Query 031747
Match_columns 153
No_of_seqs 118 out of 344
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 07:13:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031747.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031747hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54b2 f.17.2.1 (B:1-90) Mito 22.0 28 0.0021 21.8 2.6 16 37-52 65-80 (90)
2 d3ehbb2 f.17.2.1 (B:1-107) Bac 14.6 33 0.0024 22.1 1.5 16 37-52 81-96 (107)
3 d2fm9a1 a.257.1.1 (A:49-263) C 13.7 29 0.0021 25.7 1.1 12 65-76 195-206 (215)
4 d3dtub2 f.17.2.1 (B:30-129) Ba 8.6 90 0.0066 19.4 2.2 17 36-52 74-90 (100)
5 d1jt6a2 a.121.1.1 (A:73-187) M 8.3 1.2E+02 0.0086 19.4 2.8 32 100-131 80-111 (115)
6 d1fftb2 f.17.2.1 (B:27-117) Cy 7.2 88 0.0064 19.2 1.6 14 37-50 66-79 (91)
7 d1niga_ a.25.2.1 (A:) Hypothet 6.5 2E+02 0.015 19.4 3.3 33 86-119 94-126 (148)
8 d1dq3a3 d.95.2.2 (A:129-226) P 4.4 1.4E+02 0.01 18.9 1.2 13 83-95 80-92 (98)
9 d2axtm1 f.23.35.1 (M:1-36) Pho 3.6 2.4E+02 0.017 14.8 1.5 13 35-47 12-24 (36)
10 d1ekra_ d.58.21.1 (A:) Molybde 3.6 1.5E+02 0.011 20.3 0.9 22 80-101 98-120 (146)
No 1
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.00 E-value=28 Score=21.84 Aligned_cols=16 Identities=25% Similarity=0.619 Sum_probs=8.4
Q ss_pred hhHHHHHhhhhhhcCC
Q 031747 37 FLVLPCLLLALLINEN 52 (153)
Q Consensus 37 ~li~p~~vLal~~~~~ 52 (153)
.-++|+++|..+.-|+
T Consensus 65 WTiiP~lILi~ia~PS 80 (90)
T d1v54b2 65 WTILPAIILILIALPS 80 (90)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455665555554443
No 2
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=14.56 E-value=33 Score=22.09 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=8.9
Q ss_pred hhHHHHHhhhhhhcCC
Q 031747 37 FLVLPCLLLALLINEN 52 (153)
Q Consensus 37 ~li~p~~vLal~~~~~ 52 (153)
..++|+++|..+.-|+
T Consensus 81 WTviP~lIL~~laipS 96 (107)
T d3ehbb2 81 WTLVPVLILVAIGAFS 96 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666665554433
No 3
>d2fm9a1 a.257.1.1 (A:49-263) Cell invasion protein SipA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=13.74 E-value=29 Score=25.66 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=10.1
Q ss_pred HHHHHHhhHHHH
Q 031747 65 YLEAVAILPQLV 76 (153)
Q Consensus 65 yLEsvAILPQL~ 76 (153)
=||.+|++|||.
