Aligned_cols=78 Identities=23% Similarity=0.316 Sum_probs=64.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
.++.|||.||-.-+|.-+|+.|+..-|.++.- +|+++-|. .|||.|.+.++|.....+|||..+...++ +
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee-~WmDkIKS-------hCyV~yss~eEA~atr~AlhnV~WP~sNP--K 512 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEE-FWMDKIKS-------HCYVSYSSVEEAAATREALHNVQWPPSNP--K 512 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHH-HHHHHhhc-------ceeEecccHHHHHHHHHHHhccccCCCCC--c
Confidence 46899999999999999999999966655422 25555332 69999999999999999999999999876 8
Q ss_pred cEEEEeec
Q 031746 132 FLRLQFSR 139 (153)
Q Consensus 132 ~l~V~~a~ 139 (153)
.|-+.|..
T Consensus 513 ~L~adf~~ 520 (718)
T KOG2416|consen 513 HLIADFVR 520 (718)
T ss_pred eeEeeecc
Confidence 89999874
No 104
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.76 E-value=0.00019 Score=59.12 Aligned_cols=68 Identities=22% Similarity=0.368 Sum_probs=52.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEE-EEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKE-VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 125 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~-~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~ 125 (153)
...|-+-.||+.+|++||.+||+-.--+.. +-++.+ ..+++.|=|||.|++.+.|++|+ .-|...|..
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d----~rgR~tGEAfVqF~sqe~ae~Al-~rhre~iGh 171 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD----QRGRPTGEAFVQFESQESAEIAL-GRHRENIGH 171 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeecc----CCCCcccceEEEecCHHHHHHHH-HHHHHhhcc
Confidence 356888999999999999999997654444 333333 34678889999999999999998 455556654
No 105
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.73 E-value=6.1e-05 Score=61.14 Aligned_cols=69 Identities=25% Similarity=0.336 Sum_probs=55.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeec---CCccCCCCc-------ceEEEEEeCCHHHHHHHHHHhCC
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK---ESKLRGGDP-------LILCFVDFENPACAATALSALQG 120 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~---~~~~~~g~~-------kg~~fV~f~~~~~a~~A~~~l~g 120 (153)
++++|.+.|||.+-.-+.|.++|+.+|.|..|+|... ....++..+ +-+|+|+|+..+.|.+|.+.|+-
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 3799999999999988999999999999999998765 111111222 45799999999999999987754
No 106
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.72 E-value=0.00033 Score=56.25 Aligned_cols=77 Identities=13% Similarity=0.182 Sum_probs=66.3
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 52 ASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 52 ~~~~L~V~nLp~~-~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
+++.+-|..|... ++-+-|..+|-.||.|..|+++..+ . |-|.|+..|....++|+..||+..+.+.
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk---~-----gtamVemgd~~aver~v~hLnn~~lfG~---- 353 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK---P-----GTAMVEMGDAYAVERAVTHLNNIPLFGG---- 353 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc---c-----ceeEEEcCcHHHHHHHHHHhccCccccc----
Confidence 4788999999765 7777899999999999999999776 2 3699999999999999999999999886
Q ss_pred ccEEEEeecCC
Q 031746 131 KFLRLQFSRNP 141 (153)
Q Consensus 131 r~l~V~~a~~~ 141 (153)
+|.|.+++..
T Consensus 354 -kl~v~~SkQ~ 363 (494)
T KOG1456|consen 354 -KLNVCVSKQN 363 (494)
T ss_pred -eEEEeecccc
Confidence 4888888753
No 107
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.66 E-value=3.7e-05 Score=58.62 Aligned_cols=75 Identities=15% Similarity=0.221 Sum_probs=60.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCc-----cCCCCcceE----EEEEeCCHHHHHHHHHHhCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESK-----LRGGDPLIL----CFVDFENPACAATALSALQGYRM 123 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~-----~~~g~~kg~----~fV~f~~~~~a~~A~~~l~g~~l 123 (153)
...||+++||+.+...-|+++|++||.|-.|.+...... ...|.+..+ +.|+|.+...|..+...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 468999999999999999999999999988887765411 011222222 56899999999999999999999
Q ss_pred CCCC
Q 031746 124 DEDD 127 (153)
Q Consensus 124 ~~~~ 127 (153)
.|++
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9875
No 108
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.65 E-value=0.0023 Score=47.00 Aligned_cols=63 Identities=13% Similarity=0.142 Sum_probs=56.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 125 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~ 125 (153)
...+.|+.||+.-++++|+++..+.|.+....+..+- ++.|+|...++.+.|+..|+..++..
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg----------~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG----------VGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc----------ceeeeeeehhhHHHHHHhhccccccC
Confidence 4789999999999999999999999999988887653 89999999999999999999887754
No 109
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.65 E-value=8.5e-05 Score=65.02 Aligned_cols=77 Identities=18% Similarity=0.311 Sum_probs=68.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.+.+|++.|+.|+....|...|..||.|..|.+-... -|++|.|++...+..|++.|-|..|.+.+ +.
T Consensus 455 ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq---------~yayi~yes~~~aq~a~~~~rgap~G~P~---~r 522 (975)
T KOG0112|consen 455 TTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ---------PYAYIQYESPPAAQAATHDMRGAPLGGPP---RR 522 (975)
T ss_pred ceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC---------cceeeecccCccchhhHHHHhcCcCCCCC---cc
Confidence 5789999999999999999999999999987764332 29999999999999999999999999854 67
Q ss_pred EEEEeecCC
Q 031746 133 LRLQFSRNP 141 (153)
Q Consensus 133 l~V~~a~~~ 141 (153)
|+|.|+..+
T Consensus 523 ~rvdla~~~ 531 (975)
T KOG0112|consen 523 LRVDLASPP 531 (975)
T ss_pred cccccccCC
Confidence 999999865
No 110
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.0003 Score=58.34 Aligned_cols=67 Identities=28% Similarity=0.330 Sum_probs=48.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcce---EEEEEeCCHHHHHHHHHHhC
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLI---LCFVDFENPACAATALSALQ 119 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg---~~fV~f~~~~~a~~A~~~l~ 119 (153)
-+++||||.||++++|++|...|.+||.+. |...........--++| |+|+.|+++.+...-+.+..
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 367899999999999999999999999865 33321111111123667 99999999888776665443
No 111
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.58 E-value=0.00019 Score=42.19 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=40.2
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHH
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 115 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~ 115 (153)
+.|-|.+.+++..+. +..+|.+||.|.++.+.... -+.+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~---------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPEST---------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCC---------cEEEEEECCHHHHHhhC
Confidence 457788888776655 45588899999998775221 18999999999999985
No 112
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.52 E-value=0.00088 Score=42.88 Aligned_cols=55 Identities=18% Similarity=0.356 Sum_probs=42.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 119 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~ 119 (153)
....||+ .|.+....||.++|+.||.|. |..+.+. -|||...+.+.|..++..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT----------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT----------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT----------EEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC----------cEEEEeecHHHHHHHHHHhc
Confidence 3556676 999999999999999999976 4454443 69999999999999998886
No 113
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.47 E-value=8.7e-05 Score=60.35 Aligned_cols=79 Identities=22% Similarity=0.238 Sum_probs=59.2
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccE
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 133 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l 133 (153)
+.||++||.+.++..+|+.+|...---..-.++.. .||+||++.+..+|.+|++.|+|..-... +++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k---------~gyafvd~pdq~wa~kaie~~sgk~elqG----kr~ 68 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK---------SGYAFVDCPDQQWANKAIETLSGKVELQG----KRQ 68 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee---------cceeeccCCchhhhhhhHHhhchhhhhcC----cee
Confidence 57999999999999999999986421111122222 24999999999999999999999765543 469
Q ss_pred EEEeecCCCCCC
Q 031746 134 RLQFSRNPGPRS 145 (153)
Q Consensus 134 ~V~~a~~~~~r~ 145 (153)
.|+.+.++..|+
T Consensus 69 e~~~sv~kkqrs 80 (584)
T KOG2193|consen 69 EVEHSVPKKQRS 80 (584)
T ss_pred eccchhhHHHHh
Confidence 999887655443
No 114
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.00092 Score=55.52 Aligned_cols=66 Identities=30% Similarity=0.313 Sum_probs=56.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhc-CCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHH
Q 031746 48 LPPDASSTLYVEGLPADSTKREVAHIFR-PFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALS 116 (153)
Q Consensus 48 ~~~~~~~~L~V~nLp~~~te~~l~~~F~-~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~ 116 (153)
.+-++.+|||||.||.-++.++|..+|+ -||.|+.+-|-.|. .=+.++|-|=|.|.+..+-.+||.
