Citrus Sinensis ID: 031752

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
Protein Sequence
MGVSRNWVTFLRGLFLLLLICRSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKPADHRSDL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHccccccEEcHHHHHHHHHcccEEEEcccHHHHHHccccccccccccccccccccccccHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHHHccccccccccccHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHccccccccEccHHHHHHHHHcccEEEEcccHHHHHHccccccEEEcccEEccccccccccHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHcccccEEccHHHHHHHHHcccccccccccHHHHccc
Coil and Loop (DISEMBL)
MGVSRNWVTFLRGLFLLLLICRSSGAEVITVDVRAAKNLLEsgygyldvrtaeefKEGHVDAakifnipymfntpegrvknpdFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGfkhvsnfgggHMAWVQNGlkvkarekpadhrsdl
Flexible Loop (DISEMBL)
MGVSRNWVTFLRGLFLLLLICRSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMfntpegrvknPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGlkvkarekpadhrsdl
Low Complexity Region (SEG)
MGVSRNWVTflrglfllllICRSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKPADHRSDL
Disordered region (IsUnstruct)
****RNWVTFLRGLFLLLLICRSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKH*******************************
Disordered Region (DISOPRED)
****RNWVTFLRGLFLLLLICRSSG****TVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVK*****KKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNG****************
Disordered Region (DISEMBL)
MGVSRNWVTFLRGLFLLLLICRSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVK************
Disordered Region (DISPRO)
MGVSRNWVTFLRGLFLLLLICRSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVK************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGVSRNWVTFLRGLFLLLLICRSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKPADHRSDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	153	2.2.26 [Sep-21-2011]
Q9FKW8	136	Thiosulfate sulfurtransfe	yes	no	0.777	0.875	0.579	2e-37
F4IPI4	156	Rhodanese-like domain-con	no	no	0.882	0.865	0.496	2e-36
Q8RUD6	169	Rhodanese-like domain-con	no	no	0.843	0.763	0.492	1e-29
Q39129	120	Thiosulfate sulfurtransfe	no	no	0.725	0.925	0.513	1e-25
Q38853	182	Rhodanese-like domain-con	no	no	0.718	0.604	0.446	4e-25
P27626	183	Senescence-associated pro	N/A	no	0.718	0.601	0.446	8e-25
O48529	234	Rhodanese-like domain-con	no	no	0.666	0.435	0.284	3e-06
Q94A65	224	Rhodanese-like domain-con	no	no	0.764	0.522	0.278	5e-06
Q10215	142	Putative thiosulfate sulf	yes	no	0.516	0.556	0.297	9e-06
Q7D5X9	392	Probable adenylyltransfer	yes	no	0.607	0.237	0.315	0.0002

>sp|Q9FKW8|STR18_ARATH Thiosulfate sulfurtransferase 18 OS=Arabidopsis thaliana GN=STR18 PE=1 SV=1

 Score =  154 bits (389), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 69/119 (57%), Positives = 90/119 (75%)

Query: 27  EVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLK 86
           EV++VDV  AK LL+SG+ YLDVRT +EF+ GH +AAKI NIPYM NTP+GRVKN +FL+
Sbjct: 13  EVVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLE 72

Query: 87  KVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREK 145
           +V SL    D ++VGCQSGARSL AT +L+ AG+K V N GGG++AWV +   +   E+
Sbjct: 73  QVSSLLNPADDILVGCQSGARSLKATTELVAAGYKKVRNVGGGYLAWVDHSFPINTEEE 131

Catalyzes the transfer of a sulfur ion from a donor to cyanide or to other thiol compounds. Substrate preference is thiosulfate > 3-mercaptopyruvate.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: 1

>sp|F4IPI4|STR17_ARATH Rhodanese-like domain-containing protein 17 OS=Arabidopsis thaliana GN=STR17 PE=2 SV=1

 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 93/143 (65%), Gaps = 8/143 (5%)

Query: 11  LRGLFLLLLI--------CRSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDA 62
           LR   LL ++           S  +VIT+DV  A+ LL+SGY +LDVRT EEFK+GHVD+
Sbjct: 7   LRSFLLLFIVFNHLPRTTTSMSEPKVITIDVNQAQKLLDSGYTFLDVRTVEEFKKGHVDS 66

Query: 63  AKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKH 122
             +FN+PY   TP+G+  NP+FLK V SLC + D L++GC+SG RSLHAT  L+ +GFK 
Sbjct: 67  ENVFNVPYWLYTPQGQEINPNFLKHVSSLCNQTDHLILGCKSGVRSLHATKFLVSSGFKT 126

Query: 123 VSNFGGGHMAWVQNGLKVKAREK 145
           V N  GG++AWV     VK   K
Sbjct: 127 VRNMDGGYIAWVNKRFPVKVEHK 149

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RUD6|STR19_ARATH Rhodanese-like domain-containing protein 19, mitochondrial OS=Arabidopsis thaliana GN=STR19 PE=2 SV=1

 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/134 (49%), Positives = 85/134 (63%), Gaps = 5/134 (3%)

Query: 15  FLLLLICRSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNT 74
           FL+      +  +V TVDV  AK  L +G+ YLDVRT EEF + HV+ A   NIPYMF T
Sbjct: 28  FLMEETKPKTVEDVETVDVYTAKGFLSTGHRYLDVRTNEEFAKSHVEEA--LNIPYMFKT 85