T Consensus 195 ~L~~~av~P~LL 206 (215)
T d2fm9a1 195 HLEMQTLIPLLL 206 (215)
T ss_dssp CCHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 478899999985
No 4
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.62 E-value=90 Score=19.37 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=10.4
Q ss_pred hhhHHHHHhhhhhhcCC
Q 031747 36 FFLVLPCLLLALLINEN 52 (153)
Q Consensus 36 ~~li~p~~vLal~~~~~ 52 (153)
...++|+++|..+.-|+
T Consensus 74 iWTviP~lILi~l~~pS 90 (100)
T d3dtub2 74 AWTIVPIVILVAIGAFS 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35677777776654443
No 5
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=8.32 E-value=1.2e+02 Score=19.37 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=18.4
Q ss_pred HHHHhhhhhhhhccCCccchhHhHHHHHHHHH
Q 031747 100 GLYILNWVYRYFTELHYVHWIPWISGLVQTLL 131 (153)
Q Consensus 100 ~ly~~nWi~r~~~~~~~~~~i~~i~giiQt~l 131 (153)
++..+||+..++..++-.+.-.+.-..+|.++
T Consensus 80 il~~lng~~~Wy~~~g~~~~~~la~~~~~l~L 111 (115)
T d1jt6a2 80 AANAVNGIVTFTHEQNINERIKLMNKFSQIFL 111 (115)
T ss_dssp HHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 45678899987765432244444455555544
No 6
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=7.22 E-value=88 Score=19.24 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=9.1
Q ss_pred hhHHHHHhhhhhhc
Q 031747 37 FLVLPCLLLALLIN 50 (153)
Q Consensus 37 ~li~p~~vLal~~~ 50 (153)
.-++|++++..+.-
T Consensus 66 WtiIP~iil~~iav 79 (91)
T d1fftb2 66 VWTVPILIIIFLAV 79 (91)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55678877766643
No 7
>d1niga_ a.25.2.1 (A:) Hypothetical protein Ta1238 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=6.47 E-value=2e+02 Score=19.42 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=23.1
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhhhccCCccch
Q 031747 86 NLTGQYVFFLGAYRGLYILNWVYRYFTELHYVHW 119 (153)
Q Consensus 86 ~lts~Yv~~LG~yR~ly~~nWi~r~~~~~~~~~~ 119 (153)
+=+|-|++ ++.+-.=-.+||+++.-++.+|.+.
T Consensus 94 nk~slYmf-lArsh~~~Av~~~~~m~edErFk~~ 126 (148)
T d1niga_ 94 NRWSLYMF-LARSAVDSAVYWSYRMKETEEFKEI 126 (148)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHHTSTTTTTT
T ss_pred chHHHHHH-HHHHHHHHHHHHHHHhcchHHHHHH
Confidence 45677877 4455566779999998776666543
No 8
>d1dq3a3 d.95.2.2 (A:129-226) PI-Pfui intein {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=4.42 E-value=1.4e+02 Score=18.86 Aligned_cols=13 Identities=31% Similarity=0.582 Sum_probs=10.1
Q ss_pred CccchhhHHHHHH
Q 031747 83 NIDNLTGQYVFFL 95 (153)
Q Consensus 83 ~ve~lts~Yv~~L 95 (153)
++..+||||+=.|
T Consensus 80 kar~itshy~~ll 92 (98)
T d1dq3a3 80 KARNITSHYLKLL 92 (98)
T ss_dssp CCHHHHHHHHHHH
T ss_pred eecccHHHHHHHH
Confidence 4678999998655
No 9
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.64 E-value=2.4e+02 Score=14.84 Aligned_cols=13 Identities=23% Similarity=0.802 Sum_probs=8.3
Q ss_pred hhhhHHHHHhhhh
Q 031747 35 RFFLVLPCLLLAL 47 (153)
Q Consensus 35 ~~~li~p~~vLal 47 (153)
..|+++|+..|-.
T Consensus 12 ~LFilvPt~FLli 24 (36)
T d2axtm1 12 ALFVLVPSVFLII 24 (36)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3577888765543
No 10
>d1ekra_ d.58.21.1 (A:) Molybdenum cofactor biosynthesis protein C, MoaC {Escherichia coli [TaxId: 562]}
Probab=3.64 E-value=1.5e+02 Score=20.29 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=18.1
Q ss_pred hcC-CccchhhHHHHHHHHHHHH
Q 031747 80 RTR-NIDNLTGQYVFFLGAYRGL 101 (153)
Q Consensus 80 k~~-~ve~lts~Yv~~LG~yR~l 101 (153)
||| |-|.+|+--+.+|.+|=-+
T Consensus 98 kTGVEMEALtavsva~LTiYDM~ 120 (146)
T d1ekra_ 98 KTGVEMEALTAASVAALTIYDMC 120 (146)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCceehHHHHHHHHHHHHHHHHH
Confidence 566 8899999999999988533
Done!