Query 031746
Match_columns 153
No_of_seqs 155 out of 1739
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 07:11:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031746.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031746hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 1.9E-24 6.5E-29 143.1 10.7 80 53-140 19-98 (99)
2 2dnz_A Probable RNA-binding pr 99.9 2.4E-23 8.1E-28 135.9 13.7 89 52-148 4-92 (95)
3 1x5u_A Splicing factor 3B subu 99.9 4E-23 1.4E-27 137.3 13.0 91 52-150 14-104 (105)
4 2cpz_A CUG triplet repeat RNA- 99.9 5.2E-23 1.8E-27 139.0 13.6 88 52-147 24-111 (115)
5 2dgs_A DAZ-associated protein 99.9 1.1E-22 3.7E-27 133.9 13.7 88 53-149 10-97 (99)
6 1x5s_A Cold-inducible RNA-bind 99.9 7E-23 2.4E-27 135.4 12.2 87 52-146 11-97 (102)
7 2d9p_A Polyadenylate-binding p 99.9 2.2E-22 7.7E-27 133.3 14.6 89 51-149 13-101 (103)
8 2cq0_A Eukaryotic translation 99.9 1.2E-22 4.1E-27 134.6 13.3 87 52-146 14-100 (103)
9 2cqb_A Peptidyl-prolyl CIS-tra 99.9 4.5E-23 1.5E-27 136.3 10.9 89 53-149 12-100 (102)
10 2dng_A Eukaryotic translation 99.9 1.3E-22 4.6E-27 134.4 13.2 89 51-149 13-101 (103)
11 2dnm_A SRP46 splicing factor; 99.9 8.7E-23 3E-27 135.3 11.8 87 52-146 12-98 (103)
12 2cph_A RNA binding motif prote 99.9 2.3E-22 7.9E-27 133.9 13.7 87 52-146 14-102 (107)
13 2cpe_A RNA-binding protein EWS 99.9 1E-22 3.5E-27 137.0 12.0 88 52-147 14-109 (113)
14 3s8s_A Histone-lysine N-methyl 99.9 4.2E-23 1.4E-27 139.1 9.7 81 53-141 6-86 (110)
15 1whw_A Hypothetical protein ri 99.9 1.5E-22 5.1E-27 133.1 12.2 89 52-148 7-95 (99)
16 1wi8_A EIF-4B, eukaryotic tran 99.9 1.5E-22 5.2E-27 134.4 12.2 86 51-146 13-99 (104)
17 1x5t_A Splicing factor 3B subu 99.9 5.7E-23 2E-27 134.3 9.9 86 53-146 5-91 (96)
18 2dgp_A Bruno-like 4, RNA bindi 99.9 1.5E-22 5E-27 134.7 11.2 89 52-145 12-100 (106)
19 1u6f_A Tcubp1, RNA-binding pro 99.9 2.4E-22 8.2E-27 139.8 12.7 87 51-145 40-126 (139)
20 2la6_A RNA-binding protein FUS 99.9 2.8E-22 9.7E-27 132.0 12.3 82 50-139 10-99 (99)
21 2do4_A Squamous cell carcinoma 99.9 5.9E-22 2E-26 130.6 13.6 83 53-144 17-99 (100)
22 3bs9_A Nucleolysin TIA-1 isofo 99.9 1.4E-22 4.6E-27 130.2 10.1 82 52-141 5-86 (87)
23 1x4h_A RNA-binding protein 28; 99.9 5.6E-22 1.9E-26 132.8 13.4 86 52-145 14-105 (111)
24 3ex7_B RNA-binding protein 8A; 99.9 1.5E-22 5E-27 138.7 10.4 83 53-143 22-104 (126)
25 1x4a_A Splicing factor, argini 99.9 7.3E-22 2.5E-26 132.1 13.5 83 52-145 21-103 (109)
26 2cpf_A RNA binding motif prote 99.9 2.6E-22 9E-27 131.7 10.8 88 53-145 5-92 (98)
27 2dnh_A Bruno-like 5, RNA bindi 99.9 1.2E-21 4.2E-26 130.0 14.2 88 53-146 15-102 (105)
28 2cqi_A Nucleolysin TIAR; RNA r 99.9 6.3E-22 2.2E-26 131.1 12.7 85 52-146 14-98 (103)
29 2dgo_A Cytotoxic granule-assoc 99.9 9.3E-22 3.2E-26 132.7 13.7 85 52-144 14-98 (115)
30 1p27_B RNA-binding protein 8A; 99.9 3E-22 1E-26 133.2 11.1 84 52-143 22-105 (106)
31 2cq3_A RNA-binding protein 9; 99.9 1.3E-21 4.3E-26 129.6 14.0 85 52-146 14-98 (103)
32 2kxn_B Transformer-2 protein h 99.9 3.4E-22 1.2E-26 138.2 11.5 85 52-144 45-129 (129)
33 2div_A TRNA selenocysteine ass 99.9 2.8E-22 9.5E-27 131.8 10.5 87 52-142 8-95 (99)
34 2fy1_A RNA-binding motif prote 99.9 5.6E-22 1.9E-26 134.6 12.0 83 52-143 6-88 (116)
35 2e5h_A Zinc finger CCHC-type a 99.9 6.5E-22 2.2E-26 128.8 11.6 79 53-139 16-94 (94)
36 2cpi_A CCR4-NOT transcription 99.9 7.4E-22 2.5E-26 132.8 12.0 85 53-142 15-102 (111)
37 3p5t_L Cleavage and polyadenyl 99.9 7.1E-23 2.4E-27 132.8 6.7 83 54-144 2-86 (90)
38 2khc_A Testis-specific RNP-typ 99.9 1.1E-21 3.7E-26 132.9 12.8 82 50-139 37-118 (118)
39 3md1_A Nuclear and cytoplasmic 99.9 7.3E-22 2.5E-26 125.7 11.2 81 54-142 2-82 (83)
40 4f25_A Polyadenylate-binding p 99.9 3.7E-22 1.2E-26 135.2 10.3 82 53-144 5-86 (115)
41 2dgv_A HnRNP M, heterogeneous 99.9 8.4E-22 2.9E-26 127.8 11.6 82 52-143 7-88 (92)
42 2fc8_A NCL protein; structure 99.9 1.5E-21 5.2E-26 128.9 12.8 87 52-149 14-100 (102)
43 2cqc_A Arginine/serine-rich sp 99.9 8.4E-22 2.9E-26 128.4 11.3 81 52-140 14-94 (95)
44 2lxi_A RNA-binding protein 10; 99.9 4.3E-23 1.5E-27 134.4 5.1 83 53-143 1-85 (91)
45 2lkz_A RNA-binding protein 5; 99.9 1.8E-22 6.3E-27 132.7 8.1 81 52-140 8-94 (95)
46 2do0_A HnRNP M, heterogeneous 99.9 3.1E-21 1.1E-25 129.9 14.2 83 53-144 15-97 (114)
47 2x1f_A MRNA 3'-END-processing 99.9 6.6E-22 2.2E-26 129.5 10.3 82 53-142 2-83 (96)
48 3mdf_A Peptidyl-prolyl CIS-tra 99.9 5.6E-22 1.9E-26 126.8 9.6 80 52-139 6-85 (85)
49 4a8x_A RNA-binding protein wit 99.9 4.7E-22 1.6E-26 127.8 9.2 84 53-144 4-88 (88)
50 1oo0_B CG8781-PA, drosophila Y 99.9 5.6E-22 1.9E-26 132.8 9.7 84 53-144 26-109 (110)
51 2jrs_A RNA-binding protein 39; 99.9 2.3E-21 7.8E-26 130.0 12.3 81 53-141 26-106 (108)
52 1x4c_A Splicing factor, argini 99.9 2.4E-21 8.2E-26 129.6 12.3 82 52-143 14-95 (108)
53 2cpx_A Hypothetical protein FL 99.9 4.4E-22 1.5E-26 134.2 8.7 85 51-147 23-111 (115)
54 2dh8_A DAZ-associated protein 99.9 9.4E-22 3.2E-26 130.7 10.1 86 53-147 16-101 (105)
55 1h2v_Z 20 kDa nuclear CAP bind 99.9 2.1E-21 7.1E-26 137.7 12.1 84 52-143 38-121 (156)
56 2dhg_A TRNA selenocysteine ass 99.9 2.6E-21 8.9E-26 128.2 11.8 85 52-145 8-94 (104)
57 1x4b_A Heterogeneous nuclear r 99.9 9.3E-22 3.2E-26 133.0 9.6 86 53-147 27-112 (116)
58 2m2b_A RNA-binding protein 10; 99.9 9.9E-22 3.4E-26 135.8 9.6 83 52-143 22-110 (131)
59 2dgx_A KIAA0430 protein; RRM d 99.9 1.5E-21 5.2E-26 128.0 9.9 83 52-145 8-94 (96)
60 1rk8_A CG8781-PA, CG8781-PA pr 99.9 1.4E-21 4.9E-26 139.9 10.6 88 52-147 71-158 (165)
61 2dnq_A RNA-binding protein 4B; 99.9 4.3E-21 1.5E-25 124.2 11.9 81 52-148 7-87 (90)
62 2cq4_A RNA binding motif prote 99.9 2E-22 6.8E-27 135.9 5.5 83 52-143 24-106 (114)
63 2cqg_A TDP-43, TAR DNA-binding 99.9 9.1E-21 3.1E-25 125.5 13.3 82 53-144 15-96 (103)
64 1wez_A HnRNP H', FTP-3, hetero 99.9 4.9E-21 1.7E-25 127.2 11.9 79 53-142 15-93 (102)
65 2cqd_A RNA-binding region cont 99.9 7.7E-21 2.6E-25 128.4 13.0 80 52-140 16-95 (116)
66 1x5o_A RNA binding motif, sing 99.9 2.6E-20 9E-25 125.4 15.4 86 52-141 24-112 (114)
67 2cqp_A RNA-binding protein 12; 99.9 1.5E-21 5E-26 128.2 8.9 81 53-141 15-95 (98)
68 2ywk_A Putative RNA-binding pr 99.9 2E-21 6.8E-26 126.7 9.5 80 52-140 15-94 (95)
69 2fc9_A NCL protein; structure 99.9 6E-21 2E-25 125.9 11.8 81 53-145 15-95 (101)
70 2kn4_A Immunoglobulin G-bindin 99.9 4.7E-21 1.6E-25 135.8 11.6 86 53-146 70-155 (158)
71 2cq1_A PTB-like protein L; RRM 99.9 1.7E-20 5.8E-25 124.6 13.4 80 52-145 14-95 (101)
72 1x4e_A RNA binding motif, sing 99.9 8.9E-22 3.1E-26 126.0 6.9 80 52-139 4-83 (85)
73 3ns6_A Eukaryotic translation 99.9 6.6E-22 2.3E-26 130.8 6.4 81 53-140 6-92 (100)
74 2jwn_A Embryonic polyadenylate 99.9 4.3E-21 1.5E-25 131.0 10.4 82 53-143 36-117 (124)
75 2j76_E EIF-4B, EIF4B, eukaryot 99.9 1.3E-21 4.5E-26 129.2 7.4 83 50-141 16-98 (100)
76 3ucg_A Polyadenylate-binding p 99.9 4.3E-21 1.5E-25 123.6 9.7 80 53-141 6-85 (89)
77 2cpj_A Non-POU domain-containi 99.9 1.4E-20 4.8E-25 123.8 12.1 82 53-148 15-96 (99)
78 1why_A Hypothetical protein ri 99.9 2E-20 6.8E-25 122.6 12.7 79 53-143 17-95 (97)
79 2lea_A Serine/arginine-rich sp 99.8 2E-21 6.9E-26 135.2 8.1 86 52-145 46-131 (135)
80 2err_A Ataxin-2-binding protei 99.8 3.9E-21 1.3E-25 128.9 9.2 81 51-141 27-107 (109)
81 2dgt_A RNA-binding protein 30; 99.8 1.2E-20 4.3E-25 122.5 11.1 81 52-148 9-89 (92)
82 3ulh_A THO complex subunit 4; 99.8 1.1E-20 3.7E-25 125.8 11.0 79 52-139 28-106 (107)
83 3n9u_C Cleavage and polyadenyl 99.8 5.9E-21 2E-25 136.0 9.9 80 53-140 55-136 (156)
84 2rs2_A Musashi-1, RNA-binding 99.8 6.4E-21 2.2E-25 127.9 9.5 85 51-144 23-107 (109)
85 2kt5_A RNA and export factor-b 99.8 6.4E-20 2.2E-24 125.3 14.5 84 51-143 33-116 (124)
86 1x4d_A Matrin 3; structural ge 99.8 1.1E-20 3.7E-25 125.7 10.3 76 52-141 14-92 (102)
87 1wg5_A Heterogeneous nuclear r 99.8 3.3E-20 1.1E-24 123.3 12.6 84 52-145 14-98 (104)
88 1sjq_A Polypyrimidine tract-bi 99.8 5.7E-21 2E-25 127.6 8.7 80 52-145 15-96 (105)
89 1wf1_A RNA-binding protein RAL 99.8 2.5E-20 8.4E-25 124.9 11.8 82 53-150 27-109 (110)
90 1p1t_A Cleavage stimulation fa 99.8 7E-21 2.4E-25 126.0 9.0 83 53-143 8-90 (104)
91 2e5j_A Methenyltetrahydrofolat 99.8 1.9E-20 6.4E-25 122.8 10.9 78 53-143 19-96 (97)
92 1fj7_A Nucleolin RBD1, protein 99.8 8.8E-22 3E-26 129.9 4.5 84 52-145 16-99 (101)
93 2dgw_A Probable RNA-binding pr 99.8 2.1E-20 7.1E-25 121.1 10.9 79 52-141 9-87 (91)
94 2ek1_A RNA-binding protein 12; 99.8 3.3E-21 1.1E-25 125.6 7.0 79 53-139 15-93 (95)
95 1s79_A Lupus LA protein; RRM, 99.8 7.4E-21 2.5E-25 126.7 8.8 78 53-140 11-88 (103)
96 1wex_A Hypothetical protein (r 99.8 3.1E-20 1.1E-24 123.9 11.8 78 53-144 15-94 (104)
97 3s7r_A Heterogeneous nuclear r 99.8 1.8E-20 6.1E-25 120.4 10.2 78 52-138 10-87 (87)
98 2a3j_A U1 small nuclear ribonu 99.8 1.6E-20 5.6E-25 129.5 10.2 79 53-142 29-111 (127)
99 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.3E-20 7.9E-25 129.5 10.9 79 52-138 62-140 (140)
100 2dnp_A RNA-binding protein 14; 99.8 2.5E-20 8.7E-25 120.5 10.2 79 53-147 9-87 (90)
101 1wel_A RNA-binding protein 12; 99.8 1.2E-20 4E-25 129.2 8.9 81 51-140 23-103 (124)
102 2jvr_A Nucleolar protein 3; RN 99.8 4.9E-21 1.7E-25 129.3 6.6 79 53-143 28-107 (111)
103 2ad9_A Polypyrimidine tract-bi 99.8 6E-20 2.1E-24 125.2 11.9 79 53-145 31-111 (119)
104 2dis_A Unnamed protein product 99.8 1.6E-20 5.6E-25 125.3 9.0 82 53-142 8-93 (109)
105 2cpd_A Apobec-1 stimulating pr 99.8 1.2E-19 4E-24 119.4 12.8 76 52-143 14-91 (99)
106 2mss_A Protein (musashi1); RNA 99.8 9.2E-21 3.2E-25 118.5 7.1 75 55-138 1-75 (75)
107 2lcw_A RNA-binding protein FUS 99.7 2.6E-22 8.9E-27 135.8 0.0 85 53-145 7-99 (116)
108 3r27_A HnRNP L, heterogeneous 99.8 2.5E-20 8.6E-25 123.4 9.6 75 53-141 21-97 (100)
109 2nlw_A Eukaryotic translation 99.8 1.9E-20 6.4E-25 124.7 8.9 79 53-140 15-99 (105)
110 2hvz_A Splicing factor, argini 99.8 1.8E-20 6E-25 123.7 8.5 79 54-145 1-79 (101)
111 2jvo_A Nucleolar protein 3; nu 99.8 3.1E-20 1E-24 124.5 9.7 77 52-144 30-106 (108)
112 2ki2_A SS-DNA binding protein 99.8 3.4E-21 1.2E-25 124.5 4.5 80 54-142 2-81 (90)
113 2db1_A Heterogeneous nuclear r 99.8 2.7E-20 9.2E-25 126.6 9.0 79 52-140 16-97 (118)
114 3lqv_A PRE-mRNA branch site pr 99.8 6.1E-20 2.1E-24 123.7 10.7 80 51-141 6-85 (115)
115 2xnq_A Nuclear polyadenylated 99.8 7.3E-20 2.5E-24 120.3 10.3 75 51-141 20-95 (97)
116 2cqh_A IGF-II mRNA-binding pro 99.8 4.7E-20 1.6E-24 119.9 9.1 82 53-149 8-91 (93)
117 1x4g_A Nucleolysin TIAR; struc 99.8 7.6E-20 2.6E-24 122.3 10.4 77 53-143 25-101 (109)
118 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.4E-20 4.9E-25 118.0 6.5 76 54-138 1-76 (77)
119 2cpy_A RNA-binding protein 12; 99.8 3.1E-20 1.1E-24 125.4 8.3 79 52-140 14-93 (114)
120 1fjc_A Nucleolin RBD2, protein 99.8 2E-20 6.9E-25 122.2 7.2 79 52-143 15-93 (96)
121 4f02_A Polyadenylate-binding p 99.8 8E-20 2.7E-24 135.5 10.9 82 52-141 14-95 (213)
122 2krb_A Eukaryotic translation 99.8 2E-20 6.8E-25 118.9 6.5 73 54-135 2-80 (81)
123 2dgu_A Heterogeneous nuclear r 99.8 1.6E-19 5.3E-24 119.6 11.0 75 53-143 11-85 (103)
124 3q2s_C Cleavage and polyadenyl 99.8 3.5E-20 1.2E-24 139.5 8.8 80 52-139 67-148 (229)
125 2ytc_A PRE-mRNA-splicing facto 99.8 1.1E-19 3.7E-24 116.1 9.9 73 53-139 12-85 (85)
126 1nu4_A U1A RNA binding domain; 99.8 3E-20 1E-24 121.5 7.1 80 52-142 7-90 (97)
127 2f3j_A RNA and export factor b 99.8 3.8E-19 1.3E-23 129.0 13.6 82 51-141 86-167 (177)
128 1x4f_A Matrin 3; structural ge 99.8 2.4E-19 8.2E-24 121.1 11.7 76 52-141 24-102 (112)
129 3beg_B Splicing factor, argini 99.8 1.1E-19 3.7E-24 123.0 10.0 79 53-141 16-94 (115)
130 2hgl_A HNRPF protein, heteroge 99.8 4.3E-20 1.5E-24 128.8 8.1 79 52-140 43-124 (136)
131 1x5p_A Negative elongation fac 99.8 6.6E-19 2.3E-23 115.4 12.3 79 52-146 14-92 (97)
132 1sjr_A Polypyrimidine tract-bi 99.8 1.7E-19 5.9E-24 129.0 10.1 79 53-141 46-124 (164)
133 2wbr_A GW182, gawky, LD47780P; 99.8 7.4E-20 2.5E-24 118.0 7.3 73 53-139 7-79 (89)
134 2e5i_A Heterogeneous nuclear r 99.8 1.2E-18 4.2E-23 119.6 13.5 76 54-141 26-102 (124)
135 2lmi_A GRSF-1, G-rich sequence 99.8 5.5E-20 1.9E-24 122.8 6.6 80 51-140 9-91 (107)
136 2hgn_A Heterogeneous nuclear r 99.8 3E-20 1E-24 130.0 5.3 81 52-143 45-125 (139)
137 2kvi_A Nuclear polyadenylated 99.8 2.9E-19 9.9E-24 117.0 9.6 74 53-142 10-84 (96)
138 2i2y_A Fusion protein consists 99.8 4.2E-19 1.4E-23 125.0 10.5 77 52-141 72-148 (150)
139 2dnn_A RNA-binding protein 12; 99.8 1.9E-19 6.5E-24 121.0 8.3 77 53-140 16-92 (109)
140 2la4_A Nuclear and cytoplasmic 99.8 1.9E-19 6.3E-24 118.7 7.8 74 53-140 27-100 (101)
141 1whx_A Hypothetical protein ri 99.8 3E-19 1E-23 120.1 8.9 74 53-140 10-83 (111)
142 3egn_A RNA-binding protein 40; 99.8 2.1E-19 7.3E-24 125.6 8.3 85 52-145 44-134 (143)
143 3pgw_S U1-70K; protein-RNA com 99.8 6.3E-19 2.2E-23 143.8 12.2 82 52-141 101-182 (437)
144 3md3_A Nuclear and cytoplasmic 99.8 1.3E-18 4.5E-23 122.6 12.2 80 52-139 86-165 (166)
145 2qfj_A FBP-interacting repress 99.8 1.3E-18 4.5E-23 127.9 12.6 83 53-143 125-207 (216)
146 2e5g_A U6 snRNA-specific termi 99.8 9.9E-19 3.4E-23 113.9 10.5 77 53-143 8-84 (94)
147 1iqt_A AUF1, heterogeneous nuc 99.8 6.2E-20 2.1E-24 114.6 4.4 75 55-138 1-75 (75)
148 1b7f_A Protein (SXL-lethal pro 99.8 7.5E-19 2.6E-23 124.4 10.3 82 53-142 3-84 (168)
149 1l3k_A Heterogeneous nuclear r 99.8 1.9E-19 6.6E-24 130.6 7.4 84 53-145 104-187 (196)
150 1fxl_A Paraneoplastic encephal 99.8 1.2E-18 4E-23 123.0 11.2 81 53-141 2-82 (167)
151 2e44_A Insulin-like growth fac 99.8 8.4E-19 2.9E-23 114.4 9.4 78 52-141 14-92 (96)
152 3zzy_A Polypyrimidine tract-bi 99.8 9.7E-19 3.3E-23 120.8 10.1 78 53-141 28-106 (130)
153 2yh0_A Splicing factor U2AF 65 99.8 2.1E-18 7.1E-23 125.3 12.3 85 51-143 112-196 (198)
154 2hgm_A HNRPF protein, heteroge 99.8 6.4E-19 2.2E-23 121.3 8.2 78 52-140 41-120 (126)
155 1wg1_A KIAA1579 protein, homol 99.8 1.8E-18 6E-23 111.5 9.5 74 53-141 5-78 (88)
156 2g4b_A Splicing factor U2AF 65 99.8 2.4E-18 8.3E-23 122.3 10.8 79 53-139 94-172 (172)
157 1b7f_A Protein (SXL-lethal pro 99.8 7E-18 2.4E-22 119.4 12.4 80 53-138 89-168 (168)
158 3d2w_A TAR DNA-binding protein 99.8 1.8E-18 6.2E-23 112.0 8.5 75 53-142 11-85 (89)
159 3nmr_A Cugbp ELAV-like family 99.8 4.5E-18 1.5E-22 121.0 11.0 85 52-141 2-88 (175)
160 2cq2_A Hypothetical protein LO 99.8 1.6E-18 5.6E-23 117.2 8.1 79 53-141 25-106 (114)
161 4f02_A Polyadenylate-binding p 99.8 2.9E-18 9.9E-23 127.1 9.9 78 53-140 103-180 (213)
162 2dha_A FLJ20171 protein; RRM d 99.8 7.8E-19 2.7E-23 120.4 6.3 78 52-139 22-103 (123)
163 3tyt_A Heterogeneous nuclear r 99.8 2.8E-18 9.5E-23 127.0 9.8 76 53-141 4-80 (205)
164 3nmr_A Cugbp ELAV-like family 99.8 4.7E-18 1.6E-22 120.9 10.6 81 53-139 95-175 (175)
165 2xs2_A Deleted in azoospermia- 99.8 6.8E-19 2.3E-23 116.2 5.5 78 53-141 9-86 (102)
166 1l3k_A Heterogeneous nuclear r 99.8 3.7E-18 1.3E-22 123.8 9.7 81 52-141 12-92 (196)
167 3md3_A Nuclear and cytoplasmic 99.8 5.6E-18 1.9E-22 119.4 10.1 80 54-142 1-80 (166)
168 2diu_A KIAA0430 protein; struc 99.8 6.5E-18 2.2E-22 110.0 9.4 71 53-141 8-84 (96)
169 1fxl_A Paraneoplastic encephal 99.8 9.8E-18 3.3E-22 118.2 11.2 80 53-138 88-167 (167)
170 1wf0_A TDP-43, TAR DNA-binding 99.7 4.1E-18 1.4E-22 109.6 8.0 78 53-145 5-82 (88)
171 2cjk_A Nuclear polyadenylated 99.7 2.8E-18 9.6E-23 121.5 7.6 80 53-141 87-166 (167)
172 2qfj_A FBP-interacting repress 99.7 1.1E-17 3.6E-22 123.0 10.4 81 53-141 28-108 (216)
173 2bz2_A Negative elongation fac 99.7 1.2E-17 4E-22 114.1 9.6 77 52-144 38-114 (121)
174 2dnl_A Cytoplasmic polyadenyla 99.7 4.3E-18 1.5E-22 114.8 7.3 70 53-123 8-80 (114)
175 2j8a_A Histone-lysine N-methyl 99.7 6E-18 2.1E-22 116.1 6.7 79 54-140 3-95 (136)
176 2hzc_A Splicing factor U2AF 65 99.7 8.8E-18 3E-22 107.5 6.9 70 53-137 6-86 (87)
177 3pgw_A U1-A; protein-RNA compl 99.7 4.3E-17 1.5E-21 124.9 11.8 80 52-142 8-91 (282)
178 1fje_B Nucleolin RBD12, protei 99.7 3.1E-17 1.1E-21 117.1 9.3 77 52-141 98-174 (175)
179 2adc_A Polypyrimidine tract-bi 99.7 6E-17 2.1E-21 121.1 10.0 77 52-141 33-110 (229)
180 3pgw_A U1-A; protein-RNA compl 99.7 1.8E-16 6.2E-21 121.4 12.9 75 52-139 206-281 (282)
181 2pe8_A Splicing factor 45; RRM 99.7 1.2E-16 4.3E-21 106.5 10.4 82 52-140 7-93 (105)
182 3tyt_A Heterogeneous nuclear r 99.7 3E-17 1E-21 121.4 8.0 80 53-138 123-204 (205)
183 2voo_A Lupus LA protein; RNA-b 99.7 9.2E-17 3.2E-21 117.8 9.9 78 53-140 109-186 (193)
184 2cjk_A Nuclear polyadenylated 99.7 3.5E-17 1.2E-21 115.8 7.2 78 53-140 3-80 (167)
185 3u1l_A PRE-mRNA-splicing facto 99.7 5.2E-17 1.8E-21 122.8 8.3 81 52-141 133-229 (240)
186 3smz_A Protein raver-1, ribonu 99.7 1E-16 3.5E-21 122.8 9.7 82 53-143 184-266 (284)
187 1qm9_A Polypyrimidine tract-bi 99.7 4.1E-16 1.4E-20 113.6 11.0 78 52-141 119-197 (198)
188 2ghp_A U4/U6 snRNA-associated 99.7 1.1E-16 3.7E-21 123.2 8.4 82 52-141 209-291 (292)
189 3smz_A Protein raver-1, ribonu 99.7 3.5E-16 1.2E-20 119.9 10.7 82 53-142 95-176 (284)
190 2dit_A HIV TAT specific factor 99.7 1E-15 3.5E-20 102.8 11.5 79 52-142 14-103 (112)
191 2adc_A Polypyrimidine tract-bi 99.7 7.9E-16 2.7E-20 115.0 11.6 75 53-140 151-227 (229)
192 1qm9_A Polypyrimidine tract-bi 99.7 2.4E-16 8.1E-21 114.8 7.9 76 53-141 3-79 (198)
193 1fje_B Nucleolin RBD12, protei 99.6 4.6E-17 1.6E-21 116.3 3.0 82 51-142 11-92 (175)
194 3sde_A Paraspeckle component 1 99.6 1.4E-15 4.9E-20 115.8 10.2 83 53-141 96-179 (261)
195 3sde_A Paraspeckle component 1 99.6 1.2E-15 4E-20 116.2 9.7 75 52-140 21-95 (261)
196 2yh0_A Splicing factor U2AF 65 99.6 1.4E-15 4.9E-20 110.2 7.5 74 53-141 4-88 (198)
197 2ghp_A U4/U6 snRNA-associated 99.6 1.6E-15 5.6E-20 116.6 8.1 80 53-141 117-197 (292)
198 2g4b_A Splicing factor U2AF 65 99.6 2.3E-15 8E-20 106.8 7.8 74 53-141 4-88 (172)
199 1jmt_A Splicing factor U2AF 35 99.6 4.4E-16 1.5E-20 103.6 3.4 73 58-139 20-104 (104)
200 3v4m_A Splicing factor U2AF 65 99.6 4.1E-15 1.4E-19 99.1 8.0 82 53-140 5-96 (105)
201 3tht_A Alkylated DNA repair pr 99.6 3.1E-15 1.1E-19 118.4 8.6 80 51-139 16-97 (345)
202 2d9o_A DNAJ (HSP40) homolog, s 99.6 2E-14 6.9E-19 95.0 9.5 68 63-145 27-94 (100)
203 3ue2_A Poly(U)-binding-splicin 99.6 1.5E-14 5.3E-19 98.3 9.1 82 53-139 20-107 (118)
204 3s6e_A RNA-binding protein 39; 99.4 6.4E-13 2.2E-17 89.7 9.2 76 52-139 6-91 (114)
205 1owx_A Lupus LA protein, SS-B, 99.3 2.2E-11 7.6E-16 82.8 10.5 73 52-138 17-93 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.2 1.9E-11 6.6E-16 78.7 7.1 72 53-141 7-86 (91)
207 3dxb_A Thioredoxin N-terminall 99.1 7.1E-10 2.4E-14 82.1 9.3 71 64-139 140-211 (222)
208 1ufw_A Synaptojanin 2; RNP dom 99.0 3.6E-10 1.2E-14 73.2 4.9 70 53-139 15-93 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.6 1.4E-07 4.9E-12 62.4 7.2 70 53-136 21-95 (117)
210 1whv_A Poly(A)-specific ribonu 98.2 1.2E-05 4.2E-10 52.0 8.3 55 53-119 16-70 (100)
211 1uw4_A UPF3X; nonsense mediate 98.1 4.6E-05 1.6E-09 48.9 10.0 86 54-140 2-87 (91)
212 1wey_A Calcipressin 1; structu 98.0 1.3E-05 4.3E-10 52.6 5.3 74 54-141 6-84 (104)
213 2dhx_A Poly (ADP-ribose) polym 97.7 0.0002 6.8E-09 46.8 7.2 61 53-125 8-73 (104)
214 3ctr_A Poly(A)-specific ribonu 97.7 7.4E-05 2.5E-09 48.5 5.1 54 54-119 7-60 (101)
215 2l08_A Regulator of nonsense t 97.5 0.00034 1.2E-08 45.2 7.0 87 53-140 9-95 (97)
216 1wwh_A Nucleoporin 35, nucleop 96.9 0.0054 1.9E-07 41.0 7.4 63 53-126 24-86 (119)
217 3pq1_A Poly(A) RNA polymerase; 96.8 0.00059 2E-08 55.8 2.7 54 53-115 53-106 (464)
218 2kn4_A Immunoglobulin G-bindin 96.6 0.0019 6.5E-08 44.5 4.0 34 83-121 3-36 (158)
219 2i2y_A Fusion protein consists 95.8 0.0033 1.1E-07 43.1 1.7 41 94-140 9-50 (150)
220 3d45_A Poly(A)-specific ribonu 95.2 0.069 2.4E-06 44.1 7.9 56 53-120 440-495 (507)
221 3p3d_A Nucleoporin 53; structu 94.2 0.036 1.2E-06 37.6 3.2 78 53-137 7-95 (132)
222 4f25_A Polyadenylate-binding p 90.5 0.0073 2.5E-07 39.5 -4.1 17 53-69 97-113 (115)
223 3fut_A Dimethyladenosine trans 52.6 10 0.00034 28.4 3.0 32 54-86 111-142 (271)
224 2g0c_A ATP-dependent RNA helic 51.8 33 0.0011 19.9 5.9 68 55-139 2-75 (76)
225 3uzu_A Ribosomal RNA small sub 49.6 5.8 0.0002 29.8 1.2 34 54-87 115-148 (279)
226 1qyr_A KSGA, high level kasuga 44.7 15 0.00051 27.0 2.8 32 54-85 91-122 (252)
227 3tqs_A Ribosomal RNA small sub 40.2 6.5 0.00022 29.1 0.2 32 55-86 98-129 (255)
228 1i4w_A Mitochondrial replicati 40.2 11 0.00037 29.5 1.5 22 55-76 144-165 (353)
229 2i9x_A Putative septation prot 39.9 47 0.0016 20.5 4.1 48 79-139 5-52 (87)
230 4e8u_A Putative uncharacterize 37.7 88 0.003 21.8 5.7 48 55-108 14-72 (172)
231 2cu1_A Mitogen-activated prote 36.2 83 0.0028 20.0 5.8 66 59-141 22-88 (103)
232 3ts2_A Protein LIN-28 homolog 36.2 9.6 0.00033 25.9 0.5 28 68-106 2-29 (148)
233 3ftd_A Dimethyladenosine trans 35.7 16 0.00054 26.8 1.7 25 54-78 96-120 (249)
234 3lpe_A Putative transcription 35.0 26 0.0009 21.6 2.4 24 97-120 49-72 (92)
235 2i9z_A Putative septation prot 34.6 62 0.0021 20.7 4.2 48 79-139 5-52 (105)
236 2ia9_A Putative septation prot 34.6 62 0.0021 20.5 4.1 48 79-139 5-52 (100)
237 2okq_A Hypothetical protein YB 33.9 1.1E+02 0.0037 20.6 5.8 48 70-117 50-109 (141)
238 4eyt_A Telomerase associated p 27.6 1.2E+02 0.004 19.0 8.1 57 52-119 11-67 (129)
239 1ik9_C DNA ligase IV; DNA END 27.5 38 0.0013 17.2 1.9 15 63-77 20-34 (37)
240 3p8b_B Transcription antitermi 20.9 64 0.0022 21.5 2.6 24 97-120 42-65 (152)
241 3swz_A Steroid 17-alpha-hydrox 20.4 1.1E+02 0.0038 23.7 4.2 49 55-115 16-68 (494)
242 2ki0_A DS119; beta-alpha-beta, 20.3 42 0.0014 16.5 1.1 18 53-75 5-22 (36)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.92 E-value=1.9e-24 Score=143.08 Aligned_cols=80 Identities=24% Similarity=0.445 Sum_probs=75.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
+++|||+|||+++|+++|+++|++||.|.+++++.++ .+|+++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~---~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g-----r~ 90 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDK---VAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS-----KT 90 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECS---SSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecC---CCCcccccEEEEECCHHHHHHHHHHhCCCEECC-----EE
Confidence 6899999999999999999999999999999999887 679999999999999999999999999999987 57
Q ss_pred EEEEeecC
Q 031746 133 LRLQFSRN 140 (153)
Q Consensus 133 l~V~~a~~ 140 (153)
|+|+||+|
T Consensus 91 l~V~~AkP 98 (99)
T 4fxv_A 91 IKVSYARP 98 (99)
T ss_dssp CEEEECCB
T ss_pred EEEEEeeC
Confidence 99999974
No 2
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=2.4e-23 Score=135.92 Aligned_cols=89 Identities=25% Similarity=0.347 Sum_probs=79.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
++++|||+|||+++++++|+++|++||.|.++.++.+. .+++++|||||+|.+.++|++|++.|||..+.++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 75 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDS---DTGRSKGYGFITFSDSECARRALEQLNGFELAGR----- 75 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCS---SSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSS-----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecC---CCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCc-----
Confidence 36899999999999999999999999999999998876 5688999999999999999999999999999874
Q ss_pred cEEEEeecCCCCCCCCC
Q 031746 132 FLRLQFSRNPGPRSVFG 148 (153)
Q Consensus 132 ~l~V~~a~~~~~r~~~~ 148 (153)
.|+|++++++..+..++
T Consensus 76 ~l~V~~a~~~~~~~~~~ 92 (95)
T 2dnz_A 76 PMRVGHVTERLDGGSGP 92 (95)
T ss_dssp CCEEEESSCCCCCCCCC
T ss_pred EEEEEEcccccCCCCCC
Confidence 69999999765554433
No 3
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=4e-23 Score=137.29 Aligned_cols=91 Identities=14% Similarity=0.118 Sum_probs=81.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..|.++.+. .+++++|||||+|.+.++|++|++.|||..|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 85 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDR---VTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK----- 85 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCS---SSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC---CCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe-----
Confidence 36899999999999999999999999999999998876 5688999999999999999999999999999874
Q ss_pred cEEEEeecCCCCCCCCCCC
Q 031746 132 FLRLQFSRNPGPRSVFGAR 150 (153)
Q Consensus 132 ~l~V~~a~~~~~r~~~~~~ 150 (153)
.|+|++++.++.+...++.