Query: 75  PEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWV 134
            EGRV NPDFL +V S+CK+++ L+V C +G R   A  DLL  G+ HV+N GGG+ AWV
Sbjct: 86  DEGRVINPDFLSQVASVCKKDEHLIVACNAGGRGSRACVDLLNEGYDHVANMGGGYSAWV 145

Query: 135 QNGLKVKAREKPAD 148
             G    A +KP +
Sbjct: 146 DAGF---AGDKPPE 156

Arabidopsis thaliana (taxid: 3702)

>sp|Q39129|STR16_ARATH Thiosulfate sulfurtransferase 16, chloroplastic OS=Arabidopsis thaliana GN=STR16 PE=1 SV=2

 Score =  115 bits (288), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/113 (51%), Positives = 73/113 (64%), Gaps = 2/113 (1%)

Query: 30  TVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVR 89
           +V V  A +LL +G+ YLDVRT EEF +GH  A    N+PYM     G  KNPDFL++V 
Sbjct: 10  SVSVTVAHDLLLAGHRYLDVRTPEEFSQGH--ACGAINVPYMNRGASGMSKNPDFLEQVS 67

Query: 90  SLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA 142
           S   + D ++VGCQSG RS+ AT DLL AGF  V +  GG+ AW +NGL  KA
Sbjct: 68  SHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTKA 120

Thought to act during the early stages of leaf senescence. Catalyzes the transfer of a sulfur ion from a donor to cyanide or to other thiol compounds. Substrate preference is thiosulfate > 3-mercaptopyruvate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|Q38853|STR15_ARATH Rhodanese-like domain-containing protein 15, chloroplastic OS=Arabidopsis thaliana GN=STR15 PE=2 SV=1

 Score =  113 bits (283), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 74/112 (66%), Gaps = 2/112 (1%)

Query: 30  TVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVR 89
           +V VR A+ L ++GY YLDVRT +EF  GH    +  N+PYM+    G VKNP FL++V 
Sbjct: 72  SVPVRVARELAQAGYRYLDVRTPDEFSIGH--PTRAINVPYMYRVGSGMVKNPSFLRQVS 129

Query: 90  SLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVK 141
           S  ++ D +++GC+SG  S  A+ DLL AGF  +++  GG++AW +N L V+
Sbjct: 130 SHFRKHDEIIIGCESGQMSFMASTDLLTAGFTAITDIAGGYVAWTENELPVE 181

Arabidopsis thaliana (taxid: 3702)

>sp|P27626|DIN1_RAPSA Senescence-associated protein DIN1 OS=Raphanus sativus GN=DIN1 PE=2 SV=1

 Score =  112 bits (281), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 76/112 (67%), Gaps = 2/112 (1%)

Query: 30  TVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVR 89
           +V VR A+ L ++GY +LDVRT +EF  GH   ++  N+PYM+    G VKNP FL++V 
Sbjct: 73  SVPVRVARELAQAGYKHLDVRTPDEFSIGH--PSRAINVPYMYRVGSGMVKNPSFLRQVS 130

Query: 90  SLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVK 141
           S  ++ D +++GC+SG RSL A+ +LL AGF  V++  GG++ W +N L V+
Sbjct: 131 SHFRKHDEIIIGCESGERSLMASTELLTAGFTGVTDIAGGYVPWTENELPVE 182

Is thought to act during the early stages of leaf senescence.

Raphanus sativus (taxid: 3726)

>sp|O48529|STR9_ARATH Rhodanese-like domain-containing protein 9, chloroplastic OS=Arabidopsis thaliana GN=STR9 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 28/130 (21%)

Query: 25  GAEVITVDVRAAKNLL-ESGYGYLDVRTAEEFKEGHVDAAKIFNIPYM------------ 71
            AE+  V+   AK L+ E GY  +DVR   +F+  H+ +    +IP              
Sbjct: 46  AAELKFVNAEEAKQLIAEEGYSVVDVRDKTQFERAHIKSCS--HIPLFIYNEDNDIGTII 103

Query: 72  ------------FNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAG 119
                       F  P  +V NP+FLK VR+   ++ +L++ CQ G RS  A + L  AG
Sbjct: 104 KRTVHNNFSGLFFGLPFTKV-NPEFLKSVRNEFSQDSKLLLVCQEGLRSAAAASRLEEAG 162

Query: 120 FKHVSNFGGG 129
           +++++    G
Sbjct: 163 YENIACVTSG 172

Arabidopsis thaliana (taxid: 3702)

>sp|Q94A65|STR14_ARATH Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana GN=At4g27700 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 34/151 (22%)

Query: 28  VITVDVRAAKNLL-ESGYGYLDVRTAEEFKEGHV------------------DAAKIFNI 68
           V +VDV+ A+ L  E+ +  LDVR   E+K GH                   D A+    
Sbjct: 74  VRSVDVKEAQRLQKENNFVILDVRPEAEYKAGHPPGAINVEMYRLIREWTAWDIARRLGF 133

Query: 69  PYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSG--------------ARSLHATAD 114
            + F    G  +NP+F++ V +   +E +++V C S               +RSL A   
Sbjct: 134 AF-FGIFSGTEENPEFIQSVEAKLDKEAKIIVACSSAGTMKPTQNLPEGQQSRSLIAAYL 192

