BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031749
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O1Z|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) Double Cysteine
Mutant From Rabbit
Length = 126
Score = 99.0 bits (245), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
Query: 25 MASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVK 84
MA E A A P TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK
Sbjct: 1 MADEIAKAQVARPG-GDTIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLVIPKKH 59
Query: 85 DGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGG 132
++ +S AE+ +LG L+ K A GL+ G+R+V+N+G +GG
Sbjct: 60 --ISQISAAEDADESLLGHLMIVGKKAAADLGLKKGYRMVVNEGSDGG 105
>pdb|1RZY|A Chain A, Crystal Structure Of Rabbit Hint Complexed With N-
Ethylsulfamoyladenosine
pdb|3QGZ|A Chain A, Re-Investigated High Resolution Crystal Structure Of
Histidine Triad Nucleotide-Binding Protein 1 (Hint1)
From Rabbit Complexed With Adenosine
Length = 126
Score = 99.0 bits (245), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
Query: 25 MASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVK 84
MA E A A P TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK
Sbjct: 1 MADEIAKAQVARPG-GDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKH 59
Query: 85 DGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGG 132
++ +S AE+ +LG L+ K A GL+ G+R+V+N+G +GG
Sbjct: 60 --ISQISAAEDADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGG 105
>pdb|3O1X|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C84a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
Query: 25 MASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVK 84
MA E A A P TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK
Sbjct: 1 MADEIAKAQVARPG-GDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKH 59
Query: 85 DGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGG 132
++ +S AE+ +LG L+ K A GL+ G+R+V+N+G +GG
Sbjct: 60 --ISQISAAEDADESLLGHLMIVGKKAAADLGLKKGYRMVVNEGSDGG 105
>pdb|3O1C|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C38a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
Query: 25 MASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVK 84
MA E A A P TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK
Sbjct: 1 MADEIAKAQVARPG-GDTIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLVIPKKH 59
Query: 85 DGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGG 132
++ +S AE+ +LG L+ K A GL+ G+R+V+N+G +GG
Sbjct: 60 --ISQISAAEDADESLLGHLMIVGKKCAADLGLKKGYRMVVNEGSDGG 105
>pdb|4EQE|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQE|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQG|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQG|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQH|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
pdb|4EQH|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
Length = 128
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 70/109 (64%), Gaps = 3/109 (2%)
Query: 24 VMASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKV 83
+MA E A A P TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK
Sbjct: 2 LMADEIAKAQVARPG-GDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKK 60
Query: 84 KDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGG 132
++ +S AE+ +LG L+ K A GL G+R+V+N+G +GG
Sbjct: 61 H--ISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGG 107
>pdb|3TW2|A Chain A, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
pdb|3TW2|B Chain B, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
Length = 126
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 69/108 (63%), Gaps = 3/108 (2%)
Query: 25 MASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVK 84
MA E A A P TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK
Sbjct: 1 MADEIAKAQVARPG-GDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH 59
Query: 85 DGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGG 132
++ +S AE+ +LG L+ K A GL G+R+V+N+G +GG
Sbjct: 60 --ISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGG 105
>pdb|3RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With Gmp
pdb|4RHN|A Chain A, Histidine Triad Nucleotide-binding Protein (hint) From
Rabbit Complexed With Adenosine
pdb|5RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With 8-Br-Amp
pdb|6RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Without Nucleotide
Length = 115
Score = 96.3 bits (238), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 64/91 (70%), Gaps = 2/91 (2%)
Query: 42 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEIL 101
TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK ++ +S AE+ +L
Sbjct: 6 TIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKH--ISQISAAEDADESLL 63