T Consensus 86 ~l~v~~a~~~~~~~~~~~~ 104 (105)
T 1x5u_A 86 PIRVNKASAHNKNLSGPSS 104 (105)
T ss_dssp BCEEEETTTTSCCCCCCCC
T ss_pred EEEEEECCCCCcCCCCCCC
Confidence 7999999987665554443
No 4
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.90 E-value=5.2e-23 Score=138.98 Aligned_cols=88 Identities=20% Similarity=0.443 Sum_probs=79.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|.+|+++.++ .+++++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 95 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDK---QTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM-----K 95 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECS---SSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---CCCCcCccEEEEECCHHHHHHHHHHcCCCEECC-----E
Confidence 36899999999999999999999999999999999876 578999999999999999999999999999987 4
Q ss_pred cEEEEeecCCCCCCCC
Q 031746 132 FLRLQFSRNPGPRSVF 147 (153)
Q Consensus 132 ~l~V~~a~~~~~r~~~ 147 (153)
.|+|+|++++..+..+
T Consensus 96 ~l~V~~a~~~~~~~~~ 111 (115)
T 2cpz_A 96 RLKVQLKRSKNDSKSG 111 (115)
T ss_dssp ECEEECCCCSCCCCCC
T ss_pred EEEEEEcCCCCcCCCC
Confidence 7999999976555543
No 5
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=1.1e-22 Score=133.92 Aligned_cols=88 Identities=17% Similarity=0.285 Sum_probs=78.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|.++.++.++ .+++++|||||+|.+.++|++|++ ||+..|.++ .
T Consensus 10 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~-----~ 80 (99)
T 2dgs_A 10 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDA---EKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGK-----K 80 (99)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCT---TTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSC-----B
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC---CCCCCCceEEEEECCHHHHHHHHH-hCCCEECCe-----E
Confidence 6899999999999999999999999999999998876 568899999999999999999998 999999874 6
Q ss_pred EEEEeecCCCCCCCCCC
Q 031746 133 LRLQFSRNPGPRSVFGA 149 (153)
Q Consensus 133 l~V~~a~~~~~r~~~~~ 149 (153)
|+|+++.++..+..+.+
T Consensus 81 l~V~~a~~~~~~~~~~~ 97 (99)
T 2dgs_A 81 VEVKRAEPRDSKSSGPS 97 (99)
T ss_dssp CEEEECCCCCCCCCCSS
T ss_pred EEEEECCCCcccCCCCC
Confidence 99999997766554433
No 6
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=7e-23 Score=135.41 Aligned_cols=87 Identities=23% Similarity=0.341 Sum_probs=78.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..++++.+. .+++++|||||+|.+.++|.+|++.|||..|.++
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 82 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDR---ETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR----- 82 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCS---SSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC-----
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCC---CCCCcccEEEEEECCHHHHHHHHHHhCCCEECCe-----
Confidence 36899999999999999999999999999999998876 5688999999999999999999999999999874
Q ss_pred cEEEEeecCCCCCCC
Q 031746 132 FLRLQFSRNPGPRSV 146 (153)
Q Consensus 132 ~l~V~~a~~~~~r~~ 146 (153)
.|+|++++.+..+..
T Consensus 83 ~l~v~~a~~~~~~~~ 97 (102)
T 1x5s_A 83 QIRVDQAGKSSDNRS 97 (102)
T ss_dssp CCEEEEEECCCCCCC
T ss_pred EEEEEECCCCCCCCC
Confidence 699999997654443
No 7
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=2.2e-22 Score=133.28 Aligned_cols=89 Identities=20% Similarity=0.326 Sum_probs=78.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 51 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 51 ~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
.+.++|||+|||+++++++|+++|++||.|..|.++.+ +|+++|||||+|.+.++|.+|++.|||..+.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---- 83 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-----GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK---- 83 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-----SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc----
Confidence 34789999999999999999999999999999999876 377899999999999999999999999999774
Q ss_pred ccEEEEeecCCCCCCCCCC
Q 031746 131 KFLRLQFSRNPGPRSVFGA 149 (153)
Q Consensus 131 r~l~V~~a~~~~~r~~~~~ 149 (153)
.|+|+|++++..+..+.+
T Consensus 84 -~l~V~~a~~~~~~~~~~~ 101 (103)
T 2d9p_A 84 -PLYVALAQRKEERQSGPS 101 (103)
T ss_dssp -BCEEEECSSCCCCCCCCC
T ss_pred -EEEEEEecccccCCCCCC
Confidence 799999998766554433
No 8
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=1.2e-22 Score=134.59 Aligned_cols=87 Identities=21% Similarity=0.429 Sum_probs=78.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..|.++.++ .+++++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 85 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDK---TTGQSKGFAFISFHRREDAARAIAGVSGFGYDH-----L 85 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECS---SSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecC---CCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC-----c
Confidence 36899999999999999999999999999999998876 568899999999999999999999999999987 4
Q ss_pred cEEEEeecCCCCCCC
Q 031746 132 FLRLQFSRNPGPRSV 146 (153)
Q Consensus 132 ~l~V~~a~~~~~r~~ 146 (153)
.|+|+|++++..+.+
T Consensus 86 ~l~v~~a~~~~~~~~ 100 (103)
T 2cq0_A 86 ILNVEWAKPSTNSGP 100 (103)
T ss_dssp ECEEEESSCCCCSCC
T ss_pred EEEEEECCCCCCCCC
Confidence 799999997655443
No 9
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=4.5e-23 Score=136.35 Aligned_cols=89 Identities=18% Similarity=0.295 Sum_probs=80.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|..|.++.+. .+++++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 12 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~~ 83 (102)
T 2cqb_A 12 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDY---ETEKHRGFAFVEFELAEDAAAAIDNMNESELFG-----RT 83 (102)
T ss_dssp CSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCS---SSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecC---CCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-----cE
Confidence 6899999999999999999999999999999998876 568899999999999999999999999999987 47
Q ss_pred EEEEeecCCCCCCCCCC
Q 031746 133 LRLQFSRNPGPRSVFGA 149 (153)
Q Consensus 133 l~V~~a~~~~~r~~~~~ 149 (153)
|+|+|++++..+..+.+
T Consensus 84 l~V~~a~~~~~~~~~~~ 100 (102)
T 2cqb_A 84 IRVNLAKPMRIKESGPS 100 (102)
T ss_dssp EEEEECCCCCCCCCCCC
T ss_pred EEEEeCCCCCCCCCCCC
Confidence 99999998766555443
No 10
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.90 E-value=1.3e-22 Score=134.44 Aligned_cols=89 Identities=21% Similarity=0.391 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 51 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 51 ~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
.+.++|||+|||+++++++|+++|++|| |.+|+++.++ .+|+++|||||+|.+.++|++|+ .|||..|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~---~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----- 82 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDK---DTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD----- 82 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECS---SSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT-----
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecC---CCCccceEEEEEECCHHHHHHHH-hhCCCeECC-----
Confidence 3468999999999999999999999996 9999999886 57899999999999999999999 999999987
Q ss_pred ccEEEEeecCCCCCCCCCC
Q 031746 131 KFLRLQFSRNPGPRSVFGA 149 (153)
Q Consensus 131 r~l~V~~a~~~~~r~~~~~ 149 (153)
+.|+|+++.....+..+.+
T Consensus 83 ~~l~V~~a~~~~~~~~~~~ 101 (103)
T 2dng_A 83 RSLRVDIAEGRKQDKSGPS 101 (103)
T ss_dssp EECEEEECCCCCCCCSSCC
T ss_pred eEEEEEEecCCCCCCCCCC
Confidence 4799999997655554433
No 11
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=8.7e-23 Score=135.27 Aligned_cols=87 Identities=22% Similarity=0.268 Sum_probs=78.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..+.++.+. .+++++|||||+|.+.++|++|++.|||..|.++
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 83 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREP---HTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR----- 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCS---SSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB-----
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCc-----
Confidence 36899999999999999999999999999999998876 5688999999999999999999999999999874
Q ss_pred cEEEEeecCCCCCCC
Q 031746 132 FLRLQFSRNPGPRSV 146 (153)
Q Consensus 132 ~l~V~~a~~~~~r~~ 146 (153)
.|+|++++...++..
T Consensus 84 ~l~V~~a~~~~~~~~ 98 (103)
T 2dnm_A 84 ELRVQVARYGRRDLS 98 (103)
T ss_dssp CCEEEECSSCCSCCC
T ss_pred EEEEEECCcCCCCCC
Confidence 699999997654443
No 12
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=2.3e-22 Score=133.88 Aligned_cols=87 Identities=26% Similarity=0.347 Sum_probs=78.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeec-CCccCCCCcceEEEEEeCCHHHHHHHHHHh-CCCccCCCCCC
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIK-ESKLRGGDPLILCFVDFENPACAATALSAL-QGYRMDEDDPD 129 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~-~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l-~g~~l~~~~~~ 129 (153)
+.++|||+|||+++++++|+++|++||.|..|+++.+ . .+++++|||||+|.+.++|++|++.| ||..|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~--- 87 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMT---GTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR--- 87 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCS---SSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC---
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCC---CCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC---
Confidence 3689999999999999999999999999999999876 4 46889999999999999999999999 99999874
Q ss_pred CccEEEEeecCCCCCCC
Q 031746 130 SKFLRLQFSRNPGPRSV 146 (153)
Q Consensus 130 ~r~l~V~~a~~~~~r~~ 146 (153)
.|+|+|+++...+..
T Consensus 88 --~l~v~~a~~~~~~~~ 102 (107)
T 2cph_A 88 --RLVLEWADSEVTVQS 102 (107)
T ss_dssp --BCEEEECCCCCCCCC
T ss_pred --EEEEEeCCCCCCCCC
Confidence 799999997655543
No 13
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1e-22 Score=137.03 Aligned_cols=88 Identities=23% Similarity=0.369 Sum_probs=78.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeE--------EEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYK--------EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM 123 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~--------~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l 123 (153)
+.++|||+|||+++++++|+++|++||.|. .|+++.++ .+|+++|||||+|.+.++|++|++.|||..|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDK---ETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCT---TTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeC---CCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 478999999999999999999999999998 68888775 5688999999999999999999999999999
Q ss_pred CCCCCCCccEEEEeecCCCCCCCC
Q 031746 124 DEDDPDSKFLRLQFSRNPGPRSVF 147 (153)
Q Consensus 124 ~~~~~~~r~l~V~~a~~~~~r~~~ 147 (153)
.+ +.|+|++++.+.++..+
T Consensus 91 ~g-----~~l~V~~a~~~~~~~~~ 109 (113)
T 2cpe_A 91 QG-----SKLKVSLARKKPPMNSG 109 (113)
T ss_dssp TT-----EECEEECSSCCCCSTTC
T ss_pred CC-----CEEEEEECCCCCCCCCC
Confidence 87 47999999977655543
No 14
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.89 E-value=4.2e-23 Score=139.13 Aligned_cols=81 Identities=15% Similarity=0.148 Sum_probs=75.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|.+++++.+. .+|+++|||||+|.+.++|++|++.|||..+.+ +.
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~---~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g-----r~ 77 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHP---RTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG-----NI 77 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECC---CCCceeeEEEEEECCHHHHHHHHHHhCCCEECC-----eE
Confidence 5899999999999999999999999999999999887 679999999999999999999999999999987 47
Q ss_pred EEEEeecCC
Q 031746 133 LRLQFSRNP 141 (153)
Q Consensus 133 l~V~~a~~~ 141 (153)
|+|+++...
T Consensus 78 i~V~~a~~~ 86 (110)
T 3s8s_A 78 IHAQLDIKG 86 (110)
T ss_dssp CEEEECSTT
T ss_pred EEEEECCCC
Confidence 999999754
No 15
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=1.5e-22 Score=133.14 Aligned_cols=89 Identities=22% Similarity=0.311 Sum_probs=79.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..+.++.+. .+++++|||||+|.+.++|++|++.|||..+.++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 78 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDS---LTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR----- 78 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCT---TTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSC-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC---CCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCc-----
Confidence 36899999999999999999999999999999998776 5688999999999999999999999999999874
Q ss_pred cEEEEeecCCCCCCCCC
Q 031746 132 FLRLQFSRNPGPRSVFG 148 (153)
Q Consensus 132 ~l~V~~a~~~~~r~~~~ 148 (153)
.|+|++++.+..+..++
T Consensus 79 ~l~V~~a~~~~~~~~~~ 95 (99)
T 1whw_A 79 MLHVLPSTIKKEASQSG 95 (99)
T ss_dssp EEEEEECCCCSTTCCCC
T ss_pred EEEEEEcCCCcccccCC
Confidence 79999999876655443
No 16
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.5e-22 Score=134.43 Aligned_cols=86 Identities=20% Similarity=0.307 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCC-CCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCC
Q 031746 51 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRG-GDPLILCFVDFENPACAATALSALQGYRMDEDDPD 129 (153)
Q Consensus 51 ~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~-g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~ 129 (153)
.+.++|||+|||+++++++|+++|++|| |..|+++.+. .+ |+++|||||+|.+.++|++|+ .|||..|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~---~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---- 83 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREP---SNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN---- 83 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCS---SCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT----
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCC---CCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC----
Confidence 3468999999999999999999999999 9999998776 44 889999999999999999999 999999977
Q ss_pred CccEEEEeecCCCCCCC
Q 031746 130 SKFLRLQFSRNPGPRSV 146 (153)
Q Consensus 130 ~r~l~V~~a~~~~~r~~ 146 (153)
+.|+|+++.++..+..
T Consensus 84 -~~l~V~~a~~~~~~~~ 99 (104)
T 1wi8_A 84 -KRIRVDVADQAQDKDS 99 (104)
T ss_dssp -EECEEEECCCCCCCCC
T ss_pred -cEEEEEEccCCCCCCC
Confidence 4799999997655543
No 17
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=5.7e-23 Score=134.34 Aligned_cols=86 Identities=13% Similarity=0.288 Sum_probs=78.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEE-EEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEV-RLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~-~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+++|||+|||+++++++|+++|++||.|..+ +++.++ .++.++|||||+|.+.++|++|++.|||..+.+ +
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 76 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDP---DTGNSKGYAFINFASFDASDAAIEAMNGQYLCN-----R 76 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCT---TTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcC---CCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC-----E
Confidence 6899999999999999999999999999999 888775 568899999999999999999999999999977 4
Q ss_pred cEEEEeecCCCCCCC
Q 031746 132 FLRLQFSRNPGPRSV 146 (153)
Q Consensus 132 ~l~V~~a~~~~~r~~ 146 (153)
.|+|+++.+++.+..
T Consensus 77 ~l~v~~a~~~~~~~~ 91 (96)
T 1x5t_A 77 PITVSYAFKKDSKGS 91 (96)
T ss_dssp ECEEEESCCCCCCCC
T ss_pred EEEEEEecccCCCCC
Confidence 799999997655543
No 18
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.89 E-value=1.5e-22 Score=134.72 Aligned_cols=89 Identities=13% Similarity=0.200 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|.+|+++.++ .+|+++|||||+|.+.++|.+|++.|||..+... .++
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~--~g~ 86 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDR---FTGMHKGCAFLTYCERESALKAQSALHEQKTLPG--MNR 86 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCS---SSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTT--CSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC---CCCCcceEEEEEECCHHHHHHHHHHhcCCcccCC--CCc
Confidence 36899999999999999999999999999999998876 5688999999999999999999999999987211 125
Q ss_pred cEEEEeecCCCCCC
Q 031746 132 FLRLQFSRNPGPRS 145 (153)
Q Consensus 132 ~l~V~~a~~~~~r~ 145 (153)
.|+|+++..+..+.
T Consensus 87 ~l~v~~a~~~~~~~ 100 (106)
T 2dgp_A 87 PIQVKPADSESRGG 100 (106)
T ss_dssp CCEEEECCCCSCCC
T ss_pred eEEEEECCcccccC
Confidence 79999999765444
No 19
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.89 E-value=2.4e-22 Score=139.84 Aligned_cols=87 Identities=18% Similarity=0.345 Sum_probs=79.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 51 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 51 ~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
.+.++|||+|||+++++++|+++|+.||.|.+|+++.++ .+|+++|||||+|.+.++|.+|++.|||..|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---- 112 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDR---ETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK---- 112 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEET---TTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC---CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe----
Confidence 346899999999999999999999999999999999886 5688999999999999999999999999999874
Q ss_pred ccEEEEeecCCCCCC
Q 031746 131 KFLRLQFSRNPGPRS 145 (153)
Q Consensus 131 r~l~V~~a~~~~~r~ 145 (153)
.|+|++++....+.
T Consensus 113 -~l~v~~a~~~~~~~ 126 (139)
T 1u6f_A 113 -RLKVALAASGHQRP 126 (139)
T ss_dssp -EEEEEESSCCCCCC
T ss_pred -EEEEEECCCCCCCC
Confidence 79999999765554
No 20
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.89 E-value=2.8e-22 Score=131.97 Aligned_cols=82 Identities=22% Similarity=0.364 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEE--------EEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 031746 50 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKE--------VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 121 (153)
Q Consensus 50 ~~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~--------~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~ 121 (153)
+.+.++|||+|||+++++++|+++|++||.|.. ++++.++ .+|+++|||||+|.+.++|++|++.|||.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~---~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDR---ETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECT---TTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecC---CCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344799999999999999999999999999999 9998876 57899999999999999999999999999
Q ss_pred ccCCCCCCCccEEEEeec
Q 031746 122 RMDEDDPDSKFLRLQFSR 139 (153)
Q Consensus 122 ~l~~~~~~~r~l~V~~a~ 139 (153)
.+.++ .|+|++|+
T Consensus 87 ~~~g~-----~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGN-----PIKVSFAT 99 (99)
T ss_dssp BSSSS-----BCEEEECC
T ss_pred EeCCc-----EEEEEecC
Confidence 99874 79999974
No 21
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=5.9e-22 Score=130.58 Aligned_cols=83 Identities=28% Similarity=0.526 Sum_probs=75.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|.+++++.+. +|+++|||||+|.+.++|.+|++.|||..+.++ .
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~----~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-----~ 87 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR----AGKPKGLAYVEYENESQASQAVMKMDGMTIKEN-----I 87 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT----TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSC-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC----CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCE-----E
Confidence 6899999999999999999999999999999998774 588999999999999999999999999999874 7
Q ss_pred EEEEeecCCCCC
Q 031746 133 LRLQFSRNPGPR 144 (153)
Q Consensus 133 l~V~~a~~~~~r 144 (153)
|+|+++++++.+
T Consensus 88 l~v~~a~~~~~~ 99 (100)
T 2do4_A 88 IKVAISNSGPSS 99 (100)
T ss_dssp EEEEECCCCSCC
T ss_pred EEEEECCCCCCC
Confidence 999999965443
No 22
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.89 E-value=1.4e-22 Score=130.17 Aligned_cols=82 Identities=22% Similarity=0.319 Sum_probs=74.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|.++.++.+. .+|+++|||||+|.+.++|++|++.|||..+.+ +
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 76 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDM---ATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG-----R 76 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC---CCCccceEEEEEECCHHHHHHHHHHcCCCEECC-----e
Confidence 36899999999999999999999999999999998876 568899999999999999999999999999987 4
Q ss_pred cEEEEeecCC
Q 031746 132 FLRLQFSRNP 141 (153)
Q Consensus 132 ~l~V~~a~~~ 141 (153)
.|+|+|++++
T Consensus 77 ~l~v~~a~~k 86 (87)
T 3bs9_A 77 QIRTNWATRK 86 (87)
T ss_dssp ECEEEEEC--
T ss_pred EEEEEecCCC
Confidence 7999999864
No 23
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=5.6e-22 Score=132.81 Aligned_cols=86 Identities=20% Similarity=0.367 Sum_probs=77.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhC------CCccCC
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ------GYRMDE 125 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~------g~~l~~ 125 (153)
+.++|||+|||+++++++|+++|++||.|..|+++.+. .++.++|||||+|.+.++|++|++.|| +..|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHP---DTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCS---SSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecC---CCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 36899999999999999999999999999999998876 568899999999999999999999999 999977
Q ss_pred CCCCCccEEEEeecCCCCCC
Q 031746 126 DDPDSKFLRLQFSRNPGPRS 145 (153)
Q Consensus 126 ~~~~~r~l~V~~a~~~~~r~ 145 (153)
+.|+|+|+.++..+.
T Consensus 91 -----~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 91 -----RQLKVDLAVTRDEAA 105 (111)
T ss_dssp -----CEEEEECCCCCCCCC
T ss_pred -----EEEEEEECCCCccCC
Confidence 479999998765444
No 24
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.88 E-value=1.5e-22 Score=138.72 Aligned_cols=83 Identities=20% Similarity=0.349 Sum_probs=76.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++|+++|+++|++||.|..|.++.+. .+++++|||||+|.+.++|++|++.|||..|.++ .
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-----~ 93 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDR---RTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ-----P 93 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCT---TTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS-----B
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC---CCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe-----E
Confidence 6899999999999999999999999999999998876 5688999999999999999999999999999874 6
Q ss_pred EEEEeecCCCC
Q 031746 133 LRLQFSRNPGP 143 (153)
Q Consensus 133 l~V~~a~~~~~ 143 (153)
|+|+|+...++
T Consensus 94 l~v~~a~~~~~ 104 (126)
T 3ex7_B 94 ISVDWCFVRGP 104 (126)
T ss_dssp CEEEESEESSS
T ss_pred EEEEEecCCCC
Confidence 99999986543
No 25
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=7.3e-22 Score=132.13 Aligned_cols=83 Identities=25% Similarity=0.480 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|++|++.||+..|.+ +
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 89 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR------RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG-----Y 89 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS------SSSSCCEEEEESCHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC------CCCCcEEEEEECCHHHHHHHHHHcCCCEECC-----e
Confidence 3689999999999999999999999999999988543 4478899999999999999999999999987 4
Q ss_pred cEEEEeecCCCCCC
Q 031746 132 FLRLQFSRNPGPRS 145 (153)
Q Consensus 132 ~l~V~~a~~~~~r~ 145 (153)
.|+|+|++...++.
T Consensus 90 ~l~V~~a~~~~~~~ 103 (109)
T 1x4a_A 90 RLRVEFPRSGRGTG 103 (109)
T ss_dssp ECEEECCCCCCCCC
T ss_pred EEEEEEcccCCCCC
Confidence 79999999764443
No 26
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=2.6e-22 Score=131.72 Aligned_cols=88 Identities=24% Similarity=0.320 Sum_probs=76.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|..+.+..+.....++.++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 79 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG-----HK 79 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC-----eE
Confidence 6899999999999999999999999999999998876211145889999999999999999999999999987 47
Q ss_pred EEEEeecCCCCCC
Q 031746 133 LRLQFSRNPGPRS 145 (153)
Q Consensus 133 l~V~~a~~~~~r~ 145 (153)
|+|++++...++.
T Consensus 80 l~V~~a~~~~~~~ 92 (98)
T 2cpf_A 80 LEVRISERATKPA 92 (98)
T ss_dssp CEEECSSCSSCCC
T ss_pred EEEEEccCCCCCC
Confidence 9999998754433
No 27
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.88 E-value=1.2e-21 Score=130.01 Aligned_cols=88 Identities=23% Similarity=0.324 Sum_probs=78.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|..|.++.+. +|+++|||||+|.+.++|++|++.|||..+.+. ..+.
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~----~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg--~~~~ 88 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP----DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPG--ASSS 88 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS----SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTT--CSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC----CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCC--CCcc
Confidence 6899999999999999999999999999999998875 488999999999999999999999999999873 1246
Q ss_pred EEEEeecCCCCCCC
Q 031746 133 LRLQFSRNPGPRSV 146 (153)
Q Consensus 133 l~V~~a~~~~~r~~ 146 (153)
|+|+|++.++.+..
T Consensus 89 l~V~~a~~~~~~~~ 102 (105)
T 2dnh_A 89 LVVKFADTDKESGP 102 (105)
T ss_dssp CEEEESCSSCCCSC
T ss_pred EEEEECccCcccCC
Confidence 99999997655543
No 28
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=6.3e-22 Score=131.10 Aligned_cols=85 Identities=25% Similarity=0.416 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..|+++.+. +.++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 83 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH-----TSNDPYCFVEFYEHRDAAAALAAMNGRKILG-----K 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC-----CSSCCEEEEEESSHHHHHHHHHHHTTEEETT-----E
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC-----CCCCCEEEEEECCHHHHHHHHHHhCCCCcCC-----C
Confidence 36899999999999999999999999999999998875 2357899999999999999999999999987 4
Q ss_pred cEEEEeecCCCCCCC
Q 031746 132 FLRLQFSRNPGPRSV 146 (153)
Q Consensus 132 ~l~V~~a~~~~~r~~ 146 (153)
.|+|+|++.+..+..
T Consensus 84 ~l~V~~a~~~~~~~~ 98 (103)
T 2cqi_A 84 EVKVNWATTPSSQKS 98 (103)
T ss_dssp EEEEEECCCTTCCCC
T ss_pred eEEEEECCCCccccc
Confidence 799999998655443
No 29
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.88 E-value=9.3e-22 Score=132.70 Aligned_cols=85 Identities=21% Similarity=0.327 Sum_probs=77.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..|+++.+. .++.++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 85 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDM---ATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG-----R 85 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT-----E
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC---CCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-----E
Confidence 36899999999999999999999999999999999876 568899999999999999999999999999987 4
Q ss_pred cEEEEeecCCCCC
Q 031746 132 FLRLQFSRNPGPR 144 (153)
Q Consensus 132 ~l~V~~a~~~~~r 144 (153)
.|+|+|++.++++
T Consensus 86 ~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 86 QIRTNWATRKPPA 98 (115)
T ss_dssp ECEEEESSCCCCC
T ss_pred EEEEEEccCCCCC
Confidence 7999999876443
No 30
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3e-22 Score=133.23 Aligned_cols=84 Identities=20% Similarity=0.345 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|.+|.++.+. .+|.++|||||+|.+.++|++|++.|||..+.++
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 93 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDR---RTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ----- 93 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecC---CCCceeeEEEEEECCHHHHHHHHHHhcCCEECCc-----
Confidence 36899999999999999999999999999999998876 5688999999999999999999999999999874
Q ss_pred cEEEEeecCCCC
Q 031746 132 FLRLQFSRNPGP 143 (153)
Q Consensus 132 ~l~V~~a~~~~~ 143 (153)
.|+|+|+.++++
T Consensus 94 ~l~V~~a~~~~~ 105 (106)
T 1p27_B 94 PISVDWCFVRGP 105 (106)
T ss_dssp BCEEEESEESSC
T ss_pred EEEEEeecCCCC
Confidence 799999987654
No 31
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.3e-21 Score=129.64 Aligned_cols=85 Identities=20% Similarity=0.270 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..|+++.+. +.++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 83 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE-----RGSKGFGFVTFENSADADRAREKLHGTVVEG-----R 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT-----TTTCCEEEEEESCHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-----CCCcEEEEEEECCHHHHHHHHHHhCCCEECC-----E
Confidence 36899999999999999999999999999999998775 2378899999999999999999999999987 4
Q ss_pred cEEEEeecCCCCCCC
Q 031746 132 FLRLQFSRNPGPRSV 146 (153)
Q Consensus 132 ~l~V~~a~~~~~r~~ 146 (153)
.|+|+++..+..+..
T Consensus 84 ~l~v~~a~~~~~~~~ 98 (103)
T 2cq3_A 84 KIEVNNATARVMTNS 98 (103)
T ss_dssp ECEEEECCSSCCCCC
T ss_pred EEEEEEcccCCCCCC
Confidence 799999997655443
No 32
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.88 E-value=3.4e-22 Score=138.16 Aligned_cols=85 Identities=26% Similarity=0.364 Sum_probs=77.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..|+++.++ .+|+++|||||+|.+.++|++|++.|||..|.++
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~---~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~----- 116 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ---QSRRSRGFAFVYFENVDDAKEAKERANGMELDGR----- 116 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCS---SSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC---CCCccceEEEEEECCHHHHHHHHHHhCCCEECCE-----
Confidence 36899999999999999999999999999999999876 5688999999999999999999999999999874
Q ss_pred cEEEEeecCCCCC
Q 031746 132 FLRLQFSRNPGPR 144 (153)
Q Consensus 132 ~l~V~~a~~~~~r 144 (153)
.|+|+|+.++.++
T Consensus 117 ~l~V~~a~~~~p~ 129 (129)
T 2kxn_B 117 RIRVDFSITKRPH 129 (129)
T ss_dssp CCEESCCSSSSCC
T ss_pred EEEEEEecCCCCC
Confidence 6999999976554
No 33
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=2.8e-22 Score=131.83 Aligned_cols=87 Identities=20% Similarity=0.366 Sum_probs=77.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeE-EEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYK-EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~-~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
+.++|||+|||+++++++|+++|++||.|. +++++.++ .+|+++|||||+|.+.++|++|++.|||..+.++. ..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-~~ 83 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNR---LTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT-PA 83 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECS---SSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS-SC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecC---CCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC-cc
Confidence 368999999999999999999999999999 99999886 57889999999999999999999999999998852 11
Q ss_pred ccEEEEeecCCC
Q 031746 131 KFLRLQFSRNPG 142 (153)
Q Consensus 131 r~l~V~~a~~~~ 142 (153)
+.|+|+|+++..