Query: 115 LLGAGFKHVSNFGGGHMAWVQNGLKVKAREK 145
           L+  G+K+V +  GG   W + GL V+  E+
Sbjct: 193 LVLNGYKNVFHLEGGIYTWGKEGLPVETIEE 223

Arabidopsis thaliana (taxid: 3702)

>sp|Q10215|RDL_SCHPO Putative thiosulfate sulfurtransferase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4H3.07c PE=3 SV=2

 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 15/94 (15%)

Query: 47  LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVK-----NPDFLKKVRSLCKE--EDRLV 99
           +DVR  +EFK+G ++ +        +N P G+++     + +   K     K   ED +V
Sbjct: 50  IDVREPDEFKQGAIETS--------YNLPVGKIEEAMKLSDEEFSKTYGFSKPVFEDNVV 101

Query: 100 VGCQSGARSLHATADLLGAGFKHVSNFGGGHMAW 133
           V C+SG RS  A+  L   G+K++ N+ G  + W
Sbjct: 102 VYCRSGRRSTTASDILTKLGYKNIGNYTGSWLEW 135

Thiosulfate sulfurtransferase which catalyzes the transfer of sulfane sulfur from thiosulfate to cyanide.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|Q7D5X9|MOEZ_MYCTU Probable adenylyltransferase/sulfurtransferase MoeZ OS=Mycobacterium tuberculosis GN=moeZ PE=1 SV=1

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 18/111 (16%)

Query: 30  TVDVRAAKNLLESG--YGYLDVRTAEEFKEGHVDAAKIFNIP-YMFNTPEGRVKNPDFLK 86
           T+  R  ++ L+SG     +DVR   E+   H+D A++  IP  + N+ EG  K P    
Sbjct: 288 TITPRELRDWLDSGRKLALIDVRDPVEWDIVHIDGAQL--IPKSLINSGEGLAKLP---- 341

Query: 87  KVRSLCKEEDRL-VVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQN 136
                   +DR  V+ C++G RS  A A +  AGF    +  GG +AW + 
Sbjct: 342 --------QDRTAVLYCKTGVRSAEALAAVKKAGFSDAVHLQGGIVAWAKQ 384

Catalyzes the conversion of the sulfur carrier protein CysO to CysO-thiocarboxylate. The reaction is thought to proceed in two steps: first, ATP-dependent activation of CysO as acyl-adenylate (CysO-COOAMP), followed by sulfur transfer to give CysO-thiocarboxylate (CysO-COSH) (Probable). The sulfur source is unknown.

Mycobacterium tuberculosis (taxid: 1773)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
224133664	134	predicted protein [Populus trichocarpa]	0.836	0.955	0.687	2e-47
356559276	157	PREDICTED: senescence-associated protein	0.790	0.770	0.685	5e-44
351722436	158	uncharacterized protein LOC100305809 [Gl	0.790	0.765	0.661	1e-41
356496631	149	PREDICTED: thiosulfate sulfurtransferase	0.849	0.872	0.604	1e-41
225431104	129	PREDICTED: thiosulfate sulfurtransferase	0.764	0.906	0.649	2e-40
357483815	145	Thiosulfate sulfurtransferase [Medicago	0.908	0.958	0.592	2e-40
358248854	149	uncharacterized protein LOC100803436 pre	0.875	0.899	0.594	2e-40
357518001	131	Thiosulfate sulfurtransferase [Medicago	0.784	0.916	0.641	6e-40
388515829	152	unknown [Lotus japonicus]	0.790	0.796	0.644	7e-40
388521019	150	unknown [Lotus japonicus]	0.947	0.966	0.577	2e-39

>gi|224133664|ref|XP_002327650.1| predicted protein [Populus trichocarpa] gi|222836735|gb|EEE75128.1| predicted protein [Populus trichocarpa]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/128 (68%), Positives = 106/128 (82%)

Query: 22  RSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN 81
           +S+GAEV+TVDV+A K LLESGY YLDVRT EE+ +GHVD  KIFNIPY+FNTPEGRVKN
Sbjct: 6   KSTGAEVVTVDVKATKGLLESGYTYLDVRTVEEYNKGHVDGEKIFNIPYLFNTPEGRVKN 65

Query: 82  PDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVK 141
           P+FLK+V  +CKEED+L+VGCQSG RSL+ATADLL AGFK VSN GGG++AW +N   VK
Sbjct: 66  PNFLKEVSGVCKEEDKLLVGCQSGVRSLYATADLLSAGFKDVSNVGGGYLAWTENVFPVK 125

Query: 142 AREKPADH 149
             ++  D 
Sbjct: 126 IEKRERDE 133

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559276|ref|XP_003547926.1| PREDICTED: senescence-associated protein DIN1-like [Glycine max]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 83/121 (68%), Positives = 99/121 (81%)

Query: 22  RSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN 81
            SSG EV+TVDV A K+L+++ + YLDVRT EEF++GHVDA KI NIPYMFNTPEGRVKN
Sbjct: 7   ESSGPEVVTVDVHATKDLIQTSHVYLDVRTVEEFQKGHVDAEKIINIPYMFNTPEGRVKN 66

Query: 82  PDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVK 141
           P+FLK+V S CK+ED ++VGCQSG RSL+ATADLL  GFK VSN GGG+M WV+    VK
Sbjct: 67  PEFLKEVSSACKKEDHIIVGCQSGVRSLYATADLLTEGFKDVSNMGGGYMDWVKKEFPVK 126

