Query 031749
Match_columns 153
No_of_seqs 191 out of 1125
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:49:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3275 Zinc-binding protein o 100.0 3E-32 6.5E-37 187.2 12.0 115 27-143 3-120 (127)
2 PRK10687 purine nucleoside pho 100.0 2.7E-32 5.8E-37 192.6 11.4 103 40-144 3-109 (119)
3 COG0537 Hit Diadenosine tetrap 100.0 5.1E-32 1.1E-36 195.7 12.5 107 40-151 1-113 (138)
4 cd01276 PKCI_related Protein K 100.0 2E-30 4.3E-35 178.2 11.9 100 41-142 1-104 (104)
5 cd01275 FHIT FHIT (fragile his 100.0 1.5E-29 3.3E-34 179.8 12.1 106 42-149 1-110 (126)
6 cd01277 HINT_subgroup HINT (hi 100.0 3.8E-29 8.3E-34 171.2 11.7 100 41-142 1-103 (103)
7 PRK11720 galactose-1-phosphate 100.0 2.6E-29 5.7E-34 205.3 10.2 137 6-144 160-304 (346)
8 cd00608 GalT Galactose-1-phosp 100.0 3.9E-29 8.5E-34 203.4 11.0 142 6-149 150-301 (329)
9 TIGR00209 galT_1 galactose-1-p 100.0 5.9E-29 1.3E-33 203.4 10.5 137 6-144 160-304 (347)
10 PLN02643 ADP-glucose phosphory 99.9 1.1E-27 2.3E-32 195.3 10.4 134 6-145 164-305 (336)
11 cd01278 aprataxin_related apra 99.9 1.4E-25 3.1E-30 154.2 11.5 98 41-140 1-103 (104)
12 PF01230 HIT: HIT domain; Int 99.9 1.7E-25 3.8E-30 152.3 9.4 91 49-144 1-97 (98)
13 cd00468 HIT_like HIT family: H 99.9 1.1E-21 2.3E-26 129.9 9.3 80 57-141 1-86 (86)
14 KOG3379 Diadenosine polyphosph 99.8 2.8E-20 6E-25 131.5 10.0 94 53-148 16-112 (150)
15 PF11969 DcpS_C: Scavenger mRN 99.8 1.3E-19 2.9E-24 127.3 8.0 105 41-148 1-111 (116)
16 COG1085 GalT Galactose-1-phosp 99.8 7.4E-19 1.6E-23 142.1 7.5 134 6-141 151-291 (338)
17 PF02744 GalP_UDP_tr_C: Galact 99.7 4.6E-18 1E-22 126.3 5.2 110 30-141 2-119 (166)
18 KOG2958 Galactose-1-phosphate 99.6 3.6E-16 7.9E-21 123.2 6.0 131 9-141 168-308 (354)
19 KOG4359 Protein kinase C inhib 99.6 2.6E-14 5.6E-19 101.6 9.5 105 35-141 26-135 (166)
20 PF04677 CwfJ_C_1: Protein sim 99.2 4.2E-10 9E-15 79.6 11.6 101 38-143 9-109 (121)
21 KOG2476 Uncharacterized conser 98.6 4.4E-07 9.5E-12 76.1 11.0 103 37-144 316-418 (528)
22 KOG0562 Predicted hydrolase (H 98.3 1.5E-06 3.3E-11 63.9 5.0 87 53-141 14-104 (184)
23 KOG2477 Uncharacterized conser 97.4 0.0014 3.1E-08 56.0 9.0 77 38-116 405-482 (628)
24 PLN03103 GDP-L-galactose-hexos 96.8 0.0062 1.3E-07 51.1 7.7 70 59-140 167-240 (403)
25 PRK05471 CDP-diacylglycerol py 96.7 0.014 3E-07 46.1 8.4 98 40-139 40-143 (252)
26 TIGR00672 cdh CDP-diacylglycer 96.7 0.012 2.7E-07 46.3 8.1 98 40-139 39-142 (250)
27 PF02611 CDH: CDP-diacylglycer 96.2 0.029 6.3E-07 43.6 7.6 85 53-139 25-114 (222)
28 KOG3969 Uncharacterized conser 95.9 0.12 2.7E-06 41.3 9.9 91 52-144 158-259 (310)
29 cd00608 GalT Galactose-1-phosp 95.5 0.068 1.5E-06 43.7 7.4 58 76-138 95-156 (329)
30 COG2134 Cdh CDP-diacylglycerol 94.0 0.53 1.2E-05 36.3 8.3 98 40-139 40-143 (252)
31 PLN02643 ADP-glucose phosphory 93.8 0.45 9.8E-06 39.2 8.3 58 76-138 109-170 (336)
32 KOG2720 Predicted hydrolase (H 93.5 0.11 2.3E-06 43.0 4.0 25 59-84 165-189 (431)
33 PRK11720 galactose-1-phosphate 92.5 0.71 1.5E-05 38.2 7.6 58 76-138 107-166 (346)
34 COG1085 GalT Galactose-1-phosp 92.5 0.6 1.3E-05 38.5 7.0 96 38-138 38-157 (338)
35 TIGR00209 galT_1 galactose-1-p 91.7 1.4 3E-05 36.5 8.4 58 76-138 107-166 (347)
36 COG4360 APA2 ATP adenylyltrans 89.0 0.62 1.4E-05 36.8 3.9 70 60-142 91-163 (298)
37 PF14317 YcxB: YcxB-like prote 74.0 7.6 0.00016 22.7 3.9 26 55-84 23-48 (62)
38 COG5075 Uncharacterized conser 55.0 23 0.00049 28.2 4.1 50 51-101 152-209 (305)
39 PF01087 GalP_UDP_transf: Gala 52.4 25 0.00053 26.2 3.9 55 76-135 112-169 (183)
40 COG1943 Transposase and inacti 49.9 40 0.00086 24.0 4.5 37 71-115 10-46 (136)
41 KOG2958 Galactose-1-phosphate 48.4 56 0.0012 26.8 5.5 117 19-138 25-171 (354)
42 PRK05270 galactose-1-phosphate 46.6 1.1E+02 0.0024 26.7 7.3 102 13-128 144-258 (493)
43 TIGR01239 galT_2 galactose-1-p 42.1 1.3E+02 0.0027 26.3 7.0 102 13-128 141-255 (489)
44 smart00538 POP4 A domain found 40.0 53 0.0011 21.8 3.6 28 53-84 30-57 (92)
45 cd01617 DCX Ubiquitin-like dom 37.8 78 0.0017 20.2 4.1 28 62-91 2-29 (80)
46 PF04270 Strep_his_triad: Stre 36.9 95 0.0021 18.6 5.1 27 53-84 11-37 (53)
47 smart00537 DCX Domain in the D 36.4 45 0.00097 21.9 2.8 29 62-92 7-35 (89)
48 PRK03879 ribonuclease P protei 35.6 68 0.0015 21.6 3.6 27 53-84 32-58 (96)
49 PF03432 Relaxase: Relaxase/Mo 34.1 98 0.0021 23.4 4.9 41 103-146 73-115 (242)
50 PF06156 DUF972: Protein of un 32.3 20 0.00044 24.6 0.6 9 38-46 98-106 (107)
51 COG0537 Hit Diadenosine tetrap 30.7 60 0.0013 23.1 2.9 13 101-113 64-76 (138)
52 PF04134 DUF393: Protein of un 29.9 14 0.00031 24.7 -0.4 10 38-47 3-12 (114)
53 PRK09710 lar restriction allev 27.3 71 0.0015 19.9 2.4 12 36-47 3-14 (64)
54 TIGR03793 TOMM_pelo TOMM prope 26.9 64 0.0014 20.8 2.3 19 74-97 52-70 (77)
55 TIGR01827 gatC_rel Asp-tRNA(As 26.3 35 0.00076 21.8 0.9 20 65-84 51-70 (73)
56 PF01868 UPF0086: Domain of un 25.7 1E+02 0.0022 20.2 3.2 27 54-84 32-58 (89)
57 COG4997 Uncharacterized conser 24.4 1E+02 0.0022 20.4 2.9 23 94-116 50-72 (95)
58 PF00552 IN_DBD_C: Integrase D 24.2 1.3E+02 0.0029 18.0 3.2 29 53-84 21-49 (55)
59 PF01076 Mob_Pre: Plasmid reco 23.3 3.2E+02 0.007 20.4 6.0 47 100-147 99-146 (196)
60 PF15632 ATPgrasp_Ter: ATP-gra 23.0 4.3E+02 0.0094 21.8 7.2 65 74-146 219-284 (329)
61 PF11834 DUF3354: Domain of un 22.6 1.1E+02 0.0024 19.3 2.7 48 17-65 20-68 (69)
62 cd00165 S4 S4/Hsp/ tRNA synthe 22.4 63 0.0014 18.5 1.6 13 54-66 57-69 (70)
63 PHA02458 A protein A*; Reviewe 21.4 1.2E+02 0.0026 24.1 3.2 42 98-140 45-95 (341)
No 1
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=100.00 E-value=3e-32 Score=187.18 Aligned_cols=115 Identities=55% Similarity=0.800 Sum_probs=105.0
Q ss_pred hHHHHhhhcCCCCCCCeeeecccCcCCccEEEECCeEEEEecCCCCCCceEEEEecccCCCCCcccchhchHHHHHHHHH
Q 031749 27 SENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLY 106 (153)
Q Consensus 27 ~~~~~~~~~~~~~~~C~FC~ii~~e~~~~iV~e~e~~~a~~d~~P~~pgH~LViPk~H~~v~~l~dL~~~e~~~l~~l~~ 106 (153)
.|.+.|+.....+.+|+||+|+++|+|+.+||||+.++||.|..|.+|||+|||||+| ++.++.+.+.+.+.++++|.
T Consensus 3 ~e~~~a~~a~~~~~~tIF~kIi~keIPa~ii~Edd~~lAF~Di~Pqap~HfLvIPK~h--i~~~s~aed~~~e~Lg~ll~ 80 (127)
T KOG3275|consen 3 SEVEKAQTAAAGAAPTIFCKIIRKEIPAKIIFEDDRCLAFHDIAPQAPGHFLVIPKKH--ITQLSKAEDRDDELLGHLLP 80 (127)
T ss_pred chHHHHhhhcccCCCcEeeeeecccCCcceEeeccceEEEEecCCCCCceEEEeeccc--ccchhhcccCCHHHHHHHHH
Confidence 3455566555568899999999999999999999999999999999999999999999 99999888888999999999
Q ss_pred HHHHHHHHhCCCCcEEEEeecCCCccce---eeEEecCCC
Q 031749 107 TAKLVAKQEGLEDGFRIVINDGPNGGHF---SHPRPPPRR 143 (153)
Q Consensus 107 ~~~~~~~~l~~~~g~ni~~n~g~~agq~---vH~HiiPR~ 143 (153)
+++++++++|..+|||+++|||..+.|+ +|+||+|++
T Consensus 81 ~~k~vak~~Gl~~gYrvv~NnG~~g~QsV~HvH~HvlgGr 120 (127)
T KOG3275|consen 81 VAKKVAKALGLEDGYRVVQNNGKDGHQSVYHVHLHVLGGR 120 (127)
T ss_pred HHHHHHHHhCcccceeEEEcCCcccceEEEEEEEEEeCCc
Confidence 9999999999989999999999999997 589999954
No 2
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=99.98 E-value=2.7e-32 Score=192.59 Aligned_cols=103 Identities=47% Similarity=0.782 Sum_probs=95.3
Q ss_pred CCCeeeecccCcCCccEEEECCeEEEEecCCCCCCceEEEEecccCCCCCcccchhchHHHHHHHHHHHHHHHHHhC-CC
Q 031749 40 SPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEG-LE 118 (153)
Q Consensus 40 ~~C~FC~ii~~e~~~~iV~e~e~~~a~~d~~P~~pgH~LViPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l~-~~ 118 (153)
++|+||+|++|+.|+.+|||||.++||+|.+|.++||+|||||+| +++++||++++..++.+++..+++++++.+ .+
T Consensus 3 ~~CiFC~I~~g~~p~~~v~edd~~~aflD~~P~~~GH~LViPK~H--~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~ 80 (119)
T PRK10687 3 EETIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIIPNIL--IPTVNDVSAEHEQALGRMITVAAKIAEQEGIAE 80 (119)
T ss_pred CCCchhhhhcCCCCCCEEEECCCEEEEEcCCCCCCccEEEEehhH--hCChhHCChHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 579999999999999999999999999999999999999999999 999999999888899999998888877654 46
Q ss_pred CcEEEEeecCCCccce---eeEEecCCCC
Q 031749 119 DGFRIVINDGPNGGHF---SHPRPPPRRT 144 (153)
Q Consensus 119 ~g~ni~~n~g~~agq~---vH~HiiPR~~ 144 (153)
+|||+++|+|+.+||+ +|+|||||+.
T Consensus 81 ~g~~l~~n~G~~agQ~V~HlHiHvI~g~~ 109 (119)
T PRK10687 81 DGYRLIMNTNRHGGQEVYHIHMHLLGGRP 109 (119)
T ss_pred CceEEEEeCCCcCCcccCEEEEEECCCcc
Confidence 8999999999999996 6999999876
No 3
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=99.98 E-value=5.1e-32 Score=195.70 Aligned_cols=107 Identities=42% Similarity=0.592 Sum_probs=94.5
Q ss_pred CCCeeeecccCcCCccEEEECCeEEEEecCCCCCCceEEEEecccCCCCCcccchhchHHHHHHHHHHHHHHHHHh---C
Q 031749 40 SPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQE---G 116 (153)
Q Consensus 40 ~~C~FC~ii~~e~~~~iV~e~e~~~a~~d~~P~~pgH~LViPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l---~ 116 (153)
+.|+||+|++++.|+.+||||++++||+|.+|.++||+|||||+| +.+++++++ +++++|+..++++++++ .