T Consensus 84 ~~l~v~~a~~~~ 95 (99)
T 2div_A 84 KRFKLNYATYSG 95 (99)
T ss_dssp EECCEEETTCCS
T ss_pred eeEEEeecCCCC
Confidence 229999998653
No 34
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.88 E-value=5.6e-22 Score=134.56 Aligned_cols=83 Identities=20% Similarity=0.386 Sum_probs=75.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..|.++.+. +|+++|||||+|.+.++|++|++.|||..+.++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~----~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~----- 76 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR----TSKSRGFAFITFENPADAKNAAKDMNGKSLHGK----- 76 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST----TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSS-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC----CCCcccEEEEEECCHHHHHHHHHHhCCCEECCE-----
Confidence 46899999999999999999999999999999998774 588999999999999999999999999999874
Q ss_pred cEEEEeecCCCC
Q 031746 132 FLRLQFSRNPGP 143 (153)
Q Consensus 132 ~l~V~~a~~~~~ 143 (153)
.|+|++++.+..
T Consensus 77 ~l~V~~a~~~~~ 88 (116)
T 2fy1_A 77 AIKVEQAKKPSF 88 (116)
T ss_dssp BCEEEECCCSSC
T ss_pred EEEEEECCCCCC
Confidence 799999987643
No 35
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=6.5e-22 Score=128.81 Aligned_cols=79 Identities=18% Similarity=0.284 Sum_probs=73.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|..+.++.++ .+++++|||||+|.+.++|++|++.|||..+.+ +.
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~~ 87 (94)
T 2e5h_A 16 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDK---DTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG-----RV 87 (94)
T ss_dssp TTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCS---SSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT-----EE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCC---CCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC-----cE
Confidence 6899999999999999999999999999999998876 568899999999999999999999999999987 47
Q ss_pred EEEEeec
Q 031746 133 LRLQFSR 139 (153)
Q Consensus 133 l~V~~a~ 139 (153)
|+|+|++
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999985
No 36
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=7.4e-22 Score=132.81 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=75.4
Q ss_pred CCeEEEcCCCCCCCHHHHH---HhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCC
Q 031746 53 SSTLYVEGLPADSTKREVA---HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 129 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~---~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~ 129 (153)
.++|||+|||+++++++|+ ++|++||.|.++.++.+.....++.++|||||+|.+.++|++|++.|||..|.+
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g---- 90 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG---- 90 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT----
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC----
Confidence 6899999999999999999 999999999999998776322245677999999999999999999999999987
Q ss_pred CccEEEEeecCCC
Q 031746 130 SKFLRLQFSRNPG 142 (153)
Q Consensus 130 ~r~l~V~~a~~~~ 142 (153)
+.|+|+|+.+++
T Consensus 91 -r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 -RTLKASLGTTKY 102 (111)
T ss_dssp -EEEEEESCCCCS
T ss_pred -EEEEEEeccccc
Confidence 579999999654
No 37
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.88 E-value=7.1e-23 Score=132.84 Aligned_cols=83 Identities=12% Similarity=0.135 Sum_probs=70.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCC--CeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G--~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
.+|||+|||+++++++|+++|++|| .|.+++++.++ .+|+++|||||+|.+.++|++|++.|||..+.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~---~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr----- 73 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENR---ANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ----- 73 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECT---TTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC-----
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecC---CCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE-----
Confidence 5799999999999999999999999 99999999886 6799999999999999999999999999999874
Q ss_pred cEEEEeecCCCCC
Q 031746 132 FLRLQFSRNPGPR 144 (153)
Q Consensus 132 ~l~V~~a~~~~~r 144 (153)
.|+|+++.++++.
T Consensus 74 ~i~V~~~~~~~~~ 86 (90)
T 3p5t_L 74 NPVVTPSNKLEHH 86 (90)
T ss_dssp CCEECCC------
T ss_pred EEEEEECCCCccc
Confidence 6999999976544
No 38
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.88 E-value=1.1e-21 Score=132.93 Aligned_cols=82 Identities=26% Similarity=0.492 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCC
Q 031746 50 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 129 (153)
Q Consensus 50 ~~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~ 129 (153)
..+.++|||+|||+++++++|+++|++||.|.+++++.++ .+|+++|||||+|.+.++|++|++.|||..+.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---- 109 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDK---QTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT---- 109 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCS---SSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT----
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC----
Confidence 3447899999999999999999999999999999998876 568899999999999999999999999999987
Q ss_pred CccEEEEeec
Q 031746 130 SKFLRLQFSR 139 (153)
Q Consensus 130 ~r~l~V~~a~ 139 (153)
+.|+|+|++
T Consensus 110 -~~l~V~~ak 118 (118)
T 2khc_A 110 -KRLKVQLKK 118 (118)
T ss_dssp -EECCEEEC-
T ss_pred -EEEEEEecC
Confidence 479999875
No 39
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.88 E-value=7.3e-22 Score=125.66 Aligned_cols=81 Identities=20% Similarity=0.352 Sum_probs=74.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccE
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 133 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l 133 (153)
.+|||+|||+++++++|+++|++||.|.++.++.+. .+|+++|||||+|.+.++|++|++.|||..+.+ +.|
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g-----~~l 73 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDM---QTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG-----RPL 73 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECT---TTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT-----EEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcC---CCCCccceEEEEECCHHHHHHHHHHhcCCeeCC-----cEE
Confidence 689999999999999999999999999999998876 568899999999999999999999999999977 479
Q ss_pred EEEeecCCC
Q 031746 134 RLQFSRNPG 142 (153)
Q Consensus 134 ~V~~a~~~~ 142 (153)
+|+++++++
T Consensus 74 ~v~~a~~~~ 82 (83)
T 3md1_A 74 RINWAAKLE 82 (83)
T ss_dssp EEEECCCCC
T ss_pred EEEecCcCC
Confidence 999998643
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=3.7e-22 Score=135.19 Aligned_cols=82 Identities=17% Similarity=0.308 Sum_probs=73.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
..+|||+|||+++++++|+++|++||.|.+|+++.++ +.++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-----~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g-----~~ 74 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-----NGSKGYGFVHFETQEAAERAIEKMNGMLLND-----RK 74 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-----TEEEEEEEEEESCHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-----CCCCceEEEEECCHHHHHHHHHHcCCCEECC-----EE
Confidence 4789999999999999999999999999999999875 4478999999999999999999999999987 47
Q ss_pred EEEEeecCCCCC
Q 031746 133 LRLQFSRNPGPR 144 (153)
Q Consensus 133 l~V~~a~~~~~r 144 (153)
|+|+++.....+
T Consensus 75 i~V~~a~~~~~~ 86 (115)
T 4f25_A 75 VFVGRFKSRKER 86 (115)
T ss_dssp CEEEESSCCCC-
T ss_pred EEEEECCCcccc
Confidence 999999865443
No 41
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.88 E-value=8.4e-22 Score=127.79 Aligned_cols=82 Identities=20% Similarity=0.299 Sum_probs=74.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..+++..+ +|+++|||||+|.+.++|++|++.|||..+.++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-----~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~----- 76 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-----NGKSKGCGVVKFESPEVAERACRMMNGMKLSGR----- 76 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-----SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB-----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-----CCCcceEEEEEECCHHHHHHHHHHhCCCEECCc-----
Confidence 3689999999999999999999999999999998864 478899999999999999999999999999874
Q ss_pred cEEEEeecCCCC
Q 031746 132 FLRLQFSRNPGP 143 (153)
Q Consensus 132 ~l~V~~a~~~~~ 143 (153)
.|+|++++++..
T Consensus 77 ~l~v~~a~~~~~ 88 (92)
T 2dgv_A 77 EIDVRIDRNASG 88 (92)
T ss_dssp CCCCEECSCCSS
T ss_pred EEEEEEcCCCCC
Confidence 699999986543
No 42
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=128.93 Aligned_cols=87 Identities=26% Similarity=0.382 Sum_probs=74.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|+.|+ .+.++.+. .+++++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 82 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDR---ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG-----N 82 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECS---SSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecC---CCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC-----e
Confidence 368999999999999999999999884 56666665 568899999999999999999999999999987 4
Q ss_pred cEEEEeecCCCCCCCCCC
Q 031746 132 FLRLQFSRNPGPRSVFGA 149 (153)
Q Consensus 132 ~l~V~~a~~~~~r~~~~~ 149 (153)
.|+|+|++++..+..+++
T Consensus 83 ~l~V~~a~~~~~~~~~~~ 100 (102)
T 2fc8_A 83 KVTLDWAKPKGEGGSGPS 100 (102)
T ss_dssp ECEEEECCCCCSSSCSCC
T ss_pred EEEEEEecCCCCCCCCCC
Confidence 799999997655554433
No 43
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=8.4e-22 Score=128.41 Aligned_cols=81 Identities=23% Similarity=0.317 Sum_probs=75.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..+.++.+. .+++++|||||+|.+.++|++|++.|||..+.+ +
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 85 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ---QSRRSRGFAFVYFENVDDAKEAKERANGMELDG-----R 85 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECS---SSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT-----E
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcC---CCCCcccEEEEEECCHHHHHHHHHHhCCCEECC-----E
Confidence 36899999999999999999999999999999998876 568899999999999999999999999999987 4
Q ss_pred cEEEEeecC
Q 031746 132 FLRLQFSRN 140 (153)
Q Consensus 132 ~l~V~~a~~ 140 (153)
.|+|+|++.
T Consensus 86 ~l~v~~a~~ 94 (95)
T 2cqc_A 86 RIRVSGPSS 94 (95)
T ss_dssp EEEEECCSC
T ss_pred EEEEEecCC
Confidence 799999874
No 44
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.87 E-value=4.3e-23 Score=134.44 Aligned_cols=83 Identities=19% Similarity=0.269 Sum_probs=73.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhC-CCccCCCCCCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ-GYRMDEDDPDS 130 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G-~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~-g~~l~~~~~~~ 130 (153)
+++|||+|||+++|+++|+++|++|| .|.+|+++.++ .+|+++|||||+|.+.++|.+|++.++ +..+.+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~---~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g----- 72 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNK---SSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG----- 72 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCS---SSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT-----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecC---CCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC-----
Confidence 37899999999999999999999999 79999998876 678999999999999999999998875 566766
Q ss_pred ccEEEEeecCCCC
Q 031746 131 KFLRLQFSRNPGP 143 (153)
Q Consensus 131 r~l~V~~a~~~~~ 143 (153)
++|+|+|+.+++.
T Consensus 73 r~i~V~~a~~~~~ 85 (91)
T 2lxi_A 73 QKVSMHYSDPKPK 85 (91)
T ss_dssp EEEEEECCCSCCC
T ss_pred EEEEEEEcCCCCC
Confidence 5799999986543
No 45
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.87 E-value=1.8e-22 Score=132.69 Aligned_cols=81 Identities=16% Similarity=0.345 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCC--eEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCc----cCC
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVG--YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR----MDE 125 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~--i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~----l~~ 125 (153)
...+|||+|||+++|+++|+++|++||. +.+|+++.++ .+|+++|||||+|.+.++|++|++.|||.. |++
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~---~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDK---QTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCS---SSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecC---CCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3689999999999999999999999996 5688888876 678999999999999999999999999974 655
Q ss_pred CCCCCccEEEEeecC
Q 031746 126 DDPDSKFLRLQFSRN 140 (153)
Q Consensus 126 ~~~~~r~l~V~~a~~ 140 (153)
|+|+|+||+.
T Consensus 85 -----r~i~V~~Aks 94 (95)
T 2lkz_A 85 -----KTIGVDFAKS 94 (95)
T ss_dssp -----EEEEEEECCC
T ss_pred -----EEEEEEEccC
Confidence 5799999984
No 46
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=3.1e-21 Score=129.85 Aligned_cols=83 Identities=17% Similarity=0.235 Sum_probs=75.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|.+|+++.++ +|+++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~----~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 85 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK----DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD-----RP 85 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT----TCSEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC----CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC-----CE
Confidence 6899999999999999999999999999999998875 48899999999999999999999999999987 47
Q ss_pred EEEEeecCCCCC
Q 031746 133 LRLQFSRNPGPR 144 (153)
Q Consensus 133 l~V~~a~~~~~r 144 (153)
|+|++++...++
T Consensus 86 l~v~~a~~~~~~ 97 (114)
T 2do0_A 86 MHVKMDERALPK 97 (114)
T ss_dssp CEEEECSCCCCC
T ss_pred EEEEEcccCCCC
Confidence 999999764443
No 47
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.87 E-value=6.6e-22 Score=129.52 Aligned_cols=82 Identities=21% Similarity=0.476 Sum_probs=76.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
+++|||+|||+++++++|+++|++||.|.+++++.++ .+|+++|||||+|.+.++|.+|++.|||..+.+ +.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~~ 73 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDP---QTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS-----RF 73 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCT---TTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCccceEEEEEECCHHHHHHHHHHhCCCeECC-----eE
Confidence 6899999999999999999999999999999998876 568899999999999999999999999999987 47
Q ss_pred EEEEeecCCC
Q 031746 133 LRLQFSRNPG 142 (153)
Q Consensus 133 l~V~~a~~~~ 142 (153)
|+|+++++++
T Consensus 74 l~V~~a~~~~ 83 (96)
T 2x1f_A 74 LKCGYSSNSD 83 (96)
T ss_dssp CEEEECSCSS
T ss_pred EEEEEcCCCC
Confidence 9999998653
No 48
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.87 E-value=5.6e-22 Score=126.75 Aligned_cols=80 Identities=20% Similarity=0.375 Sum_probs=74.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..+.++.+. .+++++|||||+|.+.++|.+|++.|||..+.+ +
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 77 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDY---ETEKHRGFAFVEFELAEDAAAAIDNMNESELFG-----R 77 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEET---TTTEECSEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECC---CCCccccEEEEEECCHHHHHHHHHHhCCCEECC-----c
Confidence 36899999999999999999999999999999998875 568889999999999999999999999999977 4
Q ss_pred cEEEEeec
Q 031746 132 FLRLQFSR 139 (153)
Q Consensus 132 ~l~V~~a~ 139 (153)
.|+|+|++
T Consensus 78 ~l~v~~ak 85 (85)
T 3mdf_A 78 TIRVNLAK 85 (85)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 79999985
No 49
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.87 E-value=4.7e-22 Score=127.77 Aligned_cols=84 Identities=23% Similarity=0.335 Sum_probs=75.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCC-CCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRG-GDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~-g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
.++|||+|||+++++++|+++|++||.|.++.++.+. .+ ++++|||||+|.+.++|++|++.|||..+.+ +
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 75 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER---MHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG-----Q 75 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEET---TEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCC---CCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC-----e
Confidence 5899999999999999999999999999999998775 22 3378999999999999999999999999987 4
Q ss_pred cEEEEeecCCCCC
Q 031746 132 FLRLQFSRNPGPR 144 (153)
Q Consensus 132 ~l~V~~a~~~~~r 144 (153)
.|+|+++.++.+|
T Consensus 76 ~l~v~~a~~~~~R 88 (88)
T 4a8x_A 76 EITATAVLAPWPR 88 (88)
T ss_dssp ECEEEEECCCCCC
T ss_pred EEEEEECCCCCCC
Confidence 7999999877654
No 50
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.87 E-value=5.6e-22 Score=132.82 Aligned_cols=84 Identities=20% Similarity=0.340 Sum_probs=76.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|..+.++.+. .+|+++|||||+|.+.++|.+|++.|||..+.+ +.
T Consensus 26 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~~ 97 (110)
T 1oo0_B 26 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDR---RTGFSKGYALVEYETHKQALAAKEALNGAEIMG-----QT 97 (110)
T ss_dssp BEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCT---TTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC---CCCCcceEEEEEECCHHHHHHHHHHcCCCEECC-----cE
Confidence 6899999999999999999999999999999998776 568899999999999999999999999999977 47
Q ss_pred EEEEeecCCCCC
Q 031746 133 LRLQFSRNPGPR 144 (153)
Q Consensus 133 l~V~~a~~~~~r 144 (153)
|+|+|+..++++
T Consensus 98 l~V~~a~~~~~~ 109 (110)
T 1oo0_B 98 IQVDWCFVKGPK 109 (110)
T ss_dssp CEEEESEESSCC
T ss_pred EEEEEcccCCCC
Confidence 999999876543
No 51
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.87 E-value=2.3e-21 Score=129.99 Aligned_cols=81 Identities=23% Similarity=0.447 Sum_probs=75.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|..+.++.++ .+|.++|||||+|.+.++|.+|++.|||..+.++ .
T Consensus 26 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~-----~ 97 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDS---ETGRSKGYGFITFSDSECAKKALEQLNGFELAGR-----P 97 (108)
T ss_dssp CEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEET---TTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS-----C
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC---CCCccceEEEEEECCHHHHHHHHHHcCCCEECCE-----E
Confidence 6899999999999999999999999999999999876 5688999999999999999999999999999874 6
Q ss_pred EEEEeecCC
Q 031746 133 LRLQFSRNP 141 (153)
Q Consensus 133 l~V~~a~~~ 141 (153)
|+|++++++
T Consensus 98 l~V~~a~~k 106 (108)
T 2jrs_A 98 MKVGHVTER 106 (108)
T ss_dssp CEEECSCSS
T ss_pred EEEEEcccC
Confidence 999999854
No 52
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=2.4e-21 Score=129.64 Aligned_cols=82 Identities=13% Similarity=0.229 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
..++|||+|||+++++++|+++|++||.|..+.++.+ |||||+|.+.++|++|++.|||..|.+.....+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3689999999999999999999999999999998754 499999999999999999999999987433335
Q ss_pred cEEEEeecCCCC
Q 031746 132 FLRLQFSRNPGP 143 (153)
Q Consensus 132 ~l~V~~a~~~~~ 143 (153)
.|+|+++.++++
T Consensus 84 ~i~V~~a~~~~~ 95 (108)
T 1x4c_A 84 YIRVKVDGPRSP 95 (108)
T ss_dssp EEEEEESSCCSC
T ss_pred EEEEEeCCCCCC
Confidence 799999997644
No 53
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=4.4e-22 Score=134.22 Aligned_cols=85 Identities=26% Similarity=0.441 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCe----EEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 51 DASSTLYVEGLPADSTKREVAHIFRPFVGY----KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 51 ~~~~~L~V~nLp~~~te~~l~~~F~~~G~i----~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
.+.++|||+|||+++|+++|+++|++||.| ..+++. +|+++|||||+|.+.++|++|++.|||..|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-------~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 95 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-------TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 95 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-------CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-------CCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 347899999999999999999999999998 444443 477889999999999999999999999999774
Q ss_pred CCCCccEEEEeecCCCCCCCC
Q 031746 127 DPDSKFLRLQFSRNPGPRSVF 147 (153)
Q Consensus 127 ~~~~r~l~V~~a~~~~~r~~~ 147 (153)
.|+|+|++.+..+..+
T Consensus 96 -----~l~v~~a~~~~~~~~~ 111 (115)
T 2cpx_A 96 -----ILVIEFGKNKKQRSSG 111 (115)
T ss_dssp -----BCEEEECCCCSCCCCC
T ss_pred -----EEEEEEccCCCCCCCC
Confidence 7999999976555543
No 54
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=9.4e-22 Score=130.68 Aligned_cols=86 Identities=17% Similarity=0.295 Sum_probs=77.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|..|.++.++ .++.++|||||+|.+.++|++|++. |+..|.+ +.
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g-----~~ 86 (105)
T 2dh8_A 16 IGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDK---TTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG-----RN 86 (105)
T ss_dssp SSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECS---SSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCCcceEEEEEECCHHHHHHHHHh-CCCeECC-----EE
Confidence 6899999999999999999999999999999999876 5688999999999999999999988 9999987 47
Q ss_pred EEEEeecCCCCCCCC
Q 031746 133 LRLQFSRNPGPRSVF 147 (153)
Q Consensus 133 l~V~~a~~~~~r~~~ 147 (153)
|+|+++.++..+..+
T Consensus 87 l~V~~a~~~~~~~~~ 101 (105)
T 2dh8_A 87 IDPKPCTPRGMQPSG 101 (105)
T ss_dssp EBCCCSCCSSCCTTC
T ss_pred EEEEEccCCCCCCCC
Confidence 999999876555443
No 55
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.87 E-value=2.1e-21 Score=137.69 Aligned_cols=84 Identities=23% Similarity=0.379 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++|+++|+++|++||.|..|.++.+. .+++++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~ 109 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK---MKKTACGFCFVEYYSRADAENAMRYINGTRLDD-----R 109 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC---CCCccceEEEEEECCHHHHHHHHHHhCCCEECC-----e
Confidence 46899999999999999999999999999999999886 568899999999999999999999999999977 4
Q ss_pred cEEEEeecCCCC
Q 031746 132 FLRLQFSRNPGP 143 (153)
Q Consensus 132 ~l~V~~a~~~~~ 143 (153)
.|+|+|++.+.+
T Consensus 110 ~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 110 IIRTDWDAGFKE 121 (156)
T ss_dssp ECEEEEESCCCT
T ss_pred EEEEEECCCCCC
Confidence 799999987543
No 56
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.6e-21 Score=128.22 Aligned_cols=85 Identities=20% Similarity=0.278 Sum_probs=76.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcC-CCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCc-cCCCCCC
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRP-FVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR-MDEDDPD 129 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~-~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~-l~~~~~~ 129 (153)
+.++|||+|||+++++++|+++|++ ||.|.+++++.+. +|+++|||||+|.+.++|.+|++.|||.. +.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~----~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~--- 80 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ----TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK--- 80 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT----TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS---
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC----CCCccceEEEEECCHHHHHHHHHHccCCcccCCE---
Confidence 3689999999999999999999999 9999999998774 57899999999999999999999999999 8774
Q ss_pred CccEEEEeecCCCCCC
Q 031746 130 SKFLRLQFSRNPGPRS 145 (153)
Q Consensus 130 ~r~l~V~~a~~~~~r~ 145 (153)
.|+|+++..+..+.
T Consensus 81 --~l~v~~a~~~~~~~ 94 (104)
T 2dhg_A 81 --PVRLSVAIPKASRV 94 (104)
T ss_dssp --CCCCCBCCCCCSCC
T ss_pred --eEEEEEccCCCcCC
Confidence 69999998654433
No 57
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=9.3e-22 Score=133.00 Aligned_cols=86 Identities=13% Similarity=0.180 Sum_probs=77.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|..|.++.++ .+|+++|||||+|.+.++|++|++. |+..|.+ +.
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g-----~~ 97 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDP---ASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG-----RV 97 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCT---TTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC---CCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC-----EE
Confidence 5899999999999999999999999999999999876 5688999999999999999999987 9999977 47
Q ss_pred EEEEeecCCCCCCCC
Q 031746 133 LRLQFSRNPGPRSVF 147 (153)
Q Consensus 133 l~V~~a~~~~~r~~~ 147 (153)
|+|+++.++..+..+
T Consensus 98 l~V~~a~~~~~~~~~ 112 (116)
T 1x4b_A 98 VEPKRAVAREESGSG 112 (116)
T ss_dssp EEEECCSSCCCCCCS
T ss_pred EEEEECCCCccCCCC
Confidence 999999976554433
No 58
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.86 E-value=9.9e-22 Score=135.83 Aligned_cols=83 Identities=19% Similarity=0.302 Sum_probs=75.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEE--EEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCC----ccCC
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKE--VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY----RMDE 125 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~--~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~----~l~~ 125 (153)
+.++|||+|||+++|+++|+++|++||.|.. |+++.++ .+|+++|||||+|.+. +|.+|++.|||. .+.+
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~---~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDK---QTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCS---SSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcC---CCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3689999999999999999999999999976 8998886 5789999999999999 999999999999 9977
Q ss_pred CCCCCccEEEEeecCCCC
Q 031746 126 DDPDSKFLRLQFSRNPGP 143 (153)
Q Consensus 126 ~~~~~r~l~V~~a~~~~~ 143 (153)
+ .|+|+++++..+
T Consensus 98 r-----~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 K-----TINVEFAKGSKR 110 (131)
T ss_dssp C-----CCCCEECCCSCC
T ss_pred E-----EEEEEECCCCCC
Confidence 4 699999986533
No 59
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.5e-21 Score=128.01 Aligned_cols=83 Identities=18% Similarity=0.226 Sum_probs=73.7
Q ss_pred CCCeEEEcCCCCCCCHHHHH----HhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 031746 52 ASSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 127 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~----~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~ 127 (153)
+.++|||+|||+++++++|+ ++|++||.|.+|+++.++ .+ +|||||+|.+.++|++|++.|||..+.+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~---~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~g-- 79 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHT---DY---QLKAVVQMENLQDAIGAVNSLHRYKIGS-- 79 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCC---ST---TCCEEEEESSHHHHHHHHHHHTTEEETT--
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCC---CC---CeEEEEEECCHHHHHHHHHHhCCCEECC--
Confidence 36899999999999999999 999999999999998775 22 6799999999999999999999999987
Q ss_pred CCCccEEEEeecCCCCCC
Q 031746 128 PDSKFLRLQFSRNPGPRS 145 (153)
Q Consensus 128 ~~~r~l~V~~a~~~~~r~ 145 (153)
+.|+|+++++.+..+
T Consensus 80 ---r~l~V~~a~~~~~~~ 94 (96)
T 2dgx_A 80 ---KKILVSLATGASGPS 94 (96)
T ss_dssp ---EEEEEEECCCSSCCC
T ss_pred ---eEEEEEEcCCCCCCC
Confidence 579999998654433
No 60
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.86 E-value=1.4e-21 Score=139.93 Aligned_cols=88 Identities=20% Similarity=0.324 Sum_probs=76.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..|.++.+. .+|.++|||||+|.+.++|.+|++.|||..|.+ +
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~ 142 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDR---RTGFSKGYALVEYETHKQALAAKEALNGAEIMG-----Q 142 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecC---CCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC-----E
Confidence 36899999999999999999999999999999999876 578999999999999999999999999999987 4
Q ss_pred cEEEEeecCCCCCCCC
Q 031746 132 FLRLQFSRNPGPRSVF 147 (153)
Q Consensus 132 ~l~V~~a~~~~~r~~~ 147 (153)
.|+|+|+...+++...
T Consensus 143 ~l~V~~a~~~~~~~~~ 158 (165)
T 1rk8_A 143 TIQVDWCFVKGPKRVK 158 (165)
T ss_dssp ECEEEESEECC-----
T ss_pred EEEEEEecCCCCCCCC
Confidence 7999999876555433
No 61
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4.3e-21 Score=124.19 Aligned_cols=81 Identities=21% Similarity=0.362 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|||..+.++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 70 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----------KNYGFVHIEDKTAAEDAIRNLHHYKLHGV----- 70 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----------TTEEEEEESSHHHHHHHHHHHTTCBCSSC-----
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHhcCCccCCc-----
Confidence 36899999999999999999999999999999886 24999999999999999999999999874
Q ss_pred cEEEEeecCCCCCCCCC
Q 031746 132 FLRLQFSRNPGPRSVFG 148 (153)
Q Consensus 132 ~l~V~~a~~~~~r~~~~ 148 (153)
.|+|++++.++++..++
T Consensus 71 ~l~v~~a~~~~~~~~~~ 87 (90)
T 2dnq_A 71 NINVEASKNKSKASSGP 87 (90)
T ss_dssp BCEEECSSCCCCCCSSC
T ss_pred EEEEEECCCCCCCCCCC
Confidence 69999999776555433
No 62
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2e-22 Score=135.93 Aligned_cols=83 Identities=18% Similarity=0.266 Sum_probs=75.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..|+++.++ .+|+++|||||+|.+.++|++|+ .|||..|.+ +
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-----~ 94 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDR---NSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG-----V 94 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSC---CSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecC---CCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC-----e
Confidence 35799999999999999999999999999999998876 56889999999999999999999 999999987 4
Q ss_pred cEEEEeecCCCC
Q 031746 132 FLRLQFSRNPGP 143 (153)
Q Consensus 132 ~l~V~~a~~~~~ 143 (153)
.|+|++++....
T Consensus 95 ~l~V~~a~~~~~ 106 (114)
T 2cq4_A 95 PIIVQASQAEKN 106 (114)
T ss_dssp EEEEEEHHHHHH
T ss_pred EEEEEecCCCcc
Confidence 799999986433
No 63
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=9.1e-21 Score=125.46 Aligned_cols=82 Identities=21% Similarity=0.297 Sum_probs=73.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|..|.++.++ .+|+++|||||+|.+.++|++|++ ++..|.+ +.
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g-----~~ 84 (103)
T 2cqg_A 15 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDL---KTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG-----RW 84 (103)
T ss_dssp CCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECS---SSCSEEEEEEEEESSHHHHHHHHH--SCEEETT-----EE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecC---CCCCccceEEEEECCHHHHHHHHH--cCCeeCC-----eE
Confidence 6899999999999999999999999999999999886 568999999999999999999997 4677766 57
Q ss_pred EEEEeecCCCCC
Q 031746 133 LRLQFSRNPGPR 144 (153)
Q Consensus 133 l~V~~a~~~~~r 144 (153)
|+|+++..+...
T Consensus 85 l~v~~a~~~~~~ 96 (103)
T 2cqg_A 85 CDCKLPNSKQSQ 96 (103)
T ss_dssp EEEECCCTTCCC
T ss_pred EEEEecCCCCcC
Confidence 999999875443
No 64
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.9e-21 Score=127.21 Aligned_cols=79 Identities=22% Similarity=0.327 Sum_probs=70.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++|+++|+++|++|| +++|+++.++ +|+++|||||+|.+.++|++|+ .+|+..|.++ .
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~----~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr-----~ 83 (102)
T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP----DGRVTGEADVEFATHEDAVAAM-AKDKANMQHR-----Y 83 (102)
T ss_dssp SCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS----SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSS-----C
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC----CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCc-----E
Confidence 68999999999999999999999999 4589888774 5889999999999999999999 5899999774 6
Q ss_pred EEEEeecCCC
Q 031746 133 LRLQFSRNPG 142 (153)
Q Consensus 133 l~V~~a~~~~ 142 (153)
|+|.++..+.
T Consensus 84 i~V~~~~~~~ 93 (102)
T 1wez_A 84 VELFLNSTAG 93 (102)
T ss_dssp CEEEEECCCC
T ss_pred EEEEECCCCC
Confidence 9999988654
No 65
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=7.7e-21 Score=128.44 Aligned_cols=80 Identities=19% Similarity=0.280 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..|+++.++ .+++++|||||+|.+.++|++|++.||+ .|.+ +
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g-----~ 86 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDR---QTGKSRGYGFVTMADRAAAERACKDPNP-IIDG-----R 86 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCS---SSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcC---CCCccceEEEEEECCHHHHHHHHHhCCC-cCCC-----E
Confidence 36899999999999999999999999999999998876 5688999999999999999999999998 7876 5
Q ss_pred cEEEEeecC
Q 031746 132 FLRLQFSRN 140 (153)
Q Consensus 132 ~l~V~~a~~ 140 (153)
.|+|+++..
T Consensus 87 ~l~V~~a~~ 95 (116)
T 2cqd_A 87 KANVNLAYL 95 (116)
T ss_dssp ECEEEESTT
T ss_pred EEEEEEccc
Confidence 799999965
No 66
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.6e-20 Score=125.36 Aligned_cols=86 Identities=17% Similarity=0.329 Sum_probs=76.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCC---
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP--- 128 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~--- 128 (153)
+.++|||+|||+++++++|+++|++||.|..++++.+. +|.++|||||+|.+.++|++|++.|||..+.+...
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~----~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS----SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS----SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC----CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 36899999999999999999999999999999998874 58899999999999999999999999999965421
Q ss_pred CCccEEEEeecCC
Q 031746 129 DSKFLRLQFSRNP 141 (153)
Q Consensus 129 ~~r~l~V~~a~~~ 141 (153)
.+++|+|.|+.++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 3468999999853
No 67
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.5e-21 Score=128.15 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=73.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|..+.++.++ .+|+++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~---~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-----~~ 86 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN---EKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS-----RK 86 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEEC---SSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEEC---CCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC-----eE
Confidence 5889999999999999999999999999877777765 568899999999999999999999999999987 47
Q ss_pred EEEEeecCC
Q 031746 133 LRLQFSRNP 141 (153)
Q Consensus 133 l~V~~a~~~ 141 (153)
|+|+++..+
T Consensus 87 l~V~~a~~~ 95 (98)
T 2cqp_A 87 VKLVLGSGP 95 (98)
T ss_dssp CEEEESSCS
T ss_pred EEEEEcCCC
Confidence 999999854
No 68
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=126.71 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=73.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|.++++..+. .|+++|||||+|.+.++|++|++.|||..+.+ +
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 85 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR----EGKPKSFGFVCFKHPESVSYAIALLNGIRLYG-----R 85 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT----TSCEEEEEEEEESSTHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC----CCCCceEEEEEECCHHHHHHHHHHhCCCEECC-----C
Confidence 36899999999999999999999999999999998875 38899999999999999999999999999987 4
Q ss_pred cEEEEeecC
Q 031746 132 FLRLQFSRN 140 (153)
Q Consensus 132 ~l~V~~a~~ 140 (153)
.|+|++++.
