Query 031747
Match_columns 153
No_of_seqs 118 out of 344
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 07:13:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fm8_C Cell invasion protein S 14.6 69 0.0024 25.7 1.6 14 63-76 219-232 (240)
2 2fm9_A Cell invasion protein S 13.9 60 0.0021 25.7 1.1 12 65-76 195-206 (215)
3 3b0b_C CENP-X, centromere prot 11.8 79 0.0027 21.2 1.1 7 71-77 72-78 (81)
4 4dra_E Centromere protein X; D 11.1 85 0.0029 21.3 1.1 7 71-77 76-82 (84)
5 2gsm_B Cytochrome C oxidase su 10.6 91 0.0031 25.0 1.3 12 37-48 79-90 (262)
6 2k37_A Chlorosome protein A; b 7.8 1.3E+02 0.0044 19.3 0.9 12 59-70 26-37 (59)
7 3hb3_B Cytochrome C oxidase su 7.4 1.4E+02 0.0049 24.5 1.2 12 37-48 110-121 (298)
8 1nig_A Hypothetical protein TA 6.3 4.5E+02 0.015 19.4 3.3 33 86-119 94-126 (152)
9 1v54_B Cytochrome C oxidase po 6.3 2.2E+02 0.0076 22.2 1.8 12 37-48 65-76 (227)
10 2hac_A T-cell surface glycopro 5.8 3.7E+02 0.013 15.2 2.0 16 118-133 9-24 (33)
No 1
>2fm8_C Cell invasion protein SIPA; type III secretion, chaperone, translocation, protein foldin virulence, bacterial, chaperone-cell invasion C; 2.20A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=14.57 E-value=69 Score=25.66 Aligned_cols=14 Identities=29% Similarity=0.479 Sum_probs=11.3
Q ss_pred HHHHHHHHhhHHHH
Q 031747 63 SLYLEAVAILPQLV 76 (153)
Q Consensus 63 SiyLEsvAILPQL~ 76 (153)
+==||.+|++|||.
T Consensus 219 aR~Le~~AviP~LL 232 (240)
T 2fm8_C 219 ARHLEMQTLIPLLL 232 (240)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHH
Confidence 34589999999985
No 2
>2fm9_A Cell invasion protein SIPA; type II secretion, virulence, bacterial, C invasion; 2.00A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=13.89 E-value=60 Score=25.65 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=10.1
Q ss_pred HHHHHHhhHHHH
Q 031747 65 YLEAVAILPQLV 76 (153)
Q Consensus 65 yLEsvAILPQL~ 76 (153)
=||.+|++|||.
T Consensus 195 ~L~~~av~P~LL 206 (215)
T 2fm9_A 195 HLEMQTLIPLLL 206 (215)
T ss_dssp CCHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 478899999985
No 3
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=11.78 E-value=79 Score=21.24 Aligned_cols=7 Identities=71% Similarity=1.293 Sum_probs=4.7
Q ss_pred hhHHHHH
Q 031747 71 ILPQLVL 77 (153)
Q Consensus 71 ILPQL~m 77 (153)
|+|||.|
T Consensus 72 i~pqLlL 78 (81)
T 3b0b_C 72 VLPQLLL 78 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6777765
No 4
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=11.09 E-value=85 Score=21.31 Aligned_cols=7 Identities=71% Similarity=1.293 Sum_probs=4.9
Q ss_pred hhHHHHH
Q 031747 71 ILPQLVL 77 (153)
Q Consensus 71 ILPQL~m 77 (153)
|+|||.|
T Consensus 76 i~pQLlL 82 (84)
T 4dra_E 76 VLPQLLL 82 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6777765
No 5
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=10.59 E-value=91 Score=25.03 Aligned_cols=12 Identities=17% Similarity=0.667 Sum_probs=7.0
Q ss_pred hhHHHHHhhhhh
Q 031747 37 FLVLPCLLLALL 48 (153)
Q Consensus 37 ~li~p~~vLal~ 48 (153)
+.++|+++|.++
T Consensus 79 WTiiP~iILi~l 90 (262)
T 2gsm_B 79 WTIVPIVILVAI 90 (262)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 456666666544
No 6
>2k37_A Chlorosome protein A; bacteriochlorophyll, chlorophyll, chromophore, electron transport, magnesium, metal-binding, photosynthesis, transport; NMR {Chlorobium tepidum}
Probab=7.79 E-value=1.3e+02 Score=19.26 Aligned_cols=12 Identities=8% Similarity=0.241 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHH
Q 031747 59 MWTFSLYLEAVA 70 (153)
Q Consensus 59 lWtFSiyLEsvA 70 (153)
-|++|-+||+++
T Consensus 26 W~~vg~~le~~g 37 (59)
T 2k37_A 26 WETVGMLFDSLG 37 (59)
T ss_dssp HHHHHHHTGGGT
T ss_pred hHHHHHHHHHHH
Confidence 489999999986
No 7
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=7.41 E-value=1.4e+02 Score=24.47 Aligned_cols=12 Identities=25% Similarity=0.722 Sum_probs=6.2
Q ss_pred hhHHHHHhhhhh
Q 031747 37 FLVLPCLLLALL 48 (153)
Q Consensus 37 ~li~p~~vLal~ 48 (153)
+.++|+++|.++
T Consensus 110 WTiiP~iILi~L 121 (298)
T 3hb3_B 110 WTLVPVLILVAI 121 (298)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 445555555444
No 8
>1nig_A Hypothetical protein TA1238; structural genomics, four helixbundle, PSI, protein structur initiative; 2.00A {Thermoplasma acidophilum} SCOP: a.25.2.1
Probab=6.32 E-value=4.5e+02 Score=19.44 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=23.0
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhhhccCCccch
Q 031747 86 NLTGQYVFFLGAYRGLYILNWVYRYFTELHYVHW 119 (153)
Q Consensus 86 ~lts~Yv~~LG~yR~ly~~nWi~r~~~~~~~~~~ 119 (153)
+=+|-|++ ++.+-.=-.+||+++.-++.+|.+.
T Consensus 94 nk~s~Ymf-~A~sh~~~Av~~~~~m~edErFk~~ 126 (152)
T 1nig_A 94 NRWSLYMF-LARSAVDSAVYWSYRMKETEEFKEI 126 (152)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHHTSTTTTTT
T ss_pred chHHHHHH-HHHHHHHHHHHHHHHhcchHHHHHH
Confidence 45677877 4455566779999998776666543
No 9
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=6.27 E-value=2.2e+02 Score=22.18 Aligned_cols=12 Identities=33% Similarity=0.919 Sum_probs=6.0
Q ss_pred hhHHHHHhhhhh
Q 031747 37 FLVLPCLLLALL 48 (153)
Q Consensus 37 ~li~p~~vLal~ 48 (153)
+.++|+++|..+
T Consensus 65 WTiiP~iil~~l 76 (227)
T 1v54_B 65 WTILPAIILILI 76 (227)
T ss_dssp HHHHHHHHHHHH
T ss_pred eehHHHHHHHHH
Confidence 445555555443
No 10
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=5.75 E-value=3.7e+02 Score=15.17 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=12.8
Q ss_pred chhHhHHHHHHHHHHh
Q 031747 118 HWIPWISGLVQTLLYA 133 (153)
Q Consensus 118 ~~i~~i~giiQt~ly~ 133 (153)
|-+.++-|+|-|++|.
T Consensus 9 DgiL~iYgii~T~Ly~ 24 (33)
T 2hac_A 9 DGILFIYGVILTALFL 24 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566789999999985
Done!