T Consensus 1 ~~ciFc~ii~~e~~~~~Vye~~~~~afld~~P~~~gH~LviPk~h--~~~l~~l~~---~~~~~l~~~~~~ia~al~~~~ 75 (138)
T COG0537 1 MMCIFCKIIRGEIPANKVYEDEHVLAFLDIYPAAPGHTLVIPKRH--VSDLEDLDP---EELAELFLLAQKIAKALKEAF 75 (138)
T ss_pred CCceeeeeecCCCCceEEEeCCCEEEEecCCCCCCCeEEEEeccc--hhhhhhCCH---HHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999999999999999999999999999 999999886 56667777777777665 3
Q ss_pred CCCcEEEEeecCCCccce---eeEEecCCCCCCCCCCC
Q 031749 117 LEDGFRIVINDGPNGGHF---SHPRPPPRRTTNELAPG 151 (153)
Q Consensus 117 ~~~g~ni~~n~g~~agq~---vH~HiiPR~~~d~~~~~ 151 (153)
.++|||+++|+|..+||. +|||||||+.+|..+++
T Consensus 76 ~~~g~ni~~N~g~~agq~V~HlH~HvIPr~~~d~~~~~ 113 (138)
T COG0537 76 GADGYNIGINNGKAAGQEVFHLHIHIIPRYKGDDNFPG 113 (138)
T ss_pred CCCceEEEEecCcccCcCcceEEEEEcCCcCCCCCccc
Confidence 478999999999999976 69999999999877743
No 4
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=99.97 E-value=2e-30 Score=178.25 Aligned_cols=100 Identities=55% Similarity=0.812 Sum_probs=93.7
Q ss_pred CCeeeecccCcCCccEEEECCeEEEEecCCCCCCceEEEEecccCCCCCcccchhchHHHHHHHHHHHHHHHHHhCC-CC
Q 031749 41 PTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL-ED 119 (153)
Q Consensus 41 ~C~FC~ii~~e~~~~iV~e~e~~~a~~d~~P~~pgH~LViPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l~~-~~ 119 (153)
+|+||+++++|.+.++||||+.++||+|.+|.+|||+||+||+| ++++.||++++.++++++++.++++.+.++. ++
T Consensus 1 ~C~fc~i~~~e~~~~iv~e~~~~~a~~~~~p~~~gh~lIiPk~H--~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~ 78 (104)
T cd01276 1 DCIFCKIIRGEIPAKKVYEDDEVLAFHDINPQAPVHILVIPKKH--IASLSDATEEDEELLGHLLSAAAKVAKDLGIAED 78 (104)
T ss_pred CCcceecccCCCccCEEEECCCEEEEECCCCCCCCEEEEEecce--eCChHHcccccHHHHHHHHHHHHHHHHHhCCCCC
Confidence 59999999999999999999999999999999999999999999 9999999999999999999999999998864 67
Q ss_pred cEEEEeecCCCccce---eeEEecCC
Q 031749 120 GFRIVINDGPNGGHF---SHPRPPPR 142 (153)
Q Consensus 120 g~ni~~n~g~~agq~---vH~HiiPR 142 (153)
|||+++|+|+.+||+ +|+|||+|
T Consensus 79 ~~n~~~~~g~~~g~~v~H~HiHii~~ 104 (104)
T cd01276 79 GYRLVINCGKDGGQEVFHLHLHLLGG 104 (104)
T ss_pred CEEEEEeCCCCCCCceeEEEEEEeCC
Confidence 999999999999885 68999986
No 5
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.96 E-value=1.5e-29 Score=179.84 Aligned_cols=106 Identities=27% Similarity=0.333 Sum_probs=93.4
Q ss_pred CeeeecccCcCC-ccEEEECCeEEEEecCCCCCCceEEEEecccCCCCCcccchhchHHHHHHHHHHHHHHHHHhCCCCc
Q 031749 42 TIFDKIINKEIP-SKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDG 120 (153)
Q Consensus 42 C~FC~ii~~e~~-~~iV~e~e~~~a~~d~~P~~pgH~LViPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l~~~~g 120 (153)
|+||++++++.+ .++|||+++++||+|.+|.+|||+||+||+| ++++.+|++++..++..++..+.+.+++...++|
T Consensus 1 C~fC~i~~~e~~~~~iv~e~~~~~~~~~~~p~~~gh~lIiPk~H--~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~ 78 (126)
T cd01275 1 CVFCDIPIKPDEDNLVFYRTKHSFAVVNLYPYNPGHVLVVPYRH--VPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDG 78 (126)
T ss_pred CccccCccCCCccccEEEeCCCEEEEEcCCCCCCCcEEEEeccc--cCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 999999999876 7999999999999999999999999999999 9999999988888877777755556666555789
Q ss_pred EEEEeecCCCccce---eeEEecCCCCCCCCC
Q 031749 121 FRIVINDGPNGGHF---SHPRPPPRRTTNELA 149 (153)
Q Consensus 121 ~ni~~n~g~~agq~---vH~HiiPR~~~d~~~ 149 (153)
||+++|+|+.+||+ +|+|||||+++|..+
T Consensus 79 ~n~~~~~g~~~gq~v~H~HiHiiPR~~~d~~~ 110 (126)
T cd01275 79 FNIGINDGKAGGGIVPHVHIHIVPRWNGDTNF 110 (126)
T ss_pred eEEEEeCCcccCCCcCEEEEEEeCCcCCCCCC
Confidence 99999999988875 699999999988654
No 6
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.96 E-value=3.8e-29 Score=171.25 Aligned_cols=100 Identities=38% Similarity=0.501 Sum_probs=87.3
Q ss_pred CCeeeecccCcCCccEEEECCeEEEEecCCCCCCceEEEEecccCCCCCcccchhchHHHHHHHHHHHHHHHHHhCCCCc
Q 031749 41 PTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDG 120 (153)
Q Consensus 41 ~C~FC~ii~~e~~~~iV~e~e~~~a~~d~~P~~pgH~LViPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l~~~~g 120 (153)
+|+||+++++|.+.++|+|+++++||+|.+|.+|||+||+||+| ++++.||++++..+++.+++.+.+.+++...++|
T Consensus 1 ~C~~c~ii~~e~~~~iv~e~~~~~a~~~~~~~~pg~~lI~Pk~H--~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~ 78 (103)
T cd01277 1 DCIFCKIIAGEIPSYKVYEDDHVLAFLDINPASKGHTLVIPKKH--YENLLDLDPEELAELILAAKKVARALKKALKADG 78 (103)
T ss_pred CCccccccCCCCCCCEEEeCCCEEEEECCCCCCCeeEEEEeccc--cCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 59999999999888999999999999999999999999999999 9999999987777777777655555555445679
Q ss_pred EEEEeecCCCccce---eeEEecCC
Q 031749 121 FRIVINDGPNGGHF---SHPRPPPR 142 (153)
Q Consensus 121 ~ni~~n~g~~agq~---vH~HiiPR 142 (153)
||+++|+|+.+||. +|+||+||
T Consensus 79 ~n~~~~~~~~~g~~~~H~HiHiiPR 103 (103)
T cd01277 79 LNILQNNGRAAGQVVFHVHVHVIPR 103 (103)
T ss_pred eEEEEeCCcccCcccCEEEEEEccC
Confidence 99999999987764 79999998
No 7
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=99.96 E-value=2.6e-29 Score=205.34 Aligned_cols=137 Identities=14% Similarity=0.135 Sum_probs=117.4
Q ss_pred cccccchhhhhcccccchhhhhHHHHhhhcCCCCCCCeeeecccCcCC--ccEEEECCeEEEEecCCCCCCceEEEEecc
Q 031749 6 ISSTSSRLAVLTSHLSAVVMASENEAAVAAVPSDSPTIFDKIINKEIP--SKVVYEDDKVLAFRDIDPQAPTHILIIPKV 83 (153)
Q Consensus 6 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~FC~ii~~e~~--~~iV~e~e~~~a~~d~~P~~pgH~LViPk~ 83 (153)
-|-.=++.|++++.++|..+..+++++++|++..+.|+||+|+++|.+ .++|+||++|+||+|++|.+|||+||+||+
T Consensus 160 aSl~HPH~Qi~a~p~vP~~~~~e~~~~~~y~~~~g~Clfcdii~~E~~~~~RiV~End~fvAf~p~~p~~P~h~lIiPKr 239 (346)
T PRK11720 160 CSNPHPHGQIWANSFLPNEAEREDRLQRAYFAEHGSPLLVDYVQRELADGERIVVETEHWLAVVPYWAAWPFETLLLPKA 239 (346)
T ss_pred cCCCCCceeeeeCCCCChHHHHHHHHHHHHHHHcCCeEHHHHHHhhhhcCCeEEEECCCEEEEeccccCCCCeEEEeccc
Confidence 455668899999999999999999999999999999999999999876 599999999999999999999999999999
Q ss_pred cCCCCCcccchhchHHHHHHHHH-HHHHHHHHhCCCCcEEEEeecCCCccc-----eeeEEecCCCC
Q 031749 84 KDGLTGLSKAEERHCEILGRLLY-TAKLVAKQEGLEDGFRIVINDGPNGGH-----FSHPRPPPRRT 144 (153)
Q Consensus 84 H~~v~~l~dL~~~e~~~l~~l~~-~~~~~~~~l~~~~g~ni~~n~g~~agq-----~vH~HiiPR~~ 144 (153)
| +.+|.+|++++...++++++ +++++-+.++...+||+++|+++.+++ |+|+||+||+.
T Consensus 240 H--~~~~~dl~dee~~~La~~lk~v~~~l~~~~~~~~pyn~~~h~~p~~~~~~~~~H~HihiiPrl~ 304 (346)
T PRK11720 240 H--VLRLTDLTDAQRDDLALALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENDHWQLHAHFYPPLL 304 (346)
T ss_pred C--CCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeEEecccCCCCCeeEEEEEEEeCCcc
Confidence 9 99999999877777777776 344343444444579999999997653 36788999965
No 8
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=99.96 E-value=3.9e-29 Score=203.42 Aligned_cols=142 Identities=17% Similarity=0.207 Sum_probs=122.4
Q ss_pred cccccchhhhhcccccchhhhhHHHHhhhcCCCCCCCeeeecccCcCC--ccEEEECCeEEEEecCCCCCCceEEEEecc
Q 031749 6 ISSTSSRLAVLTSHLSAVVMASENEAAVAAVPSDSPTIFDKIINKEIP--SKVVYEDDKVLAFRDIDPQAPTHILIIPKV 83 (153)
Q Consensus 6 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~FC~ii~~e~~--~~iV~e~e~~~a~~d~~P~~pgH~LViPk~ 83 (153)
-|..-++.|+++..++|.++..+++.+++|+...+.|+||+++++|.+ .++||||++|+||+|++|.+|||+||+||+
T Consensus 150 aSl~HpH~Qi~a~~~vp~~~~~e~~~~~~y~~~~g~clfcdii~~E~~~~~riV~end~~va~~p~~~~~P~e~lIiPKr 229 (329)
T cd00608 150 ASLPHPHGQIWALPFLPPEVARELRNQKAYYEKHGRCLLCDYLKLELESKERIVVENEHFVAVVPFWARWPFEVHILPKR 229 (329)
T ss_pred cCCCCCCeeeeeCCcCChHHHHHHHHHHHHHHHcCCccHHHHHHhhhhcCCeEEEeCCCEEEEEecCCCCCcEEEEecCC
Confidence 466678999999999999999999999999999999999999999876 799999999999999999999999999999
Q ss_pred cCCCCCcccchhchHHHHHHHHHHHH-HHHHHhCCCCcEEEEeecCCCcc----c---eeeEEecCCCCCCCCC
Q 031749 84 KDGLTGLSKAEERHCEILGRLLYTAK-LVAKQEGLEDGFRIVINDGPNGG----H---FSHPRPPPRRTTNELA 149 (153)
Q Consensus 84 H~~v~~l~dL~~~e~~~l~~l~~~~~-~~~~~l~~~~g~ni~~n~g~~ag----q---~vH~HiiPR~~~d~~~ 149 (153)
| +.++.+|++++...|+++++.+. ++.+.++...+||+++|+++.++ | |+|+||+||+.++.++
T Consensus 230 H--~~~~~dl~~~e~~~La~~l~~v~~~l~~~~~~~~pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr~~~~~~~ 301 (329)
T cd00608 230 H--VSRFTDLTDEEREDLAEILKRLLARYDNLFNCSFPYSMGWHQAPTGGKELENWYYHWHFEIPPRRSATVLK 301 (329)
T ss_pred C--cCChhHCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeccCCCCCcCCcceEEEEEEeCCCcCCCcee
Confidence 9 99999999988888888777444 44344443569999999998765 3 4688899998766543
No 9
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=99.96 E-value=5.9e-29 Score=203.35 Aligned_cols=137 Identities=12% Similarity=0.125 Sum_probs=117.1
Q ss_pred cccccchhhhhcccccchhhhhHHHHhhhcCCCCCCCeeeecccCcC--CccEEEECCeEEEEecCCCCCCceEEEEecc
Q 031749 6 ISSTSSRLAVLTSHLSAVVMASENEAAVAAVPSDSPTIFDKIINKEI--PSKVVYEDDKVLAFRDIDPQAPTHILIIPKV 83 (153)
Q Consensus 6 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~FC~ii~~e~--~~~iV~e~e~~~a~~d~~P~~pgH~LViPk~ 83 (153)
-|-.=++.|+.+..++|.++..|++.+++|++..+.|+||+|+++|. +.++||||++|+||+|++|.+|||+||+||+
T Consensus 160 aSl~HPH~Qi~a~p~vP~~~~~e~~~~~~y~~~~g~clfcdIi~~E~~~~~riV~End~fvAf~p~~p~~Pgh~lIiPKr 239 (347)
T TIGR00209 160 CSNPHPHGQIWANSFLPNEVEREDRLQKEYFAEHKSPMLVDYVKRELADKSRTVVETEHWIAVVPYWAIWPFETLLLPKA 239 (347)
T ss_pred cCCCCCceeeeeCCCCChHHHHHHHHHHHHHHHcCCccHHHHHHhHhhcCCeEEEECCCEEEEeccCCCCCCeEEEeecc
Confidence 35556789999999999999999999999999999999999999987 4799999999999999999999999999999
Q ss_pred cCCCCCcccchhchHHHHHHHHHH-HHHHHHHhCCCCcEEEEeecCCCccce-----eeEEecCCCC
Q 031749 84 KDGLTGLSKAEERHCEILGRLLYT-AKLVAKQEGLEDGFRIVINDGPNGGHF-----SHPRPPPRRT 144 (153)
Q Consensus 84 H~~v~~l~dL~~~e~~~l~~l~~~-~~~~~~~l~~~~g~ni~~n~g~~agq~-----vH~HiiPR~~ 144 (153)
| +.+|.+|++++..+++.+++. ++++.+.++...+||+++|+++.+++. +|+||+||+.