T Consensus 86 ~l~V~~a~~ 94 (95)
T 2ywk_A 86 PINVSGPSS 94 (95)
T ss_dssp ECEEECCCC
T ss_pred EEEEEEcCC
Confidence 799999874
No 69
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=6e-21 Score=125.93 Aligned_cols=81 Identities=19% Similarity=0.296 Sum_probs=70.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.| +++.+ .+++++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~----~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~~ 82 (101)
T 2fc9_A 15 SKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN----QNGKSKGYAFIEFASFEDAKEALNSCNKREIEG-----RA 82 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC----SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC----CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC-----eE
Confidence 6899999999999999999999999976 34443 357889999999999999999999999999987 47
Q ss_pred EEEEeecCCCCCC
Q 031746 133 LRLQFSRNPGPRS 145 (153)
Q Consensus 133 l~V~~a~~~~~r~ 145 (153)
|+|+|+++++.+.
T Consensus 83 l~v~~a~~~~~~~ 95 (101)
T 2fc9_A 83 IRLELQGPRGSPN 95 (101)
T ss_dssp EEEEECSSCCCCC
T ss_pred EEEEEcCCCCCCC
Confidence 9999999764433
No 70
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.86 E-value=4.7e-21 Score=135.84 Aligned_cols=86 Identities=21% Similarity=0.322 Sum_probs=78.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|..++++.+. .+|+++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 141 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR---YTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG-----RE 141 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCS---SCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS-----SE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCccceEEEEEECCHHHHHHHHHHhCCCEECC-----eE
Confidence 6899999999999999999999999999999998876 578999999999999999999999999999977 47
Q ss_pred EEEEeecCCCCCCC
Q 031746 133 LRLQFSRNPGPRSV 146 (153)
Q Consensus 133 l~V~~a~~~~~r~~ 146 (153)
|+|++++++.++..
T Consensus 142 l~v~~a~~~~~~~~ 155 (158)
T 2kn4_A 142 LRVQMARYGRPPDS 155 (158)
T ss_dssp EEEEEECCSSCCCC
T ss_pred EEEEECCCCCCCCC
Confidence 99999997655543
No 71
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.7e-20 Score=124.58 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=69.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhC--CCccCCCCCC
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ--GYRMDEDDPD 129 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~--g~~l~~~~~~ 129 (153)
++++|||+|||+++++++|+++|++||.|.++.++.+ +|||||+|.+.++|.+|++.|+ +..+.+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G---- 80 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---------KNQAFLELATEEAAITMVNYYSAVTPHLRN---- 80 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHHHSCCEETT----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---------CCEEEEEECCHHHHHHHHHHhccCCceECC----
Confidence 4789999999999999999999999999999988753 4699999999999999999874 667876
Q ss_pred CccEEEEeecCCCCCC
Q 031746 130 SKFLRLQFSRNPGPRS 145 (153)
Q Consensus 130 ~r~l~V~~a~~~~~r~ 145 (153)
++|+|+|++......
T Consensus 81 -r~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 81 -QPIYIQYSNHKELKT 95 (101)
T ss_dssp -EECEEEECSCSSCCC
T ss_pred -cEEEEEEcCcccCcC
Confidence 579999999765544
No 72
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.9e-22 Score=125.98 Aligned_cols=80 Identities=21% Similarity=0.402 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..+.++.++ .+|.++|||||+|.+.++|++|++.|||..+.++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 75 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDK---TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ----- 75 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCS---SSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE-----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC---CCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE-----
Confidence 36899999999999999999999999999999998876 5688999999999999999999999999999774
Q ss_pred cEEEEeec
Q 031746 132 FLRLQFSR 139 (153)
Q Consensus 132 ~l~V~~a~ 139 (153)
.|+|++++
T Consensus 76 ~~~~~~~~ 83 (85)
T 1x4e_A 76 MAKQSGPS 83 (85)
T ss_dssp SCCSSCCC
T ss_pred EEeecCCC
Confidence 57766544
No 73
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.85 E-value=6.6e-22 Score=130.80 Aligned_cols=81 Identities=20% Similarity=0.266 Sum_probs=74.9
Q ss_pred CCeEEEcCCCC------CCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 53 SSTLYVEGLPA------DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 53 ~~~L~V~nLp~------~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
.++|||+|||+ ++++++|+++|++||.|.+++++.++ .+|+++|||||+|.+.++|++|++.|||..+.+.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~---~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDE---ATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEET---TTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcC---CCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 58999999999 99999999999999999999999887 6789999999999999999999999999999872
Q ss_pred CCCCccEEEEeecC
Q 031746 127 DPDSKFLRLQFSRN 140 (153)
Q Consensus 127 ~~~~r~l~V~~a~~ 140 (153)
+.|+|+++.+
T Consensus 83 ----r~l~V~~a~~ 92 (100)
T 3ns6_A 83 ----HRLFLYTMKD 92 (100)
T ss_dssp ----CBCEEEESHH
T ss_pred ----eEEEEEECch
Confidence 3699999874
No 74
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.85 E-value=4.3e-21 Score=131.05 Aligned_cols=82 Identities=15% Similarity=0.299 Sum_probs=75.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|.+|+++.++ .+|.++|||||+|.+.++|++|+ .|||..|.+ +.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-----~~ 106 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDK---FSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG-----RT 106 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEEC---TTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC---CCCCcccEEEEEECCHHHHHHHH-hcCCCeECC-----eE
Confidence 5899999999999999999999999999999999876 56889999999999999999999 899999987 47
Q ss_pred EEEEeecCCCC
Q 031746 133 LRLQFSRNPGP 143 (153)
Q Consensus 133 l~V~~a~~~~~ 143 (153)
|+|++++...+
T Consensus 107 l~V~~a~~~~~ 117 (124)
T 2jwn_A 107 IKVLPKRTNMP 117 (124)
T ss_dssp CEEEESSCCCS
T ss_pred EEEEECCCCCC
Confidence 99999986433
No 75
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=129.23 Aligned_cols=83 Identities=20% Similarity=0.303 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCC
Q 031746 50 PDASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 129 (153)
Q Consensus 50 ~~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~ 129 (153)
....++|||+|||+++++++|+++|++|| |.+++++.+.. .+|+++|||||+|.+.++|.+|+ .|||..+.++
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~--~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~--- 88 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPS--NPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR--- 88 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTT--TTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB---
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCC--cCCccCeEEEEEECCHHHHHHHH-hcCCCEECCe---
Confidence 34479999999999999999999999999 99999887641 25889999999999999999999 9999999874
Q ss_pred CccEEEEeecCC
Q 031746 130 SKFLRLQFSRNP 141 (153)
Q Consensus 130 ~r~l~V~~a~~~ 141 (153)
.|+|+++++.
T Consensus 89 --~l~V~~a~~~ 98 (100)
T 2j76_E 89 --RIRVDVADQA 98 (100)
T ss_dssp --CCCCEECCCS
T ss_pred --EEEEEeccCC
Confidence 6999999854
No 76
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.85 E-value=4.3e-21 Score=123.58 Aligned_cols=80 Identities=18% Similarity=0.316 Sum_probs=74.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|.++++..+. .+++++|||||+|.+.++|++|+ .|||..+.+ +.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g-----~~ 76 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDK---FSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG-----RQ 76 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESC---SSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecC---CCCCcceEEEEEECCHHHHHHHH-hcCCCEECC-----cE
Confidence 5799999999999999999999999999999998876 56889999999999999999999 999999987 47
Q ss_pred EEEEeecCC
Q 031746 133 LRLQFSRNP 141 (153)
Q Consensus 133 l~V~~a~~~ 141 (153)
|+|++++++
T Consensus 77 l~V~~a~~~ 85 (89)
T 3ucg_A 77 IKVIPKRTN 85 (89)
T ss_dssp CEEEETTTT
T ss_pred EEEEEccCC
Confidence 999999864
No 77
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=123.81 Aligned_cols=82 Identities=24% Similarity=0.306 Sum_probs=72.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|..+++..+ +|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~---------kg~afV~f~~~~~a~~a~~~l~g~~~~g-----~~ 80 (99)
T 2cpj_A 15 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---------KGFGFIRLETRTLAEIAKVELDNMPLRG-----KQ 80 (99)
T ss_dssp TTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---------TTEEEEECSSSHHHHHHHHHHTTCCBTT-----BC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC---------CCEEEEEECCHHHHHHHHHHhCCCEeCC-----ce
Confidence 689999999999999999999999999999988743 3699999999999999999999999987 46
Q ss_pred EEEEeecCCCCCCCCC
Q 031746 133 LRLQFSRNPGPRSVFG 148 (153)
Q Consensus 133 l~V~~a~~~~~r~~~~ 148 (153)
|+|+|++++.....+.
T Consensus 81 l~v~~a~~~~~~~~g~ 96 (99)
T 2cpj_A 81 LRVRFACHSASLTSGP 96 (99)
T ss_dssp CEEEESSCCSCCCCCC
T ss_pred EEEEEcCCCCCCCCCC
Confidence 9999999765555443
No 78
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2e-20 Score=122.64 Aligned_cols=79 Identities=19% Similarity=0.401 Sum_probs=69.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++.|||..+.+ .++.
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~~~---~g~~ 84 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---------DSFAYIQYESLDAAQAACAKMRGFPLGG---PDRR 84 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---------SCCEEEEESSHHHHHHHHHHHTTCBCSS---SSCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---------CCEEEEEECCHHHHHHHHHHHCCCEeCC---CCcE
Confidence 689999999999999999999999999999988643 4699999999999999999999999982 0247
Q ss_pred EEEEeecCCCC
Q 031746 133 LRLQFSRNPGP 143 (153)
Q Consensus 133 l~V~~a~~~~~ 143 (153)
|+|+|++++++
T Consensus 85 l~V~~a~~~~~ 95 (97)
T 1why_A 85 LRVDFAKSGPS 95 (97)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEECCCCCC
Confidence 99999996544
No 79
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.85 E-value=2e-21 Score=135.21 Aligned_cols=86 Identities=21% Similarity=0.317 Sum_probs=77.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..|.++.++ .+++++|||||+|.+.++|++|++.|||..|.++
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~---~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~----- 117 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR---YTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR----- 117 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCS---SSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC---CCCccceEEEEEECCHHHHHHHHHHcCCCEECCE-----
Confidence 36899999999999999999999999999999998776 5688999999999999999999999999999874
Q ss_pred cEEEEeecCCCCCC
Q 031746 132 FLRLQFSRNPGPRS 145 (153)
Q Consensus 132 ~l~V~~a~~~~~r~ 145 (153)
.|+|+|++...++.
T Consensus 118 ~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 118 ELRVQMARYGRPPD 131 (135)
T ss_dssp CCEEEECCCCCCCT
T ss_pred EEEEEECCCCCCCc
Confidence 69999999754443
No 80
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.9e-21 Score=128.92 Aligned_cols=81 Identities=21% Similarity=0.306 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 51 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 51 ~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
.+.++|||+|||+++++++|+++|++||.|.+++++.++ +.++|||||+|.+.++|++|++.|||..+.+
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-----~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g----- 96 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE-----RGSKGFGFVTFENSADADRAREKLHGTVVEG----- 96 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT-----TBCTTEEEEECCCSHHHHHHHHHHTTCEETT-----
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC-----CCCceEEEEEECCHHHHHHHHHHcCCCEECC-----
Confidence 346899999999999999999999999999999998775 3478999999999999999999999999987
Q ss_pred ccEEEEeecCC
Q 031746 131 KFLRLQFSRNP 141 (153)
Q Consensus 131 r~l~V~~a~~~ 141 (153)
+.|+|++++.+
T Consensus 97 ~~l~V~~a~~~ 107 (109)
T 2err_A 97 RKIEVNNATAR 107 (109)
T ss_dssp EECEEEECCCS
T ss_pred EEEEEEECCCC
Confidence 47999999854
No 81
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=122.47 Aligned_cols=81 Identities=22% Similarity=0.231 Sum_probs=71.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..+.++. +||||+|.+.++|++|++.|||..+.+ +
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-----------~~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 72 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-----------DYAFVHMERAEDAVEAIRGLDNTEFQG-----K 72 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-----------SEEEEEESCHHHHHHHHHHHTTEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-----------CEEEEEECCHHHHHHHHHHhCCCeeCC-----c
Confidence 368999999999999999999999999999998862 299999999999999999999999987 4
Q ss_pred cEEEEeecCCCCCCCCC
Q 031746 132 FLRLQFSRNPGPRSVFG 148 (153)
Q Consensus 132 ~l~V~~a~~~~~r~~~~ 148 (153)
.|+|++++.+..+.++.
T Consensus 73 ~l~V~~a~~~~~~~~~~ 89 (92)
T 2dgt_A 73 RMHVQLSTSRLRTASGP 89 (92)
T ss_dssp EEEEEESSCCCSCCCCC
T ss_pred EEEEEEccCCCCCCCCC
Confidence 79999999765554443
No 82
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.85 E-value=1.1e-20 Score=125.85 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=73.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|.++.++.+. +|+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~----~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 98 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR----SGRSLGTADVHFERKADALKAMKQYNGVPLDG-----R 98 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT----TSCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC----CCCcceEEEEEECCHHHHHHHHHHhCCCEeCC-----c
Confidence 36899999999999999999999999999999998774 58899999999999999999999999999977 4
Q ss_pred cEEEEeec
Q 031746 132 FLRLQFSR 139 (153)
Q Consensus 132 ~l~V~~a~ 139 (153)
.|+|+++.
T Consensus 99 ~l~V~~a~ 106 (107)
T 3ulh_A 99 PMNIQLVT 106 (107)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEeC
Confidence 79999986
No 83
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.84 E-value=5.9e-21 Score=135.99 Aligned_cols=80 Identities=13% Similarity=0.172 Sum_probs=74.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCC--CeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G--~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
.++|||+|||+++|+++|+++|++|| .|.+|+++.++ .+|+++|||||+|.+.++|++|++.|||..|.+
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~---~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G----- 126 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENR---ANGQSKGYAEVVVASENSVHKLLELLPGKVLNG----- 126 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECT---TTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT-----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecC---CCCccceEEEEEECCHHHHHHHHHHcCCCEECC-----
Confidence 57999999999999999999999999 99999999887 679999999999999999999999999999987
Q ss_pred ccEEEEeecC
Q 031746 131 KFLRLQFSRN 140 (153)
Q Consensus 131 r~l~V~~a~~ 140 (153)
+.|+|+++.+
T Consensus 127 r~l~V~~a~~ 136 (156)
T 3n9u_C 127 EKVDVRPATR 136 (156)
T ss_dssp EECEEEECCH
T ss_pred eEeEEEEcCC
Confidence 5799999864
No 84
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.84 E-value=6.4e-21 Score=127.92 Aligned_cols=85 Identities=16% Similarity=0.214 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 51 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 51 ~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
.+.++|||+|||+++++++|+++|++||.|.+|+++.+. .+|.++|||||+|.+.++|++|++.+ +..+.+
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~---~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g----- 93 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP---LTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS----- 93 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCT---TTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECC---CCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC-----
Confidence 347899999999999999999999999999999998876 56889999999999999999999876 588876
Q ss_pred ccEEEEeecCCCCC
Q 031746 131 KFLRLQFSRNPGPR 144 (153)
Q Consensus 131 r~l~V~~a~~~~~r 144 (153)
+.|+|+++.....+
T Consensus 94 ~~l~V~~a~~~~~~ 107 (109)
T 2rs2_A 94 KTIDPKVAFPRRAQ 107 (109)
T ss_dssp EEEEEEECCCCCCC
T ss_pred EEEEEEEccCCCCC
Confidence 57999999865443
No 85
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.84 E-value=6.4e-20 Score=125.35 Aligned_cols=84 Identities=20% Similarity=0.283 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 51 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 51 ~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
.++++|||+|||+++++++|+++|++||.|..|++..+. +|+++|||||+|.+.++|.+|++.|||..+.+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~----~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----- 103 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR----SGRSLGTADVHFERRADALKAMKQYKGVPLDG----- 103 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS----SSSCCSEEEEEESSHHHHHHHHHHHTTEESSS-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC----CCCEeeEEEEEECCHHHHHHHHHHcCCCEECC-----
Confidence 347899999999999999999999999999999998774 57889999999999999999999999999987
Q ss_pred ccEEEEeecCCCC
Q 031746 131 KFLRLQFSRNPGP 143 (153)
Q Consensus 131 r~l~V~~a~~~~~ 143 (153)
+.|+|+++.....
T Consensus 104 ~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 104 RPMDIQLVASQID 116 (124)
T ss_dssp CEEEEEEECCTTC
T ss_pred cEEEEEEeCCCCC
Confidence 4799999987533
No 86
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=125.73 Aligned_cols=76 Identities=12% Similarity=0.147 Sum_probs=67.8
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCc--cCCCCC
Q 031746 52 ASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR--MDEDDP 128 (153)
Q Consensus 52 ~~~~L~V~nLp~-~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~--l~~~~~ 128 (153)
++++|||+|||+ ++|+++|+++|++||.|.+|.++.++ |||||+|++.++|.+|++.||+.. |.+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k---------g~aFVef~~~~~A~~Ai~~l~~~~~~~~G--- 81 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI---------NEAFIEMATTEDAQAAVDYYTTTPALVFG--- 81 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS---------SCEEEEESSHHHHHHHHHHHHHSCCEETT---
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC---------CEEEEEECCHHHHHHHHHHHcCCCceECC---
Confidence 478999999999 99999999999999999999987543 599999999999999999999754 766
Q ss_pred CCccEEEEeecCC
Q 031746 129 DSKFLRLQFSRNP 141 (153)
Q Consensus 129 ~~r~l~V~~a~~~ 141 (153)
++|+|+|++..
T Consensus 82 --r~l~V~~a~~~ 92 (102)
T 1x4d_A 82 --KPVRVHLSQKY 92 (102)
T ss_dssp --EECEEEEECCC
T ss_pred --cEEEEEECCCC
Confidence 57999999853
No 87
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.3e-20 Score=123.33 Aligned_cols=84 Identities=20% Similarity=0.311 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEE-EEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKE-VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~-~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
+.++|||+|||+++|+++|+++|++||.|.+ +.++.+ .+|+++|||||+|.+.++|++|++. |+..|.+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~----~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g----- 83 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD----FQGRSTGEAFVQFASQEIAEKALKK-HKERIGH----- 83 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC----SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC----CCCCcceEEEEEECCHHHHHHHHHh-CcchhCC-----
Confidence 3689999999999999999999999999987 777665 3588999999999999999999987 9999977
Q ss_pred ccEEEEeecCCCCCC
Q 031746 131 KFLRLQFSRNPGPRS 145 (153)
Q Consensus 131 r~l~V~~a~~~~~r~ 145 (153)
|.|+|.++.......
T Consensus 84 r~i~v~~~~~~~~~~ 98 (104)
T 1wg5_A 84 RYIEIFKSSRAEVRT 98 (104)
T ss_dssp SCCEEEEECTTTSCC
T ss_pred cEEEEEECCHHHHHH
Confidence 469999988655443
No 88
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.7e-21 Score=127.57 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCC--CccCCCCCC
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG--YRMDEDDPD 129 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g--~~l~~~~~~ 129 (153)
+.++|||+|||+++|+++|+++|++||.|.+|+++.+ ||||||+|.+.++|++|++.|++ ..|.+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G---- 81 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG---- 81 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHTTSCCEETT----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---------CCEEEEEECCHHHHHHHHHHhccCCceECC----
Confidence 3789999999999999999999999999999999854 36999999999999999998874 67866
Q ss_pred CccEEEEeecCCCCCC
Q 031746 130 SKFLRLQFSRNPGPRS 145 (153)
Q Consensus 130 ~r~l~V~~a~~~~~r~ 145 (153)
++|+|+|++......
T Consensus 82 -r~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 82 -QPIYIQFSNHKELKT 96 (105)
T ss_dssp -EECCBCCCSSSSCCC
T ss_pred -EEEEEEEcCCCCCCc
Confidence 579999998754443
No 89
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.84 E-value=2.5e-20 Score=124.92 Aligned_cols=82 Identities=18% Similarity=0.278 Sum_probs=71.3
Q ss_pred CCeEEEcCCCCC-CCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 53 SSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 53 ~~~L~V~nLp~~-~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
.++|||+|||++ +++++|+++|++||.|.+|.+ ++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----------~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 90 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----------HKGYAFVQYSNERHARAAVLGENGRVLAG-----Q 90 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----------ETTEEEEECSSSHHHHHHHHHHTTCEETT-----E
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----------eCCEEEEEECCHHHHHHHHHHcCCCEECC-----e
Confidence 689999999999 999999999999999999988 13599999999999999999999999987 4
Q ss_pred cEEEEeecCCCCCCCCCCC
Q 031746 132 FLRLQFSRNPGPRSVFGAR 150 (153)
Q Consensus 132 ~l~V~~a~~~~~r~~~~~~ 150 (153)
.|+|++++.+.+...+.++
T Consensus 91 ~l~V~~a~~~~~~~~~~~~ 109 (110)
T 1wf1_A 91 TLDINMAGEPKPDRSGPSS 109 (110)
T ss_dssp ECCEEESCCCCSCCCCCCC
T ss_pred EEEEEECCCCCCCCCCCCC
Confidence 7999999865554444333
No 90
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7e-21 Score=126.03 Aligned_cols=83 Identities=20% Similarity=0.365 Sum_probs=76.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|..+.++.+. .+|.++|||||+|.+.++|.+|++.|||..+.++ .
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-----~ 79 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDR---ETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR-----A 79 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEET---TTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS-----C
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCC---CCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc-----E
Confidence 5899999999999999999999999999999998876 5688999999999999999999999999999874 6
Q ss_pred EEEEeecCCCC
Q 031746 133 LRLQFSRNPGP 143 (153)
Q Consensus 133 l~V~~a~~~~~ 143 (153)
|+|+++..+..
T Consensus 80 l~v~~a~~~~~ 90 (104)
T 1p1t_A 80 LRVDNAASEKN 90 (104)
T ss_dssp BEEEETTCTTH
T ss_pred EEEEeCCCccc
Confidence 99999987543
No 91
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=122.83 Aligned_cols=78 Identities=28% Similarity=0.502 Sum_probs=69.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|. +.++.+ +++|||||+|.+.++|++|++.|||..+.++ .
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~-------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-----~ 85 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ-------GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD-----T 85 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTCCSSSS-----C
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC-------CCCcEEEEEECCHHHHHHHHHHhCCCEECCc-----E
Confidence 68999999999999999999999999996 666543 3567999999999999999999999999874 6
Q ss_pred EEEEeecCCCC
Q 031746 133 LRLQFSRNPGP 143 (153)
Q Consensus 133 l~V~~a~~~~~ 143 (153)
|+|++++++++
T Consensus 86 l~V~~a~~~~~ 96 (97)
T 2e5j_A 86 LRVALARQQRD 96 (97)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEEcCCCCC
Confidence 99999987544
No 92
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.84 E-value=8.8e-22 Score=129.95 Aligned_cols=84 Identities=18% Similarity=0.283 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|.. .++.+. .+|+++|||||+|.+.++|++|++ |||..+.+ +
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~---~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g-----~ 85 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDV---RTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG-----N 85 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEE---EEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT-----B
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecC---CCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC-----c
Confidence 3689999999999999999999999999877 444444 457889999999999999999998 99999987 4
Q ss_pred cEEEEeecCCCCCC
Q 031746 132 FLRLQFSRNPGPRS 145 (153)
Q Consensus 132 ~l~V~~a~~~~~r~ 145 (153)
.|+|++++++..+.
T Consensus 86 ~l~V~~a~~~~~~~ 99 (101)
T 1fj7_A 86 EIKLEKPKGRDGTR 99 (101)
T ss_dssp CCEEECCSCCCCSS
T ss_pred EEEEEEcCCCCCCC
Confidence 69999998755443
No 93
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=121.09 Aligned_cols=79 Identities=22% Similarity=0.343 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
..++|||+|||+++++++|+++|++| .|.+++++.+. +|+++|||||+|.+.++|.+|++ |||..|.+ +
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~----~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g-----r 77 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNA----HGNKTGYIFVDFSNEEEVKQALK-CNREYMGG-----R 77 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECT----TSCEEEEEEEECSSHHHHHHHHH-SCSEEETT-----E
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECC----CCCCceEEEEEECCHHHHHHHHH-hCCceeCC-----c
Confidence 36899999999999999999999999 99999998773 58899999999999999999999 99999987 4
Q ss_pred cEEEEeecCC
Q 031746 132 FLRLQFSRNP 141 (153)
Q Consensus 132 ~l~V~~a~~~ 141 (153)
.|+|.++...
T Consensus 78 ~i~v~~a~~~ 87 (91)
T 2dgw_A 78 YIEVFREKSG 87 (91)
T ss_dssp EEEEEEESSC
T ss_pred EEEEEECCcC
Confidence 7999999865
No 94
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.84 E-value=3.3e-21 Score=125.64 Aligned_cols=79 Identities=16% Similarity=0.192 Sum_probs=72.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|..+.++.++ .+|+++|||||+|.+.++|++|++.|||..|.+ +.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~---~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-----r~ 86 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN---EKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS-----RK 86 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEEC---TTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeC---CCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC-----cE
Confidence 5899999999999999999999999999888887775 568899999999999999999999999999987 47
Q ss_pred EEEEeec
Q 031746 133 LRLQFSR 139 (153)
Q Consensus 133 l~V~~a~ 139 (153)
|+|+++.
T Consensus 87 l~v~~a~ 93 (95)
T 2ek1_A 87 VKLSGPS 93 (95)
T ss_dssp CEEECCC
T ss_pred EEEEecc
Confidence 9999876
No 95
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.4e-21 Score=126.67 Aligned_cols=78 Identities=17% Similarity=0.238 Sum_probs=71.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++|+++|+++|++||.|.+|+++.+. . |.++|||||+|.+.++|.+|+. +||..+.++ .
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~---~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr-----~ 80 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL---H-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKET-----D 80 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCC---T-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTT-----T
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECC---C-CCCccEEEEEECCHHHHHHHHH-cCCCEECCE-----E
Confidence 5899999999999999999999999999999998876 4 8899999999999999999998 999999874 6
Q ss_pred EEEEeecC
Q 031746 133 LRLQFSRN 140 (153)
Q Consensus 133 l~V~~a~~ 140 (153)
|+|.++..
T Consensus 81 l~V~~~~~ 88 (103)
T 1s79_A 81 LLILFKDD 88 (103)
T ss_dssp CEEEEHHH
T ss_pred EEEEEchH
Confidence 99998753
No 96
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.1e-20 Score=123.92 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=68.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCc--cCCCCCCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR--MDEDDPDS 130 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~--l~~~~~~~ 130 (153)
+++|||+|||+++++++|+++|++||.|.++.++.+ ||||||+|.+.++|.+|++.||+.. +.+
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G----- 80 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---------KRQALVEFENIDSAKECVTFAADVPVYIAG----- 80 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHHHSCCBSSS-----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---------CCEEEEEECCHHHHHHHHHHhccCCceECC-----
Confidence 689999999999999999999999999999988743 4699999999999999999997654 665
Q ss_pred ccEEEEeecCCCCC
Q 031746 131 KFLRLQFSRNPGPR 144 (153)
Q Consensus 131 r~l~V~~a~~~~~r 144 (153)
++|+|+|++....+
T Consensus 81 r~l~V~~a~~~~~~ 94 (104)
T 1wex_A 81 QQAFFNYSTSKRIT 94 (104)
T ss_dssp SBCEEEECSSSSCC
T ss_pred EEEEEEEccCcccc
Confidence 57999999875443
No 97
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.84 E-value=1.8e-20 Score=120.37 Aligned_cols=78 Identities=18% Similarity=0.356 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..++++.++ .+|+++|||||+|.+.++|++|++ +++..+.+ +
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g-----~ 80 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDP---NTGRSRGFGFILFKDAASVEKVLD-QKEHRLDG-----R 80 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECT---TTCCEEEEEEEEESSTHHHHHHHH-SSCEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecC---CCCccccEEEEEECCHHHHHHHHH-hCCCEECC-----E
Confidence 36899999999999999999999999999999998876 568999999999999999999995 58888876 4
Q ss_pred cEEEEee
Q 031746 132 FLRLQFS 138 (153)
Q Consensus 132 ~l~V~~a 138 (153)
.|+|++|
T Consensus 81 ~i~v~~A 87 (87)
T 3s7r_A 81 VIDPKKA 87 (87)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 7999875
No 98
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=129.50 Aligned_cols=79 Identities=16% Similarity=0.290 Sum_probs=70.4
Q ss_pred CCeEEEcCCCCCCCHHHHH----HhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031746 53 SSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 128 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~----~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~ 128 (153)
+++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|..|++.|||..|.++
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~------~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr-- 100 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL------SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN-- 100 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC------CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS--
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc------CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC--
Confidence 6899999999999999876 6999999999887742 467899999999999999999999999999874
Q ss_pred CCccEEEEeecCCC
Q 031746 129 DSKFLRLQFSRNPG 142 (153)
Q Consensus 129 ~~r~l~V~~a~~~~ 142 (153)
+|+|+|++.+.
T Consensus 101 ---~l~V~~a~~~~ 111 (127)
T 2a3j_A 101 ---PLVITFSETPQ 111 (127)
T ss_dssp ---CCEEEECCCCC
T ss_pred ---EEEEEEccCcc
Confidence 69999998653
No 99
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.84 E-value=2.3e-20 Score=129.50 Aligned_cols=79 Identities=20% Similarity=0.369 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..++++.++ .+|+++|||||+|.+.++|++|++.|||..|.+ +
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 133 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDY---ETEKHRGFAFVEFELAEDAAAAIDNMNESELFG-----R 133 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCT---TTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT-----E
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecC---CCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC-----E
Confidence 36899999999999999999999999999999998876 568899999999999999999999999999987 4
Q ss_pred cEEEEee
Q 031746 132 FLRLQFS 138 (153)
Q Consensus 132 ~l~V~~a 138 (153)
.|+|+||
T Consensus 134 ~l~v~~A 140 (140)
T 2ku7_A 134 TIRVNLA 140 (140)
T ss_dssp EEEEEC-
T ss_pred EEEEEeC
Confidence 7999986
No 100
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.5e-20 Score=120.53 Aligned_cols=79 Identities=23% Similarity=0.276 Sum_probs=70.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|.+++++. +||||+|.+.++|++|++.|||..+.+ +.
T Consensus 9 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-----------~~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 72 (90)
T 2dnp_A 9 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-----------DYAFVHMEKEADAKAAIAQLNGKEVKG-----KR 72 (90)
T ss_dssp SCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-----------SCEEEEESCHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-----------CEEEEEECCHHHHHHHHHHhCCCEECC-----cE
Confidence 68999999999999999999999999999998862 289999999999999999999999987 47
Q ss_pred EEEEeecCCCCCCCC
Q 031746 133 LRLQFSRNPGPRSVF 147 (153)
Q Consensus 133 l~V~~a~~~~~r~~~ 147 (153)
|+|+++++..+++++
T Consensus 73 l~v~~a~~~~~~~~~ 87 (90)
T 2dnp_A 73 INVELSTKGQKKSGP 87 (90)
T ss_dssp CEEEESCCCCCCCSC
T ss_pred EEEEECCCCCCCCCC
Confidence 999999976555543
No 101
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-20 Score=129.21 Aligned_cols=81 Identities=21% Similarity=0.320 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 51 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 51 ~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
.+.++|||+|||+++|+++|+++|++||.|..+.++.+. .+|+++|||||+|.+.++|++|++ |||..|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~---~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr---- 94 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYG---PNGKATGEGFVEFRNEADYKAALC-RHKQYMGNR---- 94 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEEC---TTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS----
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEEC---CCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCc----
Confidence 346899999999999999999999999999875555554 568999999999999999999998 999999874
Q ss_pred ccEEEEeecC
Q 031746 131 KFLRLQFSRN 140 (153)
Q Consensus 131 r~l~V~~a~~ 140 (153)
.|+|.++..
