Query 031747
Match_columns 153
No_of_seqs 118 out of 344
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 04:47:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3106 ER lumen protein retai 100.0 9.2E-66 2E-70 412.3 5.3 150 1-153 63-212 (212)
2 COG5196 ERD2 ER lumen protein 100.0 3.8E-56 8.2E-61 352.7 7.9 151 1-153 64-214 (214)
3 PF00810 ER_lumen_recept: ER l 100.0 4.6E-46 1E-50 288.4 8.0 108 1-110 38-147 (147)
4 PF04193 PQ-loop: PQ loop repe 94.7 0.19 4E-06 32.5 6.5 54 56-109 2-55 (61)
5 PHA02246 hypothetical protein 72.4 45 0.00097 26.9 8.9 93 29-131 86-178 (192)
6 smart00679 CTNS Repeated motif 70.8 3.9 8.4E-05 22.9 1.9 26 69-94 1-26 (32)
7 TIGR00951 2A43 Lysosomal Cysti 68.8 28 0.00061 28.4 7.4 44 66-109 14-64 (220)
8 COG4095 Uncharacterized conser 61.7 59 0.0013 23.6 7.7 53 57-109 6-58 (89)
9 PF02790 COX2_TM: Cytochrome C 21.3 59 0.0013 21.7 1.4 16 36-51 65-80 (84)
10 COG4618 ArpD ABC-type protease 17.8 3E+02 0.0064 26.3 5.5 50 61-110 30-85 (580)
No 1
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.2e-66 Score=412.28 Aligned_cols=150 Identities=51% Similarity=0.943 Sum_probs=146.7
Q ss_pred CeEeehhHHHHHHHHHhhcccccccccccccccchhhhHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHhhHHHHHHhh
Q 031747 1 MKLIFLGSSFSIVWYMRHHSIVRRSYNKDQDTFRRFFLVLPCLLLALLINENFTFKEVMWTFSLYLEAVAILPQLVLLQR 80 (153)
Q Consensus 1 mK~~fi~~s~~iiylm~~~~~~~~Ty~~~~D~f~~~~li~p~~vLal~~~~~~~~~eilWtFSiyLEsvAILPQL~mlqk 80 (153)
||++||++|.++||||++ |+|+|||+|+|||+++++++||++||+++||++++.|++||||+|||||||||||+|+||
T Consensus 63 mki~fl~~t~~ivymi~~--k~~~tYd~~~DtFri~~llvp~~vlsl~i~~~~t~~eilWtFsiyLEsVaILPQL~~lq~ 140 (212)
T KOG3106|consen 63 MKIAFLASTLWIVYMIRF--KLRATYDKEKDTFRIEYLLVPSAVLSLLINHSFTILEILWTFSIYLESVAILPQLFMLQK 140 (212)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHhcccCceeEEEEehhheeeeeeecCCccHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 899999999999999999 589999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhhhhhhhccCCccchhHhHHHHHHHHHHhceeeeeEeeeeCCcccccCC
Q 031747 81 TRNIDNLTGQYVFFLGAYRGLYILNWVYRYFTELHYVHWIPWISGLVQTLLYADFFYYYFDSWKNNKNLRLPA 153 (153)
Q Consensus 81 ~~~ve~lts~Yv~~LG~yR~ly~~nWi~r~~~~~~~~~~i~~i~giiQt~ly~DFfy~Y~~~~~~G~~~~Lp~ 153 (153)
+||+|++|+||+|+||+||++|++|||+|+.+|+ ++|++++++|++||++||||||+|++++.+|+|++||+
T Consensus 141 tg~~E~~TahYvfaLG~yR~ly~~~WI~r~~~e~-~~~~iai~agiVQT~ly~DFfy~Y~~~v~~g~~~~LP~ 212 (212)
T KOG3106|consen 141 TGEAETITAHYLFALGLYRALYIANWIYRYVTED-FWDPIAIVAGIVQTVLYADFFYLYVTKVLQGKKLKLPA 212 (212)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccchHHHHHHHHHHHHHhHHHHHHHHHHcCCcCCCCC
Confidence 9999999999999999999999999999999988 56999999999999999999999999999999999996
No 2
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.8e-56 Score=352.74 Aligned_cols=151 Identities=42% Similarity=0.742 Sum_probs=146.2
Q ss_pred CeEeehhHHHHHHHHHhhcccccccccccccccchhhhHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHhhHHHHHHhh
Q 031747 1 MKLIFLGSSFSIVWYMRHHSIVRRSYNKDQDTFRRFFLVLPCLLLALLINENFTFKEVMWTFSLYLEAVAILPQLVLLQR 80 (153)
Q Consensus 1 mK~~fi~~s~~iiylm~~~~~~~~Ty~~~~D~f~~~~li~p~~vLal~~~~~~~~~eilWtFSiyLEsvAILPQL~mlqk 80 (153)
||++||+++.+|+++|+. ++++|||+..|+|++..+++||+++|+++|.++++.+++||||+|||||||||||+|+||
T Consensus 64 Mki~FI~s~~yI~~lm~~--~~r~tYdk~lDtF~i~~ll~gsav~slff~~~~tisnvlwtfS~wLESVAILPQL~mLq~ 141 (214)
T COG5196 64 MKILFIGSQVYILFLMRF--KYRSTYDKKLDTFNILTLLVGSAVFSLFFTRGGTISNVLWTFSLWLESVAILPQLVMLQE 141 (214)