Query: 102 GRLLYTAKLVAKQEGLEDGFRIVINDGPNGG 132
G L+ K A GL+ G+R+V+N+G +GG
Sbjct: 64 GHLMIVGKKCAADLGLKKGYRMVVNEGSDGG 94
>pdb|1KPA|A Chain A, Pkci-1-Zinc
pdb|1KPA|B Chain B, Pkci-1-Zinc
pdb|1KPC|A Chain A, Pkci-1-Apo+zinc
pdb|1KPC|B Chain B, Pkci-1-Apo+zinc
pdb|1KPC|C Chain C, Pkci-1-Apo+zinc
pdb|1KPC|D Chain D, Pkci-1-Apo+zinc
pdb|1KPE|A Chain A, Pkci-Transition State Analog
pdb|1KPF|A Chain A, Pkci-Substrate Analog
pdb|1AV5|A Chain A, Pkci-Substrate Analog
pdb|1AV5|B Chain B, Pkci-Substrate Analog
pdb|1KPE|B Chain B, Pkci-Transition State Analog
Length = 126
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 68/107 (63%), Gaps = 3/107 (2%)
Query: 26 ASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKD 85
A E A A P TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK
Sbjct: 2 ADEIAKAQVARPG-GDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH- 59
Query: 86 GLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGG 132
++ +S AE+ +LG L+ K A GL G+R+V+N+G +GG
Sbjct: 60 -ISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGG 105
>pdb|1KPB|A Chain A, Pkci-1-Apo
pdb|1KPB|B Chain B, Pkci-1-Apo
Length = 125
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 68/107 (63%), Gaps = 3/107 (2%)
Query: 26 ASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKD 85
A E A A P TIF KII KEIP+K+++EDD+ LAF DI PQAPTH L+IPK
Sbjct: 1 ADEIAKAQVARPG-GDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKH- 58
Query: 86 GLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGG 132
++ +S AE+ +LG L+ K A GL G+R+V+N+G +GG
Sbjct: 59 -ISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGG 104
>pdb|3N1T|A Chain A, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|B Chain B, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|E Chain E, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|F Chain F, Crystal Structure Of The H101a Mutant Echint Gmp Complex
Length = 119
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 64/92 (69%), Gaps = 3/92 (3%)
Query: 42 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEIL 101
TIF KII +EIPS +VY+DD V AFRDI PQAPTHILIIP + AE H + L
Sbjct: 5 TIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAE--HEQAL 62
Query: 102 GRLLYTAKLVAKQEGL-EDGFRIVINDGPNGG 132
GR++ A +A+QEG+ EDG+R+++N +GG
Sbjct: 63 GRMITVAAKIAEQEGIAEDGYRLIMNTNRHGG 94
>pdb|3N1S|A Chain A, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|B Chain B, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|E Chain E, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|F Chain F, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|I Chain I, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|J Chain J, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|M Chain M, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|N Chain N, Crystal Structure Of Wild Type Echint Gmp Complex
Length = 119
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 64/92 (69%), Gaps = 3/92 (3%)
Query: 42 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEIL 101
TIF KII +EIPS +VY+DD V AFRDI PQAPTHILIIP + AE H + L
Sbjct: 5 TIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAE--HEQAL 62
Query: 102 GRLLYTAKLVAKQEGL-EDGFRIVINDGPNGG 132
GR++ A +A+QEG+ EDG+R+++N +GG
Sbjct: 63 GRMITVAAKIAEQEGIAEDGYRLIMNTNRHGG 94
>pdb|3OJ7|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Sulfate
pdb|3OMF|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Amp
pdb|3OXK|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Gmp
Length = 117
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 42 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEIL 101
IF KI K+IPS +VYEDD++ AF+DI+P AP HIL+IP K + L++ E + +
Sbjct: 9 CIFCKIAQKQIPSTIVYEDDEIFAFKDINPIAPIHILVIP--KQHIASLNEITEENEAFI 66
Query: 102 GRLLYTAKLVAKQEGLEDGFRIVINDGPNGGH 133
G++LY L+ K+E E G+R+V N G + G
Sbjct: 67 GKVLYKVSLIGKKECPE-GYRVVNNIGEDAGQ 97
>pdb|4EGU|A Chain A, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
pdb|4EGU|B Chain B, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
Length = 119
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 42 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEIL 101
IF KI N EIPS VYEDD+VLAF D++P AP HIL++P K L ++ +I+
Sbjct: 6 CIFCKIANGEIPSTKVYEDDRVLAFNDLNPVAPYHILVVP--KKHYDSLIDIPDKEMDIV 63
Query: 102 GRLLYTAKLVAKQEGLED-GFRIVINDGPNGG 132
+ +AK++G + GFR++ N G +GG
Sbjct: 64 SHIHVVINKIAKEKGFDQTGFRVINNCGSDGG 95
>pdb|1XQU|A Chain A, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
pdb|1XQU|B Chain B, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
Length = 147
Score = 68.9 bits (167), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 58/92 (63%), Gaps = 3/92 (3%)
Query: 42 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEIL 101
+F KII +E+PS + YED++V+A +DI+P AP H+LIIP K+ + + + E + +IL