Query: 142 A 142
           A
Sbjct: 127 A 127

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722436|ref|NP_001236988.1| uncharacterized protein LOC100305809 [Glycine max] gi|255626667|gb|ACU13678.1| unknown [Glycine max]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 80/121 (66%), Positives = 98/121 (80%)

Query: 22  RSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN 81
            SSG EV+TVDV A K+L+++ + YLDVRT EEF++GHVDA KI N+ YMFNTPEGRVKN
Sbjct: 7   ESSGPEVVTVDVHATKDLIQTSHVYLDVRTVEEFQKGHVDAEKIINVAYMFNTPEGRVKN 66

Query: 82  PDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVK 141
           P+FLK+V   CK+ D ++VGCQSG RSL+ATADLL  GFK VSN GGG++ WV+N L VK
Sbjct: 67  PEFLKEVSYACKKGDHIIVGCQSGVRSLYATADLLTEGFKDVSNMGGGYLDWVKNELPVK 126

Query: 142 A 142
           A
Sbjct: 127 A 127

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496631|ref|XP_003517169.1| PREDICTED: thiosulfate sulfurtransferase, chloroplastic-like [Glycine max]

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/134 (60%), Positives = 102/134 (76%), Gaps = 4/134 (2%)

Query: 7   WVTFLRGLFLLLLICRSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIF 66
           W  FL  LF+L     SSGA+V+ +DV AAK L+++G  YLDVRT EEFK+GHVDA  + 
Sbjct: 11  WSVFLLFLFVLC----SSGAKVVAIDVHAAKRLIQTGSIYLDVRTVEEFKKGHVDAVNVL 66

Query: 67  NIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNF 126
           NIPYM NTP+G+VKNPDFLK+V S C +ED L++GCQSG RSL+ATADLL  GFK+V + 
Sbjct: 67  NIPYMLNTPKGKVKNPDFLKEVSSACNKEDHLILGCQSGVRSLYATADLLSEGFKNVKDM 126

Query: 127 GGGHMAWVQNGLKV 140
           GGG++ WV+N   V
Sbjct: 127 GGGYVDWVKNKFPV 140

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431104|ref|XP_002265009.1| PREDICTED: thiosulfate sulfurtransferase, chloroplastic [Vitis vinifera] gi|297734996|emb|CBI17358.3| unnamed protein product [Vitis vinifera]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 76/117 (64%), Positives = 94/117 (80%)

Query: 22  RSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN 81
           +SS  EV+T+DV AAK+L+ SGY YLDVRT EEFK+GH D   I NIPY+F TPEGRVKN
Sbjct: 4   QSSATEVVTIDVHAAKDLINSGYRYLDVRTVEEFKKGHADVENILNIPYLFTTPEGRVKN 63

Query: 82  PDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGL 138
           P+FL++V+  C +ED L+VGCQSG RSL AT+ L+ AGFK V + GGG++AWVQNGL
Sbjct: 64  PEFLEQVQFACSKEDHLIVGCQSGVRSLAATSVLVSAGFKDVKDIGGGYLAWVQNGL 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483815|ref|XP_003612194.1| Thiosulfate sulfurtransferase [Medicago truncatula] gi|355513529|gb|AES95152.1| Thiosulfate sulfurtransferase [Medicago truncatula] gi|388513883|gb|AFK45003.1| unknown [Medicago truncatula]

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 83/140 (59%), Positives = 106/140 (75%), Gaps = 1/140 (0%)

Query: 2   GVSRNWVTFLRGLFLLLL-ICRSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHV 60
            VS N +      FLLL+ +  SSGA+V+T+DV AAKNL+++G+ YLDVRT EEF++GHV
Sbjct: 3   AVSANLLPRCLAFFLLLVFVLCSSGAKVVTIDVHAAKNLIQTGHIYLDVRTVEEFEKGHV 62

Query: 61  DAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGF 120
           DA KI NIPY+ +TP+GRVKN +F+K+V S C +ED LVVGCQSG RS  AT++LL  GF
Sbjct: 63  DATKIINIPYLLDTPKGRVKNLNFVKQVSSSCDKEDCLVVGCQSGKRSFSATSELLADGF 122

Query: 121 KHVSNFGGGHMAWVQNGLKV 140
           K+V N GGG+M WV N L V
Sbjct: 123 KNVHNMGGGYMEWVSNKLPV 142

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248854|ref|NP_001240207.1| uncharacterized protein LOC100803436 precursor [Glycine max] gi|255638114|gb|ACU19371.1| unknown [Glycine max]

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/138 (59%), Positives = 103/138 (74%), Gaps = 4/138 (2%)

Query: 7   WVTFLRGLFLLLLICRSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIF 66
           W  FL  LF+L +    SGA+V+T+DVRAAK+L+++G  YLDVRT EEFK+GHV A  + 
Sbjct: 11  WSVFLLFLFVLCI----SGAKVVTIDVRAAKSLIQTGSIYLDVRTVEEFKKGHVYADNVL 66

Query: 67  NIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNF 126
           NIPYM NTP+G+VKN DFLK+V S C +ED LVVGCQSG RSL+ATADLL  GFK+  + 
Sbjct: 67  NIPYMLNTPKGKVKNGDFLKEVSSACNKEDHLVVGCQSGVRSLYATADLLSDGFKNAKDM 126