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~---k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDP---KLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCc---ccCCCCCcceeeecccHHHHHHHh
Confidence 3445689999999999999999999999 79999998887774 236788899999999998888884
No 115
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.24 E-value=0.0013 Score=55.03 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=46.0
Q ss_pred HHHhhcCCCCeEEEEEeec-CCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccEEEEe
Q 031746 70 VAHIFRPFVGYKEVRLVIK-ESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQF 137 (153)
Q Consensus 70 l~~~F~~~G~i~~~~~~~~-~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~V~~ 137 (153)
++.-++.||.|..|.+... ... ...-..|-.||+|.+.+++++|.+.|+|.++.++ ++..+|
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~-~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR-----tVvtsY 488 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDE-NPVPGTGKVFVEFADTEDSQRAMEELTGRKFANR-----TVVASY 488 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCC-CcCCCcccEEEEecChHHHHHHHHHccCceeCCc-----EEEEEe
Confidence 3444668999999988765 211 1222345799999999999999999999999884 555555
No 116
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.18 E-value=0.00021 Score=62.35 Aligned_cols=78 Identities=23% Similarity=0.272 Sum_probs=66.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccE
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 133 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l 133 (153)
..|||.|+|+.-|.++|+.++..+|.+.+++++.. ..|+++|.+||.|.+..++.+++...+...+...+ +
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~----r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~-----~ 807 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV----RAGKPKGKARVDYNTEADASRKVASVDVAGKRENN-----G 807 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhh----hccccccceeccCCCcchhhhhcccchhhhhhhcC-----c
Confidence 46999999999999999999999999998887655 46999999999999999999999888877776653 6
Q ss_pred EEEeecC
Q 031746 134 RLQFSRN 140 (153)
Q Consensus 134 ~V~~a~~ 140 (153)
.|..+.+
T Consensus 808 ~v~vsnp 814 (881)
T KOG0128|consen 808 EVQVSNP 814 (881)
T ss_pred cccccCC
Confidence 6666543
No 117
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.15 E-value=0.0016 Score=51.84 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=57.4
Q ss_pred CCCeEEEcCCC----CCCCH-------HHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 031746 52 ASSTLYVEGLP----ADSTK-------REVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG 120 (153)
Q Consensus 52 ~~~~L~V~nLp----~~~te-------~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g 120 (153)
..++|.+.||= +..+. ++|.+-.++||.|..|.+... .+.|.+.|.|.+.+.|..|++.|+|
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~-------hPdGvvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR-------HPDGVVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc-------CCCceeEEEeCChHHHHHHHHHhcC
Confidence 35889898872 23443 345556889999999877532 2456999999999999999999999
Q ss_pred CccCCCCCCCccEEEEeec
Q 031746 121 YRMDEDDPDSKFLRLQFSR 139 (153)
Q Consensus 121 ~~l~~~~~~~r~l~V~~a~ 139 (153)
..+.++ .|..++..
T Consensus 337 R~fdgR-----ql~A~i~D 350 (382)
T KOG1548|consen 337 RWFDGR-----QLTASIWD 350 (382)
T ss_pred eeecce-----EEEEEEeC
Confidence 999884 57766543
No 118
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.89 E-value=0.0012 Score=53.38 Aligned_cols=72 Identities=17% Similarity=0.222 Sum_probs=56.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
..|-|.||.+.+|.++++.||+..|.|.+++++.......--...-.|||.|.|...+..| +.|.++++-+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtntvfvdr 79 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTNTVFVDR 79 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhccceeeee
Confidence 4789999999999999999999999999999887431111122334799999999998887 47777777553
No 119
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.81 E-value=0.0034 Score=45.95 Aligned_cols=87 Identities=11% Similarity=0.135 Sum_probs=55.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcC-CCCe---EEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRP-FVGY---KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 128 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~-~G~i---~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~ 128 (153)
...|.|-+||+.+|++++.+.+.. ++.. ..+.-...... ..-..-.-|||.|.+.+++..=...++|+.+.+.+.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~-~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKS-FKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SS-STTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCcc-CCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 578999999999999999998877 6665 22221111100 001123469999999999999999999999987754
Q ss_pred CCccEEEEeecC
Q 031746 129 DSKFLRLQFSRN 140 (153)
Q Consensus 129 ~~r~l~V~~a~~ 140 (153)
....-.|++|..
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 445678888875
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.81 E-value=0.0033 Score=54.27 Aligned_cols=82 Identities=21% Similarity=0.227 Sum_probs=60.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEE-EEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 48 LPPDASSTLYVEGLPADSTKREVAHIFRPFVGYKE-VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 48 ~~~~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~-~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
.|...+.+|||-.||+.+++.++.++|...-.|++ |.+... .+++.++.|||+|..++++.+|...-+.+-+..
T Consensus 429 ~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~----P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~- 503 (944)
T KOG4307|consen 429 FPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL----PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGH- 503 (944)
T ss_pred CCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC----CcccccchhhheeccccccchhhhcccccccCc-
Confidence 44455789999999999999999999998887877 444433 356677899999999888888874333333322
Q ss_pred CCCCccEEEEee
Q 031746 127 DPDSKFLRLQFS 138 (153)
Q Consensus 127 ~~~~r~l~V~~a 138 (153)
|.|+|.-.
T Consensus 504 ----r~irv~si 511 (944)
T KOG4307|consen 504 ----RIIRVDSI 511 (944)
T ss_pred ----eEEEeech
Confidence 46888644
No 121
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.77 E-value=0.0001 Score=64.15 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=56.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM 123 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l 123 (153)
.++||+||+..+.+++|...|..+|.+..+++.... ..++.+|+||++|...+.+.+|+...++..+
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~---n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHK---NEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHh---hccccccceeeEeecCCchhhhhhhhhhhhh
Confidence 578999999999999999999999998877766322 4588999999999999999999965555444
No 122
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.74 E-value=0.01 Score=39.47 Aligned_cols=78 Identities=21% Similarity=0.271 Sum_probs=49.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCC------ccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKES------KLRGGDPLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~------~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
.+.|.|-+.|+. ....+-+.|++||.|.+..-..... ...++ ...-.|.|+++.+|.+|| ..||..+.+.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~--~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~ 81 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSG--GNWIHITYDNPLSAQRAL-QKNGTIFSGS 81 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CC--TTEEEEEESSHHHHHHHH-TTTTEEETTC
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCC--CCEEEEECCCHHHHHHHH-HhCCeEEcCc
Confidence 456778888888 4566788999999998764110000 00011 238999999999999999 7999999874
Q ss_pred CCCCccEEEEee
Q 031746 127 DPDSKFLRLQFS 138 (153)
Q Consensus 127 ~~~~r~l~V~~a 138 (153)
-.+-|.+.
T Consensus 82 ----~mvGV~~~ 89 (100)
T PF05172_consen 82 ----LMVGVKPC 89 (100)
T ss_dssp ----EEEEEEE-
T ss_pred ----EEEEEEEc
Confidence 23445554
No 123
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.68 E-value=0.0095 Score=36.08 Aligned_cols=53 Identities=21% Similarity=0.357 Sum_probs=43.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCC----CCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHh
Q 031746 54 STLYVEGLPADSTKREVAHIFRPF----VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL 118 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~----G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l 118 (153)
..|+|.++ .+++.++|+.+|..| +. ..|..+.+. -|-|.|.+.+.|.+|+..|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt----------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGP-FRIEWIDDT----------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCC-ceEEEecCC----------cEEEEECCHHHHHHHHHcC
Confidence 57899888 458889999999998 53 467777665 4899999999999999764
No 124
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.62 E-value=0.018 Score=46.64 Aligned_cols=59 Identities=32% Similarity=0.384 Sum_probs=46.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCC----CCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHH
Q 031746 54 STLYVEGLPADSTKREVAHIFRPF----VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALS 116 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~----G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~ 116 (153)
-.|-...||++.++.++.+||... |....|-++.. ..|++.|=|||.|..+++|+.|+.