T Consensus 240 H--~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~~~~pYn~~~h~~p~~~~~~~~~H~HihiiPrl~ 304 (347)
T TIGR00209 240 H--VLRITDLTDAQRSDLALILKKLTSKYDNLFETSFPYSMGWHGAPFNGEENQHWQLHAHFYPPLL 304 (347)
T ss_pred C--CCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEecccCCCCCcEEEEEEEEeCCcc
Confidence 9 999999998777777776663 333334444444899999999987652 6888999964
No 10
>PLN02643 ADP-glucose phosphorylase
Probab=99.95 E-value=1.1e-27 Score=195.29 Aligned_cols=134 Identities=15% Similarity=0.263 Sum_probs=116.6
Q ss_pred cccccchhhhhcccccchhhhhHHHHhhhcCCCCCCCeeeecccCcCCccEEEECCeEEEEecCCCCCCceEEEEecccC
Q 031749 6 ISSTSSRLAVLTSHLSAVVMASENEAAVAAVPSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKD 85 (153)
Q Consensus 6 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~FC~ii~~e~~~~iV~e~e~~~a~~d~~P~~pgH~LViPk~H~ 85 (153)
-|-.-++.|+.++.++|..+..+++.+++|++..+.|+||+|+++|. +|+||++|+||+|++|.+|||+||+||+|
T Consensus 164 aSl~HPH~Qi~a~~~vP~~~~~el~~~~~y~~~~g~Clfcdii~~E~---iV~en~~f~Af~p~ap~~P~evlIiPKrH- 239 (336)
T PLN02643 164 ASMSHSHSQIIALPVVPPSVSARLDGSKEYFEKTGKCSLCEVVKKDL---LIDESSHFVSIAPFAATFPFEIWIIPRDH- 239 (336)
T ss_pred cCCCCCceeeEecCcCChHHHHHHHHHHHHHHHhCCCcHHHHHhCcc---EEEeCCCEEEEeccccCCCCEEEEEeccc-
Confidence 45667889999999999999999999999999999999999999886 99999999999999999999999999999
Q ss_pred CCCCcccchhchHHHHHHHHH-HHHHHHHHhCCCCcEEEEeecCCCc--cc---eee--EEecCCCCC
Q 031749 86 GLTGLSKAEERHCEILGRLLY-TAKLVAKQEGLEDGFRIVINDGPNG--GH---FSH--PRPPPRRTT 145 (153)
Q Consensus 86 ~v~~l~dL~~~e~~~l~~l~~-~~~~~~~~l~~~~g~ni~~n~g~~a--gq---~vH--~HiiPR~~~ 145 (153)
+.++.+|++++...|+++++ +++++.+.++.+ +||+++|+|+.. +| ++| +||+||.+.
T Consensus 240 -~~~~~dl~~~e~~~La~ilk~v~~~l~~~~~~~-pyN~~~~~~P~~~~~~~~~~~H~hihi~PRl~~ 305 (336)
T PLN02643 240 -SSNFHEIDDDKAVDLGGLLKLMLQKISKQLNDP-PYNYMIQTSPLGVEESNLPYTHWFLQIVPQLSG 305 (336)
T ss_pred -cCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCC-CceeeeecCCCccccCcccceEEEEEEecCcCC
Confidence 99999999988888888777 444554555555 999999999973 33 344 589999976
No 11
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.93 E-value=1.4e-25 Score=154.22 Aligned_cols=98 Identities=26% Similarity=0.361 Sum_probs=84.5
Q ss_pred CCeeeecccCcC--CccEEEECCeEEEEecCCCCCCceEEEEecccCCCCCcccchhchHHHHHHHHHHHHHHHHHh-C-
Q 031749 41 PTIFDKIINKEI--PSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQE-G- 116 (153)
Q Consensus 41 ~C~FC~ii~~e~--~~~iV~e~e~~~a~~d~~P~~pgH~LViPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l-~- 116 (153)
.|+||+++++|. +.++|||++.++||+|++|.+|||+||+||+| +.++.+|++++.++++++++.+.+.++.. +
T Consensus 1 ~c~fc~i~~~e~~~~~~iv~~~~~~~a~~~~~p~~~~h~lIiPk~h--~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~ 78 (104)
T cd01278 1 LCHFCDIAKRRDPDPEDQVYEDDRVVVFKDIYPKARHHYLVIPKEH--IASLKALTKEDVPLLEHMETVGREKLLRSDNT 78 (104)
T ss_pred CCccccCccCCCCCCccEEEeCCCEEEEECCCCCCCceEEEEecCC--CCChHHCCHhHHHHHHHHHHHHHHHHHHHcCC
Confidence 499999999886 57999999999999999999999999999999 99999999999999999999777744443 2
Q ss_pred CCCcEEEEeecCCCc-cceeeEEec
Q 031749 117 LEDGFRIVINDGPNG-GHFSHPRPP 140 (153)
Q Consensus 117 ~~~g~ni~~n~g~~a-gq~vH~Hii 140 (153)
.++|||+++|+||.. ..|+|+|||
T Consensus 79 ~~~~~n~g~h~~p~~~v~H~H~Hvi 103 (104)
T cd01278 79 DPSEFRFGFHAPPFTSVSHLHLHVI 103 (104)
T ss_pred CccCeEEEeCCCCCcCeeeEEEEee
Confidence 357999999999862 245799987
No 12
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.93 E-value=1.7e-25 Score=152.34 Aligned_cols=91 Identities=40% Similarity=0.610 Sum_probs=75.0
Q ss_pred cCcCCccEEEECCeEEEEecCCCCCCceEEEEecccCCCCCcccchhchHHHHHHHHHHHHHHHHHh---CCCCcEEEEe
Q 031749 49 NKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQE---GLEDGFRIVI 125 (153)
Q Consensus 49 ~~e~~~~iV~e~e~~~a~~d~~P~~pgH~LViPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l---~~~~g~ni~~ 125 (153)
++|.|..+||||+.++||+|.+|.+|||+||+||+| ++++.||++++.. +++.+++++.+++ ..++|||+..
T Consensus 1 ~~e~~~~vv~e~~~~~~~~~~~p~~~gh~LVipk~H--~~~l~dl~~~~~~---~l~~~~~~v~~~l~~~~~~~~~~~~~ 75 (98)
T PF01230_consen 1 RGEIPARVVYEDDHFVAFLDIFPISPGHLLVIPKRH--VESLSDLPPEERA---ELMQLVQKVAKALKEAFGPDGYNVII 75 (98)
T ss_dssp TTSSHCEEEEE-SSEEEEEESSTSSTTEEEEEESST--GSSGGGSHHHHHH---HHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCCeeEEEECCCEEEEEcCCCCCCeEEEEEeccc--ccchhcCCHHHHH---HHHHHHHHHHHHHhcccccceeeccc
Confidence 478899999999999999999999999999999999 9999999865444 5555555554443 3467999999
Q ss_pred ecCCCccce---eeEEecCCCC
Q 031749 126 NDGPNGGHF---SHPRPPPRRT 144 (153)
Q Consensus 126 n~g~~agq~---vH~HiiPR~~ 144 (153)
|+|+.+||+ +|||||||++
T Consensus 76 ~~g~~~gq~v~HlH~HviPR~~ 97 (98)
T PF01230_consen 76 NNGPAAGQSVPHLHFHVIPRYK 97 (98)
T ss_dssp EESGGGTSSSSS-EEEEEEEST
T ss_pred cchhhhcCccCEEEEEEecccC
Confidence 999999987 6999999986
No 13
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.87 E-value=1.1e-21 Score=129.91 Aligned_cols=80 Identities=33% Similarity=0.536 Sum_probs=66.6
Q ss_pred EEECCeEEEEecCCCCCCceEEEEecccCCCCCcccchhchHHHHHHHHHHHHHHHHHh---CCCCcEEEEeecCCCccc
Q 031749 57 VYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQE---GLEDGFRIVINDGPNGGH 133 (153)
Q Consensus 57 V~e~e~~~a~~d~~P~~pgH~LViPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l---~~~~g~ni~~n~g~~agq 133 (153)
||||+.++||+|++|.+|||+|||||+| +.++.+|++++ +.+++.+++++.+++ ..+++||+.+|+|+.+||
T Consensus 1 ~~e~~~~~a~~~~~p~~~gh~lIipk~H--~~~~~~l~~~~---~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~ 75 (86)
T cd00468 1 VPDDEHSFAFVNLKPAAPGHVLVCPKRH--VETLPDLDEAL---LADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQ 75 (86)
T ss_pred CeecCcEEEEECCCCCCCCcEEEeCchh--hCChhHCCHHH---HHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCC
Confidence 6999999999999999999999999999 99999998754 445555555555444 346799999999999998
Q ss_pred e---eeEEecC
Q 031749 134 F---SHPRPPP 141 (153)
Q Consensus 134 ~---vH~HiiP 141 (153)
+ +|+||||
T Consensus 76 ~v~H~H~hiiP 86 (86)
T cd00468 76 SVPHVHLHVLP 86 (86)
T ss_pred cCCEEEEEeCC
Confidence 6 6889998
No 14
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
Probab=99.83 E-value=2.8e-20 Score=131.45 Aligned_cols=94 Identities=23% Similarity=0.376 Sum_probs=79.2
Q ss_pred CccEEEECCeEEEEecCCCCCCceEEEEecccCCCCCcccchhchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecCCCcc
Q 031749 53 PSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGG 132 (153)
Q Consensus 53 ~~~iV~e~e~~~a~~d~~P~~pgH~LViPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l~~~~g~ni~~n~g~~ag 132 (153)
+..|+|++++.+||.+..|..|||+||+|+|- ++.|.||+.+|..++..-.+.+.++++.......+|+.+.+|+.||
T Consensus 16 ~~~VFykT~~sfafvNlkPvvpgHVLv~P~R~--vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AG 93 (150)
T KOG3379|consen 16 PDHVFYKTKHSFAFVNLKPVVPGHVLVSPLRV--VPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAG 93 (150)
T ss_pred cceEEEeccceEEEEeccccccceEEEecccc--ccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccC
Confidence 46899999999999999999999999999998 9999999976555554444455555666666678999999999999
Q ss_pred ce---eeEEecCCCCCCCC
Q 031749 133 HF---SHPRPPPRRTTNEL 148 (153)
Q Consensus 133 q~---vH~HiiPR~~~d~~ 148 (153)
|+ +|+||+||+.+|--
T Consensus 94 QTVpHvHvHIlPR~~gDf~ 112 (150)
T KOG3379|consen 94 QTVPHVHVHILPRKAGDFG 112 (150)
T ss_pred cccceeEEEEccccccccc
Confidence 98 59999999998854
No 15
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=99.80 E-value=1.3e-19 Score=127.28 Aligned_cols=105 Identities=32% Similarity=0.455 Sum_probs=84.5
Q ss_pred CCeeeecccCcCCccEEEECCeEEEEecCCCCCCceEEEEecc-cCCCCCcccchhchHHHHHHHHHHHHHHHHHhC---
Q 031749 41 PTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKV-KDGLTGLSKAEERHCEILGRLLYTAKLVAKQEG--- 116 (153)
Q Consensus 41 ~C~FC~ii~~e~~~~iV~e~e~~~a~~d~~P~~pgH~LViPk~-H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l~--- 116 (153)
.|+||.|.+++.+.+++|||+.|++|.|.+|.++.|+|||||+ | +.++.+|+.++.+.+.+|...++++++..+
T Consensus 1 ~cif~~i~~~~~~~~vly~d~~~v~~~D~~P~a~~H~LviPk~~~--i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~ 78 (116)
T PF11969_consen 1 NCIFCIIIRGEEPERVLYEDDDFVVFKDIYPKAPVHLLVIPKDPH--IRSLRDLTPEHLPLLERMREVARELLKEEYPGD 78 (116)
T ss_dssp HHHHHHHTTSSSGGGESEEETSEEEEE-TT-SCCEEEEEEESSSS---SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT
T ss_pred CccceEeEcCCCCCcEEEEeCCEEEeeCCCCCcCcEEEEEeecCC--CCChHHcCHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4999999999999999999999999999999999999999999 9 999999999999999999999999988764
Q ss_pred -CCCcEEEEeecCCCccceeeEEecC-CCCCCCC
Q 031749 117 -LEDGFRIVINDGPNGGHFSHPRPPP-RRTTNEL 148 (153)
Q Consensus 117 -~~~g~ni~~n~g~~agq~vH~HiiP-R~~~d~~ 148 (153)
....++++++..| ...++|+|++. .+..+.+
T Consensus 79 ~~~~~~~~gfH~~P-S~~HLHlHvi~~~~~s~~l 111 (116)
T PF11969_consen 79 LDSDDIRLGFHYPP-SVYHLHLHVISPDFDSPCL 111 (116)