T Consensus 95 -~i~V~~a~~ 103 (124)
T 1wel_A 95 -FIQVHPITK 103 (124)
T ss_dssp -CBEEEEECH
T ss_pred -EEEEEECCH
Confidence 699999864
No 102
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.83 E-value=4.9e-21 Score=129.26 Aligned_cols=79 Identities=14% Similarity=0.171 Sum_probs=68.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G-~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
.++|||+|||+++++++|+++|++|| .|..+.+... +++|||||+|.+.++|++|++.|||..+.+ +
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~-------~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G-----r 95 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR-------DFDGTGALEFPSEEILVEALERLNNIEFRG-----S 95 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC-------SSSCCEEEEESSHHHHHHHHHHTTTEEETT-----E
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC-------CCCCEEEEEECCHHHHHHHHHHcCCCEECC-----e
Confidence 68999999999999999999999999 8998887532 356899999999999999999999999987 5
Q ss_pred cEEEEeecCCCC
Q 031746 132 FLRLQFSRNPGP 143 (153)
Q Consensus 132 ~l~V~~a~~~~~ 143 (153)
.|+|+++..+++
T Consensus 96 ~i~V~~a~~~p~ 107 (111)
T 2jvr_A 96 VITVERDDNPPP 107 (111)
T ss_dssp EEEEEESCC---
T ss_pred EEEEEECCCCCC
Confidence 799999986644
No 103
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6e-20 Score=125.24 Aligned_cols=79 Identities=19% Similarity=0.260 Sum_probs=70.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCC--CccCCCCCCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG--YRMDEDDPDS 130 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g--~~l~~~~~~~ 130 (153)
+++|||+|||+++++++|+++|++||.|.+|+++.+ +|||||+|++.++|.+|++.|++ ..|.+
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G----- 96 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG----- 96 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---------GTEEEEECSCHHHHHHHHHHHHHHCCCBTT-----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---------CCEEEEEECCHHHHHHHHHHhccCCceECC-----
Confidence 689999999999999999999999999999998864 36999999999999999999984 67766
Q ss_pred ccEEEEeecCCCCCC
Q 031746 131 KFLRLQFSRNPGPRS 145 (153)
Q Consensus 131 r~l~V~~a~~~~~r~ 145 (153)
++|+|+|++......
T Consensus 97 r~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 97 QPIYIQFSNHKELKT 111 (119)
T ss_dssp BCCEEEECSSSSCCC
T ss_pred eEEEEEEccCCCCCc
Confidence 579999998765544
No 104
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-20 Score=125.34 Aligned_cols=82 Identities=15% Similarity=0.197 Sum_probs=73.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCC-eEEEEEe-ecCCccCCCCcceEEEEEeCCHHHHHHHHHHhC--CCccCCCCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVG-YKEVRLV-IKESKLRGGDPLILCFVDFENPACAATALSALQ--GYRMDEDDP 128 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~-i~~~~~~-~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~--g~~l~~~~~ 128 (153)
.++|||+|||+++++++|+++|++||. |.++.++ .++ .+|+++|||||+|.+.++|.+|++.|| +..+.+
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g--- 81 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA---DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--- 81 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSC---TTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT---
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCC---CCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC---
Confidence 689999999999999999999999998 9999887 444 567899999999999999999999996 588877
Q ss_pred CCccEEEEeecCCC
Q 031746 129 DSKFLRLQFSRNPG 142 (153)
Q Consensus 129 ~~r~l~V~~a~~~~ 142 (153)
+.|+|+|+++..
T Consensus 82 --~~l~V~~a~~~~ 93 (109)
T 2dis_A 82 --HQIAVDWAEPEI 93 (109)
T ss_dssp --BCCEEEESCSSC
T ss_pred --CeEEEEEcCCCC
Confidence 469999998653
No 105
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-19 Score=119.36 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=68.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCC--CCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCC
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPF--VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 129 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~--G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~ 129 (153)
+.++|||+|||+++++++|+++|++| |.|..+.+. +|||||+|.+.++|++|++.|||..|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g---- 78 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----------RDYAFVHFSNREDAVEAMKALNGKVLDG---- 78 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHSSEEETT----
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----------CCeEEEEeCCHHHHHHHHHHhCCCEeCC----
Confidence 36899999999999999999999999 999888764 2499999999999999999999999987
Q ss_pred CccEEEEeecCCCC
Q 031746 130 SKFLRLQFSRNPGP 143 (153)
Q Consensus 130 ~r~l~V~~a~~~~~ 143 (153)
+.|+|+|+++...
T Consensus 79 -~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 79 -SPIEVTLAKPVDK 91 (99)
T ss_dssp -EEEEEECCCCCCC
T ss_pred -cEEEEEECCCCCC
Confidence 4799999997544
No 106
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.83 E-value=9.2e-21 Score=118.49 Aligned_cols=75 Identities=17% Similarity=0.317 Sum_probs=68.8
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccEE
Q 031746 55 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 134 (153)
Q Consensus 55 ~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~ 134 (153)
+|||+|||+++++++|+++|++||.|.++.++.++ .+|+++|||||+|.+.++|++|++ |||..+.++ .|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~-----~l~ 71 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDK---TTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNK-----MVE 71 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCS---SSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSC-----CCE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecC---CCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCE-----EEE
Confidence 59999999999999999999999999999988776 568899999999999999999996 999999874 699
Q ss_pred EEee
Q 031746 135 LQFS 138 (153)
Q Consensus 135 V~~a 138 (153)
|++|
T Consensus 72 v~~A 75 (75)
T 2mss_A 72 CKKA 75 (75)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9875
No 107
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-22 Score=135.82 Aligned_cols=85 Identities=21% Similarity=0.343 Sum_probs=76.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEE--------EEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKE--------VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 124 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~--------~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~ 124 (153)
.++|||+|||+++++++|+++|++||.|.. ++++.++ .+++++|||||+|.+.++|.+|++.|||..+.
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDR---ETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 689999999999999999999999999998 8887775 56889999999999999999999999999998
Q ss_pred CCCCCCccEEEEeecCCCCCC
Q 031746 125 EDDPDSKFLRLQFSRNPGPRS 145 (153)
Q Consensus 125 ~~~~~~r~l~V~~a~~~~~r~ 145 (153)
++ .|+|+++++++.+.
T Consensus 84 g~-----~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 84 GN-----PIKVSFATRRADFN 99 (116)
Confidence 74 69999998765544
No 108
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.83 E-value=2.5e-20 Score=123.38 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=67.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCc--cCCCCCCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR--MDEDDPDS 130 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~--l~~~~~~~ 130 (153)
+++|||+|||+++|+++|+++|++||.|.++.++.. ||||||+|++.++|.+|++.||+.. +.+
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~---------kg~AFVef~~~~~A~~Av~~ln~~~~~i~G----- 86 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK---------KRQALVEFEDVLGACNAVNYAADNQIYIAG----- 86 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHHHSCEEETT-----
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC---------CCEEEEEECCHHHHHHHHHHhcCCCceeCC-----
Confidence 789999999999999999999999999999988743 3699999999999999999999986 545
Q ss_pred ccEEEEeecCC
Q 031746 131 KFLRLQFSRNP 141 (153)
Q Consensus 131 r~l~V~~a~~~ 141 (153)
++|+|+||+.+
T Consensus 87 r~i~V~~S~~k 97 (100)
T 3r27_A 87 HPAFVNYSTSQ 97 (100)
T ss_dssp EEEEEEECSCS
T ss_pred cEEEEEecccc
Confidence 57999999854
No 109
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=124.74 Aligned_cols=79 Identities=22% Similarity=0.385 Sum_probs=71.5
Q ss_pred CCeEEEcCCCCCC------CHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 53 SSTLYVEGLPADS------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 53 ~~~L~V~nLp~~~------te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
.++|||+|||+.+ ++++|+++|++||.|.++.+.. .+|+++|||||+|.+.++|.+|++.|||..|.++
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~-----~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE-----EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC-----BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC-----CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 6899999999999 7899999999999999998872 3588999999999999999999999999999874
Q ss_pred CCCCccEEEEeecC
Q 031746 127 DPDSKFLRLQFSRN 140 (153)
Q Consensus 127 ~~~~r~l~V~~a~~ 140 (153)
+ .|+|+++..
T Consensus 90 ~----~l~V~~a~~ 99 (105)
T 2nlw_A 90 H----TFRVNLFTD 99 (105)
T ss_dssp C----EEEEECSCC
T ss_pred c----eEEEEEcch
Confidence 2 699999875
No 110
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=123.67 Aligned_cols=79 Identities=27% Similarity=0.385 Sum_probs=70.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccE
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 133 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l 133 (153)
++|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++|++.|||..+.++ .|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-----~l 67 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--------PPGFAFVEFEDPRDAEDAVRGLDGKVICGS-----RV 67 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--------SSSEEEEECSSHHHHHHHHHHHHHSCSSSC-----CC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--------CCCEEEEEECCHHHHHHHHHHHCCCeECCc-----EE
Confidence 47999999999999999999999999999998755 456999999999999999999999999875 69
Q ss_pred EEEeecCCCCCC
Q 031746 134 RLQFSRNPGPRS 145 (153)
Q Consensus 134 ~V~~a~~~~~r~ 145 (153)
+|++++.++.+.
T Consensus 68 ~V~~a~~~~~~~ 79 (101)
T 2hvz_A 68 RVELSTGMPRRS 79 (101)
T ss_dssp EEEESSSCCCSS
T ss_pred EEEEccCCCCcc
Confidence 999998765433
No 111
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.83 E-value=3.1e-20 Score=124.51 Aligned_cols=77 Identities=31% Similarity=0.570 Sum_probs=69.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..+.+. +|||||+|.+.++|++|++.|||..+.+ +
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----------kg~afV~f~~~~~A~~Ai~~l~g~~~~g-----~ 93 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----------NGFAFVEFEEAESAAKAIEEVHGKSFAN-----Q 93 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----------TTEEEEECSSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHcCCCEECC-----e
Confidence 36899999999999999999999999999999887 2599999999999999999999999977 4
Q ss_pred cEEEEeecCCCCC
Q 031746 132 FLRLQFSRNPGPR 144 (153)
Q Consensus 132 ~l~V~~a~~~~~r 144 (153)
.|+|+|++.+++|
T Consensus 94 ~l~V~~a~~~~~r 106 (108)
T 2jvo_A 94 PLEVVYSKLPAKR 106 (108)
T ss_dssp ECEEESCSCCC--
T ss_pred EEEEEEecCCCCC
Confidence 7999999976554
No 112
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.83 E-value=3.4e-21 Score=124.48 Aligned_cols=80 Identities=19% Similarity=0.304 Sum_probs=71.2
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccE
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 133 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l 133 (153)
++|||+|||+++++++|+++|++||.|.++.+..+. .+|+++|||||+|.+.+ |.+|+..|||..+.++ .|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~-----~l 72 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDR---ETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGR-----TI 72 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCS---SSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSS-----SC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcC---CCCCcceEEEEEECCHH-HHHHHHHhCCCEECCe-----EE
Confidence 589999999999999999999999999999998876 56889999999999999 9999999999999874 69
Q ss_pred EEEeecCCC
Q 031746 134 RLQFSRNPG 142 (153)
Q Consensus 134 ~V~~a~~~~ 142 (153)
+|++|.++.
T Consensus 73 ~V~~a~~~~ 81 (90)
T 2ki2_A 73 RVTEANPKK 81 (90)
T ss_dssp SEEEC----
T ss_pred EEEEcCCCC
Confidence 999998643
No 113
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.83 E-value=2.7e-20 Score=126.60 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCC---eEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVG---YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 128 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~---i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~ 128 (153)
+.++|||+|||+++|+++|+++|++||. |..|+++.++ . |+++|||||+|.+.++|++|++ ||+..|.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~---~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g--- 87 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTR---E-GRQSGEAFVELESEDDVKLALK-KDRESMGH--- 87 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECS---S-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETT---
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECC---C-CCCCeEEEEEECCHHHHHHHHh-cCCCeECC---
Confidence 3689999999999999999999999999 8899998875 3 8899999999999999999998 99999977
Q ss_pred CCccEEEEeecC
Q 031746 129 DSKFLRLQFSRN 140 (153)
Q Consensus 129 ~~r~l~V~~a~~ 140 (153)
|.|+|.++..
T Consensus 88 --r~i~V~~a~~ 97 (118)
T 2db1_A 88 --RYIEVFKSHR 97 (118)
T ss_dssp --EEEEEEEECH
T ss_pred --eEEEEEECCH
Confidence 5799999853
No 114
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.82 E-value=6.1e-20 Score=123.71 Aligned_cols=80 Identities=20% Similarity=0.362 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 51 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 51 ~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
.++++|||+|||+++++++|+++|++||.|..+.++.+ +.++|||||+|.+.++|.+|++.|||..+.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---- 75 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT------PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNR---- 75 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS------TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSC----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC------CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe----
Confidence 34789999999999999999999999999999998754 34578999999999999999999999999874
Q ss_pred ccEEEEeecCC
Q 031746 131 KFLRLQFSRNP 141 (153)
Q Consensus 131 r~l~V~~a~~~ 141 (153)
.|+|+|+.++
T Consensus 76 -~l~v~~a~~~ 85 (115)
T 3lqv_A 76 -YLVVLYYNAN 85 (115)
T ss_dssp -BCEEEECCHH
T ss_pred -EEEEEEecCC
Confidence 7999999753
No 115
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.82 E-value=7.3e-20 Score=120.33 Aligned_cols=75 Identities=23% Similarity=0.367 Sum_probs=68.1
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCC
Q 031746 51 DASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 129 (153)
Q Consensus 51 ~~~~~L~V~nLp~-~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~ 129 (153)
.+.++|||+|||+ ++++++|+++|++||.|.++++. +|||||+|.+.++|.+|++.|||..+.+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~Ai~~l~g~~~~g---- 84 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIEXESQEMNFG---- 84 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHTTSEETT----
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCEECC----
Confidence 3479999999998 99999999999999999999883 3599999999999999999999999987
Q ss_pred CccEEEEeecCC
Q 031746 130 SKFLRLQFSRNP 141 (153)
Q Consensus 130 ~r~l~V~~a~~~ 141 (153)
+.|+|++++.+
T Consensus 85 -~~l~V~~a~~~ 95 (97)
T 2xnq_A 85 -KKLILEVSSSN 95 (97)
T ss_dssp -EECEEEECCCC
T ss_pred -EEEEEEecCCC
Confidence 47999999854
No 116
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.7e-20 Score=119.88 Aligned_cols=82 Identities=21% Similarity=0.288 Sum_probs=69.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCC-eEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCC-CccCCCCCCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVG-YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG-YRMDEDDPDS 130 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~-i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g-~~l~~~~~~~ 130 (153)
.++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| ..+.+
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g----- 72 (93)
T 2cqh_A 8 MNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----------KSGYAFVDYPDQNWAIRAIETLSGKVELHG----- 72 (93)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----------ETTEEEECCSCHHHHHHHHHHHTTTCEETT-----
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----------CCCEEEEEECCHHHHHHHHHHccCCeeECC-----
Confidence 689999999999999999999999999 5555442 235999999999999999999999 99977
Q ss_pred ccEEEEeecCCCCCCCCCC
Q 031746 131 KFLRLQFSRNPGPRSVFGA 149 (153)
Q Consensus 131 r~l~V~~a~~~~~r~~~~~ 149 (153)
+.|+|+|++++..+..+.+
T Consensus 73 ~~l~v~~a~~~~~~~~~~~ 91 (93)
T 2cqh_A 73 KIMEVDYSVSKKLRSSGPS 91 (93)
T ss_dssp EECEEEECCCCCCCCCSCC
T ss_pred EEEEEEEccCccccCCCCC
Confidence 4799999997766554433
No 117
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.6e-20 Score=122.33 Aligned_cols=77 Identities=21% Similarity=0.393 Sum_probs=70.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|..|+++.+ +|||||+|.+.++|.+|++.|||..|.+ +.
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---------~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 90 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---------KGYSFVRFSTHESAAHAIVSVNGTTIEG-----HV 90 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---------CCEEEEEECCHHHHHHHHHHcCCCEECC-----cE
Confidence 689999999999999999999999999999998764 3599999999999999999999999987 47
Q ss_pred EEEEeecCCCC
Q 031746 133 LRLQFSRNPGP 143 (153)
Q Consensus 133 l~V~~a~~~~~ 143 (153)
|+|+|++..+.
T Consensus 91 l~v~~a~~~~~ 101 (109)
T 1x4g_A 91 VKCYWGKESPD 101 (109)
T ss_dssp CEEECCCCCCS
T ss_pred EEEEecCCCCC
Confidence 99999997544
No 118
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-20 Score=118.00 Aligned_cols=76 Identities=17% Similarity=0.248 Sum_probs=69.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccE
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 133 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l 133 (153)
++|||+|||+++++++|+++|++||.|.++.+..++ .+|+++|||||+|.+.++|++|++.++ ..+.++ .|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~-----~l 71 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP---LTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSK-----TI 71 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCC---CSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSC-----CC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCC---CCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCE-----EE
Confidence 479999999999999999999999999999998876 568899999999999999999999999 888774 69
Q ss_pred EEEee
Q 031746 134 RLQFS 138 (153)
Q Consensus 134 ~V~~a 138 (153)
+|+++
T Consensus 72 ~v~~a 76 (77)
T 1uaw_A 72 DPKVA 76 (77)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99886
No 119
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.1e-20 Score=125.41 Aligned_cols=79 Identities=15% Similarity=0.178 Sum_probs=71.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCe-EEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGY-KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i-~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
+.++|||+|||+++|+++|+++|++||.| ..|+++.++ +|+++|||||+|.+.++|++|++. |+..|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~----~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g----- 83 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN----NGQGLGQALVQFKNEDDARKSERL-HRKKLNG----- 83 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT----TSSCSSCEEEECSSHHHHHHHGGG-CSEEETT-----
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC----CCCcceEEEEEECCHHHHHHHHHh-CCCccCC-----
Confidence 36899999999999999999999999999 788888774 588999999999999999999976 9999977
Q ss_pred ccEEEEeecC
Q 031746 131 KFLRLQFSRN 140 (153)
Q Consensus 131 r~l~V~~a~~ 140 (153)
+.|+|+++..
T Consensus 84 r~i~v~~a~~ 93 (114)
T 2cpy_A 84 REAFVHVVTL 93 (114)
T ss_dssp EEEEEEEECH
T ss_pred eEEEEEECCH
Confidence 5799999864
No 120
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=2e-20 Score=122.20 Aligned_cols=79 Identities=23% Similarity=0.387 Sum_probs=69.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..+ . .+++++|||||+|.+.++|.+|++.|||..|.+ +
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~----~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 81 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----S----QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG-----R 81 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----E----ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----C----CCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-----e
Confidence 36899999999999999999999999987655 1 357889999999999999999999999999987 4
Q ss_pred cEEEEeecCCCC
Q 031746 132 FLRLQFSRNPGP 143 (153)
Q Consensus 132 ~l~V~~a~~~~~ 143 (153)
.|+|+++.+++.
T Consensus 82 ~l~v~~a~~~~~ 93 (96)
T 1fjc_A 82 SVSLYYTGEKGG 93 (96)
T ss_dssp EEEEEECSSSCC
T ss_pred EEEEEEcCCCCC
Confidence 799999986544
No 121
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.82 E-value=8e-20 Score=135.48 Aligned_cols=82 Identities=24% Similarity=0.305 Sum_probs=75.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++|+++|+++|++||.|.+|+++.++ .+++++|||||+|.+.++|.+|++.+|+..+.+ +
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~---~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g-----~ 85 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDM---ITRRSLGYAYVNFQQPADAERALDTMNFDVIKG-----K 85 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeccc---CCCCccccccceeCCHHHHHHHHHHhhhhhcCC-----c
Confidence 46899999999999999999999999999999999887 678999999999999999999999999999977 4
Q ss_pred cEEEEeecCC
Q 031746 132 FLRLQFSRNP 141 (153)
Q Consensus 132 ~l~V~~a~~~ 141 (153)
.|+|.++...
T Consensus 86 ~i~~~~~~~~ 95 (213)
T 4f02_A 86 PVRIMWSQRD 95 (213)
T ss_dssp ECEEEECCCC
T ss_pred cccccccccc
Confidence 7999988753
No 122
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.82 E-value=2e-20 Score=118.87 Aligned_cols=73 Identities=23% Similarity=0.406 Sum_probs=65.2
Q ss_pred CeEEEcCCCCCC------CHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 031746 54 STLYVEGLPADS------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 127 (153)
Q Consensus 54 ~~L~V~nLp~~~------te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~ 127 (153)
++|||+|||+++ ++++|+++|++||.|.++.+.. .+|+++|||||+|.+.++|++|++.|||..+.+++
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~-----~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 76 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE-----EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 76 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC-----BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC-----CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCce
Confidence 789999999999 7799999999999999998762 35889999999999999999999999999998851
Q ss_pred CCCccEEE
Q 031746 128 PDSKFLRL 135 (153)
Q Consensus 128 ~~~r~l~V 135 (153)
+|+|
T Consensus 77 ----~l~V 80 (81)
T 2krb_A 77 ----TFRV 80 (81)
T ss_dssp ----CCCC
T ss_pred ----eEEe
Confidence 4665
No 123
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.82 E-value=1.6e-19 Score=119.64 Aligned_cols=75 Identities=19% Similarity=0.392 Sum_probs=68.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|..+.++. +||||+|.+.++|++|++.|||..|.+ +.
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-----------~~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 74 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-----------DYAFIHFDERDGAVKAMEEMNGKDLEG-----EN 74 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-----------SCEEEEESSHHHHHHHHHHHTTEEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-----------CEEEEEeCCHHHHHHHHHHHCCCccCC-----CE
Confidence 68999999999999999999999999999998862 399999999999999999999999987 47
Q ss_pred EEEEeecCCCC
Q 031746 133 LRLQFSRNPGP 143 (153)
Q Consensus 133 l~V~~a~~~~~ 143 (153)
|+|+|++++..
T Consensus 75 l~v~~a~~~~~ 85 (103)
T 2dgu_A 75 IEIVFAKPPDQ 85 (103)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEcCCCcc
Confidence 99999987543
No 124
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.82 E-value=3.5e-20 Score=139.52 Aligned_cols=80 Identities=11% Similarity=0.136 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC--CeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCC
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFV--GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 129 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G--~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~ 129 (153)
..++|||+|||+++|+++|+++|++|| .|.+|+|+.++ .+|+++|||||+|.+.++|++||+.|||+.|.++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~---~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr--- 140 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENR---ANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ--- 140 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECT---TTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB---
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecC---CCCccceEEEEEECCHHHHHHHHHHcCCCeECCE---
Confidence 357899999999999999999999999 99999999886 6799999999999999999999999999999874
Q ss_pred CccEEEEeec
Q 031746 130 SKFLRLQFSR 139 (153)
Q Consensus 130 ~r~l~V~~a~ 139 (153)
.|+|++++
T Consensus 141 --~l~V~~a~ 148 (229)
T 3q2s_C 141 --NPVVTPVN 148 (229)
T ss_dssp --CCEEEECC
T ss_pred --EeEEEECC
Confidence 69999975
No 125
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=116.12 Aligned_cols=73 Identities=22% Similarity=0.363 Sum_probs=66.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHh-CCCccCCCCCCCc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL-QGYRMDEDDPDSK 131 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l-~g~~l~~~~~~~r 131 (153)
.++|||+|||+++++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|++.| ||..+.+ +
T Consensus 12 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~---------kg~afV~f~~~~~A~~a~~~l~~~~~~~g-----~ 77 (85)
T 2ytc_A 12 ITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR---------QQCAFIQFATRQAAEVAAEKSFNKLIVNG-----R 77 (85)
T ss_dssp CCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG---------GTEEEEEESSHHHHHHHHHTTTTTCEETT-----E
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC---------CCEEEEEECCHHHHHHHHHHhcCCeeECC-----C
Confidence 689999999999999999999999999999998754 359999999999999999989 9999987 4
Q ss_pred cEEEEeec
Q 031746 132 FLRLQFSR 139 (153)
Q Consensus 132 ~l~V~~a~ 139 (153)
.|+|+|++
T Consensus 78 ~l~v~~ak 85 (85)
T 2ytc_A 78 RLNVKWGR 85 (85)
T ss_dssp ECCEEECC
T ss_pred EEEEEecC
Confidence 79999975
No 126
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.81 E-value=3e-20 Score=121.51 Aligned_cols=80 Identities=24% Similarity=0.380 Sum_probs=71.7
Q ss_pred CCCeEEEcCCCCCCCHHHHH----HhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 031746 52 ASSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 127 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~----~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~ 127 (153)
++++|||+|||+++++++|+ ++|++||.|..+.+.. +|+++|||||+|.+.++|.+|++.|||..+.+
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-- 78 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR------SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD-- 78 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH------HHHHTTCEEEEESSHHHHHHHHHHHTTCEETT--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc------CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC--
Confidence 36899999999999999999 9999999999998762 25667899999999999999999999999977
Q ss_pred CCCccEEEEeecCCC
Q 031746 128 PDSKFLRLQFSRNPG 142 (153)
Q Consensus 128 ~~~r~l~V~~a~~~~ 142 (153)
+.|+|+|+++++
T Consensus 79 ---~~l~v~~a~~~~ 90 (97)
T 1nu4_A 79 ---KPMRIQYAKTDS 90 (97)
T ss_dssp ---EECEEEECSSCC
T ss_pred ---cEEEEEEccCCC
Confidence 479999998654
No 127
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.81 E-value=3.8e-19 Score=128.99 Aligned_cols=82 Identities=21% Similarity=0.299 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 51 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 51 ~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
.+.++|||+|||+++++++|+++|++||.|..|.+..+. +|.++|||||+|.+.++|.+|++.|||..|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~----~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr---- 157 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR----SGRSLGTADVHFERRADALKAMKQYKGVPLDGR---- 157 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT----TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSS----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC----CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCE----
Confidence 446899999999999999999999999999999998764 578899999999999999999999999999874
Q ss_pred ccEEEEeecCC
Q 031746 131 KFLRLQFSRNP 141 (153)
Q Consensus 131 r~l~V~~a~~~ 141 (153)
.|+|+|+...
T Consensus 158 -~l~V~~a~~~ 167 (177)
T 2f3j_A 158 -PMDIQLVASQ 167 (177)
T ss_dssp -BCEEEEESSG
T ss_pred -EEEEEEecCC
Confidence 7999999753
No 128
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-19 Score=121.05 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=66.7
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCC--CccCCCCC
Q 031746 52 ASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG--YRMDEDDP 128 (153)
Q Consensus 52 ~~~~L~V~nLp~~-~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g--~~l~~~~~ 128 (153)
++++|||+|||++ +++++|+++|++||.|.+|.++.. +|||||+|++.++|++|++.||+ ..|.+
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~---------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G--- 91 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM---------KSQAFIEMETREDAMAMVDHCLKKALWFQG--- 91 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT---------TTEEEEECSSHHHHHHHHHHHHHSCCCSSS---
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC---------CCEEEEEECCHHHHHHHHHHhccCCceECC---
Confidence 3789999999998 999999999999999999998632 46999999999999999998865 45766
Q ss_pred CCccEEEEeecCC
Q 031746 129 DSKFLRLQFSRNP 141 (153)
Q Consensus 129 ~~r~l~V~~a~~~ 141 (153)
|+|+|+|++..
T Consensus 92 --r~l~V~~a~~~ 102 (112)
T 1x4f_A 92 --RCVKVDLSEKY 102 (112)
T ss_dssp --SCCEEEEECSC
T ss_pred --EEEEEEECccc
Confidence 57999999864
No 129
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.81 E-value=1.1e-19 Score=122.99 Aligned_cols=79 Identities=13% Similarity=0.200 Sum_probs=67.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|..|.++.+ |||||+|.+.++|++|++.|||+.|.++......
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 689999999999999999999999999999988643 5999999999999999999999999886422233
Q ss_pred EEEEeecCC
Q 031746 133 LRLQFSRNP 141 (153)
Q Consensus 133 l~V~~a~~~ 141 (153)
|+|..+.+.
T Consensus 86 i~v~~~~~~ 94 (115)
T 3beg_B 86 IRVKVDGPR 94 (115)
T ss_dssp CEEEECC--
T ss_pred EEeccCCCC
Confidence 788877654
No 130
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.81 E-value=4.3e-20 Score=128.78 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCC---eEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVG---YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 128 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~---i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~ 128 (153)
+.++|||+|||+++|+++|+++|++||. |..|+++.++ . |+++|||||+|.+.++|++|++ |||..|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~---~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g--- 114 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTR---E-GRQSGEAFVELGSEDDVKMALK-KDRESMGH--- 114 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECS---S-SCEEEEEEEECSSHHHHHHHHT-TTEEESSS---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECC---C-CCCCeEEEEEECCHHHHHHHHh-cCCCEECC---
Confidence 3689999999999999999999999999 8889998876 4 8899999999999999999998 99999977
Q ss_pred CCccEEEEeecC
Q 031746 129 DSKFLRLQFSRN 140 (153)
Q Consensus 129 ~~r~l~V~~a~~ 140 (153)
|.|+|.++..
T Consensus 115 --r~i~V~~a~~ 124 (136)
T 2hgl_A 115 --RYIEVFKSHR 124 (136)
T ss_dssp --SEEEEEECCH
T ss_pred --EEEEEEECCh
Confidence 5799998864
No 131
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.6e-19 Score=115.38 Aligned_cols=79 Identities=25% Similarity=0.363 Sum_probs=69.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|| ++++++|+++|++||.|..|.+.. ++|||||+|.+.++|++|++.|||..+.+ +
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~---------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-----~ 77 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP---------PRNCAFVTYEKMESADQAVAELNGTQVES-----V 77 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHTTTEEETT-----E
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC---------CCCEEEEEECCHHHHHHHHHHhCCCeECC-----e
Confidence 3689999996 999999999999999999998842 34699999999999999999999999977 5
Q ss_pred cEEEEeecCCCCCCC
Q 031746 132 FLRLQFSRNPGPRSV 146 (153)
Q Consensus 132 ~l~V~~a~~~~~r~~ 146 (153)
.|+|+|+++++.+..
T Consensus 78 ~l~v~~a~~~~~~~~ 92 (97)
T 1x5p_A 78 QLKVNIARKQPMLDS 92 (97)
T ss_dssp EEEEECCSSCCCCCS
T ss_pred EEEEEECCCCCCCCC
Confidence 799999987655443
No 132
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.81 E-value=1.7e-19 Score=129.03 Aligned_cols=79 Identities=22% Similarity=0.263 Sum_probs=69.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
..+|||+||++.+|+++|+++|++||.|.+|.+...+ ++|||||+|.+.++|++|++.|||..|.+ .++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~-------~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g---~g~~ 115 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-------NQFQALLQYADPVSAQHAKLSLDGQNIYN---ACCT 115 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS-------SCEEEEEEESCHHHHHHHHHHSTTBCSSS---SCSC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC-------CCCEEEEEECCHHHHHHHHHHhCCCEecC---CCcE
Confidence 4679999999999999999999999999999986432 46799999999999999999999999976 2257
Q ss_pred EEEEeecCC
Q 031746 133 LRLQFSRNP 141 (153)
Q Consensus 133 l~V~~a~~~ 141 (153)
|+|+|++++
T Consensus 116 L~V~~Ak~~ 124 (164)
T 1sjr_A 116 LRIDFSKLT 124 (164)
T ss_dssp EEEEECSSS
T ss_pred EEEEEecCC
Confidence 999999864
No 133
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=7.4e-20 Score=117.98 Aligned_cols=73 Identities=12% Similarity=0.058 Sum_probs=67.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
+.-|||+||++.+||++|+++|.+||+|.++++.. ++|||||+|.+.++|++|++.||+.++.+ ++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g-----r~ 72 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---------NQGIALCKYTTREEANKAQMALNNCVLAN-----TT 72 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHTTEEETT-----EE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---------CCcEEEEEECCHHHHHHHHHHhcCCEECC-----cE
Confidence 56799999999999999999999999999999864 35799999999999999999999999988 57
Q ss_pred EEEEeec
Q 031746 133 LRLQFSR 139 (153)
Q Consensus 133 l~V~~a~ 139 (153)
|+|+++.