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r----pdgrpTGdAFvlfa~ee~aq~aL~ 224 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR----PDGRPTGDAFVLFACEEDAQFALR 224 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC----CCCCcccceEEEecCHHHHHHHHH
Confidence 356668999999999999999742 33455655554 347778899999999999999984
No 125
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.47 E-value=0.0078 Score=48.73 Aligned_cols=75 Identities=19% Similarity=0.339 Sum_probs=59.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEE---EEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKE---VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 129 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~---~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~ 129 (153)
..+|-+..||+..+.|+|-+||..|..-.. |.++.+. .|.+.|-|||+|.+.+.|..|....+.+.+..
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~----qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~---- 351 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG----QGRPSGEAFIQMRNAERARAAAQKCHKKLMKS---- 351 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC----CCCcChhhhhhhhhhHHHHHHHHHHHHhhccc----
Confidence 467889999999999999999998865432 5555553 47788899999999999999998888776633
Q ss_pred CccEEEE
Q 031746 130 SKFLRLQ 136 (153)
Q Consensus 130 ~r~l~V~ 136 (153)
|-|.|=
T Consensus 352 -RYiEvf 357 (508)
T KOG1365|consen 352 -RYIEVF 357 (508)
T ss_pred -ceEEEe
Confidence 456653
No 126
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.39 E-value=0.014 Score=41.30 Aligned_cols=54 Identities=24% Similarity=0.392 Sum_probs=42.9
Q ss_pred HHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccEEEEeec
Q 031746 69 EVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSR 139 (153)
Q Consensus 69 ~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~V~~a~ 139 (153)
+|-+.|.+||.+.=++++.+. -.|.|.+-+.|.+|+ .++|.++.++ .|+|..-.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~~-----------mwVTF~dg~sALaal-s~dg~~v~g~-----~l~i~LKt 105 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGDT-----------MWVTFRDGQSALAAL-SLDGIQVNGR-----TLKIRLKT 105 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETTC-----------EEEEESSCHHHHHHH-HGCCSEETTE-----EEEEEE--
T ss_pred HHHHHHHhCCceEEEEEeCCe-----------EEEEECccHHHHHHH-ccCCcEECCE-----EEEEEeCC
Confidence 566778899998878887543 789999999999998 7999999874 68887654
No 127
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.27 E-value=0.0049 Score=47.27 Aligned_cols=63 Identities=21% Similarity=0.285 Sum_probs=53.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG 120 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g 120 (153)
..|||-||+..++.+.|..-|+.||.|....++.|. .+++.+=++|+|...-.|.+|+..++-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~----r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD----RGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc----cccccccchhhhhcchhHHHHHHHhcc
Confidence 579999999999999999999999999876555553 355666799999999999999987743
No 128
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.26 E-value=0.0019 Score=56.94 Aligned_cols=70 Identities=20% Similarity=0.206 Sum_probs=59.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
+.+||+|||+..+++.+|+..|..+|.+.+|.|-....+. + --|+||.|.+...+-.|+..+.+..|...
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~--e--sa~~f~~~~n~dmtp~ak~e~s~~~I~~g 441 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKT--E--SAYAFVSLLNTDMTPSAKFEESGPLIGNG 441 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCc--c--cchhhhhhhccccCcccchhhcCCccccC
Confidence 6899999999999999999999999999998886543221 1 12899999999999999999999888664
No 129
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.82 E-value=0.29 Score=33.03 Aligned_cols=69 Identities=12% Similarity=0.204 Sum_probs=49.7
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031746 55 TLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 128 (153)
Q Consensus 55 ~L~V~nLp~~~te~~l~~~F~~~G-~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~ 128 (153)
.+.+...|..++.++|..+.+.+- .|..++++.+. ..++-.+++.|.+.++|+.=.+.+||+.+..-++
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~-----~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEp 84 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG-----TPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEP 84 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC-----CCceEEEEEEECCHHHHHHHHHHhCCCccCCCCC
Confidence 344455555666667766666553 45677887664 2356689999999999999999999999976544
No 130
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.79 E-value=0.019 Score=48.27 Aligned_cols=85 Identities=14% Similarity=0.261 Sum_probs=60.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcC----------------------------CCCeEEEEEeecCCccCCCCcceEEEEE
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRP----------------------------FVGYKEVRLVIKESKLRGGDPLILCFVD 104 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~----------------------------~G~i~~~~~~~~~~~~~~g~~kg~~fV~ 104 (153)
..++-|.|+|...+..+|..+... .|.-..+.+..|- ....+.|||||.
T Consensus 361 Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF---~nkcNvGYAFIN 437 (549)
T KOG4660|consen 361 RTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDF---KNKCNVGYAFIN 437 (549)
T ss_pred hhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEecccc---ccccccceeEEe
Confidence 355667778777777776666542 3333444555444 345678999999
Q ss_pred eCCHHHHHHHHHHhCCCccCCCCCCCccEEEEeecCC
Q 031746 105 FENPACAATALSALQGYRMDEDDPDSKFLRLQFSRNP 141 (153)
Q Consensus 105 f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~V~~a~~~ 141 (153)
|.+.+.+....+++||+.+..-+ ..+..++.||+-.
T Consensus 438 m~sp~ai~~F~kAFnGk~W~~Fn-S~Kia~itYArIQ 473 (549)
T KOG4660|consen 438 MTSPEAIIRFYKAFNGKKWEKFN-SEKIASITYARIQ 473 (549)
T ss_pred ecCHHHHHHHHHHHcCCchhhhc-ceeeeeeehhhhh
Confidence 99999999999999999987655 4567888888643
No 131
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.73 E-value=0.0062 Score=48.30 Aligned_cols=81 Identities=19% Similarity=0.330 Sum_probs=58.4
Q ss_pred CeEEEcCCCCCCCHHHH-H--HhhcCCCCeEEEEEeecCC-ccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCC
Q 031746 54 STLYVEGLPADSTKREV-A--HIFRPFVGYKEVRLVIKES-KLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 129 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l-~--~~F~~~G~i~~~~~~~~~~-~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~ 129 (153)
.-+||-.|+..+..+.+ + +.|.+||.|..|.+..+.+ ....+-.. -++|.|...++|..||...+|..++++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~--- 153 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGR--- 153 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhh---
Confidence 45788888877665544 3 6799999999987766542 11112222 389999999999999999999999874
Q ss_pred CccEEEEeecC
Q 031746 130 SKFLRLQFSRN 140 (153)
Q Consensus 130 ~r~l~V~~a~~ 140 (153)
.|+.++...
T Consensus 154 --~lka~~gtt 162 (327)
T KOG2068|consen 154 --ALKASLGTT 162 (327)
T ss_pred --hhHHhhCCC
Confidence 466666543
No 132
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.72 E-value=0.0057 Score=46.82 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=46.3
Q ss_pred HHHhhc-CCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccEEEEeecC
Q 031746 70 VAHIFR-PFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSRN 140 (153)
Q Consensus 70 l~~~F~-~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~V~~a~~ 140 (153)
|...|+ +||.|.++.+..+- +-...|=++|.|...++|++|++.|||..+.++ +|..+++.-
T Consensus 85 ~f~E~~~kygEiee~~Vc~Nl----~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~-----pi~ae~~pv 147 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDNL----GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGR-----PIHAELSPV 147 (260)
T ss_pred HHHHHHHHhhhhhhhhhhccc----chhhhhhhhhhcccHHHHHHHHHHHcCccccCC-----cceeeecCc
Confidence 333344 89999988665432 222445699999999999999999999999774 688887653
No 133
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.42 E-value=0.013 Score=51.64 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=64.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccE
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 133 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l 133 (153)
.+.++.|.+-..+...|..+|.+||.+.+.+.+.+. -.+.|+|...+.|..|+++|+|+++.. .+-+-
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~---------N~alvs~~s~~sai~a~dAl~gkevs~---~g~Ps 366 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL---------NMALVSFSSVESAILALDALQGKEVSV---TGAPS 366 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecccc---------cchhhhhHHHHHHHHhhhhhcCCcccc---cCCce
Confidence 345666777788999999999999999988776554 179999999999999999999999876 44579
Q ss_pred EEEeecCCCC
Q 031746 134 RLQFSRNPGP 143 (153)
Q Consensus 134 ~V~~a~~~~~ 143 (153)
+|.+++.-+.