T ss_dssp -EGGGEEEEEESS--SSSS-EEEEEETTS--TTS
T ss_pred cchhhhcccccCCC-CcceEEEEEccCCCcCccc
Confidence 2458999999888 44668999886 4444444
No 16
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=99.77 E-value=7.4e-19 Score=142.07 Aligned_cols=134 Identities=17% Similarity=0.215 Sum_probs=113.6
Q ss_pred cccccchhhhhcccccchhhhhHHHHhhhcCCCCCCCeeeecccCcCC--ccEEEECCeEEEEecCCCCCCceEEEEecc
Q 031749 6 ISSTSSRLAVLTSHLSAVVMASENEAAVAAVPSDSPTIFDKIINKEIP--SKVVYEDDKVLAFRDIDPQAPTHILIIPKV 83 (153)
Q Consensus 6 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~FC~ii~~e~~--~~iV~e~e~~~a~~d~~P~~pgH~LViPk~ 83 (153)
-|..-++.|+.++-++|..+.+++..+++||..++.|.||+++..|.. .|+|+|+++|+||+|+.+..|++++|+||+
T Consensus 151 ~S~~HPH~Qi~a~~~~P~~v~~e~~~~~~y~~~~~~~~~~~~ve~E~~~~~R~v~e~~~~~a~~Pf~a~~pfEv~i~pk~ 230 (338)
T COG1085 151 ASLPHPHGQIVALPVLPLEVARELRSAREYYEENGSCMYCDLVEREKGDGERIVVENDHFLAFVPFWARWPFEVLIYPKE 230 (338)
T ss_pred ccCCCCCcceeecccCChHHHHHHHHHHHHHHhcCCchHHHHHHHHhccCceEEecCceeEEeccccccCceEEEeccHH
Confidence 567778999999999999999999999999999999999999987765 599999999999999999999999999999
Q ss_pred cCCCCCcccchhchHHHHHHHHH-HHHHHHHHhCCCCcEEEEeecCCCc--cce--eeEEecC
Q 031749 84 KDGLTGLSKAEERHCEILGRLLY-TAKLVAKQEGLEDGFRIVINDGPNG--GHF--SHPRPPP 141 (153)
Q Consensus 84 H~~v~~l~dL~~~e~~~l~~l~~-~~~~~~~~l~~~~g~ni~~n~g~~a--gq~--vH~HiiP 141 (153)
| +..+.++++++.++++.+++ +..+.-+..+....|+++++..+.. .++ +|+|++|
T Consensus 231 h--v~~l~~~sdee~~~lA~ilk~~~~~y~~~~~~~fpY~m~~h~ap~~~~~~~~~~h~~~~p 291 (338)
T COG1085 231 H--VSFLTDLSDEELKDLAEILKKLLARYDNLFGNSFPYSMGFHQAPFNEVNEHYHLHAEIYP 291 (338)
T ss_pred H--hhhhhhCCHHHHHHHHHHHHHHHHHHhhccCCCCceeeeeecCCCCcccccceEEEEEcc
Confidence 9 99999999877777777666 3333333344555799999988765 222 6888999
No 17
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=99.72 E-value=4.6e-18 Score=126.30 Aligned_cols=110 Identities=19% Similarity=0.308 Sum_probs=72.2
Q ss_pred HHhhhcCCCC-CCCeeeecccCcC--CccEEEECCeEEEEecCCCCCCceEEEEecccCCCCCcccchhchHHHHHHHHH
Q 031749 30 EAAVAAVPSD-SPTIFDKIINKEI--PSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLY 106 (153)
Q Consensus 30 ~~~~~~~~~~-~~C~FC~ii~~e~--~~~iV~e~e~~~a~~d~~P~~pgH~LViPk~H~~v~~l~dL~~~e~~~l~~l~~ 106 (153)
+..+.|+.+. +.|+||++++.|. ..+||++|++|++|.|....+|+.++|+||+| +.++.++++.|...|+.+++
T Consensus 2 ~~~~~Y~~~~nGs~L~~D~~~~E~~~~~Riv~en~~f~a~vP~~a~wP~ev~ilpkrh--~~~l~~l~~~E~~dlA~~l~ 79 (166)
T PF02744_consen 2 ENFPHYFEGSNGSCLFCDHLQMELAEGERIVYENEHFVAFVPFAARWPFEVWILPKRH--VPSLADLTDEERDDLAAILK 79 (166)
T ss_dssp HHHHHHHHHH-SS-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-EEEEESS----SSGGG--HHHHHHHHHHHH
T ss_pred ccchHHHccCCCCchHHHHHHHhhcCCCEEEEECCceEEEEECcccCCcEEEEecCCC--hhhHHHhhhHHHhhHHHHHH
Confidence 4567787766 9999999987654 36999999999999999999999999999999 99999999988888888777
Q ss_pred -HHHHHHHHhCCCCcEEEEeecCCCccce----eeEEecC
Q 031749 107 -TAKLVAKQEGLEDGFRIVINDGPNGGHF----SHPRPPP 141 (153)
Q Consensus 107 -~~~~~~~~l~~~~g~ni~~n~g~~agq~----vH~HiiP 141 (153)
+++++-+....+..|++++++.|..+.. +|+|+-|
T Consensus 80 ~i~~r~d~lf~~~~pY~m~ihqaP~~~~~~~~~fH~H~e~ 119 (166)
T PF02744_consen 80 PILRRYDNLFETSFPYNMGIHQAPVNGEDPEHWFHPHFEP 119 (166)
T ss_dssp HHHHHHHHHCTS---EEEEEE---SSSS--TT--EEEEE-
T ss_pred HHHHHhcccCCCCCCCchhhhcCCCCcccchhhhhccccc
Confidence 4444433334456999999999976643 7888754
No 18
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=99.63 E-value=3.6e-16 Score=123.15 Aligned_cols=131 Identities=14% Similarity=0.119 Sum_probs=110.3
Q ss_pred ccchhhhhcccccchhhhhHHHHhhhcCCCCCCCeeeecccCc--CCccEEEECCeEEEEecCCCCCCceEEEEecccCC
Q 031749 9 TSSRLAVLTSHLSAVVMASENEAAVAAVPSDSPTIFDKIINKE--IPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDG 86 (153)
Q Consensus 9 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~FC~ii~~e--~~~~iV~e~e~~~a~~d~~P~~pgH~LViPk~H~~ 86 (153)
.-++-|+-|+-++|....++.++-++|++.++.|.+-+.++-| .+.+||.|+++|+++.|+....|+.+|+|||+|
T Consensus 168 ~HpHgQ~wal~~lP~~vs~e~~s~kkyfe~hgk~ll~dy~~~E~l~Kervv~enehfivvvPywA~wPfEtllipk~h-- 245 (354)
T KOG2958|consen 168 PHPHGQAWALPVLPSTVSQELDSQKKYFEEHGKCLLMDYVKQEALEKERVVVENEHFIVVVPYWATWPFETLLIPKRH-- 245 (354)
T ss_pred CCcccceeecccCCcHHHHHhhhHHHHHHHcCCchHHHHHHHHHhhhceEEeecCceEEEeehhhcCcceeeeechhh--
Confidence 3467788999999999999999999999999999995544332 246999999999999999999999999999999
Q ss_pred CCCcccchhchHHHHHHHHH-HHHHHHHHhCCCCcEEEEeecCCCcc--ce-----eeEEecC
Q 031749 87 LTGLSKAEERHCEILGRLLY-TAKLVAKQEGLEDGFRIVINDGPNGG--HF-----SHPRPPP 141 (153)
Q Consensus 87 v~~l~dL~~~e~~~l~~l~~-~~~~~~~~l~~~~g~ni~~n~g~~ag--q~-----vH~HiiP 141 (153)
+.+|.+|++.+..+|+.+++ +..++.+.+.....|+++++..|.++ |. +|+|..|
T Consensus 246 ~~~~~~l~~~~k~dLasiLK~ll~KydnlfetsfPYsmg~h~aPl~~t~~e~~n~W~h~hFyp 308 (354)
T KOG2958|consen 246 VSRFHELDEVEKVDLASILKLLLIKYDNLFETSFPYSMGIHGAPLGSTEQENYNHWLHMHFYP 308 (354)
T ss_pred hhhhcccchHHHhhHHHHHHHHHHHHHHhhccCCccccccccCCcccccccccchhhhhhccc
Confidence 99999999999999999888 56666666655458999999888654 21 4788766
No 19
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Probab=99.56 E-value=2.6e-14 Score=101.60 Aligned_cols=105 Identities=18% Similarity=0.305 Sum_probs=84.9
Q ss_pred cCCCCCCCeeeecccCcCC--ccEEEECCeEEEEecCCCCCCceEEEEecccCCCCCcccchhchHHHHHHHHHHHHHHH
Q 031749 35 AVPSDSPTIFDKIINKEIP--SKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVA 112 (153)
Q Consensus 35 ~~~~~~~C~FC~ii~~e~~--~~iV~e~e~~~a~~d~~P~~pgH~LViPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~ 112 (153)
....+..|.||+|+..+.+ .-...||+.+++|-|++|.+.-|+||+||+| +.+..+|+..+..++.+++...+.+.
T Consensus 26 ~~~~~~~C~FCDia~r~~~~~ell~~En~~~V~fkDikPaA~~HYLvipK~H--i~~~~~L~k~~V~Lve~m~~~G~~~l 103 (166)
T KOG4359|consen 26 SPEPKSTCVFCDIAGRQDPGTELLHCENEDLVCFKDIKPAATHHYLVVPKKH--IGNCRTLRKDQVELVENMVTVGKTIL 103 (166)
T ss_pred ccCCCCceEEEEeecccCCCCceeEecCCcEEEEecCCccccceEEEechHH--cCChhhcchhhHHHHHHHHHHHHHHH
Confidence 3445678999999875433 3455799999999999999999999999999 99999999989999999999998887
Q ss_pred HHhC--CCCcEEEEeecCCCc-cceeeEEecC
Q 031749 113 KQEG--LEDGFRIVINDGPNG-GHFSHPRPPP 141 (153)
Q Consensus 113 ~~l~--~~~g~ni~~n~g~~a-gq~vH~HiiP 141 (153)
+.-. .++...++++..|+- ..|+|+|+|-
T Consensus 104 ~r~~~td~~~~r~GFHLPPf~SV~HLHlH~I~ 135 (166)
T KOG4359|consen 104 ERNNFTDFTNVRMGFHLPPFCSVSHLHLHVIA 135 (166)
T ss_pred HHhccCCchheeEeccCCCcceeeeeeEeeec
Confidence 6643 356677888877753 3568999763
No 20
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=99.20 E-value=4.2e-10 Score=79.59 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=76.3
Q ss_pred CCCCCeeeecccCcCCccEEEECCeEEEEecCCCCCCceEEEEecccCCCCCcccchhchHHHHHHHHHHHHHHHHHhCC
Q 031749 38 SDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL 117 (153)
Q Consensus 38 ~~~~C~FC~ii~~e~~~~iV~e~e~~~a~~d~~P~~pgH~LViPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l~~ 117 (153)
...+|.||--...-....||.-++.+++.++..|..+||++|||-.| .+++.+++++.++++..+.+.+.++.++.+.
T Consensus 9 ~~~~C~fCl~n~~~~khliisiG~~~YLalpkg~L~~gH~lIvPi~H--~~s~~~~de~~~~Ei~~f~~~L~~mf~~~~~ 86 (121)
T PF04677_consen 9 APDNCWFCLSNPNVEKHLIISIGDEVYLALPKGPLVPGHCLIVPIQH--VPSLTELDEEVWEEIRNFQKSLRKMFASQGK 86 (121)
T ss_pred CCCCCCCccCCCCccceEEEEEcCcEEEEeCCCCccCCEEEEEecce--ecccccCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46789999754433346888999999999999999999999999999 9999999988888888777777777666543
Q ss_pred CCcEEEEeecCCCccceeeEEecCCC
Q 031749 118 EDGFRIVINDGPNGGHFSHPRPPPRR 143 (153)
Q Consensus 118 ~~g~ni~~n~g~~agq~vH~HiiPR~ 143 (153)
+. +.+-.....+.|.|+++||-.
T Consensus 87 --~v-vf~E~~~~~~~H~~iq~vPvp 109 (121)
T PF04677_consen 87 --DV-VFFERVRKRNPHTHIQCVPVP 109 (121)
T ss_pred --CE-EEEEEeCCCCcEEEEEEEEcC
Confidence 22 222111345577888888744
No 21
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=4.4e-07 Score=76.13 Aligned_cols=103 Identities=13% Similarity=0.111 Sum_probs=75.2
Q ss_pred CCCCCCeeeecccCcCCccEEEECCeEEEEecCCCCCCceEEEEecccCCCCCcccchhchHHHHHHHHHHHHHHHHHhC
Q 031749 37 PSDSPTIFDKIINKEIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEG 116 (153)
Q Consensus 37 ~~~~~C~FC~ii~~e~~~~iV~e~e~~~a~~d~~P~~pgH~LViPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l~ 116 (153)
...+.|+||--..+-..--||--.++|++-++..|.+.||+||||-.| ++++..|+++..+++...-..++++.++.+
T Consensus 316 ~~pg~CwFCLSnP~vEkHLIVsIG~~~YlAlaKGpLs~~HvlIipi~H--~p~~~~ls~ev~~Ei~kykaal~~myk~~g 393 (528)
T KOG2476|consen 316 IPPGSCWFCLSNPNVEKHLIVSIGNHFYLALAKGPLSSDHVLIIPIEH--IPSLVPLSAEVTQEINKYKAALRKMYKKQG 393 (528)
T ss_pred CCCCceEEEecCCChhhheEEEecceeEEeecCCCCCCCeEEEEEccc--ccccccCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 456789999865544456888999999999999999999999999999 999999997766777766667777777765
Q ss_pred CCCcEEEEeecCCCccceeeEEecCCCC
Q 031749 117 LEDGFRIVINDGPNGGHFSHPRPPPRRT 144 (153)
Q Consensus 117 ~~~g~ni~~n~g~~agq~vH~HiiPR~~ 144 (153)
.. . +++--....++|+|+-+||--.