Sbjct: 37 CVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIP--KEHIANVKEINESNAQIL 94
Query: 102 GRLLYTAKLVAKQEGL-EDGFRIVINDGPNGG 132
+ A VA+ G+ E G+R++ N G G
Sbjct: 95 IDIHKAANKVAEDLGIAEKGYRLITNCGVAAG 126
>pdb|3LB5|A Chain A, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|B Chain B, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|C Chain C, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|D Chain D, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
Length = 161
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 32/44 (72%)
Query: 39 DSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPK 82
D+ IF K+I EIPS VYEDD V+AF DI PQAP H L+IPK
Sbjct: 27 DNNNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPK 70
>pdb|3P0T|A Chain A, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
pdb|3P0T|B Chain B, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
Length = 138
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 37 PSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEER 96
P +IF KIIN+E+P + VYEDD V+AF I+P H L++P+ + + ++
Sbjct: 2 PGSMASIFTKIINRELPGRFVYEDDDVVAFLTIEPMTQGHTLVVPREE-----IDNWQDV 56
Query: 97 HCEILGRLLYTAKLVAK 113
R++ ++L+ K
Sbjct: 57 DSAAFNRVMGVSQLIGK 73
>pdb|3L7X|A Chain A, The Crystal Structure Of Smu.412c From Streptococcus
Mutans Ua159
Length = 173
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 25 MASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVK 84
MAS S + +F KI+ +IPS VYED+ VLAF DI H L+IPK +
Sbjct: 21 MASMTGGQQMGRGSMNDCLFCKIVAGDIPSSKVYEDEDVLAFLDISQATKGHTLVIPK-E 79
Query: 85 DGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGH 133
L + + + R+ A+ + K DG I+ N+ G
Sbjct: 80 HVRNALEMTQTQAANLFARIPKIARALQKATK-ADGLNIINNNEETAGQ 127
>pdb|3IMI|A Chain A, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|B Chain B, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|C Chain C, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|D Chain D, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
Length = 147
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 42 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKV-KDGLTGLSKAEERHCEI 100
IF KII+ +I VYED+ VLAF DI H L+IPKV K + L+ EI
Sbjct: 11 CIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTP------EI 64
Query: 101 LGRLLYTAKLVA---KQEGLEDGFRIVINDGPNGG----HFSHPRPPPRRTTNE 147
+ +A K E GF ++ N+G G HF H PR N+
Sbjct: 65 ASHIFSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHF-HLHLIPRYGEND 117
>pdb|1Y23|A Chain A, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|B Chain B, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|C Chain C, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|D Chain D, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|E Chain E, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
Length = 145
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 26/41 (63%)
Query: 42 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPK 82
IF KII +IPS VYED+ VLAF DI H L+IPK
Sbjct: 7 CIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPK 47
>pdb|3KSV|A Chain A, Hypothetical Protein From Leishmania Major
Length = 149
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 42 TIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPK 82
IF KII +IP V E K LAF DI+P + H+L+IPK
Sbjct: 13 CIFCKIIKGDIPCAKVAETSKALAFMDINPLSRGHMLVIPK 53
>pdb|2EO4|A Chain A, Crystal Structure Of Hypothetical Histidine Triad
Nucleotide-Binding Protein St2152 From Sulfolobus
Tokodaii Strain7
Length = 149
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 44 FDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGR 103
F IIN+E+ VYED+K A D P + H L+IP K +A+E L +
Sbjct: 3 FCSIINRELEGYFVYEDEKFAAILDKYPVSLGHTLVIP--KKHFENYLEADEDTLAELAK 60
Query: 104 LLYTAKLVAKQEGLEDGFRIVINDGPNGGH 133
++ L K DG R++ N G + G
Sbjct: 61 VVKLVSLGIKDAVKADGLRLLTNIGRSAGQ 90
>pdb|3O0M|A Chain A, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
pdb|3O0M|B Chain B, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
Length = 149
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 37 PSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKD-GLTGLSKAEE 95
P +F I++ + P+ +YED+ L DI P H L+IPK LT
Sbjct: 2 PGSMSCVFCAIVSGDAPAIRIYEDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETV 61
Query: 96 RHCEILGRLLYTAKLVAKQEGLE-DGFRIVINDG 128
+G+ + A A++ GL DG I INDG
Sbjct: 62 AGMAAVGQRIARA---ARESGLHADGNNIAINDG 92
>pdb|3R6F|A Chain A, Crystal Structure Of A Zinc-Containing Hit Family Protein
From Encephalitozoon Cuniculi
Length = 135
Score = 33.1 bits (74), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 54 SKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAK 113
+ ++YE D++ A D P + H L+IPK K EE L +L T + + +
Sbjct: 18 ANIIYETDRLFALIDRYPLSKGHFLVIPKAHHPYLHNYKPEE-----LSGVLDTIRHLVQ 72