T Consensus 367 ~V~~ak~~~~ 376 (1007)
T KOG4574|consen 367 RVSFAKTLPM 376 (1007)
T ss_pred eEEecccccc
Confidence 9999986443
No 134
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.21 E-value=0.069 Score=45.26 Aligned_cols=64 Identities=14% Similarity=0.239 Sum_probs=53.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcC--CCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHH-------HHhCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRP--FVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL-------SALQGYRM 123 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~--~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~-------~~l~g~~l 123 (153)
.|.+.+..||..+..|+++.||.. +-++.+|.+..++ -=||.|++..+|..|. +.++|+.|
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~----------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND----------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC----------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 567788999999999999999985 6778888887654 3789999999999997 45678877
Q ss_pred CCC
Q 031746 124 DED 126 (153)
Q Consensus 124 ~~~ 126 (153)
+.+
T Consensus 245 mAR 247 (684)
T KOG2591|consen 245 MAR 247 (684)
T ss_pred hhh
Confidence 774
No 135
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.08 E-value=0.079 Score=41.67 Aligned_cols=63 Identities=19% Similarity=0.219 Sum_probs=47.0
Q ss_pred HHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccEEEEe
Q 031746 68 REVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQF 137 (153)
Q Consensus 68 ~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~V~~ 137 (153)
+++++-.++||.|..|.|....+.-. .. -.--||+|...++|.+|+-.|||.-+.|+ .++..|
T Consensus 301 de~keEceKyg~V~~viifeip~~p~-de-avRiFveF~r~e~aiKA~VdlnGRyFGGr-----~v~A~F 363 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPE-DE-AVRIFVEFERVESAIKAVVDLNGRYFGGR-----VVSACF 363 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCcc-ch-hheeeeeeccHHHHHHHHHhcCCceecce-----eeehee
Confidence 36778889999999887776542111 11 12489999999999999999999999874 555554
No 136
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.68 E-value=0.079 Score=45.60 Aligned_cols=63 Identities=13% Similarity=0.087 Sum_probs=54.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 127 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~ 127 (153)
..++||+|+-..+..+-++.++..+|-|..+... + |+|.+|........|+..|+-..+.+.+
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~--~----------fgf~~f~~~~~~~ra~r~~t~~~~~~~k 102 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD--K----------FGFCEFLKHIGDLRASRLLTELNIDDQK 102 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhh--h----------hcccchhhHHHHHHHHHHhcccCCCcch
Confidence 5799999999999999999999999987655332 2 8999999999999999999988887753
No 137
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.26 E-value=0.094 Score=38.67 Aligned_cols=61 Identities=21% Similarity=0.249 Sum_probs=43.7
Q ss_pred CHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhC--CCccCCCCCCCccEEEEeecC
Q 031746 66 TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ--GYRMDEDDPDSKFLRLQFSRN 140 (153)
Q Consensus 66 te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~--g~~l~~~~~~~r~l~V~~a~~ 140 (153)
..+.|+++|..|+.+..+.++..-. =..|.|.+.+.|..|...|+ +..+.+. .|+|-|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr---------Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~-----~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR---------RIRVVFESPESAQRARQLLHWDGTSFNGK-----RLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT---------EEEEE-SSTTHHHHHHHTST--TSEETTE-----E-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC---------EEEEEeCCHHHHHHHHHHhcccccccCCC-----ceEEEEccc
Confidence 3478999999999998887765431 48899999999999999999 8998875 589988853
No 138
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.96 E-value=0.21 Score=35.39 Aligned_cols=71 Identities=21% Similarity=0.239 Sum_probs=50.6
Q ss_pred CCeEEEcCCCCCCCH----HHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031746 53 SSTLYVEGLPADSTK----REVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 128 (153)
Q Consensus 53 ~~~L~V~nLp~~~te----~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~ 128 (153)
..+|.|.=|..++.. ..+...++.||+|.+|.+.-.. -|.|.|.|..+|=+|+.+++.... +
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq----------savVvF~d~~SAC~Av~Af~s~~p-g--- 151 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ----------SAVVVFKDITSACKAVSAFQSRAP-G--- 151 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc----------eEEEEehhhHHHHHHHHhhcCCCC-C---
Confidence 578888765554332 3455667789999998765322 599999999999999999987443 3
Q ss_pred CCccEEEEeec
Q 031746 129 DSKFLRLQFSR 139 (153)
Q Consensus 129 ~~r~l~V~~a~ 139 (153)
..+..+|..
T Consensus 152 --tm~qCsWqq 160 (166)
T PF15023_consen 152 --TMFQCSWQQ 160 (166)
T ss_pred --ceEEeeccc
Confidence 247777654
No 139
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.83 E-value=0.49 Score=28.96 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=40.1
Q ss_pred CCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 031746 64 DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 125 (153)
Q Consensus 64 ~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~ 125 (153)
.++-++++..+..|+- . +|..++ +| -||.|.+..+|++|....+|..+..
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~----tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDR----TG-----FYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecC----CE-----EEEEECChHHHHHHHHhcCCCEEEE
Confidence 5788999999999974 3 234443 32 6899999999999999999998865
No 140
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=91.96 E-value=0.098 Score=41.17 Aligned_cols=70 Identities=19% Similarity=0.023 Sum_probs=56.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 125 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~ 125 (153)
.+++|++++.+.+.+.+...++..+|......+.... ....++|++++.|...+.+..|+.....+.+..
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~---~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~ 157 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLE---DSLSSKGGLSVHFAGKSQFFAALEESGSKVLDG 157 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhc---cccccccceeeccccHHHHHHHHHhhhcccccc
Confidence 5789999999999999999999999987776655433 356788999999999999999995444445544
No 141
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.70 E-value=1 Score=27.90 Aligned_cols=59 Identities=19% Similarity=0.310 Sum_probs=35.0
Q ss_pred CCCCHHHHHHhhcCCCCeE-----EEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccEEEEe
Q 031746 63 ADSTKREVAHIFRPFVGYK-----EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQF 137 (153)
Q Consensus 63 ~~~te~~l~~~F~~~G~i~-----~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~V~~ 137 (153)
..++..+|..++...+.|. .|++... |+||+-.. +.|+.++..|++..+.++ .++|+.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-----------~S~vev~~-~~a~~v~~~l~~~~~~gk-----~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-----------FSFVEVPE-EVAEKVLEALNGKKIKGK-----KVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS------------EEEEE-T-T-HHHHHHHHTT--SSS---------EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee-----------EEEEEECH-HHHHHHHHHhcCCCCCCe-----eEEEEE
Confidence 4688888988888776553 4555422 89999875 578899999999999885 588876
Q ss_pred e
Q 031746 138 S 138 (153)
Q Consensus 138 a 138 (153)
|
T Consensus 74 A 74 (74)
T PF03880_consen 74 A 74 (74)
T ss_dssp -
T ss_pred C
Confidence 4
No 142
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.49 E-value=0.89 Score=37.82 Aligned_cols=71 Identities=20% Similarity=0.331 Sum_probs=59.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCC-CCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPF-VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 128 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~-G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~ 128 (153)
+..|+|--+|-.++..||-.|...+ -.|.+++++.+. --++-..+|.|.+.++|..=.+.+||..+..-.+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~-----~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~ 145 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG-----MPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEP 145 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC-----CCceEEEEEEeccchhHHHHHHHcCCCcCCCCCc
Confidence 6889999999999999999998754 456788888754 2244579999999999999999999999876543
No 143
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.06 E-value=0.14 Score=42.57 Aligned_cols=73 Identities=22% Similarity=0.300 Sum_probs=57.1
Q ss_pred CCeEEEcCCCCCC-CHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 53 SSTLYVEGLPADS-TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 53 ~~~L~V~nLp~~~-te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
.+.|-+-..|+.+ +.++|..+|.+||.|..|.+-... . -|.|.|.+..+|-.|. ..++..|.+ |
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~-~--------~a~vTF~t~aeag~a~-~s~~avlnn-----r 436 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS-L--------HAVVTFKTRAEAGEAY-ASHGAVLNN-----R 436 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCch-h--------hheeeeeccccccchh-ccccceecC-----c
Confidence 3556666677764 456899999999999998775431 1 4899999999997776 788999987 4
Q ss_pred cEEEEeecC
Q 031746 132 FLRLQFSRN 140 (153)
Q Consensus 132 ~l~V~~a~~ 140 (153)
.|||-|-.+
T Consensus 437 ~iKl~whnp 445 (526)
T KOG2135|consen 437 FIKLFWHNP 445 (526)
T ss_pred eeEEEEecC
Confidence 799999775
No 144
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=90.93 E-value=0.04 Score=44.83 Aligned_cols=65 Identities=17% Similarity=0.107 Sum_probs=51.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
++++|++|+..+-..++.++|..+|.+...++.... ..-+|-++|........|+ ..+|..+.-+
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~-------~s~~c~~sf~~qts~~hal-r~~gre~k~q 216 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASKS-------RSSSCSHSFRKQTSSKHAL-RSHGRERKRQ 216 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccC-------CCcchhhhHhhhhhHHHHH-Hhcchhhhhh
Confidence 679999999999999999999999998766554322 2337889999888888887 5777776554
No 145
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.81 E-value=0.76 Score=36.37 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=43.9
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 56 LYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 56 L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
|-|-..|+.-. .-|-.+|++||.|++.... . .|+ +-+|.|.+.-+|.+|| ..||+.|.+.