T Consensus 394 ~~-~--vvfE~~~~rs~Hlq~Qvipvpk 418 (528)
T KOG2476|consen 394 KD-A--VVFERQSYRSVHLQLQVIPVPK 418 (528)
T ss_pred Ce-E--EEEEeecccceeeEEEEEeccc
Confidence 42 1 2211111234556666777543
No 22
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=98.27 E-value=1.5e-06 Score=63.88 Aligned_cols=87 Identities=23% Similarity=0.279 Sum_probs=65.0
Q ss_pred CccEEEEC-CeEEEEecCCCCCCceEEEEecccCCCCCcccchhchHHHHHHHHHHHHHHHHHhCC---CCcEEEEeecC
Q 031749 53 PSKVVYED-DKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL---EDGFRIVINDG 128 (153)
Q Consensus 53 ~~~iV~e~-e~~~a~~d~~P~~pgH~LViPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l~~---~~g~ni~~n~g 128 (153)
+.+++.|. |.++++-|.+|.+..|+||.||+-. +.+++..-.+....+.++-.+...+...++. ..-|+++++.+
T Consensus 14 ~e~V~~es~d~vvvIrD~fPKa~~H~LvLpr~s~-i~~l~~~~qe~l~ll~~~h~~~~~~v~~~~~~~~~~~f~vG~Hav 92 (184)
T KOG0562|consen 14 PENVYIESPDDVVVIRDKFPKARMHLLVLPRRSS-IDSLFSVVQEHLSLLKEDHAVGPCWVDQLTNEALCNYFRVGFHAV 92 (184)
T ss_pred cceeeccCcccEEEEcccCccceeEEEEecccch-hHHHHHHHHHHhhHhHHHhhcCchHHHHhcchhhhhheeeeeccC
Confidence 34555566 7999999999999999999997642 7777777766667776666666666666643 24688999988
Q ss_pred CCccceeeEEecC
Q 031749 129 PNGGHFSHPRPPP 141 (153)
Q Consensus 129 ~~agq~vH~HiiP 141 (153)
|.. +.+|+|||-
T Consensus 93 PSM-~~LHLHVIS 104 (184)
T KOG0562|consen 93 PSM-NNLHLHVIS 104 (184)
T ss_pred cch-hheeEEEee
Confidence 843 568999984
No 23
>KOG2477 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.0014 Score=56.02 Aligned_cols=77 Identities=10% Similarity=-0.071 Sum_probs=57.2
Q ss_pred CCCCCeeeecccCcCCccEEEECCeEEEEec-CCCCCCceEEEEecccCCCCCcccchhchHHHHHHHHHHHHHHHHHhC
Q 031749 38 SDSPTIFDKIINKEIPSKVVYEDDKVLAFRD-IDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEG 116 (153)
Q Consensus 38 ~~~~C~FC~ii~~e~~~~iV~e~e~~~a~~d-~~P~~pgH~LViPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l~ 116 (153)
.-.+|+||--........||--....++.+| ..+...||++|+|-.| ..+-..|++..++++..+.+.+..+....+
T Consensus 405 ~lD~C~rCfds~klpkhlviSlg~~tYLsLp~~~gL~~gHciIvptqH--~~~t~slDEdvWDEIrnfrKcL~~Mfas~n 482 (628)
T KOG2477|consen 405 VLDTCPRCFDSEKLPKHLVISLGHRTYLSLPTQPGLAKGHCIIVPTQH--RINTLSLDEDVWDEIRNFRKCLALMFASMN 482 (628)
T ss_pred HhhhchhhhcccccccceeEEeccceeEeccccCccccCceEEecccc--cccccccchHHHHHHHHHHHHHHHHHHhcC
Confidence 3578999976555455677777777777776 4668899999999999 777777887777777777776666655544
No 24
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=96.81 E-value=0.0062 Score=51.09 Aligned_cols=70 Identities=19% Similarity=0.225 Sum_probs=46.1
Q ss_pred ECCeEEEEecCCCCCCceEEEEecc--cCCCCCcccchhchHHHHHHHHHHHHHHHHHhCCCCcEEEEeec-CCC-ccce
Q 031749 59 EDDKVLAFRDIDPQAPTHILIIPKV--KDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVIND-GPN-GGHF 134 (153)
Q Consensus 59 e~e~~~a~~d~~P~~pgH~LViPk~--H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l~~~~g~ni~~n~-g~~-agq~ 134 (153)
++....++.+..|..+||+|+||.. | .+-. ++. +++..+-.++.....+ +|.++.|. |.. +-.|
T Consensus 167 ~~s~~~VlINvsPI~~gH~LlvP~~~~~--lPQ~--i~~-------~~l~la~~~a~~~~~p-~frvgYNSlGA~ASvNH 234 (403)
T PLN03103 167 SNSPNVVAINVSPIEYGHVLLVPRVLDC--LPQR--IDP-------DSFLLALYMAAEANNP-YFRVGYNSLGAFATINH 234 (403)
T ss_pred CCCccEEEEeCCCCccCeEEEcCCcccC--CCeE--ecH-------HHHHHHHHHHHhcCCC-cEEEEecCCccccCcce
Confidence 3555688899999999999999876 4 3322 221 3444555566655555 78888885 332 3456
Q ss_pred eeEEec
Q 031749 135 SHPRPP 140 (153)
Q Consensus 135 vH~Hii 140 (153)
+|+|..
T Consensus 235 LHFQa~ 240 (403)
T PLN03103 235 LHFQAY 240 (403)
T ss_pred eeeeec
Confidence 788853
No 25
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=96.68 E-value=0.014 Score=46.09 Aligned_cols=98 Identities=14% Similarity=0.192 Sum_probs=63.4
Q ss_pred CCCeeeecccCc-CCccEEEECCeEEEEecCCCCCCceEEEEeccc-CCCCCcccchhchHHHHHHHHHHHHHHHHHhCC
Q 031749 40 SPTIFDKIINKE-IPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVK-DGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL 117 (153)
Q Consensus 40 ~~C~FC~ii~~e-~~~~iV~e~e~~~a~~d~~P~~pgH~LViPk~H-~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l~~ 117 (153)
..|+.-....+. .|+..|.....++++.| +.-|.|+|+||... -++++..-+++..+..+......-.-+.++++.
T Consensus 40 ~qCvp~~~~~~~p~PC~~Vd~~~gyvvlKD--~~Gp~qyLLiPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~ 117 (252)
T PRK05471 40 EQCLPNQQQNQNPAPCAEVDPQAGYVLLKD--RNGPLQYLLMPTYRISGIESPLLLEPSTPNYFALAWQARDFMSKKYGK 117 (252)
T ss_pred hhcCCchhccCCCCCCeeEccCCCeEEEec--CCCCcceEEeecccccCccCccccCCCCccHHHHHHHHhHHHHHhhCC
Confidence 457777654443 35777777888888875 55899999999997 224444445555567776666655556666764
Q ss_pred --C-CcEEEEeecCCCccce-eeEEe
Q 031749 118 --E-DGFRIVINDGPNGGHF-SHPRP 139 (153)
Q Consensus 118 --~-~g~ni~~n~g~~agq~-vH~Hi 139 (153)
+ +...+.+|.--.-.|. +||||
T Consensus 118 pipd~~lsLaINS~~gRSQnQLHIHI 143 (252)
T PRK05471 118 PIPDSAVSLAINSRYGRTQDQLHIHI 143 (252)
T ss_pred CCChhheEEEecCCCCccccceeeeh
Confidence 3 3566777753222233 89997
No 26
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=96.67 E-value=0.012 Score=46.31 Aligned_cols=98 Identities=13% Similarity=0.208 Sum_probs=64.5
Q ss_pred CCCeeeecccCc-CCccEEEECCeEEEEecCCCCCCceEEEEeccc-CCCCCcccchhchHHHHHHHHHHHHHHHHHhCC
Q 031749 40 SPTIFDKIINKE-IPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVK-DGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL 117 (153)
Q Consensus 40 ~~C~FC~ii~~e-~~~~iV~e~e~~~a~~d~~P~~pgH~LViPk~H-~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l~~ 117 (153)
..|+.-.-..|. .|+..|.....++++-|. ..|.|+|++|-.. -++++..-+++..+..++.....-.-+.++++.
T Consensus 39 ~qCvp~~~~~~~p~PC~~Vd~~~gyvvlKD~--~Gp~qyLLmPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~ 116 (250)
T TIGR00672 39 EECLPNQQQNQNPSPCAEVKPNAGYVVLKDL--NGPLQYLLMPTYRINGTESPLLLDPSTPNFFWLAWQARDFMSKKYGQ 116 (250)
T ss_pred hhcCCchhccCCCCCcceEcCCCCeEEEeCC--CCCceeEEeeccccCCccChhhcCCCCccHHHHHHHHhHHHHHhcCC
Confidence 557777655443 356777778888888887 6899999999997 224444445566667777655555556666664
Q ss_pred --C-CcEEEEeecCCCccce-eeEEe
Q 031749 118 --E-DGFRIVINDGPNGGHF-SHPRP 139 (153)
Q Consensus 118 --~-~g~ni~~n~g~~agq~-vH~Hi 139 (153)
+ +...+.+|.--.-.|. +||||
T Consensus 117 pipd~~lsLaINS~~gRSQnQLHIHI 142 (250)
T TIGR00672 117 PIPDRAVSLAINSRTGRSQNHFHIHI 142 (250)
T ss_pred CCChhheeEEecCCCCcccccceeeH
Confidence 3 3566777753222233 89997
No 27
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=96.20 E-value=0.029 Score=43.60 Aligned_cols=85 Identities=18% Similarity=0.262 Sum_probs=47.8
Q ss_pred CccEEEECCeEEEEecCCCCCCceEEEEeccc-CCCCCcccchhchHHHHHHHHHHHHHHHHHhCCC---CcEEEEeecC
Q 031749 53 PSKVVYEDDKVLAFRDIDPQAPTHILIIPKVK-DGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLE---DGFRIVINDG 128 (153)
Q Consensus 53 ~~~iV~e~e~~~a~~d~~P~~pgH~LViPk~H-~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l~~~---~g~ni~~n~g 128 (153)
|+..|-....++++-| +..|.|+|+||-.- -++++..-+++..+..++.....-..+.++++.+ +.+.+.+|.-
T Consensus 25 pC~~Vd~~~gyvvlKd--~~G~~qyLL~Pt~rIsGIEsP~Ll~~~~pNyf~~AW~aR~~v~~~~g~~lpd~~lsLaINS~ 102 (222)
T PF02611_consen 25 PCAQVDLQQGYVVLKD--RNGPLQYLLMPTDRISGIESPALLEPRTPNYFADAWQARGFVSQKLGKPLPDDDLSLAINSQ 102 (222)
T ss_dssp TSSEEETTTTEEEEE---SSSSS-EEEEESS---STT-GGGGSTTS--HHHHHHHTTHHHHHHHTS---GGGEEEEEB-G
T ss_pred CCeEEcCCCCEEEEeC--CCCCccEEEeeccccCCccChhhcCCCCccHHHHHHHhhHHHHHhcCCCCCccceEEEecCc
Confidence 4455556777777776 55789999999987 2355555556666778877665555566666643 5778888863
Q ss_pred CCccce-eeEEe
Q 031749 129 PNGGHF-SHPRP 139 (153)
Q Consensus 129 ~~agq~-vH~Hi 139 (153)
..-.|. +||||
T Consensus 103 ~gRsQdQLHIHi 114 (222)
T PF02611_consen 103 YGRSQDQLHIHI 114 (222)
T ss_dssp GG-S--S--EEE
T ss_pred cCccccceEeEh
Confidence 322343 89997
No 28
>KOG3969 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.12 Score=41.31 Aligned_cols=91 Identities=19% Similarity=0.291 Sum_probs=61.5
Q ss_pred CCccEEEECC----eEEEEecC--CC--CCCceEEEEecccCCCCCcccchhchHHHHHHHHHHHHHHHHHh-C-CCCcE
Q 031749 52 IPSKVVYEDD----KVLAFRDI--DP--QAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQE-G-LEDGF 121 (153)
Q Consensus 52 ~~~~iV~e~e----~~~a~~d~--~P--~~pgH~LViPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l-~-~~~g~ 121 (153)
...+||||+. .|+.+-|. ++ .-.-|+|.|-+++. +.++-||+..+...|..+-..++.+.... + .++-.
T Consensus 158 E~driV~ed~d~~nGFillPDlKWdgqtld~LyllaIvhr~d-ikSiRDL~~~h~~lL~n~r~k~~~~i~~~y~v~~dql 236 (310)
T KOG3969|consen 158 EDDRIVYEDPDPENGFILLPDLKWDGQTLDSLYLLAIVHRRD-IKSIRDLRPSHLQLLRNIRNKSREAIPQRYGVDPDQL 236 (310)
T ss_pred cccceEEecCCCcCCeEEccccccCcccccceeEEEEEecCC-cchhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCchhE
Confidence 3468998753 45666553 22 34567888888874 99999999888888888777666655443 3 25677
Q ss_pred EEEeecCCCccceeeEEecC-CCC
Q 031749 122 RIVINDGPNGGHFSHPRPPP-RRT 144 (153)
Q Consensus 122 ni~~n~g~~agq~vH~HiiP-R~~ 144 (153)
.+.++--|. --|+|+||++ ++.
T Consensus 237 rmf~HYqPS-yYHlHVHi~nik~~ 259 (310)
T KOG3969|consen 237 RMFFHYQPS-YYHLHVHIVNIKHD 259 (310)
T ss_pred EEEEEecCc-eEEEEEEEEeccCC
Confidence 777765442 2357899998 444
No 29
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=95.48 E-value=0.068 Score=43.75 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=36.4
Q ss_pred eEEEEecccCCCCCcccchhchHHHHHHHHHHHHHHHHHhC---CCCcEEEEeecCCCcccee-eEE
Q 031749 76 HILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEG---LEDGFRIVINDGPNGGHFS-HPR 138 (153)
Q Consensus 76 H~LViPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l~---~~~g~ni~~n~g~~agq~v-H~H 138 (153)
.++|...+| ..++.+++. +.+..++.+-+.-..++. ...-..+..|.|+.+|.++ |-|
T Consensus 95 eVii~sp~H--~~~l~~~~~---~~i~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH 156 (329)
T cd00608 95 EVICFSPDH--NLTLAEMSV---AEIREVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPH 156 (329)
T ss_pred EEEEECCcc--cCChhhCCH---HHHHHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCC
Confidence 567778888 788888875 445555554444444443 2223456678899998774 444
No 30
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=93.99 E-value=0.53 Score=36.33 Aligned_cols=98 Identities=14% Similarity=0.164 Sum_probs=56.7
Q ss_pred CCCeeeecccC-cCCccEEEECCeEEEEecCCCCCCceEEEEeccc-CCCCCcccchhchHHHHHHHHHHHHHHHHHhCC
Q 031749 40 SPTIFDKIINK-EIPSKVVYEDDKVLAFRDIDPQAPTHILIIPKVK-DGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL 117 (153)
Q Consensus 40 ~~C~FC~ii~~-e~~~~iV~e~e~~~a~~d~~P~~pgH~LViPk~H-~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l~~ 117 (153)
..|.+-..-.+ -.|+..|-+...++++-|.+ -|..+|++|-.+ -++++..-++...+..+......---+.++++.