Query: 114 QEGLEDGFRIVINDG 128
+ G E + I+ N+G
Sbjct: 73 KFGFER-YNILQNNG 86
>pdb|3SZQ|A Chain A, Structure Of An S. Pombe AptxDNAAMPZN COMPLEX
Length = 206
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 56 VVYEDDKVLAFRDIDPQAPTHILIIPK 82
V+Y DD V+ RD+ P++ H+L++ +
Sbjct: 25 VIYYDDDVVLVRDMFPKSKMHLLLMTR 51
>pdb|3SP4|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 From
Schizosaccharomyces Pombe
pdb|3SP4|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 From
Schizosaccharomyces Pombe
Length = 204
Score = 29.3 bits (64), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 56 VVYEDDKVLAFRDIDPQAPTHILIIPK 82
V+Y DD V+ RD+ P++ H+L++ +
Sbjct: 23 VIYYDDDVVLVRDMFPKSKMHLLLMTR 49
>pdb|3SPD|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|C Chain C, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|D Chain D, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPL|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|C Chain C, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|D Chain D, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
Length = 204
Score = 29.3 bits (64), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 56 VVYEDDKVLAFRDIDPQAPTHILIIPK 82
V+Y DD V+ RD+ P++ H+L++ +
Sbjct: 23 VIYYDDDVVLVRDMFPKSKMHLLLMTR 49
>pdb|2AHV|A Chain A, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 1
pdb|2AHV|B Chain B, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 1
pdb|2AHV|C Chain C, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 1
pdb|2AHV|D Chain D, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 1
pdb|2AHW|A Chain A, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 2
pdb|2AHW|B Chain B, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 2
pdb|2AHW|C Chain C, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 2
pdb|2AHW|D Chain D, Crystal Structure Of Acyl-Coa Transferase From E. Coli
O157:h7 (Ydif)- Thioester Complex With Coa- 2
Length = 531
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 110 LVAKQEGLEDGFRIVINDGPNGG 132
LVA++EG D F + + GP GG
Sbjct: 317 LVAREEGCADDFILTVETGPIGG 339
>pdb|2AHU|A Chain A, Crystal Structure Of Acyl-coa Transferase (ydif) Apoenzyme
From Escherichia Coli O157:h7.
pdb|2AHU|B Chain B, Crystal Structure Of Acyl-coa Transferase (ydif) Apoenzyme
From Escherichia Coli O157:h7.
pdb|2AHU|C Chain C, Crystal Structure Of Acyl-coa Transferase (ydif) Apoenzyme
From Escherichia Coli O157:h7.
pdb|2AHU|D Chain D, Crystal Structure Of Acyl-coa Transferase (ydif) Apoenzyme
From Escherichia Coli O157:h7
Length = 531
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 110 LVAKQEGLEDGFRIVINDGPNGG 132
LVA++EG D F + + GP GG
Sbjct: 317 LVAREEGCADDFILTVETGPIGG 339
>pdb|3U0R|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals
Protein- Protein Interaction Modules
Length = 507
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 30 EAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTG 89
E A+ + + T+ D+++ KE+ ++ E KVL D +L + K+ GL
Sbjct: 152 ERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLE----DVTGEEFVLFM-KILSGLKS 206
Query: 90 LSKAEERHCEILGRLLYTAKLVAKQEGLEDGF 121
L R +LVA+Q LE F
Sbjct: 207 LQTVSGRQ--------QLVELVAEQADLEQTF 230
>pdb|2VZF|A Chain A, Crystal Structures Of Nadh:fmn Oxidoreductase (Emob)-Apo
Form
pdb|2VZH|A Chain A, Structures Of Nadh:fmn Oxidoreductase (Emob)-Fmn Complex
pdb|2VZJ|A Chain A, Crystal Structures Of Nadh:fmn Oxidoreductase (Emob)-Fmn,
Nadh Complex
Length = 197
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 119 DGFRIVINDGPNGGHFSHPRP 139
D FR+ ++ P+ H HPRP
Sbjct: 169 DHFRLSLSSEPSTRHLGHPRP 189
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 87 LTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDG 128
LT S E R+ G L Y + V K E LEDG +VI +G
Sbjct: 288 LTTFSIVESRY---RGDLAYFVESVRKIEELEDGDTVVIMEG 326
>pdb|2Y6P|A Chain A, Evidence For A Two-Metal-Ion-Mechanism In The
Kdo-Cytidylyltransferase Kdsb
pdb|2Y6P|B Chain B, Evidence For A Two-Metal-Ion-Mechanism In The
Kdo-Cytidylyltransferase Kdsb
pdb|2Y6P|C Chain C, Evidence For A Two-Metal-Ion-Mechanism In The
Kdo-Cytidylyltransferase Kdsb
Length = 234
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
Query: 4 ENISSTSSRLAVLTSHLSAVVMASENEAAVAAVPSDSPTIFDK------------IINKE 51
E + T R+ +L + V E+ V PSD P+ D+ IIN +
Sbjct: 35 EGLVKTGERV-ILATDSERVKEVVEDLCEVFLTPSDLPSGSDRVLYVVRDLDVDLIINYQ 93
Query: 52 IPSKVVYEDDKVLAFRDID 70
VYE+D L FR+++
Sbjct: 94 GDEPFVYEEDIKLIFRELE 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,513,643
Number of Sequences: 62578
Number of extensions: 177239
Number of successful extensions: 368
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 320
Number of HSP's gapped (non-prelim): 39
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)