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~----ngN---wMhirYssr~~A~KAL-skng~ii~g~ 259 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--S----NGN---WMHIRYSSRTHAQKAL-SKNGTIIDGD 259 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecC--C----CCc---eEEEEecchhHHHHhh-hhcCeeeccc
Confidence 34445555543 3456789999999875432 2 132 9999999999999999 6899998874
No 146
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.81 E-value=3 Score=35.85 Aligned_cols=76 Identities=14% Similarity=0.236 Sum_probs=58.2
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHhhcCC----CCeEEEEEeecC-C------ccCCCC----------------------
Q 031746 51 DASSTLYVEGLPAD-STKREVAHIFRPF----VGYKEVRLVIKE-S------KLRGGD---------------------- 96 (153)
Q Consensus 51 ~~~~~L~V~nLp~~-~te~~l~~~F~~~----G~i~~~~~~~~~-~------~~~~g~---------------------- 96 (153)
..+++|-|.||.|+ +..++|.-+|..| |.|.+|.|.... . .+..|.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 34688999999986 8889999999876 688888876532 0 000111
Q ss_pred ---------------cceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 97 ---------------PLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 97 ---------------~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
---||.|+|.+...|.+....++|..+...
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 134899999999999999999999999763
No 147
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=85.68 E-value=1.7 Score=34.24 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=35.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHH
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPA 109 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~ 109 (153)
.-+|++||+.++.-.||+.-+.+-+..- +++.+.- +.|-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg-------~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWKG-------HFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCc-eeEeeec-------CCcceeEecCCcc
Confidence 4599999999999999999998877542 3444332 2346999998743
No 148
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=85.03 E-value=0.032 Score=45.85 Aligned_cols=76 Identities=12% Similarity=0.250 Sum_probs=62.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
++.+-|-|+|+...++-|..|+.+||.+..|..+...+... ..-|.|...+.+..|+..|||..+... .
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta------vvnvty~~~~~~~~ai~kl~g~Q~en~-----~ 148 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA------VVNVTYSAQQQHRQAIHKLNGPQLENQ-----H 148 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH------HHHHHHHHHHHHHHHHHhhcchHhhhh-----h
Confidence 56789999999999999999999999999887655432211 345889999999999999999999875 4
Q ss_pred EEEEeec
Q 031746 133 LRLQFSR 139 (153)
Q Consensus 133 l~V~~a~ 139 (153)
++|.|-.
T Consensus 149 ~k~~YiP 155 (584)
T KOG2193|consen 149 LKVGYIP 155 (584)
T ss_pred hhcccCc
Confidence 8888754
No 149
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.92 E-value=5 Score=33.17 Aligned_cols=55 Identities=16% Similarity=0.255 Sum_probs=43.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCe-EEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHH
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGY-KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSA 117 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i-~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~ 117 (153)
...|-|.+.|.....+||-..|+.|+.- -+|.++.+. .+|..|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt----------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT----------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc----------eeEEeecchHHHHHHhhc
Confidence 3679999999999999999999999753 234444343 699999999999999853
No 150
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=82.31 E-value=0.59 Score=35.47 Aligned_cols=69 Identities=20% Similarity=0.245 Sum_probs=58.3
Q ss_pred CeEEEcC----CCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 54 STLYVEG----LPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 54 ~~L~V~n----Lp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
.+++.|+ |...++++.+.+.|++.+.+..+++-.+. .|.++-++|+.+......-.++..+++..+.-.
T Consensus 81 ~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~----d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~ 153 (267)
T KOG4454|consen 81 RTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN----DGRNRNFGFVTYQRLCAVPFALDLYQGLELFQK 153 (267)
T ss_pred cccccCCCcchhhhhcchhhheeeecccCCCCCccccccc----cCCccCccchhhhhhhcCcHHhhhhcccCcCCC
Confidence 5678888 77889999999999999999999887664 366777999999999999999998888877653
No 151
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=75.29 E-value=2.6 Score=33.21 Aligned_cols=71 Identities=23% Similarity=0.343 Sum_probs=45.3
Q ss_pred CeEEEcCCCC------------CCCHHHHHHhhcCCCCeEEEEEeecCCc--cCCCC-----cceEEE---------EEe
Q 031746 54 STLYVEGLPA------------DSTKREVAHIFRPFVGYKEVRLVIKESK--LRGGD-----PLILCF---------VDF 105 (153)
Q Consensus 54 ~~L~V~nLp~------------~~te~~l~~~F~~~G~i~~~~~~~~~~~--~~~g~-----~kg~~f---------V~f 105 (153)
.|+|+..||- --+++-|+..|+.||.|..|.|....+- .-+|+ .+||+| |.|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 5677777772 1456779999999999999887655410 01222 344443 444
Q ss_pred CCHHHHHHHHHHhCCCccC
Q 031746 106 ENPACAATALSALQGYRMD 124 (153)
Q Consensus 106 ~~~~~a~~A~~~l~g~~l~ 124 (153)
-.......|+..|.|.++.
T Consensus 230 meykgfa~amdalr~~k~a 248 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKLA 248 (445)
T ss_pred HHHHhHHHHHHHHhcchHH
Confidence 4455566778888887763
No 152
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=71.33 E-value=11 Score=22.77 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=17.3
Q ss_pred HHHHHhhcCCCCeEEEEEeecC
Q 031746 68 REVAHIFRPFVGYKEVRLVIKE 89 (153)
Q Consensus 68 ~~l~~~F~~~G~i~~~~~~~~~ 89 (153)
.+|+++|++.|.|.-+.+-...
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~e 30 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYE 30 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcccc
Confidence 5799999999999877665443
No 153
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=68.09 E-value=9.1 Score=28.03 Aligned_cols=61 Identities=26% Similarity=0.304 Sum_probs=40.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHH
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 115 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~ 115 (153)
....+++.+++..++..++..+|..+|.+....+.... .......+.++.+.....+..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 224 KSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK---DGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred ccceeeccccccccchhHHHHhccccccceeeeccCCC---CCcccccccccchhHHHhhhhhh
Confidence 36789999999999999999999999999766655443 22223334444444444444333
No 154
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=64.83 E-value=5.8 Score=29.23 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=49.6
Q ss_pred CeEEEcCCCCCCCHH-----HHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031746 54 STLYVEGLPADSTKR-----EVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 128 (153)
Q Consensus 54 ~~L~V~nLp~~~te~-----~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~ 128 (153)
.++++.+++.++..+ ....+|.+|-.....+++... ++.-|.|.+.+.|..|...++++.+.+++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf---------rrvRi~f~~p~~a~~a~i~~~~~~f~~~~- 80 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF---------RRVRINFSNPEAAADARIKLHSTSFNGKN- 80 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh---------ceeEEeccChhHHHHHHHHhhhcccCCCc-
Confidence 457888888654332 344666666554443443322 36779999999999999999999998863
Q ss_pred CCccEEEEeec
Q 031746 129 DSKFLRLQFSR 139 (153)
Q Consensus 129 ~~r~l~V~~a~ 139 (153)
.++.-++.