T Consensus 73 I~V~~A~ 79 (89)
T 2wbr_A 73 IFAESPS 79 (89)
T ss_dssp EEEECCC
T ss_pred EEEEECC
Confidence 9999984
No 134
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=1.2e-18 Score=119.56 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=66.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceE-EEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLIL-CFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~-~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
-.|||+||++.+++++|+++|++||.|.+|.+.. + . || |||+|.+.++|..|++.|||..|.+. .+.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~----~----Gf~aFVef~~~~~A~~A~~~LnG~~i~g~---~~~ 93 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R----N----GIQAMVEFESVLCAQKAKAALNGADIYAG---CCT 93 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S----S----SEEEEEEESSHHHHHHHHHHHTTCCCBTT---BSE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C----C----CCEEEEEECCHHHHHHHHHHhCCCEecCC---CeE
Confidence 3468999999999999999999999999998854 2 1 56 99999999999999999999999873 247
Q ss_pred EEEEeecCC
Q 031746 133 LRLQFSRNP 141 (153)
Q Consensus 133 l~V~~a~~~ 141 (153)
|+|+|++++
T Consensus 94 l~V~~Ak~~ 102 (124)
T 2e5i_A 94 LKIEYARPT 102 (124)
T ss_dssp EEEECCSCS
T ss_pred EEEEEecCC
Confidence 999999865
No 135
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.80 E-value=5.5e-20 Score=122.83 Aligned_cols=80 Identities=16% Similarity=0.237 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCC---eEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 031746 51 DASSTLYVEGLPADSTKREVAHIFRPFVG---YKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 127 (153)
Q Consensus 51 ~~~~~L~V~nLp~~~te~~l~~~F~~~G~---i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~ 127 (153)
.+.++|||+|||+++|+++|+++|++||. |..|+++.+. . |+++|||||+|.+.++|++|++ +|+..|.+
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~---~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g-- 81 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR---D-GKRRGDALIEMESEQDVQKALE-KHRMYMGQ-- 81 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCT---T-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSS--
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECC---C-CCEeeEEEEEECCHHHHHHHHH-hCcceeCC--
Confidence 34689999999999999999999999988 8889988775 3 8899999999999999999998 99999977
Q ss_pred CCCccEEEEeecC
Q 031746 128 PDSKFLRLQFSRN 140 (153)
Q Consensus 128 ~~~r~l~V~~a~~ 140 (153)
|.|+|.++..
T Consensus 82 ---r~i~V~~a~~ 91 (107)
T 2lmi_A 82 ---RYVEVYEINN 91 (107)
T ss_dssp ---SCCCCEECCH
T ss_pred ---eEEEEEECCH
Confidence 4699998864
No 136
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.80 E-value=3e-20 Score=130.04 Aligned_cols=81 Identities=20% Similarity=0.322 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
..++|||+|||+++|+++|+++|++|| |++|+|+.++ . |+++|||||+|.+.++|++|+ .+|+..|.++
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~---~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR----- 113 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP---D-GRVTGEADVEFATHEEAVAAM-SKDRANMQHR----- 113 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS---S-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSC-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC---C-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCE-----
Confidence 368999999999999999999999999 7789888775 3 889999999999999999999 8999999774
Q ss_pred cEEEEeecCCCC
Q 031746 132 FLRLQFSRNPGP 143 (153)
Q Consensus 132 ~l~V~~a~~~~~ 143 (153)
.|+|.++..+..
T Consensus 114 ~i~V~~a~~~~~ 125 (139)
T 2hgn_A 114 YIELFLNSTTGA 125 (139)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 699999887544
No 137
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.9e-19 Score=116.97 Aligned_cols=74 Identities=22% Similarity=0.368 Sum_probs=67.7
Q ss_pred CCeEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 53 SSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 53 ~~~L~V~nLp~-~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
.++|||+|||+ ++++++|+++|++||.|.++.+. +|||||+|.+.++|.+|++.|||..+.++
T Consensus 10 ~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~----- 73 (96)
T 2kvi_A 10 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIECESQEMNFGK----- 73 (96)
T ss_dssp CEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----------TTEEEEEESCHHHHHHHHHHHTCSSCBTT-----
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCeeCCc-----
Confidence 68999999999 99999999999999999999883 35999999999999999999999999874
Q ss_pred cEEEEeecCCC
Q 031746 132 FLRLQFSRNPG 142 (153)
Q Consensus 132 ~l~V~~a~~~~ 142 (153)
.|+|++++...
T Consensus 74 ~l~V~~a~~~~ 84 (96)
T 2kvi_A 74 KLILEVSSSNA 84 (96)
T ss_dssp TBCEEEEECCC
T ss_pred EEEEEEcCcCC
Confidence 69999998653
No 138
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.80 E-value=4.2e-19 Score=124.99 Aligned_cols=77 Identities=26% Similarity=0.398 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|.+++++.+ ++|||||+|.+.++|.+|++.|||..|.++
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----- 138 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--------PPGFAFVEFEDPRDAADAVRELDGRTLCGC----- 138 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--------SCSEEEEEESSHHHHHHHHHHHSSSCSSSS-----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--------CCcEEEEEECCHHHHHHHHHHcCCCEECCe-----
Confidence 3689999999999999999999999999999999754 357999999999999999999999999774
Q ss_pred cEEEEeecCC
Q 031746 132 FLRLQFSRNP 141 (153)
Q Consensus 132 ~l~V~~a~~~ 141 (153)
.|+|+|++++
T Consensus 139 ~l~v~~a~~~ 148 (150)
T 2i2y_A 139 RVRVELSNGE 148 (150)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEcCCC
Confidence 6999999864
No 139
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=121.05 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=69.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
..+|||+|||+++|+++|+++|++| .|.+|+|+.++ .|+++|||||+|.+.++|++|+ .+|+..|.+ |.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~----~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g-----r~ 84 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH----VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ-----RY 84 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT----TCCCCSEEEEECSSHHHHHHHH-HTTTEEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC----CCCCCeEEEEEECCHHHHHHHH-hcCCCeECC-----eE
Confidence 5799999999999999999999999 89999998875 3889999999999999999999 799999977 57
Q ss_pred EEEEeecC
Q 031746 133 LRLQFSRN 140 (153)
Q Consensus 133 l~V~~a~~ 140 (153)
|+|..+..
T Consensus 85 i~V~~a~~ 92 (109)
T 2dnn_A 85 VEVSPATE 92 (109)
T ss_dssp EEEEECCH
T ss_pred EEEEECCc
Confidence 99988753
No 140
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.9e-19 Score=118.71 Aligned_cols=74 Identities=19% Similarity=0.369 Sum_probs=67.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|.++++.. ++|||||+|.+.++|++|+..|||..+.+ +.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~---------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~~ 92 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP---------EKGCCFIKYDTHEQAAVCIVALANFPFQG-----RN 92 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET---------TTTEEEEECSSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec---------CCCEEEEEECCHHHHHHHHHHhCCCeECC-----eE
Confidence 68999999999999999999999999999998873 24699999999999999999999999987 47
Q ss_pred EEEEeecC
Q 031746 133 LRLQFSRN 140 (153)
Q Consensus 133 l~V~~a~~ 140 (153)
|+|+|+++
T Consensus 93 l~V~~a~~ 100 (101)
T 2la4_A 93 LRTGWGKE 100 (101)
T ss_dssp CCCCBCCC
T ss_pred EEEEeccC
Confidence 99999874
No 141
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3e-19 Score=120.14 Aligned_cols=74 Identities=23% Similarity=0.273 Sum_probs=67.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|..|.+.. ++|||||+|.+.++|++|++.|||+.+.+ +.
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-----~~ 75 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---------GGITAIVEFLEPLEARKAFRHLAYSKFHH-----VP 75 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---------SSSCEEEEESCHHHHHHHHHHHTTCBSSS-----SB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---------CCCEEEEEeCCHHHHHHHHHHhCCCEECC-----eE
Confidence 57999999999999999999999999999988763 24599999999999999999999999987 47
Q ss_pred EEEEeecC
Q 031746 133 LRLQFSRN 140 (153)
Q Consensus 133 l~V~~a~~ 140 (153)
|+|+|++.
T Consensus 76 l~V~~a~~ 83 (111)
T 1whx_A 76 LYLEWAPI 83 (111)
T ss_dssp CEEEEEET
T ss_pred EEEEECCC
Confidence 99999975
No 142
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.79 E-value=2.1e-19 Score=125.57 Aligned_cols=85 Identities=24% Similarity=0.437 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEE------EEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEV------RLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 125 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~------~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~ 125 (153)
+.++|||+|||+++|+++|+++|++||.|..+ .+... .+|+++|||||+|.+.++|.+|+..|||..|.+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~----~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM----KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE----EETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec----cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 46899999999999999999999999998763 11111 247889999999999999999999999999977
Q ss_pred CCCCCccEEEEeecCCCCCC
Q 031746 126 DDPDSKFLRLQFSRNPGPRS 145 (153)
Q Consensus 126 ~~~~~r~l~V~~a~~~~~r~ 145 (153)
+.|+|+|++...++.
T Consensus 120 -----~~l~V~~a~~~~~~~ 134 (143)
T 3egn_A 120 -----KPMVVQFARSARPKQ 134 (143)
T ss_dssp -----EECEEEECCCSCC--
T ss_pred -----cEEEEEECCCCCCcc
Confidence 579999998755544
No 143
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.79 E-value=6.3e-19 Score=143.77 Aligned_cols=82 Identities=22% Similarity=0.375 Sum_probs=75.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++|+++|+++|++||.|..|.|+.+. .+|+++|||||+|.+.++|.+||+.|||..|.+.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~---~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr----- 172 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSK---RSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR----- 172 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccC---CCCCccceEEEeeccHHHHHHHHHHcCCCEECCE-----
Confidence 45899999999999999999999999999999999876 5788999999999999999999999999999874
Q ss_pred cEEEEeecCC
Q 031746 132 FLRLQFSRNP 141 (153)
Q Consensus 132 ~l~V~~a~~~ 141 (153)
.|+|+|+...
T Consensus 173 ~i~V~~a~~~ 182 (437)
T 3pgw_S 173 RVLVDVERGR 182 (437)
T ss_pred EEEEEEeCCC
Confidence 7999999853
No 144
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.3e-18 Score=122.63 Aligned_cols=80 Identities=20% Similarity=0.370 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..+.++.+. .+|.++|||||+|.+.++|.+|++.|||..+.+ +
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 157 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDM---QTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG-----R 157 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECT---TTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT-----E
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecC---CCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC-----c
Confidence 36899999999999999999999999999999999876 568899999999999999999999999999977 5
Q ss_pred cEEEEeec
Q 031746 132 FLRLQFSR 139 (153)
Q Consensus 132 ~l~V~~a~ 139 (153)
.|+|+|++
T Consensus 158 ~i~v~~a~ 165 (166)
T 3md3_A 158 PLRINWAA 165 (166)
T ss_dssp ECEEEESC
T ss_pred EEEEEecC
Confidence 79999986
No 145
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.79 E-value=1.3e-18 Score=127.94 Aligned_cols=83 Identities=18% Similarity=0.359 Sum_probs=76.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|..++++.+. .+|+++|||||+|.+.++|.+|++.|||..|.+ +.
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~---~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g-----~~ 196 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDP---TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGG-----QY 196 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSS-----SB
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecC---CCCCcCceEEEEecCHHHHHHHHHHccCCEeCC-----cE
Confidence 5899999999999999999999999999999999886 568899999999999999999999999999977 47
Q ss_pred EEEEeecCCCC
Q 031746 133 LRLQFSRNPGP 143 (153)
Q Consensus 133 l~V~~a~~~~~ 143 (153)
|+|+|+..++.
T Consensus 197 i~V~~a~~~~~ 207 (216)
T 2qfj_A 197 LRVGKAVTPPM 207 (216)
T ss_dssp CEEEECSSCSS
T ss_pred EEEEEecCCCC
Confidence 99999997643
No 146
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=9.9e-19 Score=113.92 Aligned_cols=77 Identities=17% Similarity=0.279 Sum_probs=66.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|.+| +.++ .+|+ ||||+|.+.++|++|++ |||..|.+ +.
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~---~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g-----~~ 73 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDK---DKGV---FAIVEMGDVGAREAVLS-QSQHSLGG-----HR 73 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECS---SSCC---EEEEEESSHHHHHHHHT-CSCCEETT-----EE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcC---CCCc---EEEEEECCHHHHHHHHh-cCCeEECC-----EE
Confidence 5799999999999999999999999999987 3343 2343 99999999999999999 99999987 47
Q ss_pred EEEEeecCCCC
Q 031746 133 LRLQFSRNPGP 143 (153)
Q Consensus 133 l~V~~a~~~~~ 143 (153)
|+|+++.....
T Consensus 74 l~V~~a~~~~~ 84 (94)
T 2e5g_A 74 LRVRPREQKEF 84 (94)
T ss_dssp CCCBCSCCSCC
T ss_pred EEEEECCcCCC
Confidence 99999876543
No 147
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.79 E-value=6.2e-20 Score=114.60 Aligned_cols=75 Identities=13% Similarity=0.314 Sum_probs=67.6
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccEE
Q 031746 55 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLR 134 (153)
Q Consensus 55 ~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~ 134 (153)
+|||+|||+++++++|+++|++||.|.++.++.++ .+|+++|||||+|.+.++|++|++ +++..+.++ .|+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~-----~l~ 71 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN---KTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLS-----KCE 71 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSC---CCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTB-----CCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC---CCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCE-----EEE
Confidence 59999999999999999999999999999888776 568899999999999999999997 588999774 588
Q ss_pred EEee
Q 031746 135 LQFS 138 (153)
Q Consensus 135 V~~a 138 (153)
|++|
T Consensus 72 v~~a 75 (75)
T 1iqt_A 72 IKVA 75 (75)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8875
No 148
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.79 E-value=7.5e-19 Score=124.43 Aligned_cols=82 Identities=28% Similarity=0.446 Sum_probs=75.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|.+++++.+. .+|.++|||||+|.+.++|.+|++.|||..+.+ +.
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-----~~ 74 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDY---KTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN-----KR 74 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEET---TTTEECSEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeC---CCCccceEEEEEECCHHHHHHHHHhcCCCEeCC-----cE
Confidence 6899999999999999999999999999999998876 568899999999999999999999999999977 47
Q ss_pred EEEEeecCCC
Q 031746 133 LRLQFSRNPG 142 (153)
Q Consensus 133 l~V~~a~~~~ 142 (153)
|+|+++.+..
T Consensus 75 l~v~~~~~~~ 84 (168)
T 1b7f_A 75 LKVSYARPGG 84 (168)
T ss_dssp CEEEECCCCS
T ss_pred EEEEecCCCc
Confidence 9999998643
No 149
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.79 E-value=1.9e-19 Score=130.57 Aligned_cols=84 Identities=10% Similarity=0.222 Sum_probs=72.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++|+++|+++|++||.|..+.++.+. .+|.++|||||+|.+.++|.+|+.. +|..|.+ +.
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G-----~~ 174 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR---GSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNG-----HN 174 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHC-SCCEETT-----EE
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC---CCCCccceEEEEECCHHHHHHHHHh-CCcEECC-----EE
Confidence 5899999999999999999999999999999999876 5688999999999999999999976 8999977 47
Q ss_pred EEEEeecCCCCCC
Q 031746 133 LRLQFSRNPGPRS 145 (153)
Q Consensus 133 l~V~~a~~~~~r~ 145 (153)
|+|+++.++....
T Consensus 175 i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 175 CEVRKALSKQEMA 187 (196)
T ss_dssp CEEEECC------
T ss_pred EEEEecCChhHhc
Confidence 9999998764433
No 150
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.79 E-value=1.2e-18 Score=123.01 Aligned_cols=81 Identities=26% Similarity=0.463 Sum_probs=75.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|.++.++.+. .+|+++|||||+|.+.++|.+|++.|||..+.+ +.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~---~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-----~~ 73 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK---ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-----KT 73 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC---CCCcceeEEEEEECCHHHHHHHHHHcCCCccCC-----ce
Confidence 5899999999999999999999999999999998876 578899999999999999999999999999977 47
Q ss_pred EEEEeecCC
Q 031746 133 LRLQFSRNP 141 (153)
Q Consensus 133 l~V~~a~~~ 141 (153)
|+|+++.+.
T Consensus 74 l~v~~~~~~ 82 (167)
T 1fxl_A 74 IKVSYARPS 82 (167)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 999999854
No 151
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=8.4e-19 Score=114.44 Aligned_cols=78 Identities=12% Similarity=0.230 Sum_probs=68.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEE-EeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVR-LVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~-~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
..++|||+|||+++++++|+++|++||.|..++ ++.+. .+ |.|||+|.+.++|.+|++.|||..+.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~---~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g----- 81 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS---ET----AVVNVTYSSKDQARQALDKLNGFQLEN----- 81 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS---SS----EEEEEEESSHHHHHHHHHHHTTCBCSS-----
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CC----CEEEEEECCHHHHHHHHHHhCCCEECC-----
Confidence 368999999999999999999999999999995 66554 22 349999999999999999999999987
Q ss_pred ccEEEEeecCC
Q 031746 131 KFLRLQFSRNP 141 (153)
Q Consensus 131 r~l~V~~a~~~ 141 (153)
+.|+|+++.+.
T Consensus 82 ~~l~V~~a~~~ 92 (96)
T 2e44_A 82 FTLKVAYIPDE 92 (96)
T ss_dssp CBCEEEECCCC
T ss_pred cEEEEEEcCcc
Confidence 47999999865
No 152
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.78 E-value=9.7e-19 Score=120.84 Aligned_cols=78 Identities=22% Similarity=0.267 Sum_probs=68.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceE-EEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLIL-CFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~-~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
.-.|||+||++.+|+++|+++|++||.|.+|.+.... +|| |||+|.+.++|.+|++.|||..|.+. .+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~--------~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~---~~ 96 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--------NQFQALLQYADPVSAQHAKLSLDGQNIYNA---CC 96 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET--------TEEEEEEEESCHHHHHHHHHHHTTCEEETT---EE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC--------CCcEEEEEECCHHHHHHHHHHcCCCeecCC---Cc
Confidence 3467899999999999999999999999999886532 467 99999999999999999999999873 25
Q ss_pred cEEEEeecCC
Q 031746 132 FLRLQFSRNP 141 (153)
Q Consensus 132 ~l~V~~a~~~ 141 (153)
+|+|+|+++.
T Consensus 97 ~LrI~~ak~~ 106 (130)
T 3zzy_A 97 TLRIDFSKLT 106 (130)
T ss_dssp EEEEEECSCS
T ss_pred EEEEEecCCC
Confidence 7999999864
No 153
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.78 E-value=2.1e-18 Score=125.30 Aligned_cols=85 Identities=21% Similarity=0.340 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 51 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 51 ~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
.+.++|||+|||+++++++|+++|++||.|..+++..+. .+|.++|||||+|.+.++|.+|++.|||..+.+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----- 183 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS---ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD----- 183 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECT---TTCSEEEEEEEEESSSSHHHHHHHHHTTCEETT-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecC---CCCCcceEEEEEECCHHHHHHHHHHcCCCEECC-----
Confidence 346899999999999999999999999999999998875 568899999999999999999999999999977
Q ss_pred ccEEEEeecCCCC
Q 031746 131 KFLRLQFSRNPGP 143 (153)
Q Consensus 131 r~l~V~~a~~~~~ 143 (153)
+.|+|+|++++.+
T Consensus 184 ~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 184 KKLLVQRASVGAK 196 (198)
T ss_dssp EECEEEESCCCCC
T ss_pred EEEEEEECCCCCC
Confidence 5799999986544
No 154
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.78 E-value=6.4e-19 Score=121.33 Aligned_cols=78 Identities=22% Similarity=0.341 Sum_probs=68.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeE--EEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCC
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYK--EVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPD 129 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~--~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~ 129 (153)
+.++|||+|||+++|+++|+++|++| .|. .|+++.++ . |+++|||||+|.+.++|++|++ +++..|.+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~---~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~g---- 110 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDP---E-GKITGEAFVQFASQELAEKALG-KHKERIGH---- 110 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCS---S-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTT----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECC---C-CCCceEEEEEECCHHHHHHHHH-HCCCEECC----
Confidence 36889999999999999999999999 677 88888775 3 8899999999999999999997 57788876
Q ss_pred CccEEEEeecC
Q 031746 130 SKFLRLQFSRN 140 (153)
Q Consensus 130 ~r~l~V~~a~~ 140 (153)
|.|+|..+..
T Consensus 111 -R~I~V~~a~~ 120 (126)
T 2hgm_A 111 -RYIEVFKSSQ 120 (126)
T ss_dssp -BCCCCEEECH
T ss_pred -EEEEEEECCH
Confidence 4689988753
No 155
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.77 E-value=1.8e-18 Score=111.49 Aligned_cols=74 Identities=26% Similarity=0.323 Sum_probs=67.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++| .|.++++. +++|||||+|.+.++|++|++.|||..+.+ +.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-----~~ 69 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG-----KD 69 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---------GGGTEEEECCSCHHHHHHHHHHHTTEEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---------CCCcEEEEEECCHHHHHHHHHHhCCCeECC-----cE
Confidence 5899999999999999999999999 99998884 245799999999999999999999999987 47
Q ss_pred EEEEeecCC
Q 031746 133 LRLQFSRNP 141 (153)
Q Consensus 133 l~V~~a~~~ 141 (153)
|+|++++..
T Consensus 70 l~V~~a~~~ 78 (88)
T 1wg1_A 70 LIVQLQPTD 78 (88)
T ss_dssp EEEEECCCC
T ss_pred EEEEEcCCC
Confidence 999999754
No 156
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.77 E-value=2.4e-18 Score=122.34 Aligned_cols=79 Identities=22% Similarity=0.358 Sum_probs=73.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|..+.+..+. .+|+++|||||+|.+.++|.+|++.|||..+.+ +.
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~~ 165 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS---ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD-----KK 165 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECT---TTCSEEEEEEEEESSTTHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecC---CCCCcceEEEEEeCCHHHHHHHHHHcCCCEECC-----eE
Confidence 6899999999999999999999999999999998875 568899999999999999999999999999987 47
Q ss_pred EEEEeec
Q 031746 133 LRLQFSR 139 (153)
Q Consensus 133 l~V~~a~ 139 (153)
|+|+||.
T Consensus 166 l~V~~As 172 (172)
T 2g4b_A 166 LLVQRAS 172 (172)
T ss_dssp CEEEECC
T ss_pred EEEEeCC
Confidence 9999873
No 157
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.77 E-value=7e-18 Score=119.39 Aligned_cols=80 Identities=24% Similarity=0.370 Sum_probs=73.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||.++++++|+++|++||.|..+.+..+. .+|+++|||||+|.+.++|.+|++.|||..+.+. +++
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~~~ 162 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDK---LTGRPRGVAFVRYNKREEAQEAISALNNVIPEGG---SQP 162 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC---SSC
T ss_pred CCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcC---CCCCcceEEEEEECCHHHHHHHHHHhcCCEecCC---CeE
Confidence 6899999999999999999999999999999998876 5688999999999999999999999999999773 257
Q ss_pred EEEEee
Q 031746 133 LRLQFS 138 (153)
Q Consensus 133 l~V~~a 138 (153)
|+|+||
T Consensus 163 l~V~~A 168 (168)
T 1b7f_A 163 LSVRLA 168 (168)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999986
No 158
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.76 E-value=1.8e-18 Score=111.98 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=62.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++|+++|+++|++||.|.+++++.+ ++|||||+|.+.++|+ .+++..+.. .++.
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--------srGfaFV~F~~~~~A~----~~~~~~~~~---~g~~ 75 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--------FRAFAFVTFADDKVAQ----SLCGEDLII---KGIS 75 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--------CCSEEEEEESCHHHHH----HHTTCEEEE---TTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--------CCCEEEEEECCHHHHH----HHcCCCccc---CCEE
Confidence 689999999999999999999999999999988753 4679999999999987 467776653 2367
Q ss_pred EEEEeecCCC
Q 031746 133 LRLQFSRNPG 142 (153)
Q Consensus 133 l~V~~a~~~~ 142 (153)
|+|.++.++.
T Consensus 76 v~v~~a~~k~ 85 (89)
T 3d2w_A 76 VHISNAEPKH 85 (89)
T ss_dssp EEEEECC---
T ss_pred EEEEEcCCCC
Confidence 9999988643
No 159
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.76 E-value=4.5e-18 Score=121.00 Aligned_cols=85 Identities=14% Similarity=0.278 Sum_probs=74.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCC--CcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCC
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGG--DPLILCFVDFENPACAATALSALQGYRMDEDDPD 129 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g--~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~ 129 (153)
+.++|||+|||+++|+++|+++|++||.|.+++++.+. .++ +++|||||+|.+.++|.+|++.|||..+.+. .
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~--~ 76 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDR---SQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPG--M 76 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEC---SSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTT--C
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecC---CCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccC--C
Confidence 36899999999999999999999999999999999876 344 7999999999999999999999999988754 2
Q ss_pred CccEEEEeecCC
Q 031746 130 SKFLRLQFSRNP 141 (153)
Q Consensus 130 ~r~l~V~~a~~~ 141 (153)
.+.+.+.++...
T Consensus 77 ~~~~~~~~~~~~ 88 (175)
T 3nmr_A 77 HHPIQMKPADSE 88 (175)
T ss_dssp SSCCEEEECGGG
T ss_pred ccceEEcccccc
Confidence 367888887754
No 160
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=117.22 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=67.1
Q ss_pred CCeEEE--cCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc-CCCCCC
Q 031746 53 SSTLYV--EGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM-DEDDPD 129 (153)
Q Consensus 53 ~~~L~V--~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l-~~~~~~ 129 (153)
+++||| |||++++++++|+++|++||.|.+|.+..+ +|||||+|.+.++|++|++.|||.++ ..-. .
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~---------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg-~ 94 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN---------KPYSFARYRTTEESKRAYVTLNGKEVVDDLG-Q 94 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT---------CSCEEEEESSHHHHHHHHHHTTTCEEECTTS-C
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---------CCEEEEEECCHHHHHHHHHHhCCCEEccccC-C
Confidence 688999 779999999999999999999999877532 46999999999999999999999987 2110 2
Q ss_pred CccEEEEeecCC
Q 031746 130 SKFLRLQFSRNP 141 (153)
Q Consensus 130 ~r~l~V~~a~~~ 141 (153)
+++|.|.|+..-
T Consensus 95 g~~l~v~~a~~~ 106 (114)
T 2cq2_A 95 KITLYLNFVEKV 106 (114)
T ss_dssp EEECEEEEESCC
T ss_pred CcEEEEEecccC
Confidence 468999999853
No 161
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.76 E-value=2.9e-18 Score=127.05 Aligned_cols=78 Identities=15% Similarity=0.301 Sum_probs=71.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++|+++|+++|++||.|..++++.+. +.++|||||+|.+.++|.+|++.|||..|.+ +.
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-----~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g-----~~ 172 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-----NGSKGYGFVHFETQEAAERAIEKMNGMLLND-----RK 172 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-----TEEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-----CCCceEEEEEeCCHHHHHHHHHHhCCCEECC-----EE
Confidence 5789999999999999999999999999999998875 3468999999999999999999999999987 57
Q ss_pred EEEEeecC
Q 031746 133 LRLQFSRN 140 (153)
Q Consensus 133 l~V~~a~~ 140 (153)
|+|+++++
T Consensus 173 i~V~~a~~ 180 (213)
T 4f02_A 173 VFVGRFKS 180 (213)
T ss_dssp CEEEECCC
T ss_pred EEEEEcCC
Confidence 99999875
No 162
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=7.8e-19 Score=120.42 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=68.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCe----EEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGY----KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 127 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i----~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~ 127 (153)
+.++|||+|||+++|+++|+++|++||.| ..|+|+.+. +|+++|||||+|.+.++|++|++. |+..|.+
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~----~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~g-- 94 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP----DGRPTGDAFVLFACEEYAQNALRK-HKDLLGK-- 94 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT----TSCEEEEEEECCSSHHHHHHHHTT-TTEESSS--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC----CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCC--
Confidence 36899999999999999999999999975 578888763 588999999999999999999975 9988876
Q ss_pred CCCccEEEEeec
Q 031746 128 PDSKFLRLQFSR 139 (153)
Q Consensus 128 ~~~r~l~V~~a~ 139 (153)
|.|+|..+.
T Consensus 95 ---R~i~V~~a~ 103 (123)
T 2dha_A 95 ---RYIELFRST 103 (123)
T ss_dssp ---CEECCEEEC
T ss_pred ---eEEEEEECC
Confidence 468888775
No 163
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.76 E-value=2.8e-18 Score=127.00 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=69.4
Q ss_pred CCeEEEcCCC-CCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 53 SSTLYVEGLP-ADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 53 ~~~L~V~nLp-~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+++|||+||| +.+++++|+++|++||.|.+|+++.++ +|||||+|.+.++|++|++.|||..+.+ +
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~--------~g~afV~f~~~~~A~~Ai~~lng~~~~g-----~ 70 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK--------PGAAMVEMADGYAVDRAITHLNNNFMFG-----Q 70 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS--------TTCEEEEESSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC--------CCEEEEEECCHHHHHHHHHHhCCCEECC-----c
Confidence 6899999999 899999999999999999999997542 4699999999999999999999999987 4
Q ss_pred cEEEEeecCC
Q 031746 132 FLRLQFSRNP 141 (153)
Q Consensus 132 ~l~V~~a~~~ 141 (153)
.|+|++++.+
T Consensus 71 ~l~v~~s~~~ 80 (205)
T 3tyt_A 71 KMNVCVSKQP 80 (205)
T ss_dssp ECEEEECSCS
T ss_pred eEEEEEccCC
Confidence 7999999753
No 164
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.76 E-value=4.7e-18 Score=120.89 Aligned_cols=81 Identities=22% Similarity=0.316 Sum_probs=73.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++|+++|+++|++||.|..++++.+. .|+++|||||+|.+.++|.+|++.|||..+.+. .+++
T Consensus 95 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~----~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g--~~~~ 168 (175)
T 3nmr_A 95 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP----DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG--CSSP 168 (175)
T ss_dssp GSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT----TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTT--CSSC
T ss_pred CCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC----CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCC--CCCC
Confidence 6899999999999999999999999999999998774 488999999999999999999999999988753 2367
Q ss_pred EEEEeec
Q 031746 133 LRLQFSR 139 (153)
Q Consensus 133 l~V~~a~ 139 (153)
|+|+||.
T Consensus 169 l~V~~ad 175 (175)
T 3nmr_A 169 MVVKFAD 175 (175)
T ss_dssp CEEEECC
T ss_pred eEEEecC
Confidence 9999973
No 165
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.76 E-value=6.8e-19 Score=116.18 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=70.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|..++++.+. +|+++|||||+|.+.++|++|++ ++..+.+ +.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~----~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g-----~~ 77 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR----TGVSKGYGFVSFYNDVDVQKIVE--SQINFHG-----KK 77 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT----TSCEEEEEEEEESSCCCHHHHTT--CCCEETT-----EE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC----CCCccceEEEEECCHHHHHHHHh--CCCeECC-----EE
Confidence 5899999999999999999999999999999998874 58899999999999999999997 8888877 46
Q ss_pred EEEEeecCC
Q 031746 133 LRLQFSRNP 141 (153)
Q Consensus 133 l~V~~a~~~ 141 (153)
|.|.++...
T Consensus 78 l~v~~a~~~ 86 (102)
T 2xs2_A 78 LKLGPAIRK 86 (102)
T ss_dssp CEEEEEEEC
T ss_pred EEEEECCcC
Confidence 898888743
No 166
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.75 E-value=3.7e-18 Score=123.78 Aligned_cols=81 Identities=12% Similarity=0.208 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++|+++|+++|++||.|.+|.++.+. .+|.++|||||+|.+.++|.+|++. ++..+.+ +
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g-----~ 82 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDP---NTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDG-----R 82 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHT-CSCEETT-----E
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcC---CCCCccceEEEEeCCHHHHHHHHhc-CCCEECC-----E
Confidence 36899999999999999999999999999999999876 5688999999999999999999965 8999877 4
Q ss_pred cEEEEeecCC
Q 031746 132 FLRLQFSRNP 141 (153)
Q Consensus 132 ~l~V~~a~~~ 141 (153)
.|+|.++...
T Consensus 83 ~l~v~~~~~~ 92 (196)
T 1l3k_A 83 VVEPKRAVSR 92 (196)
T ss_dssp ECEEEECCC-
T ss_pred EeeeecccCc
Confidence 7999998754
No 167
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.75 E-value=5.6e-18 Score=119.38 Aligned_cols=80 Identities=18% Similarity=0.346 Sum_probs=72.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccE
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 133 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l 133 (153)
++|||+|||+++|+++|+++|++||.|.+++++.++ .++++|||||+|.+.++|.+|++.|||..+.+ +.|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~----~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-----~~i 71 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK----NNKNVNYAFVEYHQSHDANIALQTLNGKQIEN-----NIV 71 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC----C-CCEEEEEEEESSHHHHHHHHHHHTTCEETT-----EEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC----CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCC-----Cee
Confidence 589999999999999999999999999999998775 47789999999999999999999999999977 479
Q ss_pred EEEeecCCC
Q 031746 134 RLQFSRNPG 142 (153)
Q Consensus 134 ~V~~a~~~~ 142 (153)
+|+++....
T Consensus 72 ~v~~~~~~~ 80 (166)
T 3md3_A 72 KINWAFQSQ 80 (166)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCC
Confidence 999997653
No 168
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6.5e-18 Score=109.99 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=62.7
Q ss_pred CCe-EEEcCCCCCCCHHH----HHHhhcCC-CCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 53 SST-LYVEGLPADSTKRE----VAHIFRPF-VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 53 ~~~-L~V~nLp~~~te~~----l~~~F~~~-G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
+.+ |||+|||+.+++++ |+++|++| |.|.+| +| |||||.|.+.++|.+|++.|||..+.++
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----------TG---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 456 99999999999998 55899999 599887 12 6999999999999999999999999884
Q ss_pred CCCCccEEEEeecCC
Q 031746 127 DPDSKFLRLQFSRNP 141 (153)
Q Consensus 127 ~~~~r~l~V~~a~~~ 141 (153)
+|+|+||+..