T ss_pred HHHHHHHHHHHHHHHHHh--cccchHHHhhhhhhhhhhhhhhhhheeeecCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999 479999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhhhhhhhccCCccchhHhHHHHHHHHHHhceeeeeEeeeeCCcccccCC
Q 031747 81 TRNIDNLTGQYVFFLGAYRGLYILNWVYRYFTELHYVHWIPWISGLVQTLLYADFFYYYFDSWKNNKNLRLPA 153 (153)
Q Consensus 81 ~~~ve~lts~Yv~~LG~yR~ly~~nWi~r~~~~~~~~~~i~~i~giiQt~ly~DFfy~Y~~~~~~G~~~~Lp~ 153 (153)
.||-|++|+||+++||+||++|++|||+|+..+.+..+.+++.+|++||++|.|||+.|++.|.|||+++||+
T Consensus 142 ~GeteslT~hYvfamgLYRalYip~wI~r~~~~~kk~~~iai~aGivQTlLY~DFf~iYyr~V~rGk~f~LP~ 214 (214)
T COG5196 142 AGETESLTSHYVFAMGLYRALYIPYWILRKVYDIKKTGNIAIAAGIVQTLLYLDFFAIYYRYVFRGKSFSLPS 214 (214)
T ss_pred cCCcceeHHHHHHHHHHHHHhhhhHHHHHhhhcccccccchhHHHHHHHHHHHHhHHhhhhhhhcccccCCCC
Confidence 9999999999999999999999999999998875556889999999999999999999999999999999996
No 3
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=100.00 E-value=4.6e-46 Score=288.38 Aligned_cols=108 Identities=52% Similarity=1.038 Sum_probs=104.5
Q ss_pred CeEeehhHHHHHHHHHhhcccccccccccccccchhhhHHHHHhhhhhhc--CCCchhHHHHHHHHHHHHHHhhHHHHHH
Q 031747 1 MKLIFLGSSFSIVWYMRHHSIVRRSYNKDQDTFRRFFLVLPCLLLALLIN--ENFTFKEVMWTFSLYLEAVAILPQLVLL 78 (153)
Q Consensus 1 mK~~fi~~s~~iiylm~~~~~~~~Ty~~~~D~f~~~~li~p~~vLal~~~--~~~~~~eilWtFSiyLEsvAILPQL~ml 78 (153)
||++++++|++++|+|+. ++|+|||+++|+|+..++++||++||+++| +++++.|++||||+|||||||||||+|+
T Consensus 38 ~k~~~i~~s~~iiyli~~--~~~~Ty~~~~D~f~~~~li~p~~vLa~i~~p~~~~~~~ei~wtfSi~LEsvAIlPQL~m~ 115 (147)
T PF00810_consen 38 MKVFFIVSSLYIIYLIFF--KYKSTYDKEIDTFRLEYLIVPCFVLALIFHPLNSFFFLEILWTFSIYLESVAILPQLFML 115 (147)
T ss_pred HHHHHHHHHHHHHHhhhe--eehhhhhccccchhhhHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 699999999999999976 699999999999999999999999999999 5688999999999999999999999999
Q ss_pred hhcCCccchhhHHHHHHHHHHHHHHhhhhhhh
Q 031747 79 QRTRNIDNLTGQYVFFLGAYRGLYILNWVYRY 110 (153)
Q Consensus 79 qk~~~ve~lts~Yv~~LG~yR~ly~~nWi~r~ 110 (153)
||+||+|++|+||+++||+||++|++|||+||
T Consensus 116 ~k~~~ve~ltshYv~~Lg~yR~ly~~~Wi~rY 147 (147)
T PF00810_consen 116 QKTGEVENLTSHYVFALGLYRALYLLNWIYRY 147 (147)
T ss_pred HHhcCeeehHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999997
No 4
>PF04193 PQ-loop: PQ loop repeat
Probab=94.73 E-value=0.19 Score=32.47 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhHHHHHHHHHHHHHHhhhhhh
Q 031747 56 KEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRGLYILNWVYR 109 (153)
Q Consensus 56 ~eilWtFSiyLEsvAILPQL~mlqk~~~ve~lts~Yv~~LG~yR~ly~~nWi~r 109 (153)
.+++...+..+.+++-+||+....|++.++.+..-++.......++.+++.+..
T Consensus 2 ~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~ 55 (61)
T PF04193_consen 2 SNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILS 55 (61)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 467888999999999999999999999999999999998888888888877665
No 5
>PHA02246 hypothetical protein
Probab=72.37 E-value=45 Score=26.93 Aligned_cols=93 Identities=18% Similarity=0.242 Sum_probs=50.0
Q ss_pred cccccchhhhHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhHHHHHHHHHHHHHHhhhhh
Q 031747 29 DQDTFRRFFLVLPCLLLALLINENFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRGLYILNWVY 108 (153)
Q Consensus 29 ~~D~f~~~~li~p~~vLal~~~~~~~~~eilWtFSiyLEsvAILPQL~mlqk~~~ve~lts~Yv~~LG~yR~ly~~nWi~ 108 (153)
++|-|...++++-++.+-++ .......+..=+-|+ -.|-.||...+.|++..|....-.-..+|..-++=..|-..