T Consensus 81 ---~~k~yfaQ 88 (193)
T KOG4019|consen 81 ---ELKLYFAQ 88 (193)
T ss_pred ---eEEEEEcc
Confidence 36665554
No 155
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=60.24 E-value=1.2 Score=38.03 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=53.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
.|.||+.|+++.++-.+|..++..+-.+..+-+.... .-.+..-+..|.|.---....|+.+||+..+...
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~---aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTIN---AEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCch---HHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 4779999999999999999999998776665443332 1122334688899887788888889999988653
No 156
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=56.50 E-value=7.4 Score=29.86 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=26.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEE
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKE 82 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~ 82 (153)
..+||+-|+|...|++.|.++.++.|-+..
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 578999999999999999999999985543
No 157
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=56.28 E-value=8.1 Score=25.00 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhh
Q 031746 53 SSTLYVEGLPADSTKREVAHIF 74 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F 74 (153)
.++|-|+|||..+.+++|++.+
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeE
Confidence 4789999999999999999654
No 158
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=56.08 E-value=11 Score=25.61 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=25.7
Q ss_pred eEEEcCCCCC---------CCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHH
Q 031746 55 TLYVEGLPAD---------STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPA 109 (153)
Q Consensus 55 ~L~V~nLp~~---------~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~ 109 (153)
++.|-|++-. .+.++|.+.|..|..+. ++.+.... -..|++.|+|...-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~-----gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ-----GHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT-----EEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC-----CCcEEEEEEECCCh
Confidence 4556666543 45678999999998875 55555542 24579999998743
No 159
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=55.68 E-value=18 Score=28.18 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=25.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEe
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 86 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~ 86 (153)
....|+|||+.++..-|..+++..-.+....++
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 457799999999999999999886554333333
No 160
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=52.89 E-value=9 Score=20.50 Aligned_cols=17 Identities=12% Similarity=0.362 Sum_probs=10.5
Q ss_pred CCCCHHHHHHhhcCCCC
Q 031746 63 ADSTKREVAHIFRPFVG 79 (153)
Q Consensus 63 ~~~te~~l~~~F~~~G~ 79 (153)
.++++++|+++|.+...
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 47899999999988653
No 161
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.88 E-value=3.3 Score=34.59 Aligned_cols=76 Identities=11% Similarity=-0.117 Sum_probs=54.9
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccEE
Q 031746 55 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 134 (153)
Q Consensus 55 ~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~ 134 (153)
..|+..||-..+++++.-+|..||-|..+..-... .+|..+..+||.-.. ..+..++..+--..+.+. .++
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~---~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~-----~~r 75 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYV---NGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFES-----QDR 75 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccc---cCCcceeeeeeeeec-cCcccccCHHHHhhhhhh-----hhh
Confidence 45677889999999999999999988877665544 456677788888764 456677766655555553 367
Q ss_pred EEeec
Q 031746 135 LQFSR 139 (153)
Q Consensus 135 V~~a~ 139 (153)
|.+++
T Consensus 76 ~~~~~ 80 (572)
T KOG4365|consen 76 KAVSP 80 (572)
T ss_pred hhcCc
Confidence 66664
No 162
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=52.21 E-value=3.1 Score=33.60 Aligned_cols=48 Identities=10% Similarity=-0.041 Sum_probs=35.8
Q ss_pred HHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 031746 67 KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 121 (153)
Q Consensus 67 e~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~ 121 (153)
...+.+++.+.|.+..-.+..- -+.|.+||..-..++++++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rt-------FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRT-------FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHH-------hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 3567777778887665433322 23568999999999999999999876
No 163
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=51.97 E-value=21 Score=29.30 Aligned_cols=73 Identities=18% Similarity=0.311 Sum_probs=47.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEE-EEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEV-RLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 127 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~-~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~ 127 (153)
+.+.|-+||+..++++|.+-...+-.-+.. .+.......... .-+.+||.|...++...=...++|+.+.+.+
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~-~ysrayinFk~~~dv~ef~~~f~g~ifld~K 81 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNH-KYSRAYINFKNPEDVEEFRRRFDGYIFLDNK 81 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhh-hhhhhhhccccHHHHHHHHhhCCceEEecCC
Confidence 567889999999999887766654332222 111111000111 2457999999999987777889998887653
No 164
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=47.39 E-value=40 Score=26.79 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=44.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCc----cCCCCcceEEEEEeCCHHHHH
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESK----LRGGDPLILCFVDFENPACAA 112 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~----~~~g~~kg~~fV~f~~~~~a~ 112 (153)
.+.|-+.|+..+++-..+...|.+||.|.+|.++.+..+ ....+......+.|-+.+.+.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CL 78 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICL 78 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHH
Confidence 356888999999999999999999999999999876410 011223346889998877643
No 165
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=38.33 E-value=38 Score=26.19 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhcC
Q 031746 55 TLYVEGLPADSTKREVAHIFRP 76 (153)
Q Consensus 55 ~L~V~nLp~~~te~~l~~~F~~ 76 (153)
.+.|+|+|+.++.+-|..++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5789999999999999988864
No 166
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=36.28 E-value=41 Score=26.56 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=19.6
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCC
Q 031746 55 TLYVEGLPADSTKREVAHIFRPF 77 (153)
Q Consensus 55 ~L~V~nLp~~~te~~l~~~F~~~ 77 (153)
-+.|+|||+.++...|.++++..
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~ 125 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHR 125 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcC
Confidence 47789999999999999998653
No 167
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=36.24 E-value=86 Score=19.96 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=29.2
Q ss_pred CeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccEEEEeec
Q 031746 79 GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSR 139 (153)
Q Consensus 79 ~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~V~~a~ 139 (153)
.|.++++..-. ..|+.++||=|.|++ ++ .+++.++-..+ .-|.|++..
T Consensus 2 ~itdVri~~~~---~~~~lka~asV~~dd------~f-~I~~ikVieg~---~GlFVaMPs 49 (84)
T PF04026_consen 2 KITDVRIRKIE---PEGKLKAFASVTFDD------CF-VIHDIKVIEGE---KGLFVAMPS 49 (84)
T ss_dssp -EEEEEEEETT---SSSSEEEEEEEEETT------TE-EEEEEEEEEET---TEEEEE--E
T ss_pred ccEEEEEEEec---CCCCEEEEEEEEECC------EE-EEEeEEEEECC---CCcEEECCC
Confidence 46778777665 348899999999987 22 45655554321 236666544
No 168
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=36.12 E-value=77 Score=20.77 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=31.0
Q ss_pred CeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccEEEEeec
Q 031746 79 GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSR 139 (153)
Q Consensus 79 ~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~V~~a~ 139 (153)
.|.+|++..-. ..|+.++||-|.|++.- ..++.++-..+ .-|.|.+.+
T Consensus 2 ~ITdVri~~~~---~~g~lka~asit~dd~f-------vI~~ikVieg~---~GlFVaMPs 49 (94)
T PRK13259 2 EVTDVRLRKVN---TEGRMKAIVSITFDNEF-------VVHDIRVIEGN---NGLFIAMPS 49 (94)
T ss_pred eEEEEEEEEeC---CCCcEEEEEEEEECCEE-------EEeeeEEEECC---CCeEEECcC
Confidence 46777777654 45889999999998732 45555544331 237777554
No 169
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=35.56 E-value=83 Score=20.19 Aligned_cols=48 Identities=13% Similarity=0.069 Sum_probs=29.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCC
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFEN 107 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~ 107 (153)
.-+||||++..+-|.-...+.+..+.-.-+-+..+. ...||.|-.+.+
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~------neqG~~~~t~G~ 73 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN------NEQGFDFRTLGD 73 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC------CCCCEEEEEeCC