T Consensus 75 -----~i~v~~A~~~ 84 (96)
T 2diu_A 75 -----RIIVSFTPKN 84 (96)
T ss_dssp -----CCEEESSCCS
T ss_pred -----eEEEEecCCC
Confidence 7999999864
No 169
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.75 E-value=9.8e-18 Score=118.25 Aligned_cols=80 Identities=23% Similarity=0.445 Sum_probs=73.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|..+++..+. .+|.++|||||+|.+.++|.+|++.|||..+.++. .+
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~---~~ 161 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ---VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT---EP 161 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS---SC
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecC---CCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCc---cc
Confidence 5889999999999999999999999999999998876 56889999999999999999999999999998853 35
Q ss_pred EEEEee
Q 031746 133 LRLQFS 138 (153)
Q Consensus 133 l~V~~a 138 (153)
|+|+||
T Consensus 162 i~v~~A 167 (167)
T 1fxl_A 162 ITVKFA 167 (167)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 899886
No 170
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.1e-18 Score=109.60 Aligned_cols=78 Identities=18% Similarity=0.199 Sum_probs=63.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|.+++++.+ ++|||||+|.+.++|++ +++..+.. .++.
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~----~~~~~~~~---~g~~ 69 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--------FRAFAFVTFADDQIAQS----LCGEDLII---KGIS 69 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--------CCSCCEEECSCHHHHHH----TTTCEEEE---TTEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--------CCCEEEEEECCHHHHHH----HhcCCcee---CCEE
Confidence 689999999999999999999999999999988743 46799999999999874 45555532 2357
Q ss_pred EEEEeecCCCCCC
Q 031746 133 LRLQFSRNPGPRS 145 (153)
Q Consensus 133 l~V~~a~~~~~r~ 145 (153)
|+|+++.++..+.
T Consensus 70 l~v~~a~~~~~~~ 82 (88)
T 1wf0_A 70 VHISNAEPKHNSN 82 (88)
T ss_dssp EEEECCCCCCCCC
T ss_pred EEEEecCCCCCCC
Confidence 9999998654443
No 171
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.74 E-value=2.8e-18 Score=121.49 Aligned_cols=80 Identities=11% Similarity=0.268 Sum_probs=73.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|..++++.+. .+|.++|||||+|.+.++|.+|++ +||..+.++ .
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~-----~ 157 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK---DTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDR-----K 157 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS---SSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSS-----C
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC---CCCccceEEEEEECCHHHHHHHHh-CCCEEeCCe-----E
Confidence 5789999999999999999999999999999998876 568899999999999999999997 899999774 6
Q ss_pred EEEEeecCC
Q 031746 133 LRLQFSRNP 141 (153)
Q Consensus 133 l~V~~a~~~ 141 (153)
|+|+|+.++
T Consensus 158 i~V~~a~pk 166 (167)
T 2cjk_A 158 IEIKRAEPR 166 (167)
T ss_dssp EEEEECCCC
T ss_pred EEEeecCCC
Confidence 999999853
No 172
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=1.1e-17 Score=123.05 Aligned_cols=81 Identities=19% Similarity=0.266 Sum_probs=71.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++|+++|+++|++||.|.+|+++.+. .+|+++|||||+|.+.++|.+|++.|||..+.++ .
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~-----~ 99 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDS---VTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGR-----N 99 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC----CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-C-----C
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecC---CCCccCceEEEEeCCHHHHHHHHHHccCCeeCCe-----e
Confidence 5899999999999999999999999999999998776 5688999999999999999999999999999874 6
Q ss_pred EEEEeecCC
Q 031746 133 LRLQFSRNP 141 (153)
Q Consensus 133 l~V~~a~~~ 141 (153)
|+|.++...
T Consensus 100 l~v~~~~~~ 108 (216)
T 2qfj_A 100 IKVGRPSNI 108 (216)
T ss_dssp CEEECCSCC
T ss_pred EEEecCCCc
Confidence 999887654
No 173
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.74 E-value=1.2e-17 Score=114.08 Aligned_cols=77 Identities=26% Similarity=0.375 Sum_probs=67.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|| ++++++|+++|++||.|.+|.+.. ++|||||+|.+.++|.+|++.|||..+.+ +
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~---------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g-----~ 101 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP---------PRNCAFVTYEKMESADQAVAELNGTQVES-----V 101 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET---------TTTEEEEECSSHHHHHHHHHHHTTCBCSS-----C
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhCCCEECC-----e
Confidence 4789999996 799999999999999999998852 34699999999999999999999999977 4
Q ss_pred cEEEEeecCCCCC
Q 031746 132 FLRLQFSRNPGPR 144 (153)
Q Consensus 132 ~l~V~~a~~~~~r 144 (153)
.|+|+|++.++..
T Consensus 102 ~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 102 QLKVNIARKQPML 114 (121)
T ss_dssp BCEEEECCSSCC-
T ss_pred EEEEEEeCCCCCC
Confidence 7999999976443
No 174
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=4.3e-18 Score=114.80 Aligned_cols=70 Identities=24% Similarity=0.300 Sum_probs=59.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHh---CCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSAL---QGYRM 123 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l---~g~~l 123 (153)
.++|||+|||+++++++|+++|++||.|. +.++.+......|+++|||||+|.+.++|++|++.| ||..+
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 68999999999999999999999999999 777666522123789999999999999999999988 66543
No 175
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.73 E-value=6e-18 Score=116.13 Aligned_cols=79 Identities=9% Similarity=0.128 Sum_probs=70.2
Q ss_pred CeEEEcCC----CCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCC----HHH----HHHHHH--HhC
Q 031746 54 STLYVEGL----PADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFEN----PAC----AATALS--ALQ 119 (153)
Q Consensus 54 ~~L~V~nL----p~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~----~~~----a~~A~~--~l~ 119 (153)
..|||+|| |+.+++++|+++|++||.|.++.++.|+ .+|.++|||||+|.+ +++ |.+|+. .||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp---~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDP---NSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECT---TTCCEEEEEEEECC------CCHHHHHHHHHHHTTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecC---CCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc
Confidence 68999999 9999999999999999999999999998 789999999999996 333 788888 789
Q ss_pred CCccCCCCCCCccEEEEeecC
Q 031746 120 GYRMDEDDPDSKFLRLQFSRN 140 (153)
Q Consensus 120 g~~l~~~~~~~r~l~V~~a~~ 140 (153)
|..|.+ ++|+|.+-+.
T Consensus 80 g~~I~G-----r~irV~ln~~ 95 (136)
T 2j8a_A 80 GCFIMG-----FKFEVILNKH 95 (136)
T ss_dssp CEEETT-----EEEEEEECCT
T ss_pred CCeecC-----cEEEEEECcc
Confidence 999987 5799998764
No 176
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.72 E-value=8.8e-18 Score=107.47 Aligned_cols=70 Identities=19% Similarity=0.311 Sum_probs=63.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCC----C-------CeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPF----V-------GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 121 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~----G-------~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~ 121 (153)
.++|||+|||+++++++|+++|++| | .|.++++..+ +|||||+|.+.++|.+|+ .|||.
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 6899999999999999999999999 8 8999888643 469999999999999999 99999
Q ss_pred ccCCCCCCCccEEEEe
Q 031746 122 RMDEDDPDSKFLRLQF 137 (153)
Q Consensus 122 ~l~~~~~~~r~l~V~~ 137 (153)
.+.+ +.|+|+.
T Consensus 76 ~~~g-----~~l~V~r 86 (87)
T 2hzc_A 76 IFQG-----QSLKIRR 86 (87)
T ss_dssp EETT-----EECEEEC
T ss_pred EECC-----eEEEEeC
Confidence 9987 4688873
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.72 E-value=4.3e-17 Score=124.86 Aligned_cols=80 Identities=23% Similarity=0.371 Sum_probs=71.8
Q ss_pred CCCeEEEcCCCCCCCHHHHH----HhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 031746 52 ASSTLYVEGLPADSTKREVA----HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 127 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~----~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~ 127 (153)
+.++|||+|||+++++++|+ ++|++||.|.+|+++. +|+++|||||+|.+.++|.+|++.|||..|.++
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~- 80 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR------SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK- 80 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC------CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc-
Confidence 37899999999999999976 8999999999998864 377889999999999999999999999999874
Q ss_pred CCCccEEEEeecCCC
Q 031746 128 PDSKFLRLQFSRNPG 142 (153)
Q Consensus 128 ~~~r~l~V~~a~~~~ 142 (153)
.|+|+|++...
T Consensus 81 ----~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 ----PMRIQYAKTDS 91 (282)
T ss_pred ----EEEEEEeccCc
Confidence 79999997643
No 178
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.71 E-value=3.1e-17 Score=117.15 Aligned_cols=77 Identities=22% Similarity=0.375 Sum_probs=68.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++++++|+++|++||.|..+ . .++.++|||||+|.+.++|.+|++.|||..+.+ +
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~----~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 164 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----S----QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG-----R 164 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----C----SSSSCCSEEEEECSSHHHHHHHHHHHTEEEETT-----E
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----c----CCCCCceEEEEEECCHHHHHHHHHHhCCCEECC-----e
Confidence 36899999999999999999999999987755 2 357889999999999999999999999999987 5
Q ss_pred cEEEEeecCC
Q 031746 132 FLRLQFSRNP 141 (153)
Q Consensus 132 ~l~V~~a~~~ 141 (153)
.|+|+|+.++
T Consensus 165 ~i~v~~a~~k 174 (175)
T 1fje_B 165 SVSLYYTGEK 174 (175)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEecCCC
Confidence 7999999854
No 179
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.70 E-value=6e-17 Score=121.15 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 52 ASSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 52 ~~~~L~V~nLp~-~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
++++|||+|||+ ++++++|+++|++||.|.+|+++.++ +|||||+|.+.++|.+|++.|||..+.++
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--------~g~afV~F~~~~~A~~Ai~~l~g~~~~g~---- 100 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--------KENALVQMADGNQAQLAMSHLNGHKLHGK---- 100 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--------SCCEEEEESCHHHHHHHHHHHTTCBCSSS----
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--------CCEEEEEECCHHHHHHHHHHhCCCeECCe----
Confidence 378999999999 99999999999999999999998653 46999999999999999999999999774
Q ss_pred ccEEEEeecCC
Q 031746 131 KFLRLQFSRNP 141 (153)
Q Consensus 131 r~l~V~~a~~~ 141 (153)
.|+|++++..
T Consensus 101 -~l~v~~a~~~ 110 (229)
T 2adc_A 101 -PIRITLSKHQ 110 (229)
T ss_dssp -BCEEECCSCC
T ss_pred -EEEEEEecCc
Confidence 7999999854
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.70 E-value=1.8e-16 Score=121.36 Aligned_cols=75 Identities=31% Similarity=0.634 Sum_probs=68.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC-CCCCCC
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD-EDDPDS 130 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~-~~~~~~ 130 (153)
+.++|||+|||+++++++|+++|++||.|.+++++.++ +|||||+|.+.++|.+|++.|||+.+. +
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~~g----- 272 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--------HDIAFVEFDNEVQAGAARDALQGFKITQN----- 272 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--------CcEEEEEeCCHHHHHHHHHHcCCcEeCCC-----
Confidence 36889999999999999999999999999999998543 369999999999999999999999998 5
Q ss_pred ccEEEEeec
Q 031746 131 KFLRLQFSR 139 (153)
Q Consensus 131 r~l~V~~a~ 139 (153)
+.|+|+|++
T Consensus 273 ~~l~v~~ak 281 (282)
T 3pgw_A 273 NAMKISFAK 281 (282)
T ss_pred CEEEEEEec
Confidence 479999987
No 181
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.70 E-value=1.2e-16 Score=106.50 Aligned_cols=82 Identities=12% Similarity=0.186 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCC-----CCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 52 ASSTLYVEGLPA-----DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 52 ~~~~L~V~nLp~-----~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
++++|+|.||.. +-++++|+++|++||.|.++.++.+.. .++.++||+||+|.+.++|.+|++.|||..+.+
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~--~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G- 83 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPG--APDDEAVRIFLEFERVESAIKAVVDLNGRYFGG- 83 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSS--CCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT-
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCC--CCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC-
Confidence 378999999962 347899999999999999999987641 236789999999999999999999999999977
Q ss_pred CCCCccEEEEeecC
Q 031746 127 DPDSKFLRLQFSRN 140 (153)
Q Consensus 127 ~~~~r~l~V~~a~~ 140 (153)
|.|+|+++..
T Consensus 84 ----r~i~v~~a~~ 93 (105)
T 2pe8_A 84 ----RVVKACFYNL 93 (105)
T ss_dssp ----EECEEEECCH
T ss_pred ----cEEEEEEcCH
Confidence 5799999863
No 182
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.70 E-value=3e-17 Score=121.44 Aligned_cols=80 Identities=15% Similarity=0.188 Sum_probs=69.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCe--EEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGY--KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i--~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
+++|||+|||+++|+++|+++|++||.| ..++++.++ +..+|||||+|.+.++|.+|+..|||+.|.+.. ..
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-----~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~-~~ 196 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-----SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN-GP 196 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-----SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS-SS
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-----CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC-CC
Confidence 6899999999999999999999999999 888887664 445689999999999999999999999998864 33
Q ss_pred ccEEEEee
Q 031746 131 KFLRLQFS 138 (153)
Q Consensus 131 r~l~V~~a 138 (153)
.++.|.|+
T Consensus 197 ~p~~vk~~ 204 (205)
T 3tyt_A 197 YPYTLKLC 204 (205)
T ss_dssp SCEECEEE
T ss_pred cceEEEec
Confidence 46777665
No 183
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.69 E-value=9.2e-17 Score=117.85 Aligned_cols=78 Identities=15% Similarity=0.197 Sum_probs=69.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++|+++|+++|++||.|..|++..+. +|.++|||||+|.+.++|.+|+..++ ..+.| +.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~----~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~G-----r~ 178 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL----HKAFKGSIFVVFDSIESAKKFVETPG-QKYKE-----TD 178 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT----TCCEEEEEEEEESSHHHHHHHHHCTT-CEETT-----EE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC----CCCcccEEEEEECCHHHHHHHHHhCC-CeECC-----EE
Confidence 4899999999999999999999999999999998764 48899999999999999999997654 57866 57
Q ss_pred EEEEeecC
Q 031746 133 LRLQFSRN 140 (153)
Q Consensus 133 l~V~~a~~ 140 (153)
|+|.+++.
T Consensus 179 l~V~~~~~ 186 (193)
T 2voo_A 179 LLILFKDD 186 (193)
T ss_dssp CEEEETTT
T ss_pred EEEEEhHH
Confidence 99998764
No 184
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=3.5e-17 Score=115.78 Aligned_cols=78 Identities=17% Similarity=0.324 Sum_probs=67.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++|+++|+++|++||.|.+++++.+. .+|+++|||||+|.+.++|.+|++. +..+.+ +.
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g-----~~ 72 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDP---ATGRSRGFGFLSFEKPSSVDEVVKT--QHILDG-----KV 72 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCT---TTSSCCSCEEEEESSTHHHHHHHHS--CCEETT-----EE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECC---CCCCccceEEEEEccHHHHHHHHhc--ccccCC-----eE
Confidence 6899999999999999999999999999999998876 5688999999999999999999984 456655 45
Q ss_pred EEEEeecC
Q 031746 133 LRLQFSRN 140 (153)
Q Consensus 133 l~V~~a~~ 140 (153)
|.|.++.+
T Consensus 73 i~v~~~~~ 80 (167)
T 2cjk_A 73 IDPKRAIP 80 (167)
T ss_dssp CCCEECCC
T ss_pred cccccccc
Confidence 77777653
No 185
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.69 E-value=5.2e-17 Score=122.80 Aligned_cols=81 Identities=21% Similarity=0.274 Sum_probs=67.6
Q ss_pred CCCeEEEcCCCCCC---------CHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Q 031746 52 ASSTLYVEGLPADS---------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR 122 (153)
Q Consensus 52 ~~~~L~V~nLp~~~---------te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~ 122 (153)
+.++|||+||+..+ ++++|+++|++||.|.+|+++.. +|||||+|.+.++|+.|++.|||..
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~---------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES---------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG---------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC---------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 36899999999998 79999999999999999999854 4699999999999999999999999
Q ss_pred cCC--C-----CCCCccEEEEeecCC
Q 031746 123 MDE--D-----DPDSKFLRLQFSRNP 141 (153)
Q Consensus 123 l~~--~-----~~~~r~l~V~~a~~~ 141 (153)
|.. . ...++.|.|.||+..
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred EeccccccccccCCCCEEEEEEccCC
Confidence 920 0 002357999999864
No 186
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.69 E-value=1e-16 Score=122.85 Aligned_cols=82 Identities=18% Similarity=0.264 Sum_probs=74.9
Q ss_pred CCeEEEcCCCCCC-CHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 53 SSTLYVEGLPADS-TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 53 ~~~L~V~nLp~~~-te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
.++|||+|||+++ ++++|+++|+.||.|..++++.+. +|.++|||||+|.+.++|.+|++.|||..+.+ +
T Consensus 184 ~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~----~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~ 254 (284)
T 3smz_A 184 SRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ----DGQLKGFAVLEYETAEMAEEAQQQADGLSLGG-----S 254 (284)
T ss_dssp CSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS----SCCEEEEEEEECSSHHHHHHHHHHHTTCEETT-----E
T ss_pred ccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC----CCCcccEEEEEeCCHHHHHHHHHHhCCCccCC-----e
Confidence 6899999999995 999999999999999999988774 58899999999999999999999999999977 5
Q ss_pred cEEEEeecCCCC
Q 031746 132 FLRLQFSRNPGP 143 (153)
Q Consensus 132 ~l~V~~a~~~~~ 143 (153)
.|+|+|+.++..
T Consensus 255 ~l~v~~a~~~~~ 266 (284)
T 3smz_A 255 HLRVSFCAPGPP 266 (284)
T ss_dssp ECEEEECCSSSC
T ss_pred EEEEEEecCCCc
Confidence 799999987544
No 187
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.67 E-value=4.1e-16 Score=113.56 Aligned_cols=78 Identities=21% Similarity=0.347 Sum_probs=69.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G-~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
+.++|||+|||.++++++|+++|++|| .|..++++.+. +|||||+|.+.++|.+|++.|||..+.+.
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~~g---- 186 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD--------RKMALIQMGSVEEAVQALIDLHNHDLGEN---- 186 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT--------SSCEEEECSSHHHHHHHHHHHTSSCCSSC----
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC--------CcEEEEEeCCHHHHHHHHHHhcCCccCCC----
Confidence 368999999999999999999999999 99999886542 46999999999999999999999999722
Q ss_pred ccEEEEeecCC
Q 031746 131 KFLRLQFSRNP 141 (153)
Q Consensus 131 r~l~V~~a~~~ 141 (153)
+.|+|+|++++
T Consensus 187 ~~l~v~~a~~~ 197 (198)
T 1qm9_A 187 HHLRVSFSKST 197 (198)
T ss_dssp CSCCEEEECCC
T ss_pred CeEEEEeeccc
Confidence 46999999853
No 188
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.67 E-value=1.1e-16 Score=123.19 Aligned_cols=82 Identities=12% Similarity=0.212 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 52 ASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 52 ~~~~L~V~nLp~~-~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
+.++|||+|||++ +++++|+++|++||.|..++++.+.. .+|.++|||||+|.+.++|.+|+ .|||..|.+
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~--~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g----- 280 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQK--EHSFNNCCAFMVFENKDSAERAL-QMNRSLLGN----- 280 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC-----CCCEEEEEEESSHHHHHHHG-GGTTEEETT-----
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCC--cCCCCceEEEEEeCCHHHHHHHH-HhcCCEECC-----
Confidence 3689999999999 99999999999999999999987641 13889999999999999999999 999999977
Q ss_pred ccEEEEeecCC
Q 031746 131 KFLRLQFSRNP 141 (153)
Q Consensus 131 r~l~V~~a~~~ 141 (153)
+.|+|+|+.++
T Consensus 281 ~~i~V~~a~~k 291 (292)
T 2ghp_A 281 REISVSLADKK 291 (292)
T ss_dssp EEEEEEECCCC
T ss_pred cEEEEEEecCC
Confidence 57999999864
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.67 E-value=3.5e-16 Score=119.86 Aligned_cols=82 Identities=26% Similarity=0.376 Sum_probs=75.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
.++|||+|||+++++++|+++|++||.|..+.++.+. .+|.++|||||+|.+.++|.+|++.|||..+.+ +.
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-----~~ 166 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSE---RTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGP-----RT 166 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-----EE
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeC---CCCccceEEEEEECCHHHHHHHHHHhCCCEeCC-----cE
Confidence 5799999999999999999999999999999998876 578999999999999999999999999999977 47
Q ss_pred EEEEeecCCC
Q 031746 133 LRLQFSRNPG 142 (153)
Q Consensus 133 l~V~~a~~~~ 142 (153)
|+|+++.++.
T Consensus 167 i~v~~a~~~~ 176 (284)
T 3smz_A 167 LYVHWTDAGQ 176 (284)
T ss_dssp CEEEECCGGG
T ss_pred EEEEECCCCC
Confidence 9999998643
No 190
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1e-15 Score=102.81 Aligned_cols=79 Identities=13% Similarity=0.174 Sum_probs=66.2
Q ss_pred CCCeEEEcCCCCCC-----------CHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 031746 52 ASSTLYVEGLPADS-----------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG 120 (153)
Q Consensus 52 ~~~~L~V~nLp~~~-----------te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g 120 (153)
++++|+|.||.... ++++|+++|++||.|.+|.+ .++ .++|||||+|.+.++|.+|++.|||
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~------~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR------HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT------CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC------CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 37899999994332 25899999999999999965 442 2678999999999999999999999
Q ss_pred CccCCCCCCCccEEEEeecCCC
Q 031746 121 YRMDEDDPDSKFLRLQFSRNPG 142 (153)
Q Consensus 121 ~~l~~~~~~~r~l~V~~a~~~~ 142 (153)
..+.+ ++|+|+|+.+..
T Consensus 87 ~~~~g-----r~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWFGG-----RQITAQAWDGTT 103 (112)
T ss_dssp CEETT-----EECEEEECCSCC
T ss_pred CEECC-----cEEEEEEeCCCC
Confidence 99977 579999998643
No 191
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.66 E-value=7.9e-16 Score=115.03 Aligned_cols=75 Identities=20% Similarity=0.337 Sum_probs=68.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC-CCCCCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD-EDDPDS 130 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G-~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~-~~~~~~ 130 (153)
.++|||+|||+++++++|+++|++|| .|..++++... +|||||+|.+.++|.+|++.|||..+. +
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~~g----- 217 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD--------RKMALIQMGSVEEAVQALIDLHNHDLGEN----- 217 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS--------TTCEEEEESSHHHHHHHHHHHTTCBSSSS-----
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC--------CcEEEEEECCHHHHHHHHHHHCCCccCCC-----
Confidence 68999999999999999999999999 99999986532 459999999999999999999999997 5
Q ss_pred ccEEEEeecC
Q 031746 131 KFLRLQFSRN 140 (153)
Q Consensus 131 r~l~V~~a~~ 140 (153)
+.|+|+|+++
T Consensus 218 ~~l~v~~a~~ 227 (229)
T 2adc_A 218 HHLRVSFSKS 227 (229)
T ss_dssp CBCEEEECSS
T ss_pred CeEEEEEecC
Confidence 4799999985
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.65 E-value=2.4e-16 Score=114.81 Aligned_cols=76 Identities=20% Similarity=0.320 Sum_probs=69.2
Q ss_pred CCeEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 53 SSTLYVEGLPA-DSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 53 ~~~L~V~nLp~-~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+++|||+|||+ ++++++|+++|++||.|.+|+++.++ +|||||+|.+.++|.+|++.|||..+.++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--------~g~afV~f~~~~~a~~A~~~l~~~~~~g~----- 69 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--------KENALVQMADGNQAQLAMSHLNGHKLHGK----- 69 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--------SSCCEEECTTTHHHHHHHHHHTTCCCSSC-----
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCeecCe-----
Confidence 58999999999 99999999999999999999887653 46999999999999999999999999774
Q ss_pred cEEEEeecCC
Q 031746 132 FLRLQFSRNP 141 (153)
Q Consensus 132 ~l~V~~a~~~ 141 (153)
.|+|+++...
T Consensus 70 ~l~v~~a~~~ 79 (198)
T 1qm9_A 70 PIRITLSKHQ 79 (198)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEecCC
Confidence 6999999754
No 193
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.64 E-value=4.6e-17 Score=116.26 Aligned_cols=82 Identities=18% Similarity=0.316 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCC
Q 031746 51 DASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDS 130 (153)
Q Consensus 51 ~~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~ 130 (153)
.+.++|||+|||+++++++|+++|++||.+..+. +.+. .+|+++|||||+|.+.++|.+|+ .|||..+.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~-~~~~---~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----- 80 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLA-VVDV---RTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFG----- 80 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCC-CCEE---EEETTTTEEEEEESSHHHHHHHH-HGGGEEETT-----
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEE-EEEC---CCCccccEEEEEECCHHHHHHHH-hcCCCEeCC-----
Confidence 3468999999999999999999999999876522 2222 35778899999999999999999 599999987
Q ss_pred ccEEEEeecCCC
Q 031746 131 KFLRLQFSRNPG 142 (153)
Q Consensus 131 r~l~V~~a~~~~ 142 (153)
+.|+|+++....
T Consensus 81 ~~l~v~~~~~~~ 92 (175)
T 1fje_B 81 NEIKLEKPKGRD 92 (175)
T ss_dssp EEEEEECCCCSS
T ss_pred eEEEEecCCCcc
Confidence 479999998643
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.63 E-value=1.4e-15 Score=115.75 Aligned_cols=83 Identities=16% Similarity=0.150 Sum_probs=71.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCC-CccCCCCCCCc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG-YRMDEDDPDSK 131 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g-~~l~~~~~~~r 131 (153)
.++|||+|||+.+|+++|+++|++||.|..+.++.+. +|+++|||||+|.+.++|.+|+..||+ ..+... .++
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~----~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~--~~r 169 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD----RGRATGKGFVEFAAKPPARKALERCGDGAFLLTT--TPR 169 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET----TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSS--SCC
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC----CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecC--CCc
Confidence 5799999999999999999999999999999998874 588999999999999999999999955 444422 246
Q ss_pred cEEEEeecCC
Q 031746 132 FLRLQFSRNP 141 (153)
Q Consensus 132 ~l~V~~a~~~ 141 (153)
+|.|+++...
T Consensus 170 ~i~v~~~~~~ 179 (261)
T 3sde_A 170 PVIVEPMEQF 179 (261)
T ss_dssp BCEEEECCCE
T ss_pred eEEEeecccc
Confidence 8999998754
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.63 E-value=1.2e-15 Score=116.22 Aligned_cols=75 Identities=24% Similarity=0.385 Sum_probs=67.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
+.++|||+|||+++|+++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|+..|||..+.+ +
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---------kg~afV~f~~~~~A~~A~~~l~g~~i~g-----~ 86 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD---------RGFGFIRLESRTLAEIAKAELDGTILKS-----R 86 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT---------TTEEEEECSSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC---------CcEEEEEECCHHHHHHHHHHcCCcEECC-----c
Confidence 3689999999999999999999999999999988533 4699999999999999999999999977 4
Q ss_pred cEEEEeecC
Q 031746 132 FLRLQFSRN 140 (153)
Q Consensus 132 ~l~V~~a~~ 140 (153)
.|+|.++.+
T Consensus 87 ~l~v~~a~~ 95 (261)
T 3sde_A 87 PLRIRFATH 95 (261)
T ss_dssp ECEEEECCC
T ss_pred eeEeeeccc
Confidence 799999874
No 196
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.60 E-value=1.4e-15 Score=110.18 Aligned_cols=74 Identities=18% Similarity=0.314 Sum_probs=63.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCC----C-------CeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPF----V-------GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 121 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~----G-------~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~ 121 (153)
.++|||+|||+++|+++|+++|++| | .|.++.+ +.++|||||+|.+.++|.+|+ .|||.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~---------~~~~g~afV~F~~~~~A~~Al-~l~g~ 73 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI---------NQDKNFAFLEFRSVDETTQAM-AFDGI 73 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE---------ETTTTEEEEEESCSHHHHHHG-GGTTE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe---------cCCCCEEEEEeCCHHHHHHHH-HhcCC
Confidence 6899999999999999999999999 4 5555544 334679999999999999999 89999
Q ss_pred ccCCCCCCCccEEEEeecCC
Q 031746 122 RMDEDDPDSKFLRLQFSRNP 141 (153)
Q Consensus 122 ~l~~~~~~~r~l~V~~a~~~ 141 (153)
.+.+ +.|+|+++...
T Consensus 74 ~~~g-----~~i~v~~~~~~ 88 (198)
T 2yh0_A 74 IFQG-----QSLKIRRPHDY 88 (198)
T ss_dssp EETT-----EEEEEECCCCC
T ss_pred EEcC-----ceEEEeCCCCC
Confidence 9977 47999998754
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.60 E-value=1.6e-15 Score=116.55 Aligned_cols=80 Identities=16% Similarity=0.245 Sum_probs=68.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFV-GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSK 131 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G-~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r 131 (153)
.++|||+|||+++++++|+++|++|| .|..+.++.+. .|.++|||||+|.+.++|.+|++.|||..+.+ +
T Consensus 117 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~ 187 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR----FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEG-----Y 187 (292)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-----------CCEEEEECSSHHHHHHHHHHHTTCEETT-----E
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC----CCCcceEEEEEECCHHHHHHHHHHhCCCEeCC-----c
Confidence 68999999999999999999999999 99999998765 37788999999999999999999999999977 4
Q ss_pred cEEEEeecCC
Q 031746 132 FLRLQFSRNP 141 (153)
Q Consensus 132 ~l~V~~a~~~ 141 (153)
.|+|.++.+.
T Consensus 188 ~l~v~~a~~~ 197 (292)
T 2ghp_A 188 TLVTKVSNPL 197 (292)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEECCCC
Confidence 7999998854
No 198
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.60 E-value=2.3e-15 Score=106.79 Aligned_cols=74 Identities=18% Similarity=0.289 Sum_probs=64.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCC----C-------CeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPF----V-------GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 121 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~----G-------~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~ 121 (153)
.++|||+|||+++|+++|+++|++| | .|.++.+.. ++|||||+|.+.++|.+|+ .|||.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~---------~~g~afV~f~~~~~A~~A~-~~~~~ 73 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---------DKNFAFLEFRSVDETTQAM-AFDGI 73 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET---------TTTEEEEEESSHHHHHHHG-GGTTC
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC---------CCCEEEEEeCCHHHHHHHH-HhCCc
Confidence 6899999999999999999999999 6 667666542 3579999999999999999 99999
Q ss_pred ccCCCCCCCccEEEEeecCC
Q 031746 122 RMDEDDPDSKFLRLQFSRNP 141 (153)
Q Consensus 122 ~l~~~~~~~r~l~V~~a~~~ 141 (153)
.+.+ +.|+|+++...
T Consensus 74 ~~~g-----~~i~v~~~~~~ 88 (172)
T 2g4b_A 74 IFQG-----QSLKIRRPHDY 88 (172)
T ss_dssp EETT-----EECEEECCSSC
T ss_pred EecC-----ceeeecCCccc
Confidence 9977 47999988754
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.59 E-value=4.4e-16 Score=103.60 Aligned_cols=73 Identities=15% Similarity=0.227 Sum_probs=63.2
Q ss_pred EcCCCCCCCHHHHHHhh------------cCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 031746 58 VEGLPADSTKREVAHIF------------RPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 125 (153)
Q Consensus 58 V~nLp~~~te~~l~~~F------------~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~ 125 (153)
+.+||+.+++++|+++| ++||.|.+|.++.+. .++++|||||+|.+.++|.+|++.|||..+.+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~----~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL----GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS----SSSSEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC----CCCccEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 56788888888887776 999999999998764 47899999999999999999999999999987
Q ss_pred CCCCCccEEEEeec
Q 031746 126 DDPDSKFLRLQFSR 139 (153)
Q Consensus 126 ~~~~~r~l~V~~a~ 139 (153)
|.|+|+|+.