Query: 127 GGGHMAWVQNGLKVKARE 144
           GGG++ WV+N   V   E
Sbjct: 127 GGGYVDWVKNKFPVNIPE 144

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518001|ref|XP_003629289.1| Thiosulfate sulfurtransferase [Medicago truncatula] gi|355523311|gb|AET03765.1| Thiosulfate sulfurtransferase [Medicago truncatula]

 Score =  168 bits (426), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 95/120 (79%)

Query: 22  RSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN 81
            SS  EV+TVDV A K+L+++ + YLDVRT EEF++GHVD+ KI NI YMFNTPEGRVKN
Sbjct: 7   ESSKTEVVTVDVLATKSLIKTTHVYLDVRTVEEFQKGHVDSEKIINIAYMFNTPEGRVKN 66

Query: 82  PDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVK 141
           P+FLK+V SLC +ED L+VGCQSG RS++ATADLL  GFK V N GGG++ WV+    VK
Sbjct: 67  PEFLKEVSSLCNKEDHLIVGCQSGVRSVYATADLLAEGFKDVYNMGGGYLEWVKKEFPVK 126

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515829|gb|AFK45976.1| unknown [Lotus japonicus]

 Score =  168 bits (426), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 78/121 (64%), Positives = 96/121 (79%)

Query: 22  RSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN 81
            SS  EV+TVDV AAK L+++ + YLDVRT EEF++GHVD  KI NIPYMFNTPEGRVKN
Sbjct: 7   ESSKPEVVTVDVVAAKGLIQTTHVYLDVRTVEEFEKGHVDTVKIINIPYMFNTPEGRVKN 66

Query: 82  PDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVK 141
            +F K++ S CK+ED ++VGCQSG RSL+ATADLL  GFK VSN GGG++ W++N   VK
Sbjct: 67  QEFRKELLSACKKEDHVIVGCQSGVRSLYATADLLAEGFKDVSNMGGGYVDWLKNEFPVK 126

Query: 142 A 142
           A
Sbjct: 127 A 127

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521019|gb|AFK48571.1| unknown [Lotus japonicus]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 86/149 (57%), Positives = 107/149 (71%), Gaps = 4/149 (2%)

Query: 1   MGVSRNWVTFLRGLFLLLLICRSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHV 60
           M VSR  +     L LL  +   S A+V+TVDV AAK L+++G+ YLDVRT  EF EGHV
Sbjct: 1   MAVSRTLLPRWSPLVLLPFVFCISAAKVVTVDVHAAKRLIQNGHTYLDVRTVNEFVEGHV 60

Query: 61  DAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGARSLHATADLLGAG 119
           DAAKI NIPYM +TP+GRVKN DFLK+V S+   +ED L+VGC+SG RSL ATADLL  G
Sbjct: 61  DAAKIINIPYMIDTPKGRVKNQDFLKEVSSVFSNKEDHLIVGCKSGVRSLSATADLLANG 120

Query: 120 FKHVSNFGGGHMAWVQNGLKVKAREKPAD 148
           +K+V++ GGG+M WV+N   V A   PAD
Sbjct: 121 YKNVNDMGGGYMDWVRNKFPVNA---PAD 146

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
TAIR|locus:2827795	156	AT2G17850 "AT2G17850" [Arabido	0.797	0.782	0.549	2e-33
TAIR|locus:2156882	138	STR18 "AT5G66170" [Arabidopsis	0.777	0.862	0.570	2.5e-33
TAIR|locus:505006261	169	AT2G21045 [Arabidopsis thalian	0.764	0.692	0.524	4.4e-29
UNIPROTKB|B2C7Y6	185	NRIP1 "Chloroplast N receptor-	0.699	0.578	0.504	5.9e-25
TAIR|locus:2156937	120	STR16 "AT5G66040" [Arabidopsis	0.725	0.925	0.513	7.6e-25
TAIR|locus:2128038	182	SEN1 "AT4G35770" [Arabidopsis	0.718	0.604	0.455	8.7e-24
UNIPROTKB|F1S179	131	TSTD1 "Uncharacterized protein	0.673	0.786	0.345	8.7e-08
TAIR|locus:2059999	234	AT2G42220 "AT2G42220" [Arabido	0.339	0.222	0.377	1.2e-07
UNIPROTKB|Q607E4	120	MCA1816 "Sulfurtransferase" [M	0.562	0.716	0.371	1.4e-07
POMBASE|SPAC4H3.07c	142	SPAC4H3.07c "protein phosphata	0.594	0.640	0.303	2.9e-07

TAIR|locus:2827795 AT2G17850 "AT2G17850" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 67/122 (54%), Positives = 87/122 (71%)

Query:    24 SGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPD 83
             S  +VIT+DV  A+ LL+SGY +LDVRT EEFK+GHVD+  +FN+PY   TP+G+  NP+
Sbjct:    28 SEPKVITIDVNQAQKLLDSGYTFLDVRTVEEFKKGHVDSENVFNVPYWLYTPQGQEINPN 87

Query:    84 FLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAR 143
             FLK V SLC + D L++GC+SG RSLHAT  L+ +GFK V N  GG++AWV     VK  
Sbjct:    88 FLKHVSSLCNQTDHLILGCKSGVRSLHATKFLVSSGFKTVRNMDGGYIAWVNKRFPVKVE 147