Confidence 459999999998887666666644433322232222 145699988743
No 170
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=35.51 E-value=1.3e+02 Score=20.09 Aligned_cols=41 Identities=10% Similarity=0.325 Sum_probs=26.0
Q ss_pred HHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHH
Q 031746 69 EVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 115 (153)
Q Consensus 69 ~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~ 115 (153)
+|..++++.| |.+-.|..+.. .+--|+++++.|.+..-+++
T Consensus 28 E~~a~lk~ag-i~nYSIfLde~-----~n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 28 ELLALLKEAG-IRNYSIFLDEE-----ENLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHHcC-CceeEEEecCC-----cccEEEEEEEcChHHHHHHH
Confidence 5667778877 56555655542 23459999999655544443
No 171
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=34.99 E-value=61 Score=29.12 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=30.5
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccEEEEeecCC
Q 031746 96 DPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSRNP 141 (153)
Q Consensus 96 ~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~V~~a~~~ 141 (153)
+..+.|||+|.+...|..|.+..+...... ..+++|..|
T Consensus 303 ~~~~~aFVtf~sr~~A~~~aq~~~~~~~~~-------w~~~~APeP 341 (728)
T KOG1134|consen 303 KPLPAAFVTFKSRYGAAVAAQTQQSLNPTK-------WLTEFAPEP 341 (728)
T ss_pred CCCceEEEEEEeeHHHHHHHHhhhcCCCCc-------eEEEecCCc
Confidence 445699999999999999998766555543 788888765
No 172
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=34.65 E-value=39 Score=26.52 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=18.4
Q ss_pred EEEEeCCHHHHHHHHHHhCCCc
Q 031746 101 CFVDFENPACAATALSALQGYR 122 (153)
Q Consensus 101 ~fV~f~~~~~a~~A~~~l~g~~ 122 (153)
|||.|.+..+|..|++.+...+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~ 22 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR 22 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC
Confidence 7999999999999998655543
No 173
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=34.22 E-value=53 Score=24.93 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=20.6
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCC
Q 031746 55 TLYVEGLPADSTKREVAHIFRPFV 78 (153)
Q Consensus 55 ~L~V~nLp~~~te~~l~~~F~~~G 78 (153)
-+.|+|||+.++.+.|..++..++
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~ 119 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPK 119 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCC
Confidence 478999999999999999997544
No 174
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=33.94 E-value=1.4e+02 Score=19.82 Aligned_cols=50 Identities=12% Similarity=0.282 Sum_probs=35.3
Q ss_pred HHHHhhcCCCCeEEEEEeecCC------------ccCCCCcceEEEEEeCCHHHHHHHHHHh
Q 031746 69 EVAHIFRPFVGYKEVRLVIKES------------KLRGGDPLILCFVDFENPACAATALSAL 118 (153)
Q Consensus 69 ~l~~~F~~~G~i~~~~~~~~~~------------~~~~g~~kg~~fV~f~~~~~a~~A~~~l 118 (153)
....+|..||.+..+..+-+.- +...+..-.|.+|+|.+.+..+++...+
T Consensus 24 ~a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~ 85 (103)
T PF07237_consen 24 KAAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKM 85 (103)
T ss_dssp HHHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 3457899999988877766541 1123556679999999999999888654
No 175
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=33.88 E-value=66 Score=21.18 Aligned_cols=49 Identities=10% Similarity=0.027 Sum_probs=27.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCH
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENP 108 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~ 108 (153)
.-+|||++...+.+.--..+-+.++.-. +.++... .. ..||.|-.+.+.
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~G~-avmv~~~----~~-eqG~~~~t~G~~ 76 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEEGN-VVMAWAT----NT-ESGFEFQTFGEN 76 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCCc-EEEEEcC----CC-CCCcEEEecCCC
Confidence 4599999988877764444444443322 2223221 11 226999888764
No 176
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=33.35 E-value=62 Score=22.79 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=19.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcC
Q 031746 54 STLYVEGLPADSTKREVAHIFRP 76 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~ 76 (153)
.-+.|+|+|+.++.+.|..++..
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~ 100 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEE 100 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhc
Confidence 34778999999999999998875
No 177
>PRK02302 hypothetical protein; Provisional
Probab=32.14 E-value=1.4e+02 Score=19.28 Aligned_cols=39 Identities=10% Similarity=0.018 Sum_probs=28.4
Q ss_pred hhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Q 031746 73 IFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM 123 (153)
Q Consensus 73 ~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l 123 (153)
-+.+||.|..+.- + . -|+ |-|.+.++++..++.|....+
T Consensus 22 ~LrkfG~I~Y~Sk---k---~-----kYv-vlYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 22 KLSKYGDIVYHSK---R---S-----RYL-VLYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred HHhhcCcEEEEec---c---c-----cEE-EEEECHHHHHHHHHHHhcCCC
Confidence 3568998875421 1 0 166 789999999999999987776
No 178
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=31.41 E-value=2.5e+02 Score=24.69 Aligned_cols=68 Identities=7% Similarity=0.107 Sum_probs=48.0
Q ss_pred CeEEEcCC--CCCCCHHHHHHhhcCCCCeE-----EEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 54 STLYVEGL--PADSTKREVAHIFRPFVGYK-----EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 54 ~~L~V~nL--p~~~te~~l~~~F~~~G~i~-----~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
.++|| |+ -..++..+|-.++..-+.|. .|+|. ++ |.||+... ..+...++.|++..+.++
T Consensus 487 ~~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~-~~----------~s~v~~~~-~~~~~~~~~~~~~~~~~~ 553 (629)
T PRK11634 487 QLYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF-AS----------HSTIELPK-GMPGEVLQHFTRTRILNK 553 (629)
T ss_pred EEEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe-CC----------ceEEEcCh-hhHHHHHHHhccccccCC
Confidence 34555 33 34688888888887665553 34443 22 89999874 567888999999999885
Q ss_pred CCCCccEEEEeec
Q 031746 127 DPDSKFLRLQFSR 139 (153)
Q Consensus 127 ~~~~r~l~V~~a~ 139 (153)
.|.|+.+.
T Consensus 554 -----~~~~~~~~ 561 (629)
T PRK11634 554 -----PMNMQLLG 561 (629)
T ss_pred -----ceEEEECC
Confidence 58888865
No 179
>PHA01632 hypothetical protein
Probab=31.13 E-value=50 Score=19.48 Aligned_cols=20 Identities=20% Similarity=0.483 Sum_probs=16.3
Q ss_pred EEcCCCCCCCHHHHHHhhcC
Q 031746 57 YVEGLPADSTKREVAHIFRP 76 (153)
Q Consensus 57 ~V~nLp~~~te~~l~~~F~~ 76 (153)
.|..+|..-||++|+.++.+
T Consensus 20 lieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 20 LIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred ehhhcCCCCCHHHHHHHHHH
Confidence 45789999999999987653
No 180
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=31.01 E-value=31 Score=26.48 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFR 75 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~ 75 (153)
...++|+|||+.++..-|..++.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHH
T ss_pred CceEEEEEecccchHHHHHHHhh
Confidence 45689999999999999999987
No 181
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=30.72 E-value=75 Score=19.96 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=21.0
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCCc
Q 031746 97 PLILCFVDFENPACAATALSALQGYR 122 (153)
Q Consensus 97 ~kg~~fV~f~~~~~a~~A~~~l~g~~ 122 (153)
.+||-|||=.+..+...|++.+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 57899999999999999987666544
No 182
>PRK02886 hypothetical protein; Provisional
Probab=30.46 E-value=1.5e+02 Score=19.08 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=28.3
Q ss_pred hhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Q 031746 73 IFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM 123 (153)
Q Consensus 73 ~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l 123 (153)
-+.+||.|..+.--. -|+ |-|.+.++++..++.|....+
T Consensus 20 ~LrkyG~I~Y~Skr~-----------kYv-vlYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 20 QLRKFGNVHYVSKRL-----------KYA-VLYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred HHhhcCcEEEEeccc-----------cEE-EEEECHHHHHHHHHHHhcCCC
Confidence 356899987542110 166 789999999999999987766
No 183
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=30.08 E-value=1.4e+02 Score=18.44 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=28.3
Q ss_pred hhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Q 031746 73 IFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM 123 (153)
Q Consensus 73 ~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l 123 (153)
-+.+||.|..+.- + . -|+ |-|.+.++++..++.|....+
T Consensus 16 ~L~kfG~i~Y~Sk---k---~-----kYv-vlYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 16 QLRKFGDIHYVSK---K---M-----KYV-VLYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred hHhhcccEEEEEC---C---c-----cEE-EEEECHHHHHHHHHHHhcCCC
Confidence 4568998775421 1 0 166 778999999999999987766
No 184
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=25.48 E-value=51 Score=19.12 Aligned_cols=37 Identities=14% Similarity=0.057 Sum_probs=18.0
Q ss_pred cceEEEEEeCC-HHHHHHHHHHhCCCccCCCCCCCccEEEEeec
Q 031746 97 PLILCFVDFEN-PACAATALSALQGYRMDEDDPDSKFLRLQFSR 139 (153)
Q Consensus 97 ~kg~~fV~f~~-~~~a~~A~~~l~g~~l~~~~~~~r~l~V~~a~ 139 (153)
++|||||..++ ..+.--.-..|++..-.+ .+.|....