T Consensus 96 -----r~i~v~~sp 104 (104)
T 1jmt_A 96 -----QPIHAELSP 104 (104)
T ss_dssp -----EECCEEECC
T ss_pred -----EEEEEEEcC
Confidence 579999873
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.59 E-value=4.1e-15 Score=99.06 Aligned_cols=82 Identities=12% Similarity=0.152 Sum_probs=68.2
Q ss_pred CCeEEEcCC--CCCCC--------HHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Q 031746 53 SSTLYVEGL--PADST--------KREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYR 122 (153)
Q Consensus 53 ~~~L~V~nL--p~~~t--------e~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~ 122 (153)
++.|.+.|+ |.++. +++|++.|++||.|.++.+..+... ..+.++||+||+|.+.++|.+|++.|||..
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~-~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDG-VEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTT-BCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCC-CCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 688999998 44443 3689999999999999999876521 124678999999999999999999999999
Q ss_pred cCCCCCCCccEEEEeecC
Q 031746 123 MDEDDPDSKFLRLQFSRN 140 (153)
Q Consensus 123 l~~~~~~~r~l~V~~a~~ 140 (153)
+.+ |+|+|+|...
T Consensus 84 f~G-----R~i~v~~~~~ 96 (105)
T 3v4m_A 84 FAN-----RVVVTKYCDP 96 (105)
T ss_dssp ETT-----EECEEEEECH
T ss_pred eCC-----CEEEEEEeCH
Confidence 977 5799999753
No 201
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.59 E-value=3.1e-15 Score=118.44 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=65.3
Q ss_pred CCCCeEEEcC--CCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031746 51 DASSTLYVEG--LPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 128 (153)
Q Consensus 51 ~~~~~L~V~n--Lp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~ 128 (153)
.++++|||+| |++.+||++|+++|++||.|.+|.+.. .||||||+|.+.++|++|++.|||..+.+...
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3478999999 589999999999999999999876642 24799999999999999999999999954311
Q ss_pred CCccEEEEeec
Q 031746 129 DSKFLRLQFSR 139 (153)
Q Consensus 129 ~~r~l~V~~a~ 139 (153)
.+.+|.|.|+.
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 11258888874
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2e-14 Score=94.97 Aligned_cols=68 Identities=12% Similarity=0.160 Sum_probs=56.8
Q ss_pred CCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccEEEEeecCCC
Q 031746 63 ADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSRNPG 142 (153)
Q Consensus 63 ~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~V~~a~~~~ 142 (153)
.++++++|+++|++||.|.+|.++ ++++|||||+|.+.++|+.|++.+++ +.+ ++|+|+|++.++
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~--------~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g-----~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS--------SKKPGTAVVEFATVKAAELAVQNEVG--LVD-----NPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE--------SSSSSEEEEEESCHHHHHHHHHTCCB--CSS-----SBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc--------cCCCCEEEEEECCHHHHHHHHHhcCC--CCC-----CeEEEEEccCCC
Confidence 568999999999999999999887 23568999999999999999988665 333 479999998765
Q ss_pred CCC
Q 031746 143 PRS 145 (153)
Q Consensus 143 ~r~ 145 (153)
...
T Consensus 92 ~~~ 94 (100)
T 2d9o_A 92 QDA 94 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.56 E-value=1.5e-14 Score=98.26 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=68.8
Q ss_pred CCeEEEcCCC--CC---CCHHHHHHhhcCCCCeEEEEEeecCCc-cCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 53 SSTLYVEGLP--AD---STKREVAHIFRPFVGYKEVRLVIKESK-LRGGDPLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 53 ~~~L~V~nLp--~~---~te~~l~~~F~~~G~i~~~~~~~~~~~-~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
+++|++.|+- .+ --+++|++.|++||.|.+|.|+.+... ..++.++||+||+|.+.++|.+|++.|||..+.+
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G- 98 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG- 98 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT-
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC-
Confidence 6899999983 22 236899999999999999999887521 1245678999999999999999999999999977
Q ss_pred CCCCccEEEEeec
Q 031746 127 DPDSKFLRLQFSR 139 (153)
Q Consensus 127 ~~~~r~l~V~~a~ 139 (153)
|.|+|+|+.
T Consensus 99 ----R~i~v~~~~ 107 (118)
T 3ue2_A 99 ----RKVVAEVYD 107 (118)
T ss_dssp ----EECEEEEEC
T ss_pred ----cEEEEEEcC
Confidence 579999985
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.44 E-value=6.4e-13 Score=89.70 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=62.6
Q ss_pred CCCeEEEcCCCC--CC--------CHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 031746 52 ASSTLYVEGLPA--DS--------TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 121 (153)
Q Consensus 52 ~~~~L~V~nLp~--~~--------te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~ 121 (153)
++++|.+.|+=. +. -+++|++.|++||.|.+|.+..+. ++||+||+|.+.++|.+|++.|||.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-------~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-------AQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-------TTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-------CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 368899999732 21 134789999999999999885432 4789999999999999999999999
Q ss_pred ccCCCCCCCccEEEEeec
Q 031746 122 RMDEDDPDSKFLRLQFSR 139 (153)
Q Consensus 122 ~l~~~~~~~r~l~V~~a~ 139 (153)
.+.| |.|+|+|+.
T Consensus 79 ~f~G-----R~i~v~~~~ 91 (114)
T 3s6e_A 79 WFAG-----KMITAAYVP 91 (114)
T ss_dssp EETT-----EECEEEEEC
T ss_pred EECC-----EEEEEEEEc
Confidence 9977 579999985
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=2.2e-11 Score=82.78 Aligned_cols=73 Identities=11% Similarity=0.105 Sum_probs=62.9
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCC-HHHHHHHHHHhC--CCccCCCC
Q 031746 52 ASSTLYVEGLPAD-STKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFEN-PACAATALSALQ--GYRMDEDD 127 (153)
Q Consensus 52 ~~~~L~V~nLp~~-~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~-~~~a~~A~~~l~--g~~l~~~~ 127 (153)
.++.|||+||+++ ++.++|+++|++||.|..|.+..+. . .|||.|.+ ..+|..|+..|| +..|.+.
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~---~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~- 86 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA---K------EGIILFKEKAKEALGKAKDANNGNLQLRNK- 86 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC---S------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS-
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC---C------EEEEEECCChHHHHHHHHHhhcCCcEEeCc-
Confidence 3799999999999 9999999999999999999998765 1 69999999 899999999995 6777664
Q ss_pred CCCccEEEEee
Q 031746 128 PDSKFLRLQFS 138 (153)
Q Consensus 128 ~~~r~l~V~~a 138 (153)
.++++..
T Consensus 87 ----~~~~evL 93 (121)
T 1owx_A 87 ----EVTWEVL 93 (121)
T ss_dssp ----SEEEEEC
T ss_pred ----EEEEEEC
Confidence 4777654
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1.9e-11 Score=78.71 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=60.4
Q ss_pred CCeEEEcCCC----CCCCH----HHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC
Q 031746 53 SSTLYVEGLP----ADSTK----REVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMD 124 (153)
Q Consensus 53 ~~~L~V~nLp----~~~te----~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~ 124 (153)
..||+|...+ .+..+ .+|.+.|++||.|..++++.++ +||+|.+.++|.+|++ |||..+.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-----------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-----------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-----------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-----------EEEEECChHHHHHHHh-cCCeEeC
Confidence 4788888776 23333 4788999999999999998764 8999999999999997 9999998
Q ss_pred CCCCCCccEEEEeecCC
Q 031746 125 EDDPDSKFLRLQFSRNP 141 (153)
Q Consensus 125 ~~~~~~r~l~V~~a~~~ 141 (153)
+ |.|+|+++++.
T Consensus 75 G-----r~LkV~lkt~d 86 (91)
T 2dnr_A 75 N-----RTITIALKSPS 86 (91)
T ss_dssp T-----EEEEEEECCCS
T ss_pred C-----eEEEEEeCCCC
Confidence 8 57999998853
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.07 E-value=7.1e-10 Score=82.14 Aligned_cols=71 Identities=17% Similarity=0.220 Sum_probs=60.2
Q ss_pred CCCHHHHHHhhcCCCCeEEEEEeecCC-ccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccEEEEeec
Q 031746 64 DSTKREVAHIFRPFVGYKEVRLVIKES-KLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSR 139 (153)
Q Consensus 64 ~~te~~l~~~F~~~G~i~~~~~~~~~~-~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~V~~a~ 139 (153)
+-.+++|++.|++||.|.++.+..+.. ...++.++|++||+|.+.++|.+|++.|||..+.| |.|.|+|..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g-----r~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG-----RKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS-----SBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC-----eEEEEEEcC
Confidence 345678999999999999999875541 12356899999999999999999999999999987 579999975
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=3.6e-10 Score=73.18 Aligned_cols=70 Identities=14% Similarity=0.232 Sum_probs=58.9
Q ss_pred CCeEEEcCCCCC------CCH---HHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Q 031746 53 SSTLYVEGLPAD------STK---REVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRM 123 (153)
Q Consensus 53 ~~~L~V~nLp~~------~te---~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l 123 (153)
..||+|..++.. ..+ .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|++ |||.++
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-----------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-----------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-----------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-----------EEEEEcChHHHHHHHh-cCCeee
Confidence 478999988743 332 4688999999999999998774 9999999999999997 999999
Q ss_pred CCCCCCCccEEEEeec
Q 031746 124 DEDDPDSKFLRLQFSR 139 (153)
Q Consensus 124 ~~~~~~~r~l~V~~a~ 139 (153)
.+ |.|+|++-.
T Consensus 83 ~G-----r~L~V~~k~ 93 (95)
T 1ufw_A 83 KG-----RAVKISGPS 93 (95)
T ss_dssp TT-----EEEEEECCC
T ss_pred CC-----eEEEEeccC
Confidence 88 579998754
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.61 E-value=1.4e-07 Score=62.40 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=63.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCC-----CCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPF-----VGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDD 127 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~-----G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~ 127 (153)
.++|-+-|||..+++..|+.|++.+ |.|+.+.+..+. . -|+|+|.|...|.+|.-+|||.+|.+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH---~------GAivef~d~~~AgKasLaL~G~ef~g-- 89 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF---N------GAIIIFRDSKFAAKMLMILNGSQFQG-- 89 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT---T------EEEEECSCHHHHHHHHHHHSSEEETT--
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC---C------ceEEEEccchhhHHHHhhcCCeeecC--
Confidence 5889999999999999999999999 999999888774 1 49999999999999999999999976
Q ss_pred CCCccEEEE
Q 031746 128 PDSKFLRLQ 136 (153)
Q Consensus 128 ~~~r~l~V~ 136 (153)
|+|++.
T Consensus 90 ---r~Lr~g 95 (117)
T 2l9w_A 90 ---KVIRSG 95 (117)
T ss_dssp ---EEEEEE
T ss_pred ---eEEEec
Confidence 578874
No 210
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.18 E-value=1.2e-05 Score=51.99 Aligned_cols=55 Identities=16% Similarity=0.335 Sum_probs=46.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 119 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~ 119 (153)
...++| ..|.++...||.++|+.||.|. |+.+.+. -|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT----------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT----------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT----------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC----------eEEEEecCHHHHHHHHHhcc
Confidence 466777 9999999999999999999654 6666554 69999999999999998764
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.11 E-value=4.6e-05 Score=48.93 Aligned_cols=86 Identities=14% Similarity=0.218 Sum_probs=68.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccE
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFL 133 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l 133 (153)
.+|.|-+||+.+||+++.+.++....+.....+..+... .-..-.-|||.|.+.+++..-.+.++|+.+.+.+....+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~-~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSL-YPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSS-TTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCC-CCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 478899999999999999999999887766666655211 1123357999999999999999999999998876544556
Q ss_pred EEEeecC
Q 031746 134 RLQFSRN 140 (153)
Q Consensus 134 ~V~~a~~ 140 (153)
.|++|..
T Consensus 81 ~VE~AP~ 87 (91)
T 1uw4_A 81 IVEFAPF 87 (91)
T ss_dssp EEEECSS
T ss_pred EEEEcCC
Confidence 7888764
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.97 E-value=1.3e-05 Score=52.63 Aligned_cols=74 Identities=19% Similarity=0.195 Sum_probs=61.0
Q ss_pred CeEEEcCCCCCC-CH----HHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031746 54 STLYVEGLPADS-TK----REVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 128 (153)
Q Consensus 54 ~~L~V~nLp~~~-te----~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~ 128 (153)
++|+|.||+.++ +. +.++++|.+|+.+........-. =.-|.|.+.++|.+|-..||+..+.|.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR---------Rirv~F~~~~~A~~AR~~Lh~~~f~g~-- 74 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK---------RVRINFSNPLSAADARLRLHKTEFLGK-- 74 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT---------EEEEECSSTTHHHHHHHTSTTSEETTE--
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce---------EEEEEeCChHHHHHHHHHhccceecCc--
Confidence 789999999765 22 46799999999988877665431 368999999999999999999999885
Q ss_pred CCccEEEEeecCC
Q 031746 129 DSKFLRLQFSRNP 141 (153)
Q Consensus 129 ~~r~l~V~~a~~~ 141 (153)
.|+|-|+.+.
T Consensus 75 ---~~r~YFgq~~ 84 (104)
T 1wey_A 75 ---EMKLYFAQTL 84 (104)
T ss_dssp ---ECEEECCCCS
T ss_pred ---eeEEEecCCC
Confidence 6999998743
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=0.0002 Score=46.80 Aligned_cols=61 Identities=16% Similarity=0.116 Sum_probs=47.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcC-----CCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRP-----FVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDE 125 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~-----~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~ 125 (153)
..+|.|.|||+++.++.|+-+|+. =|.|..+.... . -|+|+|.+...|++.++. .-+.|.+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-~----------~AvItF~d~~va~rVL~k-~~H~L~~ 73 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-C----------GGVLTFREPADAERVLAQ-ADHELHG 73 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-T----------EEEEEESSHHHHHHHHTC-SCCBSSS
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-C----------cEEEEEcChHHHHHHhcC-CcceecC
Confidence 578999999999999999999997 25667766643 1 599999999999988743 2345544
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.67 E-value=7.4e-05 Score=48.47 Aligned_cols=54 Identities=17% Similarity=0.329 Sum_probs=45.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 119 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~ 119 (153)
..++| ..|.++...||.++|+.||. ..|+.+.+. -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT----------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT----------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT----------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC----------eEEEEecCHHHHHHHHHhcc
Confidence 45666 99999999999999999994 446666554 69999999999999998774
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.55 E-value=0.00034 Score=45.23 Aligned_cols=87 Identities=16% Similarity=0.214 Sum_probs=63.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCcc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKF 132 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~ 132 (153)
+-+|.|-.||+.+||+++.+.++..-.+.....+..+... ....-.-|||.|.+.++...-.+.++|+.+.+.+...-+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~-~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSL-YPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSS-CCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCC-CCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 4579999999999999999888876554333333222110 011223599999999999999999999999887655556
Q ss_pred EEEEeecC
Q 031746 133 LRLQFSRN 140 (153)
Q Consensus 133 l~V~~a~~ 140 (153)
-.|++|..
T Consensus 88 a~VE~APy 95 (97)
T 2l08_A 88 AVVEFAPF 95 (97)
T ss_dssp EEEEECCC
T ss_pred eEEEecCC
Confidence 77888764
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.85 E-value=0.0054 Score=41.03 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=50.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDED 126 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~ 126 (153)
.+.|.|-..|+.. -..+-+.|++||.|.+.... . ++ .+-.|.|.+..+|++|| ..||..+.+.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~--~----~~---NWihI~Y~s~~~A~rAL-~kNG~ii~g~ 86 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS--N----TG---NWMHIRYQSKLQARKAL-SKDGRIFGES 86 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC--S----SS---SEEEEEESSHHHHHHHH-TTTTCEETTT
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC--C----CC---CeEEEEeCCHHHHHHHH-HhCCeEecCC
Confidence 4678888888885 56678899999999987662 1 11 28999999999999999 6799999753
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.77 E-value=0.00059 Score=55.79 Aligned_cols=54 Identities=11% Similarity=0.176 Sum_probs=40.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHH
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 115 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~ 115 (153)
.+.|||. .|..+++.+|.+.|++||.|.++.+..++ | -|+.|||.+.+++..++
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g---~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----G---LYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----S---EEEEEECC---CCHHHH
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----C---eEEEEEeCCHHHHHHHH
Confidence 4789997 79999999999999999999988776543 2 39999999999888664
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.61 E-value=0.0019 Score=44.53 Aligned_cols=34 Identities=9% Similarity=0.010 Sum_probs=27.6
Q ss_pred EEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Q 031746 83 VRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGY 121 (153)
Q Consensus 83 ~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~ 121 (153)
+.++.+. .+++||+||+|.+.++|++|++.+++.
T Consensus 3 ~kl~ln~-----~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 3 YKLILNG-----KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEC-----SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEecC-----ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 4555543 468899999999999999999888764
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.80 E-value=0.0033 Score=43.08 Aligned_cols=41 Identities=10% Similarity=-0.032 Sum_probs=36.2
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHh-CCCccCCCCCCCccEEEEeecC
Q 031746 94 GGDPLILCFVDFENPACAATALSAL-QGYRMDEDDPDSKFLRLQFSRN 140 (153)
Q Consensus 94 ~g~~kg~~fV~f~~~~~a~~A~~~l-~g~~l~~~~~~~r~l~V~~a~~ 140 (153)
+.+.+|+++|+|.+.++|++|++.| ||..+++ .+++.++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G------~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG------EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC------EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC------ceecccccC
Confidence 4567899999999999999999999 9999977 399998764
No 220
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.19 E-value=0.069 Score=44.08 Aligned_cols=56 Identities=16% Similarity=0.312 Sum_probs=45.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQG 120 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g 120 (153)
...++|+ +|..+...+|.++|+.||.+ +|+.+.+. .|||.|.+.+.|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt----------~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT----------SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS----------EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC----------eEEEEECCHHHHHHHHHHHHh
Confidence 3567777 88899999999999999964 45554443 799999999999999998863
No 221
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.21 E-value=0.036 Score=37.64 Aligned_cols=78 Identities=21% Similarity=0.227 Sum_probs=49.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeEEE-EEeec---------CCccCCC-CcceEEEEEeCCHHHHHHHHHHhCCC
Q 031746 53 SSTLYVEGLPADSTKREVAHIFRPFVGYKEV-RLVIK---------ESKLRGG-DPLILCFVDFENPACAATALSALQGY 121 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~-~~~~~---------~~~~~~g-~~kg~~fV~f~~~~~a~~A~~~l~g~ 121 (153)
...|.|-..|++.+. .+-+.|++||.|++- ..... +.+...+ ....+-.|.|++..+|.+|| ..||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 355667677766554 466789999998762 11100 0000000 01348899999999999999 79999
Q ss_pred ccCCCCCCCccEEEEe
Q 031746 122 RMDEDDPDSKFLRLQF 137 (153)
Q Consensus 122 ~l~~~~~~~r~l~V~~ 137 (153)
.+.+. .|-|..
T Consensus 85 ii~G~-----mIGV~P 95 (132)
T 3p3d_A 85 VFNGV-----LLGVIP 95 (132)
T ss_dssp EETTE-----ECEEEE
T ss_pred EeCcE-----EEEEEE
Confidence 99773 455544
No 222
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=90.50 E-value=0.0073 Score=39.55 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=0.0
Q ss_pred CCeEEEcCCCCCCCHHH
Q 031746 53 SSTLYVEGLPADSTKRE 69 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~ 69 (153)
..+|||+|||+++|++.
T Consensus 97 ~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 97 FTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -----------------
T ss_pred CCceEeCCCCCCccccc
Confidence 46799999999999874
No 223
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=52.65 E-value=10 Score=28.39 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=25.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEe
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 86 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~ 86 (153)
.-+.|+|||+.++..-|.+++.. ..+....++
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 45789999999999999999987 655544443
No 224
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=51.79 E-value=33 Score=19.88 Aligned_cols=68 Identities=12% Similarity=0.224 Sum_probs=39.9
Q ss_pred eEEEcC-CCCCCCHHHHHHhhcCCCCe-----EEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 031746 55 TLYVEG-LPADSTKREVAHIFRPFVGY-----KEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDP 128 (153)
Q Consensus 55 ~L~V~n-Lp~~~te~~l~~~F~~~G~i-----~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~ 128 (153)
+|||.. --..++..+|..++..-+.+ -.+++. +. |.||+-.. +.+..+++.|++..+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-d~----------~s~v~v~~-~~~~~~~~~l~~~~i~g~-- 67 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-DN----------ASYVEILN-GKGPHVLKVMKNTTVKGK-- 67 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-SS----------CEEEEECT-TCHHHHHHHHTTCCC-----
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-CC----------cEEEEECH-HHHHHHHHHhccccCcCc--
Confidence 455531 12346667777777655443 345553 22 79999876 567889999999999875
Q ss_pred CCccEEEEeec
Q 031746 129 DSKFLRLQFSR 139 (153)
Q Consensus 129 ~~r~l~V~~a~ 139 (153)
.++|+.++
T Consensus 68 ---~~~v~~~~ 75 (76)
T 2g0c_A 68 ---QLKVNKAN 75 (76)
T ss_dssp ---CCCEEECC
T ss_pred ---eEEEEECC
Confidence 47777654
No 225
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=49.64 E-value=5.8 Score=29.81 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=26.2
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEee
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRLVI 87 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~ 87 (153)
....|+|||+.++..-|.+++.....+..+.++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 4578999999999999999998655555554443
No 226
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=44.71 E-value=15 Score=27.00 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=24.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEE
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFVGYKEVRL 85 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~ 85 (153)
..+.|+|||+.++...|.+++.....+..+.+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~ 122 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHF 122 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEE
Confidence 35789999999999999988876444444433
No 227
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=40.18 E-value=6.5 Score=29.09 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=25.1
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEe
Q 031746 55 TLYVEGLPADSTKREVAHIFRPFVGYKEVRLV 86 (153)
Q Consensus 55 ~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~ 86 (153)
-..|+|||+.++...|..+++....+..+.++
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 34899999999999999999876666554444
No 228
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=40.17 E-value=11 Score=29.47 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=19.2
Q ss_pred eEEEcCCCCCCCHHHHHHhhcC
Q 031746 55 TLYVEGLPADSTKREVAHIFRP 76 (153)
Q Consensus 55 ~L~V~nLp~~~te~~l~~~F~~ 76 (153)
.+.|+|||+.++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999988888874
No 229
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=39.92 E-value=47 Score=20.46 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=31.0
Q ss_pred CeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccEEEEeec
Q 031746 79 GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSR 139 (153)
Q Consensus 79 ~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~V~~a~ 139 (153)
.|.++++..-. ..|+.++||-|.|++.- .+++.++-..+ .-|.|.+.+
T Consensus 5 ~iTdVri~~~~---~~g~lka~asVt~dd~f-------vI~~ikVieg~---~GlFVaMPs 52 (87)
T 2i9x_A 5 KVTDVRLRKIQ---TDGRMKALVSITLDEAF-------VIHDLRVIEGN---SGLFVAMPS 52 (87)
T ss_dssp CEEEEEEEECC---SSSSEEEEEEEEETTTE-------EEEEEEEEEET---TEEEEECCE
T ss_pred EEEEEEEEEcC---CCCCEEEEEEEEECCEE-------EEeeEEEEECC---CceEEECCC
Confidence 57788887664 56889999999998632 45554443321 236666544
No 230
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=37.67 E-value=88 Score=21.82 Aligned_cols=48 Identities=17% Similarity=0.199 Sum_probs=32.9
Q ss_pred eEEEcCCCC-C--------CCHHHHHHhh--cCCCCeEEEEEeecCCccCCCCcceEEEEEeCCH
Q 031746 55 TLYVEGLPA-D--------STKREVAHIF--RPFVGYKEVRLVIKESKLRGGDPLILCFVDFENP 108 (153)
Q Consensus 55 ~L~V~nLp~-~--------~te~~l~~~F--~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~ 108 (153)
+..|-|+|. . ....+|++.| ..|.++. ++.+..... ..|++.|+|.+-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-----h~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-----HSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-----EEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-----CceeEEEEecCC
Confidence 566677776 1 4457899977 9998876 445555421 457999999873
No 231
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=36.23 E-value=83 Score=20.00 Aligned_cols=66 Identities=12% Similarity=0.064 Sum_probs=45.8
Q ss_pred cCCCCCCCHHHHH-HhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccEEEEe
Q 031746 59 EGLPADSTKREVA-HIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQF 137 (153)
Q Consensus 59 ~nLp~~~te~~l~-~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~V~~ 137 (153)
=.++.-+.-++|. ++-..||.-.++++.... ..|-..+.++.++|++.|+-..-. +.|+|-+
T Consensus 22 i~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~E-----------llIpl~sQeDLDkaIellDrss~~------kSLrIlL 84 (103)
T 2cu1_A 22 LQFPRPVKLEDLRSKAKIAFGQSMDLHYTNNE-----------LVIPLTTQDDLDKAVELLDRSIHM------KSLKILL 84 (103)
T ss_dssp EEEESSCCHHHHHHHHHHHHSSCEEEEECSSS-----------SCEECCSHHHHHHHHHHHHHCSSC------CSEEEEE
T ss_pred EeccCCccHHHHHHHHHHHhCCeeeEEEecce-----------EEEeccCHHHHHHHHHHHccCCcc------cceEEEE
Confidence 3456677777765 344456777777776332 679999999999999998866332 3588877
Q ss_pred ecCC
Q 031746 138 SRNP 141 (153)
Q Consensus 138 a~~~ 141 (153)
..++
T Consensus 85 ~~~~ 88 (103)
T 2cu1_A 85 VING 88 (103)
T ss_dssp EECC
T ss_pred ecCC
Confidence 6654
No 232
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=36.18 E-value=9.6 Score=25.92 Aligned_cols=28 Identities=7% Similarity=0.017 Sum_probs=15.1
Q ss_pred HHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeC
Q 031746 68 REVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFE 106 (153)
Q Consensus 68 ~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~ 106 (153)
+|+.++|...|.|. .+.. .|||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vk---wfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICK---WFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEE---EEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEE---EEEC--------CCCeeEEeeC
Confidence 45667777777644 2222 2469999875
No 233
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=35.72 E-value=16 Score=26.78 Aligned_cols=25 Identities=12% Similarity=0.002 Sum_probs=21.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCC
Q 031746 54 STLYVEGLPADSTKREVAHIFRPFV 78 (153)
Q Consensus 54 ~~L~V~nLp~~~te~~l~~~F~~~G 78 (153)
..+.|+|+|+.++..-|.+++....
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~ 120 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKD 120 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGG
T ss_pred CcEEEEECchhccHHHHHHHHhcCC
Confidence 3478999999999999999988643
No 234
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=34.96 E-value=26 Score=21.57 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=18.9
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCC
Q 031746 97 PLILCFVDFENPACAATALSALQG 120 (153)
Q Consensus 97 ~kg~~fV~f~~~~~a~~A~~~l~g 120 (153)
.+||-||+++..++...+++...|
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTT
T ss_pred cCCEEEEEEecchhHHHHHHCCCC
Confidence 567999999998888777765544
No 235
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=34.62 E-value=62 Score=20.68 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=30.6
Q ss_pred CeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccEEEEeec
Q 031746 79 GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSR 139 (153)
Q Consensus 79 ~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~V~~a~ 139 (153)
.|.+|++..-. ..|+.++||-|.|++.- .+++.++-..+ .-|.|.+.+
T Consensus 5 ~iTdVri~~i~---~~gklkA~aSVt~dd~F-------vI~dIKViEg~---~GlFVaMPS 52 (105)
T 2i9z_A 5 KVTDVRLRKIQ---TDGRMKALVSITLDEAF-------VIHDLRVIEGN---SGLFVAMPS 52 (105)
T ss_dssp CEEEEEEEECC---SCSSEEEEEEEEETTTE-------EEEEEEEEEET---TEEEEECCE
T ss_pred EEEEEEEEEeC---CCCCEEEEEEEEECCEE-------EEeeEEEEECC---CceEEECCC
Confidence 56777777664 56889999999998632 45554443321 236666544
No 236
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=34.56 E-value=62 Score=20.49 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=30.9
Q ss_pred CeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCCCCCCccEEEEeec
Q 031746 79 GYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQGYRMDEDDPDSKFLRLQFSR 139 (153)
Q Consensus 79 ~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~g~~l~~~~~~~r~l~V~~a~ 139 (153)
.|.++++..-. ..|+.++||-|.|++.- .+++.++-..+ .-|.|.+.+
T Consensus 5 ~ITdVri~~i~---~~gklkA~aSVt~dd~f-------vI~dIkVieg~---~GlFVaMPS 52 (100)
T 2ia9_A 5 EVTDVRLRRVN---TDGRMRAIASITLDHEF-------VVHDIRVIDGN---NGLFVAMPS 52 (100)
T ss_dssp CEEEEEEEECC---SSSSEEEEEEEEETTTE-------EEEEEEEEEET---TEEEEECCE
T ss_pred EEEEEEEEEcC---CCCCEEEEEEEEECCEE-------EEeeEEEEECC---CceEEECCC
Confidence 57788887665 45889999999998632 45554443321 236666544
No 237
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=33.86 E-value=1.1e+02 Score=20.64 Aligned_cols=48 Identities=13% Similarity=0.298 Sum_probs=35.8
Q ss_pred HHHhhcCCCCeEEEEEeecCC------------ccCCCCcceEEEEEeCCHHHHHHHHHH
Q 031746 70 VAHIFRPFVGYKEVRLVIKES------------KLRGGDPLILCFVDFENPACAATALSA 117 (153)
Q Consensus 70 l~~~F~~~G~i~~~~~~~~~~------------~~~~g~~kg~~fV~f~~~~~a~~A~~~ 117 (153)
-.++|..||.+..+.++-+.- +...+..-.|..|+|.+.+..+++...
T Consensus 50 a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~k 109 (141)
T 2okq_A 50 AAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQK 109 (141)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHH
Confidence 347899999998888776541 112355667999999999999988843
No 238
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=27.62 E-value=1.2e+02 Score=19.02 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=44.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 031746 52 ASSTLYVEGLPADSTKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATALSALQ 119 (153)
Q Consensus 52 ~~~~L~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~~~l~ 119 (153)
+.|-+-|-|+|..+-..++.-.....|---.|..+.. -+.+.|.+.++..-|++.|-
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyidg-----------qamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDG-----------QAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSS-----------CEEEEESSHHHHHHHHHHHE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecC-----------eeEEEecCChHHHHHHHHHH
Confidence 3577888999999999888777776676555655432 59999999999999998764
No 239
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=27.46 E-value=38 Score=17.25 Aligned_cols=15 Identities=13% Similarity=0.366 Sum_probs=12.9
Q ss_pred CCCCHHHHHHhhcCC
Q 031746 63 ADSTKREVAHIFRPF 77 (153)
Q Consensus 63 ~~~te~~l~~~F~~~ 77 (153)
.+++.++|+.+|.+.
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 578999999999875
No 240
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=20.92 E-value=64 Score=21.52 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=19.4
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCC
Q 031746 97 PLILCFVDFENPACAATALSALQG 120 (153)
Q Consensus 97 ~kg~~fV~f~~~~~a~~A~~~l~g 120 (153)
.+||-||++...++...+++.+.|
T Consensus 42 fPGYVfVe~~~~~~~~~~v~~t~g 65 (152)
T 3p8b_B 42 VKGYIFVEAPNKGVVDEAIRGIRH 65 (152)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCTT
T ss_pred CCcEEEEEEEchHHHHHHHhCCCC
Confidence 457999999998888888876654
No 241
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=20.35 E-value=1.1e+02 Score=23.74 Aligned_cols=49 Identities=16% Similarity=0.071 Sum_probs=34.3
Q ss_pred eEEEcCCCCCC----CHHHHHHhhcCCCCeEEEEEeecCCccCCCCcceEEEEEeCCHHHHHHHH
Q 031746 55 TLYVEGLPADS----TKREVAHIFRPFVGYKEVRLVIKESKLRGGDPLILCFVDFENPACAATAL 115 (153)
Q Consensus 55 ~L~V~nLp~~~----te~~l~~~F~~~G~i~~~~~~~~~~~~~~g~~kg~~fV~f~~~~~a~~A~ 115 (153)
--+||||+.-. ....+.++..+||.|..+++-. .-+|...+.+.+...+
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~------------~~~vvv~~p~~~k~il 68 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGT------------KTTVIVGHHQLAKEVL 68 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETT------------EEEEEECSHHHHHHHH
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCC------------CCEEEECCHHHHHHHH
Confidence 34688887532 2466888889999988776631 3557777888877776
No 242
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=20.26 E-value=42 Score=16.47 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=11.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhc
Q 031746 53 SSTLYVEGLPADSTKREVAHIFR 75 (153)
Q Consensus 53 ~~~L~V~nLp~~~te~~l~~~F~ 75 (153)
.+++|||.- .++|+++-+
T Consensus 5 vrtiwvggt-----peelkklke 22 (36)
T 2ki0_A 5 VRTIWVGGT-----PEELKKLKE 22 (36)
T ss_dssp CCCCCBCCC-----HHHHHHHHH
T ss_pred eEEEEecCC-----HHHHHHHHH
Confidence 578899864 455665543
Done!