Query:   144 EK 145
              K
Sbjct:   148 HK 149

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2156882 STR18 "AT5G66170" [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 69/121 (57%), Positives = 90/121 (74%)

Query:    27 EVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLK 86
             EV++VDV  AK LL+SG+ YLDVRT +EF+ GH +AAKI NIPYM NTP+GRVKN +FL+
Sbjct:    13 EVVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLE 72

Query:    87 KVRSLCKEEDRLVVGCQSGARSLHATADLLGA--GFKHVSNFGGGHMAWVQNGLKVKARE 144
             +V SL    D ++VGCQSGARSL AT +L+ A  G+K V N GGG++AWV +   +   E
Sbjct:    73 QVSSLLNPADDILVGCQSGARSLKATTELVAAVSGYKKVRNVGGGYLAWVDHSFPINTEE 132

Query:   145 K 145
             +
Sbjct:   133 E 133

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:505006261 AT2G21045 [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 64/122 (52%), Positives = 81/122 (66%)

Query:    27 EVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLK 86
             +V TVDV  AK  L +G+ YLDVRT EEF + HV+ A   NIPYMF T EGRV NPDFL 
Sbjct:    40 DVETVDVYTAKGFLSTGHRYLDVRTNEEFAKSHVEEA--LNIPYMFKTDEGRVINPDFLS 97

Query:    87 KVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKP 146
             +V S+CK+++ L+V C +G R   A  DLL  G+ HV+N GGG+ AWV  G    A +KP
Sbjct:    98 QVASVCKKDEHLIVACNAGGRGSRACVDLLNEGYDHVANMGGGYSAWVDAGF---AGDKP 154

Query:   147 AD 148
              +
Sbjct:   155 PE 156

GO:0005737 "cytoplasm" evidence=ISM

GO:0007568 "aging" evidence=ISS;TAS

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

UNIPROTKB|B2C7Y6 NRIP1 "Chloroplast N receptor-interacting protein 1" [Nicotiana benthamiana (taxid:4100)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 55/109 (50%), Positives = 72/109 (66%)

Query:    30 TVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVR 89
             +V VR A  LL++G+ YLDVRTAEEF +GH   A   NIPYMF    G +KNP+F ++V 
Sbjct:    75 SVPVRVALELLQAGHRYLDVRTAEEFSDGHAPGA--INIPYMFRIGSGMIKNPNFAEQVL 132

Query:    90 SLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGL 138
                 ++D ++VGCQ G RS  A  DLL AGF  V++  GG+ AW +NGL
Sbjct:   133 EHFGKDDEIIVGCQLGKRSFMAATDLLAAGFSGVTDIAGGYAAWTENGL 181

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2156937 STR16 "AT5G66040" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 58/113 (51%), Positives = 73/113 (64%)

Query:    30 TVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVR 89
             +V V  A +LL +G+ YLDVRT EEF +GH   A   N+PYM     G  KNPDFL++V 
Sbjct:    10 SVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGA--INVPYMNRGASGMSKNPDFLEQVS 67

Query:    90 SLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA 142
             S   + D ++VGCQSG RS+ AT DLL AGF  V +  GG+ AW +NGL  KA
Sbjct:    68 SHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTKA 120

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

TAIR|locus:2128038 SEN1 "AT4G35770" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 51/112 (45%), Positives = 74/112 (66%)

Query:    30 TVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVR 89
             +V VR A+ L ++GY YLDVRT +EF  GH   A   N+PYM+    G VKNP FL++V 
Sbjct:    72 SVPVRVARELAQAGYRYLDVRTPDEFSIGHPTRA--INVPYMYRVGSGMVKNPSFLRQVS 129

Query:    90 SLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVK 141
             S  ++ D +++GC+SG  S  A+ DLL AGF  +++  GG++AW +N L V+
Sbjct:   130 SHFRKHDEIIIGCESGQMSFMASTDLLTAGFTAITDIAGGYVAWTENELPVE 181

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=IEP;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

UNIPROTKB|F1S179 TSTD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 38/110 (34%), Positives = 50/110 (45%)

Query:    30 TVDVRAAKNLLESGYGYL-DVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKV 88
             TV +   ++LL SG   L DVR+ EE   G +  A   NIP +          P   K +
Sbjct:    22 TVSLSELRSLLASGRARLIDVRSREEAAAGTIPGA--LNIP-VSELESALQMEPAAFKAL 78

Query:    89 RSLCK---EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQ 135
              S  K   EE+ L+  CQ G R L AT    G G+K   N+ G +  W Q
Sbjct:    79 YSAEKPKLEEENLIFFCQMGKRGLQATQLAQGLGYKGARNYEGAYREWFQ 128

GO:0005739 "mitochondrion" evidence=IEA

TAIR|locus:2059999 AT2G42220 "AT2G42220" [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 20/53 (37%), Positives = 34/53 (64%)

Query:    72 FNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVS 124
             F  P  +V NP+FLK VR+   ++ +L++ CQ G RS  A + L  AG+++++
Sbjct:   116 FGLPFTKV-NPEFLKSVRNEFSQDSKLLLVCQEGLRSAAAASRLEEAGYENIA 167

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

UNIPROTKB|Q607E4 MCA1816 "Sulfurtransferase" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 36/97 (37%), Positives = 50/97 (51%)