T Consensus 40 e~C~p~~~~~~~paPCaeV~~~AG~av~Kd~~--gPlQyLLmPt~rItGiEsP~L~e~atpNyf~~AWqAR~fms~kyg~ 117 (252)
T COG2134 40 ERCLPNYQQNQNPAPCAEVKPQAGYAVLKDRN--GPLQYLLMPTARITGIESPLLLEPATPNYFYLAWQARDFMSKKYGN 117 (252)
T ss_pred HHcCcchhccCCCCCceeecCCCceEEEeccC--CCceeEeeeeecccCCcChhhcCCCCccHHHHHHHHHHHHHHHhCC
Confidence 34555544332 23566677777888887766 567789999998 123343334444556665544444444556653
Q ss_pred --C-CcEEEEeecCCCccc-eeeEEe
Q 031749 118 --E-DGFRIVINDGPNGGH-FSHPRP 139 (153)
Q Consensus 118 --~-~g~ni~~n~g~~agq-~vH~Hi 139 (153)
+ ....+.+|.-..-.| ++|+||
T Consensus 118 ~ipd~dvsLaINs~~gRtQdqlHIHI 143 (252)
T COG2134 118 PIPDSDVSLAINSKNGRTQDQLHIHI 143 (252)
T ss_pred CCCccceEEEecCccCccccceEEEE
Confidence 3 256666764322223 389997
No 31
>PLN02643 ADP-glucose phosphorylase
Probab=93.80 E-value=0.45 Score=39.20 Aligned_cols=58 Identities=21% Similarity=0.200 Sum_probs=35.5
Q ss_pred eEEEEecccCCCCCcccchhchHHHHHHHHHHHHHHHHHhCC---CCcEEEEeecCCCcccee-eEE
Q 031749 76 HILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL---EDGFRIVINDGPNGGHFS-HPR 138 (153)
Q Consensus 76 H~LViPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l~~---~~g~ni~~n~g~~agq~v-H~H 138 (153)
.++|..-+| ..++.+++. +.+..++.+-+.-.+.+.. ..-..+.-|-|+.+|.++ |-|
T Consensus 109 eVii~sp~H--~~~l~~~~~---~~i~~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH 170 (336)
T PLN02643 109 DVVIETPVH--SVQLSDLPA---RHIGEVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSH 170 (336)
T ss_pred EEEEeCCcc--CCChHHCCH---HHHHHHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCc
Confidence 456666778 788998885 4455555544444444432 223456678899988774 544
No 32
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=93.51 E-value=0.11 Score=42.98 Aligned_cols=25 Identities=32% Similarity=0.572 Sum_probs=19.5
Q ss_pred ECCeEEEEecCCCCCCceEEEEeccc
Q 031749 59 EDDKVLAFRDIDPQAPTHILIIPKVK 84 (153)
Q Consensus 59 e~e~~~a~~d~~P~~pgH~LViPk~H 84 (153)
|+.. ++..+..|...||+||||+--
T Consensus 165 e~~~-vvaIN~sPie~~H~LiiP~V~ 189 (431)
T KOG2720|consen 165 ENSP-VVAINVSPIEYGHVLIIPRVL 189 (431)
T ss_pred ccCc-eEEEecCccccCcEEEecchh
Confidence 3344 666778899999999999853
No 33
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=92.50 E-value=0.71 Score=38.22 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=35.8
Q ss_pred eEEEEecccCCCCCcccchhchHHHHHHHHHHHHHHHHHhCC-CCcEEEEeecCCCcccee-eEE
Q 031749 76 HILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGL-EDGFRIVINDGPNGGHFS-HPR 138 (153)
Q Consensus 76 H~LViPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l~~-~~g~ni~~n~g~~agq~v-H~H 138 (153)
.++|...+| ..+|.+++.+ .+..++.+-+.-.+.+.. ..-..+.-|-|+.+|.++ |-|
T Consensus 107 eViv~sp~H--~~~l~~~~~~---~i~~v~~~~~~r~~~l~~~i~yv~iF~N~G~~~GaSl~HPH 166 (346)
T PRK11720 107 RVICFSPDH--SKTLPELSVA---ALREVVDTWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPH 166 (346)
T ss_pred EEEEECCCc--CCChhHCCHH---HHHHHHHHHHHHHHHHHhCCcEEEEEeecCcccCcCCCCCc
Confidence 467777788 7889999864 444555544443344322 333456678899988774 544
No 34
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=92.47 E-value=0.6 Score=38.55 Aligned_cols=96 Identities=16% Similarity=0.044 Sum_probs=57.6
Q ss_pred CCCCCeeeeccc------CcCCccEEEECCeEEEEecCCC------------CCCceEEEE--ecccCCCCCcccchhch
Q 031749 38 SDSPTIFDKIIN------KEIPSKVVYEDDKVLAFRDIDP------------QAPTHILII--PKVKDGLTGLSKAEERH 97 (153)
Q Consensus 38 ~~~~C~FC~ii~------~e~~~~iV~e~e~~~a~~d~~P------------~~pgH~LVi--Pk~H~~v~~l~dL~~~e 97 (153)
.+..|+||.-.. ..-....+++|++-++-.|.-. ...|+..|| ...| -.++.+++.
T Consensus 38 ~~~~CpfC~gn~~~t~~~~~~~~~~~~~N~fp~v~~d~p~~~~~~~~~~~~~~~~g~~~VIvesp~H--~~~l~~~~~-- 113 (338)
T COG1085 38 HDPTCPFCPGNERTTEENPRYWHVRVFPNDFPAVSEDPPDAPGSEDPLFKIQEARGKSRVIVESPDH--SKTLPELPV-- 113 (338)
T ss_pred cCCcCCccCCcceecccCCCCcceeecCCcchhhcCCCCCCCccccchhcccccCcceEEEEECCcc--cCccccCCH--
Confidence 567899997531 1112355666665554433222 234444444 4557 677888875
Q ss_pred HHHHHHHHHHHHHHHHHhCC---CCcEEEEeecCCCcccee-eEE
Q 031749 98 CEILGRLLYTAKLVAKQEGL---EDGFRIVINDGPNGGHFS-HPR 138 (153)
Q Consensus 98 ~~~l~~l~~~~~~~~~~l~~---~~g~ni~~n~g~~agq~v-H~H 138 (153)
+.+.+++.+.+...+.++. ..-..+..|.|+.+|-+. |-|
T Consensus 114 -~~~~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH 157 (338)
T COG1085 114 -EEIEEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPH 157 (338)
T ss_pred -HHHHHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCC
Confidence 5566677776666666642 234557788899888764 666
No 35
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=91.68 E-value=1.4 Score=36.50 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=34.5
Q ss_pred eEEEEecccCCCCCcccchhchHHHHHHHHHHHHHHHHHhC-CCCcEEEEeecCCCcccee-eEE
Q 031749 76 HILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEG-LEDGFRIVINDGPNGGHFS-HPR 138 (153)
Q Consensus 76 H~LViPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l~-~~~g~ni~~n~g~~agq~v-H~H 138 (153)
.++|-.-+| -.++.+++.++ +..++.+-+.-.+.+. ...-..+.-|-|..+|.++ |-|
T Consensus 107 eVii~sp~H--~~~l~~m~~~~---i~~v~~~~~~r~~~l~~~i~yv~iF~N~G~~~GaSl~HPH 166 (347)
T TIGR00209 107 RVICFSPDH--SKTLPELSVAA---LTEIVKTWQEQTAELGKTYPWVQIFENKGAAMGCSNPHPH 166 (347)
T ss_pred EEEEeCCCc--cCChhHCCHHH---HHHHHHHHHHHHHHHHhCCcEEEEEeecCcccCcCCCCCc
Confidence 456667778 78899998644 4444444333333332 2223445677899888774 544
No 36
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=89.01 E-value=0.62 Score=36.78 Aligned_cols=70 Identities=21% Similarity=0.264 Sum_probs=42.1
Q ss_pred CCeEEEEecCCCCCCceEEEEecccCCCCCcccchhchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecCCCccce---ee
Q 031749 60 DDKVLAFRDIDPQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGHF---SH 136 (153)
Q Consensus 60 ~e~~~a~~d~~P~~pgH~LViPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l~~~~g~ni~~n~g~~agq~---vH 136 (153)
++....+++.+|+.+.|+|||.+.-+.-.+. |+ +++++.+ .+++..+ +|. +..|.||.+|.+ -|
T Consensus 91 s~th~~llNKF~VVdeHlLiVTrefedQ~s~--LT------l~Df~ta-~~vL~~l---dgl-vFYNsGp~aGaSq~HkH 157 (298)
T COG4360 91 SDTHKLLLNKFPVVDEHLLIVTREFEDQESA--LT------LADFTTA-YAVLCGL---DGL-VFYNSGPIAGASQDHKH 157 (298)
T ss_pred chhHhhhhhcCCcccceeEEeehhhhhcccc--CC------HHHHHHH-HHHHhcc---cce-EEecCCCCcCcCCCccc
Confidence 3455677899999999999999873112222 33 2233322 2233333 342 567889988854 36
Q ss_pred EEecCC
Q 031749 137 PRPPPR 142 (153)
Q Consensus 137 ~HiiPR 142 (153)
+-++|.
T Consensus 158 LQi~pm 163 (298)
T COG4360 158 LQIVPM 163 (298)
T ss_pred eeEeec
Confidence 667764
No 37
>PF14317 YcxB: YcxB-like protein
Probab=73.99 E-value=7.6 Score=22.70 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=18.6
Q ss_pred cEEEECCeEEEEecCCCCCCceEEEEeccc
Q 031749 55 KVVYEDDKVLAFRDIDPQAPTHILIIPKVK 84 (153)
Q Consensus 55 ~iV~e~e~~~a~~d~~P~~pgH~LViPk~H 84 (153)
.-|.|++.++.+.- .++..++|||+-
T Consensus 23 ~~v~e~~~~~~l~~----~~~~~~~iPk~~ 48 (62)
T PF14317_consen 23 KKVVETKDYFYLYL----GKNQAFIIPKRA 48 (62)
T ss_pred EEEEEeCCEEEEEE----CCCeEEEEEHHH
Confidence 44677777776633 456889999986
No 38
>COG5075 Uncharacterized conserved protein [Function unknown]
Probab=55.04 E-value=23 Score=28.23 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=30.2
Q ss_pred cCCccEEEECCeE----EEEecC--CC--CCCceEEEEecccCCCCCcccchhchHHHH
Q 031749 51 EIPSKVVYEDDKV----LAFRDI--DP--QAPTHILIIPKVKDGLTGLSKAEERHCEIL 101 (153)
Q Consensus 51 e~~~~iV~e~e~~----~a~~d~--~P--~~pgH~LViPk~H~~v~~l~dL~~~e~~~l 101 (153)
....+||||++.. +++-|. ++ .-.-|+++|-++.. +.++-||...+...+
T Consensus 152 ae~erivyed~~~~ngfiiiPD~KWd~qt~dsL~l~aIv~~~d-iktiRDlr~~~i~~l 209 (305)
T COG5075 152 AENERIVYEDESVINGFIIIPDMKWDGQTVDSLYLVAIVYRTD-IKTIRDLRYYHILWL 209 (305)
T ss_pred cccceeEecCcccccCceeccccccCccceeeeeEEEEEecCC-chhhhhCchhhhhHH
Confidence 3456999998765 334442 33 33456677766642 788888876544433
No 39
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=52.37 E-value=25 Score=26.24 Aligned_cols=55 Identities=13% Similarity=0.079 Sum_probs=26.9
Q ss_pred eEEEEecccCCCCCcccchhchHHHHHHHHHHHHHHHHHh---CCCCcEEEEeecCCCcccee
Q 031749 76 HILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQE---GLEDGFRIVINDGPNGGHFS 135 (153)
Q Consensus 76 H~LViPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l---~~~~g~ni~~n~g~~agq~v 135 (153)
.++|---+| -.+|.+|+.++ +..++.+.+.-...+ ..+.-..+.-|.|..+|.++
T Consensus 112 EViIe~p~h--~~~~~~~~~~~---~~~i~~a~~~r~~~l~~~~~~~yv~~FeN~G~~~GaSl 169 (183)
T PF01087_consen 112 EVIIESPKH--ERTLADMSVKE---IKEILKAWRDRYRELSSDKYIKYVLIFENEGYEAGASL 169 (183)
T ss_dssp EEEES-SST--T--GGGS-HHH---HHHHHHHHHHHHHHHCT-TT-SEEEEEEEESGGGT-SS
T ss_pred EEEEeCCCC--CCChhhCCHHH---HHHHHHHHHHHHHHHhccCCcceEEEEEecCCcCCCCC
Confidence 445555567 67899988644 444444433333333 23433345567788888653
No 40
>COG1943 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=49.94 E-value=40 Score=23.99 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=22.4
Q ss_pred CCCCceEEEEecccCCCCCcccchhchHHHHHHHHHHHHHHHHHh
Q 031749 71 PQAPTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQE 115 (153)
Q Consensus 71 P~~pgH~LViPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l 115 (153)
+..+.|++++||.- ..-|. . +.+..+-.+++.+++..