T Consensus 86 kkd~f~~~fiiifSLllfll-~~~~evtQtVat~tI---iLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~L 161 (192)
T PHA02246 86 KKDYFSIPFIIVFSLLLFLL-SDFTALTQTVATITI---ILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVL 161 (192)
T ss_pred ccccccchHHHHHHHHHHHH-hhhHHHHHHHHHHHH---HHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhh
Confidence 35555555555544443222 111223344444444 45789999999999988887765555555554443333322
Q ss_pred hhhccCCccchhHhHHHHHHHHH
Q 031747 109 RYFTELHYVHWIPWISGLVQTLL 131 (153)
Q Consensus 109 r~~~~~~~~~~i~~i~giiQt~l 131 (153)
. + .....+++++++..+
T Consensus 162 t----h--v~~hIiiTEf~N~iL 178 (192)
T PHA02246 162 T----H--TYVHIIATEFVNFVL 178 (192)
T ss_pred h----C--CcceeeHHHHHHHHH
Confidence 2 1 122234677766644
No 6
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=70.76 E-value=3.9 Score=22.93 Aligned_cols=26 Identities=27% Similarity=0.554 Sum_probs=21.1
Q ss_pred HHhhHHHHHHhhcCCccchhhHHHHH
Q 031747 69 VAILPQLVLLQRTRNIDNLTGQYVFF 94 (153)
Q Consensus 69 vAILPQL~mlqk~~~ve~lts~Yv~~ 94 (153)
++-+||.....|++.++.+-.-+++.
T Consensus 1 ~~~~PQi~~~~~~ks~~glS~~~~~l 26 (32)
T smart00679 1 VSLLPQIIKNYRRKSTEGLSILFVLL 26 (32)
T ss_pred CcchhHHHHHHHcCCcCcCCHHHHHH
Confidence 36789999999999999887666553
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=68.80 E-value=28 Score=28.44 Aligned_cols=44 Identities=16% Similarity=0.307 Sum_probs=32.6
Q ss_pred HHHHHhhHHHHHHhhcCCccchhhHHHH-------HHHHHHHHHHhhhhhh
Q 031747 66 LEAVAILPQLVLLQRTRNIDNLTGQYVF-------FLGAYRGLYILNWVYR 109 (153)
Q Consensus 66 LEsvAILPQL~mlqk~~~ve~lts~Yv~-------~LG~yR~ly~~nWi~r 109 (153)
.=+++-+||+....|++.+|.+.-.++. +.+.|-..-..+|-.+
T Consensus 14 ~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~ 64 (220)
T TIGR00951 14 AWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSIT 64 (220)
T ss_pred HHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 3356789999999999999999888877 4445555555556555
No 8
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=61.71 E-value=59 Score=23.56 Aligned_cols=53 Identities=25% Similarity=0.313 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhcCCccchhhHHHHHHHHHHHHHHhhhhhh
Q 031747 57 EVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRGLYILNWVYR 109 (153)
Q Consensus 57 eilWtFSiyLEsvAILPQL~mlqk~~~ve~lts~Yv~~LG~yR~ly~~nWi~r 109 (153)
|+.=+.+--+-.+|.+||+.-.-|+++..+++--....+...+++.++.=+..
T Consensus 6 ~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi 58 (89)
T COG4095 6 EVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILI 58 (89)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444566889999999999999999999888888888888866544433
No 9
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=21.31 E-value=59 Score=21.66 Aligned_cols=16 Identities=19% Similarity=0.569 Sum_probs=9.0
Q ss_pred hhhHHHHHhhhhhhcC
Q 031747 36 FFLVLPCLLLALLINE 51 (153)
Q Consensus 36 ~~li~p~~vLal~~~~ 51 (153)
..-++|++++..+.-|
T Consensus 65 ~WTiiP~iiLl~l~~p 80 (84)
T PF02790_consen 65 IWTIIPAIILLFLAFP 80 (84)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhh
Confidence 3556676666555433
No 10
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=17.84 E-value=3e+02 Score=26.27 Aligned_cols=50 Identities=26% Similarity=0.288 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhHHHHHHhh------cCCccchhhHHHHHHHHHHHHHHhhhhhhh
Q 031747 61 TFSLYLEAVAILPQLVLLQR------TRNIDNLTGQYVFFLGAYRGLYILNWVYRY 110 (153)
Q Consensus 61 tFSiyLEsvAILPQL~mlqk------~~~ve~lts~Yv~~LG~yR~ly~~nWi~r~ 110 (153)
.||-...-.+..|-|+|+|= ++.++++..--+.++|+|=+.-++.||-+.
T Consensus 30 lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~ 85 (580)
T COG4618 30 LFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRSR 85 (580)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888999999999993 578999999999999999999999998774
Done!