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD------~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGD------KVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-------EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCC------EEEEEEec
Confidence 45799999997 222222224555544433 35665555
No 185
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=24.83 E-value=1.1e+02 Score=18.46 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=21.6
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCccC
Q 031746 100 LCFVDFENPACAATALSALQGYRMD 124 (153)
Q Consensus 100 ~~fV~f~~~~~a~~A~~~l~g~~l~ 124 (153)
+.+|.|.+..+|.+|-+.|....+.
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCc
Confidence 6899999999999999988876653
No 186
>PHA03008 hypothetical protein; Provisional
Probab=22.61 E-value=1e+02 Score=23.21 Aligned_cols=37 Identities=11% Similarity=0.272 Sum_probs=31.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKE 89 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~ 89 (153)
+..+||+|+..--...-++-+|..|..+.++-++...
T Consensus 21 ~d~~~~snit~~h~~n~i~~ff~~~d~~~~~ifvpg~ 57 (234)
T PHA03008 21 CDIAFISNITHIHDHNIIKIFFDKFDDFDEIIFVPGD 57 (234)
T ss_pred ccEEEEecccccccccHHHHHHhhccccceEEEccCC
Confidence 5679999999999999999999999999888776543
No 187
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=22.34 E-value=84 Score=24.78 Aligned_cols=40 Identities=13% Similarity=0.234 Sum_probs=28.6
Q ss_pred CCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 031746 64 DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG 120 (153)
Q Consensus 64 ~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g 120 (153)
.+|+++|+.+|..+..- ++ ...|.+.+...|..+++.+..
T Consensus 128 ~Vtd~ei~~~y~~~~~~--~~---------------v~hIlv~~~~~A~~v~~~l~~ 167 (298)
T PRK04405 128 KVTNSQLKKAWKSYQPK--VT---------------VQHILVSKKSTAETVIKKLKD 167 (298)
T ss_pred CCCHHHHHHHHHHhhhh--EE---------------EEEEEecChHHHHHHHHHHHC
Confidence 58999999999876431 11 355667778888888877643
No 188
>PF15063 TC1: Thyroid cancer protein 1
Probab=22.24 E-value=57 Score=20.50 Aligned_cols=28 Identities=7% Similarity=0.026 Sum_probs=23.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCe
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGY 80 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i 80 (153)
.++--+.|+=.+++.+.|+.||..-|..
T Consensus 25 ~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 25 SRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred HhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 4556678888999999999999998864
No 189
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=22.13 E-value=1.2e+02 Score=27.69 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=28.1
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccEEEEeecCC
Q 031746 99 ILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSRNP 141 (153)
Q Consensus 99 g~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~V~~a~~~ 141 (153)
..|||+|++...|+.|.+..-.....+. ++|+.+..|
T Consensus 358 ~~~FItFkSq~~Aq~~aQ~~~~sr~~~~------~~v~iapaP 394 (827)
T COG5594 358 KSGFITFKSQASAQIAAQSQIYSRVLGK------LKVEIAPAP 394 (827)
T ss_pred ccEEEEEehhHHHHHHHHhhhhhhhhcc------eeeeecCCc
Confidence 4799999999999999877655555542 677777654
No 190
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=22.08 E-value=1.4e+02 Score=18.11 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=20.3
Q ss_pred CCCHHHHHHhhcCCCCeEEEEEeecC
Q 031746 64 DSTKREVAHIFRPFVGYKEVRLVIKE 89 (153)
Q Consensus 64 ~~te~~l~~~F~~~G~i~~~~~~~~~ 89 (153)
..-+.+|.++|-.--.|.++.+...+
T Consensus 29 ~~~e~eler~fl~~P~v~e~~l~EKK 54 (64)
T PF13046_consen 29 RLVEVELERHFLPLPEVKEVALYEKK 54 (64)
T ss_pred HHHHHHhhhhccCCCCceEEEEEEEE
Confidence 34456788899888899999888765
No 191
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=22.03 E-value=1.8e+02 Score=18.81 Aligned_cols=59 Identities=15% Similarity=0.083 Sum_probs=31.6
Q ss_pred eEEEcCCCCCCCHHHHHHhhc-------CC-CCeEEEEEeecCC---ccCCCCcce-EEEEEeCCHHHHHHHHH
Q 031746 55 TLYVEGLPADSTKREVAHIFR-------PF-VGYKEVRLVIKES---KLRGGDPLI-LCFVDFENPACAATALS 116 (153)
Q Consensus 55 ~L~V~nLp~~~te~~l~~~F~-------~~-G~i~~~~~~~~~~---~~~~g~~kg-~~fV~f~~~~~a~~A~~ 116 (153)
++|| |.++++++++..+.+ .. |.|..+.-+-.+. . -.+..+| |.++.|.-..++-+.++
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~-I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYK-INKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEE-cCCCCEEEEEEEEEEECHHHHHHHH
Confidence 4555 456777777665544 44 4555554332210 0 0122333 78888987666666664
No 192
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=21.78 E-value=1.2e+02 Score=16.68 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=22.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeE
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYK 81 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~ 81 (153)
..+|+.+.....+.++|.+++..+|.-.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v 29 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKV 29 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEE
Confidence 3567776665888999999999999844
No 193
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.39 E-value=1.3e+02 Score=22.24 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=31.4
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccCCCCCCCccEEEEeecCCCCCCCC
Q 031746 101 CFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSRNPGPRSVF 147 (153)
Q Consensus 101 ~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~V~~a~~~~~r~~~ 147 (153)
-..+|.|.++.+..++.|-+..-. ++.|.+++.|++|-.+
T Consensus 121 Rm~~Fsdv~e~e~~Le~La~R~~g-------plvv~l~RepGkREsR 160 (215)
T COG3132 121 RMYEFSDVAEVEHTLERLANREDG-------PLVVRLAREPGKRESR 160 (215)
T ss_pred hhhccchHHHHHHHHHHHhcCCCC-------ceeeecCCCCCcchhh
Confidence 456888889999899888877643 5999999988887653
No 194
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.80 E-value=3.3e+02 Score=19.82 Aligned_cols=47 Identities=13% Similarity=-0.072 Sum_probs=38.7
Q ss_pred CCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 031746 60 GLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 119 (153)
Q Consensus 60 nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~ 119 (153)
+|+..+.++-|.++-+-+|-|.+. .+. .-.+.|.+.+...+|++.+.
T Consensus 118 ~l~~~i~~erl~ei~E~~gvI~Ef---ee~----------~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 118 KLKKPIQEERLQEISEWHGVIFEF---EED----------DKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred ecCccchHHHHHHHHHHhceeEEe---cCC----------cEEEEeccHHHHHHHHHHHH
Confidence 899999999999999999977654 222 35789999999999998763
No 195
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=20.48 E-value=1.1e+02 Score=21.61 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=20.0
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCC
Q 031746 97 PLILCFVDFENPACAATALSALQG 120 (153)
Q Consensus 97 ~kg~~fV~f~~~~~a~~A~~~l~g 120 (153)
.+||.||+....+++..+++.+.+
T Consensus 45 fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 45 LKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred CCcEEEEEEEChHHHHHHHhcCCC
Confidence 467999999988888888877765
No 196
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=20.36 E-value=1.7e+02 Score=21.79 Aligned_cols=50 Identities=10% Similarity=-0.100 Sum_probs=29.4
Q ss_pred CCHHHHHHhhcCC-CCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHH
Q 031746 65 STKREVAHIFRPF-VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALS 116 (153)
Q Consensus 65 ~te~~l~~~F~~~-G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~ 116 (153)
.|++.|.++..=- |.+..+.+.... +.....+|-.||.|.+.+.|.+.++
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~--~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHG--NKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccC--CCCCCCCCceEEEeecHHHHHhhhh
Confidence 4455444443211 566655443221 1123567889999999999887664
Done!