T Consensus 10 ~~~~yH~v~~~kyR--r~vl~---~---~~~~~l~~~l~~~~~~~ 46 (136)
T COG1943 10 YGLKYHFVWVPKYR--RKVLT---G---EVLNLLRSILREVAEQK 46 (136)
T ss_pred eCCcEEEEEeccCc--hHhhh---H---hHHHHHHHHHHHHHHhC
Confidence 45789999999975 44443 1 13334444566666654
No 41
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=48.42 E-value=56 Score=26.79 Aligned_cols=117 Identities=15% Similarity=0.048 Sum_probs=64.1
Q ss_pred cccchhhhhHHHHhhhcC------CCCCCCeeeec---ccCcC----CccEEEECCeEEEEecC--CC-----------C
Q 031749 19 HLSAVVMASENEAAVAAV------PSDSPTIFDKI---INKEI----PSKVVYEDDKVLAFRDI--DP-----------Q 72 (153)
Q Consensus 19 ~~~p~~~~~~~~~~~~~~------~~~~~C~FC~i---i~~e~----~~~iV~e~e~~~a~~d~--~P-----------~ 72 (153)
.+.|.+.++-++..++.. .++..|+||-= ..|.. ...-|++|++-.+-.|. .+ .
T Consensus 25 lvSphRakRPwqg~~e~~~~~~~p~~dp~cplcpG~~ra~g~~np~ydstyvf~NdypA~~~d~p~~~~~~~~~lfk~~~ 104 (354)
T KOG2958|consen 25 LVSPHRAKRPWQGQKEPQNKNTTPSYDPLCPLCPGNIRATGFRNPDYDSTYVFDNDYPALRRDQPTQGQDESTGLFKTIS 104 (354)
T ss_pred EechhhccCCcccccCccCCCCCCcCCCCCCCCCCcchhccccCCCCccceeccCCchhhccCCCCCCCCCCccchhhee
Confidence 456777777776655443 23457999952 12211 23556666654433221 11 2
Q ss_pred CCceEEEEecccCCCCCcccchhchHHHHHHHHHHHHHHHHHhCCCCcEEE---EeecCCCccce-eeEE
Q 031749 73 APTHILIIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRI---VINDGPNGGHF-SHPR 138 (153)
Q Consensus 73 ~pgH~LViPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l~~~~g~ni---~~n~g~~agq~-vH~H 138 (153)
..|-+-||.-.. ..++. |..-+..++.+++..=+++...++..+.|+. .-|-|..+|-+ .|-|
T Consensus 105 v~G~c~Vicf~P--nh~lt-Lp~m~~~~i~~vv~aw~~~~~~l~~h~~y~yvQIFeNkGa~mGcSn~HpH 171 (354)
T KOG2958|consen 105 VKGVCKVICFSP--NHNLT-LPLMDVVEIRDVVDAWKKLYNELGQHDSYKYVQIFENKGAAMGCSNPHPH 171 (354)
T ss_pred ecceeEEEEeCC--ccccc-cccCCHHHHHHHHHHHHHHHHHhcccCCcceeeeeccCCcccccCCCCcc
Confidence 345555665543 33332 3334467777777777777778875555654 44667666644 3443
No 42
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional
Probab=46.56 E-value=1.1e+02 Score=26.68 Aligned_cols=102 Identities=13% Similarity=0.022 Sum_probs=66.5
Q ss_pred hhhhcccccchhhhhHHHHhhhcCCCC-CCCeeeecccCcC-----C----ccEE---EECCeEEEEecCCCCCCceEEE
Q 031749 13 LAVLTSHLSAVVMASENEAAVAAVPSD-SPTIFDKIINKEI-----P----SKVV---YEDDKVLAFRDIDPQAPTHILI 79 (153)
Q Consensus 13 ~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~C~FC~ii~~e~-----~----~~iV---~e~e~~~a~~d~~P~~pgH~LV 79 (153)
|.|--++-=|-+-..+|..|+.....+ ..|..|.-..|-. | -||| ..++.|..=...+..+.-|++|
T Consensus 144 LeITINLSKPEKDPK~IAaak~~~~s~YP~C~LC~ENeGY~Gr~~hPAR~NhRiI~~~L~ge~W~fQYSPY~YynEH~Iv 223 (493)
T PRK05270 144 LEITINLSKPEKDPKAIAAAKKAKASSYPKCLLCMENEGYAGRLNHPARSNHRIIRLTLGGESWGFQYSPYAYFNEHCIV 223 (493)
T ss_pred eEEEEecCCCCCCHHHHHHHhccccCCCCcccccccccCcCCCCCCccccCceEEEEeeCCceeeeecCchheecceeEE
Confidence 566556666777888887777764322 5699998766532 2 2555 4567776656677788999999
Q ss_pred EecccCCCCCcccchhchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecC
Q 031749 80 IPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDG 128 (153)
Q Consensus 80 iPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l~~~~g~ni~~n~g 128 (153)
+-.+| .+= .++ .+.+..|+..+.+. | .|-++.|..
T Consensus 224 l~~~H--~PM--kI~---~~tF~rLL~fv~~f------P-hYFiGSNAD 258 (493)
T PRK05270 224 LSEKH--RPM--KIS---RKTFERLLDFVEQF------P-HYFIGSNAD 258 (493)
T ss_pred ecCcc--Ccc--Eec---HHHHHHHHHHHHhC------C-ccccccCCC
Confidence 99999 542 233 35566655544332 4 677777653
No 43
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=42.05 E-value=1.3e+02 Score=26.34 Aligned_cols=102 Identities=15% Similarity=-0.001 Sum_probs=65.3
Q ss_pred hhhhcccccchhhhhHHHHhhhcCCC-CCCCeeeecccCcC-----C----ccEE---EECCeEEEEecCCCCCCceEEE
Q 031749 13 LAVLTSHLSAVVMASENEAAVAAVPS-DSPTIFDKIINKEI-----P----SKVV---YEDDKVLAFRDIDPQAPTHILI 79 (153)
Q Consensus 13 ~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~C~FC~ii~~e~-----~----~~iV---~e~e~~~a~~d~~P~~pgH~LV 79 (153)
|.|--++-=|-+-..+|..|+..... =..|..|.-..|-. | -||| ..++.|..=...+..+.-|++|
T Consensus 141 leITINLSKPEKDPK~IAaAk~~~~s~YPkC~LC~ENeGY~Gr~nhPAR~NhRiI~~~L~ge~W~fQYSPY~YynEHcIv 220 (489)
T TIGR01239 141 LEITINLSKPEKDPKAIAAAKEAKQSSYPACQLCMENEGFEGSVNHPARSNHRIIRVILEDEQWGFQFSPYAYFPEHSIV 220 (489)
T ss_pred eEEEEecCCCCCCHHHHHHHhhCccCCCCccchhccccCcCCCCCCCcccCceEEEEeeCCccceeeccchheecceeEE
Confidence 55555666677778888777655332 24799998766532 2 2555 4567776656677788999999
Q ss_pred EecccCCCCCcccchhchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecC
Q 031749 80 IPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDG 128 (153)
Q Consensus 80 iPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l~~~~g~ni~~n~g 128 (153)
+-.+| .+=- ++ ...+..|+..+.+. | .|-++.|..
T Consensus 221 l~~~H--~PMk--I~---~~tF~~Ll~fv~~f------P-hYFiGSNAD 255 (489)
T TIGR01239 221 LKGKH--EPME--IS---KKTFERLLSFLGKF------P-HYFIGSNAD 255 (489)
T ss_pred ecCcc--CCcE--ec---HHHHHHHHHHHHhC------C-ccccccCCC
Confidence 99999 5522 33 35565555544332 4 677777653
No 44
>smart00538 POP4 A domain found in a protein subunit of human RNase MRP and RNase P ribonucleoprotein complexes and archaeal proteins.
Probab=40.03 E-value=53 Score=21.85 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=23.5
Q ss_pred CccEEEECCeEEEEecCCCCCCceEEEEeccc
Q 031749 53 PSKVVYEDDKVLAFRDIDPQAPTHILIIPKVK 84 (153)
Q Consensus 53 ~~~iV~e~e~~~a~~d~~P~~pgH~LViPk~H 84 (153)
.+.+|.|+.+.+.+.... +-..+|||.+
T Consensus 30 ~GiVv~ET~nt~~I~t~~----~~~~~IpK~~ 57 (92)
T smart00538 30 EGIVVDETRNTLKIETKE----GRVKTVPKDG 57 (92)
T ss_pred EEEEEEeeeeEEEEEeCC----CcEEEEECCC
Confidence 358899999999998654 5789999998
No 45
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=37.76 E-value=78 Score=20.19 Aligned_cols=28 Identities=18% Similarity=0.408 Sum_probs=23.2
Q ss_pred eEEEEecCCCCCCceEEEEecccCCCCCcc
Q 031749 62 KVLAFRDIDPQAPTHILIIPKVKDGLTGLS 91 (153)
Q Consensus 62 ~~~a~~d~~P~~pgH~LViPk~H~~v~~l~ 91 (153)
.+.++-+-.+..+|..++|+++. +.++.
T Consensus 2 ~I~~~rNGD~~~~g~~~~i~~~~--~~sfd 29 (80)
T cd01617 2 RVVVYRNGDPFFKGVRLLVNRRR--FKSFD 29 (80)
T ss_pred EEEEEECCCCCCCCEEEEEChhh--hCCHH
Confidence 35677888999999999999988 77764
No 46
>PF04270 Strep_his_triad: Streptococcal histidine triad protein ; InterPro: IPR006270 This entry represents a repeated sequence region that includes a His-X-X-His-X-His (histidine triad) motif, which is found in family of Streptococcal proteins. Members of the family are suggested to cleave human complement component 3, and family member PhpA has been shown in vaccine studies to be a protective antigen in mice []. ; PDB: 2CS7_C.
Probab=36.93 E-value=95 Score=18.61 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=18.3
Q ss_pred CccEEEECCeEEEEecCCCCCCceEEEEeccc
Q 031749 53 PSKVVYEDDKVLAFRDIDPQAPTHILIIPKVK 84 (153)
Q Consensus 53 ~~~iV~e~e~~~a~~d~~P~~pgH~LViPk~H 84 (153)
|..||-+++.-+++-. -+|.-.|||..
T Consensus 11 p~dI~~~~~~gy~vpH-----gdH~HyI~k~d 37 (53)
T PF04270_consen 11 PADIISETGDGYVVPH-----GDHFHYIPKSD 37 (53)
T ss_dssp GGG--EE-SSEEEEEE-----TTEEEEEEGGG
T ss_pred HHHccccCCCeEEeeC-----CCcccCCchhh
Confidence 5678888877776655 37999999976
No 47
>smart00537 DCX Domain in the Doublecortin (DCX) gene product. Tandemly-repeated domain in doublin, the Doublecortin gene product. Proposed to bind tubulin. Doublecortin (DCX) is mutated in human X-linked neuronal migration defects.
Probab=36.40 E-value=45 Score=21.86 Aligned_cols=29 Identities=10% Similarity=0.219 Sum_probs=23.9
Q ss_pred eEEEEecCCCCCCceEEEEecccCCCCCccc
Q 031749 62 KVLAFRDIDPQAPTHILIIPKVKDGLTGLSK 92 (153)
Q Consensus 62 ~~~a~~d~~P~~pgH~LViPk~H~~v~~l~d 92 (153)
.+.++-+-.+..+|..++|+++. +.++..
T Consensus 7 ~i~~~rNGD~~~~g~~~~v~~~~--~~s~d~ 35 (89)
T smart00537 7 RIRFYRNGDRFFKGVRLVVNRKR--FKSFEA 35 (89)
T ss_pred EEEEEeCCCCCCCCEEEEEChhh--cCCHHH
Confidence 45667788899999999999998 787743
No 48
>PRK03879 ribonuclease P protein component 1; Validated
Probab=35.65 E-value=68 Score=21.56 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=22.5
Q ss_pred CccEEEECCeEEEEecCCCCCCceEEEEeccc
Q 031749 53 PSKVVYEDDKVLAFRDIDPQAPTHILIIPKVK 84 (153)
Q Consensus 53 ~~~iV~e~e~~~a~~d~~P~~pgH~LViPk~H 84 (153)
.+.+|.|+.+.+.+. ..+-...|||.+
T Consensus 32 ~GiVv~ETknt~~I~-----~~~~~~~VPK~~ 58 (96)
T PRK03879 32 KGRVVDETRNTLVIE-----TDGKEWMVPKDG 58 (96)
T ss_pred eEEEEEeceeEEEEE-----cCCcEEEEeCCC
Confidence 358999999999998 345689999998
No 49
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=34.11 E-value=98 Score=23.39 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhCC-CCcEEEEeecCCCccceeeEEe-cCCCCCC
Q 031749 103 RLLYTAKLVAKQEGL-EDGFRIVINDGPNGGHFSHPRP-PPRRTTN 146 (153)
Q Consensus 103 ~l~~~~~~~~~~l~~-~~g~ni~~n~g~~agq~vH~Hi-iPR~~~d 146 (153)
.+...+..+++.++. ...|-++.+.- ..+.|+|| |+|..-+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~v~~~H~D---~~h~H~Hivin~v~~~ 115 (242)
T PF03432_consen 73 QAHEIAREFAEEMGPGNHQYVVVVHTD---TDHPHVHIVINRVDLD 115 (242)
T ss_pred HHHHHHHHHHHHcCCCCcceEEEECCC---cCeeeeeEEEeecccc
Confidence 445577778888764 23455555542 24689996 5666544
No 50
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=32.26 E-value=20 Score=24.64 Aligned_cols=9 Identities=22% Similarity=0.338 Sum_probs=7.2
Q ss_pred CCCCCeeee
Q 031749 38 SDSPTIFDK 46 (153)
Q Consensus 38 ~~~~C~FC~ 46 (153)
.+++|+||-
T Consensus 98 ~~edClFCl 106 (107)
T PF06156_consen 98 NDEDCLFCL 106 (107)
T ss_pred CCCCCcccC
Confidence 368899994
No 51
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=30.75 E-value=60 Score=23.06 Aligned_cols=13 Identities=8% Similarity=-0.087 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 031749 101 LGRLLYTAKLVAK 113 (153)
Q Consensus 101 l~~l~~~~~~~~~ 113 (153)
...+.+.+++...