Query:    47 LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVK-NPDFLKKVRSLCKEEDRLVVGCQSG 105
             LDVR  EE+  GH+  A   NIP      E R++ +P F  K      ++  +VV CQSG
Sbjct:    34 LDVREPEEYAAGHLPGA--INIPR--GVVEFRIETHPVFQGK------KDAAIVVYCQSG 83

Query:   106 ARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA 142
              RS  AT  L   G++   +  GG  AW++ GL V +
Sbjct:    84 LRSTLATDILQQLGWRGTVSMAGGFKAWIEGGLPVSS 120

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPAC4H3.07c SPAC4H3.07c "protein phosphatase Fmp31 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 30/99 (30%), Positives = 53/99 (53%)

Query:    47 LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKE--EDRLVVGCQS 104
             +DVR  +EFK+G ++ +  +N+P        ++ + +F  K     K   ED +VV C+S
Sbjct:    50 IDVREPDEFKQGAIETS--YNLPVGKIEEAMKLSDEEF-SKTYGFSKPVFEDNVVVYCRS 106

Query:   105 GARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAR 143
             G RS  A+  L   G+K++ N+ G  + W     K+K++
Sbjct:   107 GRRSTTASDILTKLGYKNIGNYTGSWLEWSD---KIKSK 142

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISS;IDA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FKW8	STR18_ARATH	2, ., 8, ., 1, ., 1	0.5798	0.7777	0.875	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.8.1.1	0.824
3rd Layer	2.8.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	153
PLN02160	136	PLN02160, PLN02160, thiosulfate sulfurtransferase	4e-47
smart00450	100	smart00450, RHOD, Rhodanese Homology Domain	7e-15
cd00158	89	cd00158, RHOD, Rhodanese Homology Domain (RHOD); a	3e-14
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	2e-11
COG0607	110	COG0607, PspE, Rhodanese-related sulfurtransferase	3e-11
pfam00581	106	pfam00581, Rhodanese, Rhodanese-like domain	4e-11
cd01519	106	cd01519, RHOD_HSP67B2, Member of the Rhodanese Hom	9e-10
cd01522	117	cd01522, RHOD_1, Member of the Rhodanese Homology	2e-09
PRK07878	392	PRK07878, PRK07878, molybdopterin biosynthesis-lik	1e-07
PRK07411	390	PRK07411, PRK07411, hypothetical protein; Validate	1e-06
cd01447	103	cd01447, Polysulfide_ST, Polysulfide-sulfurtransfe	2e-06
cd01528	101	cd01528, RHOD_2, Member of the Rhodanese Homology	2e-06
PRK05597	355	PRK05597, PRK05597, molybdopterin biosynthesis pro	8e-06
cd01449	118	cd01449, TST_Repeat_2, Thiosulfate sulfurtransfera	1e-05
cd01529	96	cd01529, 4RHOD_Repeats, Member of the Rhodanese Ho	9e-05
cd01524	90	cd01524, RHOD_Pyr_redox, Member of the Rhodanese H	1e-04
PRK10287	104	PRK10287, PRK10287, thiosulfate:cyanide sulfurtran	1e-04
TIGR02981	101	TIGR02981, phageshock_pspE, phage shock operon rho	1e-04
COG2897	285	COG2897, SseA, Rhodanese-related sulfurtransferase	8e-04
cd01523	100	cd01523, RHOD_Lact_B, Member of the Rhodanese Homo	0.004

>gnl|CDD|177819 PLN02160, PLN02160, thiosulfate sulfurtransferase

 Score =  149 bits (376), Expect = 4e-47
 Identities = 68/108 (62%), Positives = 86/108 (79%)

Query: 27  EVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLK 86
           EV++VDV  AK LL+SG+ YLDVRT +EF+ GH +AAKI NIPYM NTP+GRVKN +FL+
Sbjct: 13  EVVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLE 72

Query: 87  KVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWV 134
           +V SL    D ++VGCQSGARSL AT +L+ AG+K V N GGG++AWV
Sbjct: 73  QVSSLLNPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWV 120

Length = 136

>gnl|CDD|197731 smart00450, RHOD, Rhodanese Homology Domain

 Score = 65.6 bits (160), Expect = 7e-15
 Identities = 27/92 (29%), Positives = 40/92 (43%)

Query: 47  LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGA 106
           LDVR+ EE++ GH+  A    +  + +               R    ++  +VV C+SG 
Sbjct: 8   LDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGN 67

Query: 107 RSLHATADLLGAGFKHVSNFGGGHMAWVQNGL 138
           RS  A   L   GFK+V    GG+  W   G 
Sbjct: 68  RSAKAAWLLRELGFKNVYLLDGGYKEWSAAGP 99

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions. Length = 100

>gnl|CDD|238089 cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

 Score = 63.9 bits (156), Expect = 3e-14
 Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 12/100 (12%)

Query: 35  AAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKE 94
             + L +     LDVR  EE+  GH+  A   NIP             +    +  L K+
Sbjct: 2   LKELLDDEDAVLLDVREPEEYAAGHIPGAI--NIPLS---------ELEERAALLELDKD 50

Query: 95  EDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWV 134
              +VV C+SG RS  A   L  AG  +V N  GG +AW 
Sbjct: 51  -KPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins. Length = 89

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 15/116 (12%)

Query: 31  VDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRS 90
           +    A+     G   +DVR A E   G  + A      ++    E  + + D       
Sbjct: 5   ISPAEARARAAQGAVLIDVREAHERASGQAEGALRIPRGFLELRIETHLPDRD------- 57