T Consensus 64 ~~~ia~al~~~~~ 76 (138)
T COG0537 64 AQKIAKALKEAFG 76 (138)
T ss_pred HHHHHHHHHHHhC
Confidence 3344445555554
No 52
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=29.88 E-value=14 Score=24.75 Aligned_cols=10 Identities=10% Similarity=-0.047 Sum_probs=8.5
Q ss_pred CCCCCeeeec
Q 031749 38 SDSPTIFDKI 47 (153)
Q Consensus 38 ~~~~C~FC~i 47 (153)
+|++|+||.-
T Consensus 3 YDg~C~lC~~ 12 (114)
T PF04134_consen 3 YDGDCPLCRR 12 (114)
T ss_pred ECCCCHhHHH
Confidence 4899999985
No 53
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=27.33 E-value=71 Score=19.95 Aligned_cols=12 Identities=17% Similarity=0.069 Sum_probs=9.0
Q ss_pred CCCCCCCeeeec
Q 031749 36 VPSDSPTIFDKI 47 (153)
Q Consensus 36 ~~~~~~C~FC~i 47 (153)
|+.-+.|+||.-
T Consensus 3 ~d~lKPCPFCG~ 14 (64)
T PRK09710 3 YDNVKPCPFCGC 14 (64)
T ss_pred cccccCCCCCCC
Confidence 445678999985
No 54
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=26.91 E-value=64 Score=20.79 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=13.3
Q ss_pred CceEEEEecccCCCCCcccchhch
Q 031749 74 PTHILIIPKVKDGLTGLSKAEERH 97 (153)
Q Consensus 74 pgH~LViPk~H~~v~~l~dL~~~e 97 (153)
.-|.+|+|.+. .. +|++++
T Consensus 52 ~~~~lVlP~~P--~~---~lse~~ 70 (77)
T TIGR03793 52 TVLYLVLPVNP--DI---ELTDEQ 70 (77)
T ss_pred CeEEEEecCCC--CC---CCCHHH
Confidence 44889999987 33 667543
No 55
>TIGR01827 gatC_rel Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase, subunit C, putative. This model represents a family small family related to GatC, the third subunit of an enzyme for completing the charging of tRNA(Gln) by amidating the Glu-tRNA(Gln). The few known archaea that contain a member of this family appear to produce Asn-tRNA(Asn) by an analogous amidotransferase reaction. This protein is proposed to substitute for GatC in the charging of both tRNAs.
Probab=26.26 E-value=35 Score=21.76 Aligned_cols=20 Identities=5% Similarity=0.177 Sum_probs=17.5
Q ss_pred EEecCCCCCCceEEEEeccc
Q 031749 65 AFRDIDPQAPTHILIIPKVK 84 (153)
Q Consensus 65 a~~d~~P~~pgH~LViPk~H 84 (153)
-++..+|...+.+.+|||.|
T Consensus 51 ~iL~NAP~~edg~F~Vp~~~ 70 (73)
T TIGR01827 51 KMLENAPVSDDGYVVVERGH 70 (73)
T ss_pred HHHHcCCcccCCEEEEecCc
Confidence 34678999999999999988
No 56
>PF01868 UPF0086: Domain of unknown function UPF0086; InterPro: IPR002730 The p29 subunit (also known as Rpp29 or Pop4) of the related ribonucleoproteins ribonuclease (RNase) P and RNase MRP can be found in both eukaryotes and arachea []. The structure of the RNase P subunit, Rpp29, from Methanobacterium thermoautotrophicum has been determined. Mth Rpp29 is a member of the oligonucleotide/oligosaccharide binding fold family. It contains a structured beta-barrel core and unstructured N- and C-terminal extensions bearing several highly conserved amino acid residues that could be involved in RNA contacts in the protein-RNA complex []. Rpp29 (3.1.26.5 from EC) catalyses the endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor. It interacts with the Rpp25 and Pop5 subunits. RNase P is a ubiquitous ribonucleoprotein enzyme primarily responsible for cleaving the 5' leader sequence during maturation of tRNAs in all three domains of life. In eubacteria, this enzyme is made up of two subunits: a large RNA (approximately 120 kDa) responsible for mediating catalysis, and a small protein cofactor (approximately 15 kDa) that modulates substrate recognition and is required for efficient in vivo catalysis. In contrast, multiple proteins are associated with eukaryotic and archaeal RNase P, and these proteins exhibit no recognizable homology to the conserved bacterial protein subunit. In reconstitution experiments with recombinantly expressed and purified protein subunits Mth Rpp29, a homologue of the Rpp29 protein subunit from eukaryotic RNase P, is an essential protein component of the archaeal holoenzyme []. In Saccharomyces cerevisiae (Baker's yeast), RNase P consists of 9 protein subunits (Pop1, Pop3-8, Rpr2 and Rpp1), while in humans there are 10 subunits (Rpp14, 20, 21, 25, 29, 30, 38, 40, hPop1, 5). RNase MRP (mitochondrial RNA processing) is an rRNA processing enzyme that cleaves a specific site within precursor rRNA to generate the mature 5'-end of 5.8S rRNA []. RNase MRP also cleaves primers for mitochondrial DNA replication and CLB2 mRNA. In yeast, RNase MRP possesses one putatively catalytic RNA and at least 9 protein subunits and is highly related to RNase P (Pop1, Pop3-Pop8, Rpp1, Snm1 and Rmp1).; GO: 0003723 RNA binding, 0004540 ribonuclease activity, 0006364 rRNA processing, 0006379 mRNA cleavage, 0008033 tRNA processing, 0000172 ribonuclease MRP complex, 0030677 ribonuclease P complex; PDB: 1V76_B 2ZAE_C 1OQK_A 2KI7_A 1TSF_A 1TS9_A 1PC0_A.
Probab=25.66 E-value=1e+02 Score=20.20 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=22.5
Q ss_pred ccEEEECCeEEEEecCCCCCCceEEEEeccc
Q 031749 54 SKVVYEDDKVLAFRDIDPQAPTHILIIPKVK 84 (153)
Q Consensus 54 ~~iV~e~e~~~a~~d~~P~~pgH~LViPk~H 84 (153)
+.+|.|+.+.+.+... .|.+..|||++
T Consensus 32 GiVV~ETknt~~I~t~----~~~~~~IpK~~ 58 (89)
T PF01868_consen 32 GIVVDETKNTFVIVTE----DGKVKTIPKAG 58 (89)
T ss_dssp EEEEEEETTEEEEEET----TEEEEEEESTT
T ss_pred EEEEEcccceEEEEec----CCcEEEEecCC
Confidence 5889999999999843 34689999998
No 57
>COG4997 Uncharacterized conserved protein [Function unknown]
Probab=24.44 E-value=1e+02 Score=20.43 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=17.7
Q ss_pred hhchHHHHHHHHHHHHHHHHHhC
Q 031749 94 EERHCEILGRLLYTAKLVAKQEG 116 (153)
Q Consensus 94 ~~~e~~~l~~l~~~~~~~~~~l~ 116 (153)
++...+.+++++.++.+++.+.+
T Consensus 50 edk~lEeLadllEvi~~ia~a~g 72 (95)
T COG4997 50 EDKNLEELADLLEVISRIAEARG 72 (95)
T ss_pred hcccHHHHHHHHHHHHHHHHHhC
Confidence 34567788899998888887765
No 58
>PF00552 IN_DBD_C: Integrase DNA binding domain The structure of the C-terminal DNA binding domain.; InterPro: IPR001037 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known. However, the manner in which the N-terminal, catalytic core, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (have been studied most carefully with respect to the structural basis of catalysis. Although the active site of avian virus integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV-1 integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0003676 nucleic acid binding; PDB: 1QMC_B 1IHV_A 1IHW_B 1C6V_X 1C0M_B 1C1A_A 1EX4_A.
Probab=24.19 E-value=1.3e+02 Score=17.99 Aligned_cols=29 Identities=17% Similarity=0.444 Sum_probs=22.5
Q ss_pred CccEEEECCeEEEEecCCCCCCceEEEEeccc
Q 031749 53 PSKVVYEDDKVLAFRDIDPQAPTHILIIPKVK 84 (153)
Q Consensus 53 ~~~iV~e~e~~~a~~d~~P~~pgH~LViPk~H 84 (153)
|..++++.+..+++.+.. .+-.++||+|+
T Consensus 21 P~~vL~~G~Gav~v~~~~---~~~~~wvP~R~ 49 (55)
T PF00552_consen 21 PDPVLWWGEGAVVVKDQE---SDKPIWVPRRK 49 (55)
T ss_dssp EEEEEEECSSEEEEECSS---C--EEEEEGGG
T ss_pred hhHheeeccccEEEecCC---ccCEEEeehhH
Confidence 579999999999998654 23379999997
No 59
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=23.26 E-value=3.2e+02 Score=20.38 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=26.1
Q ss_pred HHHHHHHH-HHHHHHHhCCCCcEEEEeecCCCccceeeEEecCCCCCCC
Q 031749 100 ILGRLLYT-AKLVAKQEGLEDGFRIVINDGPNGGHFSHPRPPPRRTTNE 147 (153)
Q Consensus 100 ~l~~l~~~-~~~~~~~l~~~~g~ni~~n~g~~agq~vH~HiiPR~~~d~ 147 (153)
...+.+.. +..+.+..|...-++..++.-+. ..|+|+-+||...+..
T Consensus 99 ~~~~~~~~~~~~~~~r~g~~ni~~a~vH~DE~-tPH~H~~~vP~~~~~r 146 (196)
T PF01076_consen 99 QQKRWFEDSLEWLQERYGNENIVSAVVHLDET-TPHMHFDVVPIDEDGR 146 (196)
T ss_pred HHHHHHHHHHHHHHHHCCchhEEEEEEECCCC-CcceEEEEeecccccc
Confidence 34444443 33333444434456666776543 3567777899887653
No 60
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=22.95 E-value=4.3e+02 Score=21.76 Aligned_cols=65 Identities=22% Similarity=0.252 Sum_probs=41.0
Q ss_pred CceEE-EEecccCCCCCcccchhchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecCCCccceeeEEecCCCCCC
Q 031749 74 PTHIL-IIPKVKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGHFSHPRPPPRRTTN 146 (153)
Q Consensus 74 pgH~L-ViPk~H~~v~~l~dL~~~e~~~l~~l~~~~~~~~~~l~~~~g~ni~~n~g~~agq~vH~HiiPR~~~d 146 (153)
.|.++ .|||+- ......+.. -.+++..++++++.++...-+|+-+-.-. .|...=+.|=||.+|.
T Consensus 219 ~G~viaaV~R~K--~G~~q~l~~-----~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~-~g~p~LLEINpR~sGG 284 (329)
T PF15632_consen 219 EGRVIAAVPRRK--LGRRQVLEN-----DEELIELARRLAEAFGLDGLFNIQFRYDE-DGNPKLLEINPRPSGG 284 (329)
T ss_pred CCEEEEEEEEEe--cCceeEEEE-----CHHHHHHHHHHHHHhCCCceEEEEEEEcC-CCCEEEEEeCCCCccc
Confidence 48887 899986 433333321 23566788899999987656676554311 2233346888998875
No 61
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=22.60 E-value=1.1e+02 Score=19.28 Aligned_cols=48 Identities=10% Similarity=0.074 Sum_probs=33.0
Q ss_pred cccccchhhhhHHHHhhhcCCCCCCCeeeecccCcC-CccEEEECCeEEE
Q 031749 17 TSHLSAVVMASENEAAVAAVPSDSPTIFDKIINKEI-PSKVVYEDDKVLA 65 (153)
Q Consensus 17 ~~~~~p~~~~~~~~~~~~~~~~~~~C~FC~ii~~e~-~~~iV~e~e~~~a 65 (153)
+--.+|..+.+-+.-|.+.+.....|+|..= .+|+ .-.+|-++|+.++
T Consensus 20 Kvi~lP~SleeLl~ia~~kfg~~~~~v~~~d-gaeIdDI~~IRDgD~L~~ 68 (69)
T PF11834_consen 20 KVIWLPDSLEELLKIASEKFGFSATKVLNED-GAEIDDIDVIRDGDHLYL 68 (69)
T ss_pred EEEEcCccHHHHHHHHHHHhCCCceEEEcCC-CCEEeEEEEEEcCCEEEE
Confidence 4567899999888777777666677777763 2333 3477777777665
No 62
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=22.45 E-value=63 Score=18.54 Aligned_cols=13 Identities=46% Similarity=0.846 Sum_probs=10.9
Q ss_pred ccEEEECCeEEEE
Q 031749 54 SKVVYEDDKVLAF 66 (153)
Q Consensus 54 ~~iV~e~e~~~a~ 66 (153)
..++||+++++++
T Consensus 57 ~~i~~ed~~~lvv 69 (70)
T cd00165 57 EDIVYEDKKLLVV 69 (70)
T ss_pred cceeeccCCEEEe
Confidence 4889999998875
No 63
>PHA02458 A protein A*; Reviewed
Probab=21.42 E-value=1.2e+02 Score=24.15 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=23.4
Q ss_pred HHHHHHHHH-HHHHHHHHhCC--CCc----EEEEeecCCCccce--eeEEec
Q 031749 98 CEILGRLLY-TAKLVAKQEGL--EDG----FRIVINDGPNGGHF--SHPRPP 140 (153)
Q Consensus 98 ~~~l~~l~~-~~~~~~~~l~~--~~g----~ni~~n~g~~agq~--vH~Hii 140 (153)
+..|.+.+. +.+.++.+.|. .|. |.+. -..++++|+ +|||.+
T Consensus 45 pnalrdyfr~igr~vl~aegrsv~ds~~dcy~y~-cvpe~g~qhgrlh~h~v 95 (341)
T PHA02458 45 PNALRDYFRDIGRMVLTAEGRSVHDSSSDCYQYF-CVPEYGTQHGRLHFHAV 95 (341)
T ss_pred cHHHHHHHHHHHHHHHHhcccccccchhhhhHee-ecccccCcCceeEeeee
Confidence 466777777 56666666542 122 3222 123456676 788865
Done!