Query: 91  LCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKP 146
                  +V+ C SG RS HA A L   G+  V++  GG  AW   GL +   E+P
Sbjct: 58  -----REIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDAGLPL---ERP 105

Length = 376

>gnl|CDD|223680 COG0607, PspE, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 56.5 bits (136), Expect = 3e-11
 Identities = 40/114 (35%), Positives = 50/114 (43%), Gaps = 12/114 (10%)

Query: 28  VITVDVRAAKNLLESGYG-YLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLK 86
           + T+    A  LL       LDVR  EE++ GH+  A   NIP          +N   L 
Sbjct: 4   LETISEDEAALLLAGEDAVLLDVREPEEYERGHIPGA-AINIPLSELKAA---ENLLELP 59

Query: 87  KVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKV 140
                   +D +VV C SG RS  A A L  AGF +V N  GG  AW   GL +
Sbjct: 60  D-------DDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPL 106

Length = 110

>gnl|CDD|216005 pfam00581, Rhodanese, Rhodanese-like domain

 Score = 56.0 bits (135), Expect = 4e-11
 Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 10/106 (9%)

Query: 35  AAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKE 94
               L       +DVR+ EE+ +GH+  A   NIP    + +   K    L+++     +
Sbjct: 5   LKALLEADDVVLIDVRSPEEYAKGHIPGA--VNIPLSLPSLD---KLESELEELGKKLDK 59

Query: 95  EDRLVVGCQSGARSLHATADLLG-----AGFKHVSNFGGGHMAWVQ 135
           +  +VV C SG RS  A A LL       G+K+V    GG  AW  
Sbjct: 60  DKTIVVYCASGNRSGQAAALLLALILKALGYKNVYVLDGGFEAWKA 105

Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases. Length = 106

>gnl|CDD|238777 cd01519, RHOD_HSP67B2, Member of the Rhodanese Homology Domain superfamily

 Score = 52.7 bits (127), Expect = 9e-10
 Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 13/94 (13%)

Query: 48  DVRTAEEFKEGHVDAAKIFNIPY-----MFNTPEGRVKNPDFLKKV-RSLCKEEDRLVVG 101
           DVR  EE K G +  A   NIP           E      +F KK       ++  L+  
Sbjct: 20  DVREPEELKTGKIPGA--INIPLSSLPDALALSEE-----EFEKKYGFPKPSKDKELIFY 72

Query: 102 CQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQ 135
           C++G RS  A       G+++V N+ G  + W  
Sbjct: 73  CKAGVRSKAAAELARSLGYENVGNYPGSWLDWAA 106

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized. Length = 106

>gnl|CDD|238780 cd01522, RHOD_1, Member of the Rhodanese Homology Domain superfamily, subgroup 1

 Score = 51.9 bits (125), Expect = 2e-09
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 47  LDVRTAEEFKE-GHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSG 105
           +DVRT  E+K  G V      ++ +          NP+FL ++     ++  +++ C+SG
Sbjct: 19  VDVRTEAEWKFVGGV--PDAVHVAW--QVYPDMEINPNFLAELEEKVGKDRPVLLLCRSG 74

Query: 106 ARSLHATADLLGAGFKHVSN 125
            RS+ A      AGF +V N
Sbjct: 75  NRSIAAAEAAAQAGFTNVYN 94

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins. Length = 117

>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 14/108 (12%)

Query: 30  TVDVRAAKNLLESG--YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKK 87
           T+  R  K  L+SG     +DVR   E+   H+  A++         P+  + + + L K
Sbjct: 288 TITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLI--------PKSEILSGEALAK 339

Query: 88  VRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQ 135
           +     ++  +V+ C++G RS  A A L  AGF    +  GG +AW +
Sbjct: 340 L----PQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAK 383

Length = 392

>gnl|CDD|180967 PRK07411, PRK07411, hypothetical protein; Validated

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 13/113 (11%)

Query: 26  AEVITVDVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNP 82
           AE+  + V   K LL+SG   +  +DVR   E++        I  IP     P   ++N 
Sbjct: 279 AEIPEMTVTELKALLDSGADDFVLIDVRNPNEYE--------IARIPGSVLVPLPDIENG 330

Query: 83  DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQ 135
             ++KV+ L     RL+  C+ G RS  A   L  AG +   N  GG  AW +
Sbjct: 331 PGVEKVKELLNGH-RLIAHCKMGGRSAKALGILKEAGIEGT-NVKGGITAWSR 381

Length = 390

>gnl|CDD|238724 cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 32/109 (29%), Positives = 39/109 (35%), Gaps = 15/109 (13%)

Query: 34  RAAKNLLESGYGYLDVRTAEEFK-EGHVDAAKIFNIPY-MFN---TPEGRVKNPDFLKKV 88
            A   L   G   +DVR   E +  G +  A  F+ P  M      P+     P F    
Sbjct: 5   DARALLGSPGVLLVDVRDPRELERTGMIPGA--FHAPRGMLEFWADPDSPYHKPAF---- 58

Query: 89  RSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNG 137
                E+   V  C SG RS  A   L   G K V N  GG   W + G
Sbjct: 59  ----AEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins. Length = 103

>gnl|CDD|238786 cd01528, RHOD_2, Member of the Rhodanese Homology Domain superfamily, subgroup 2

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 47  LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGA 106
           +DVR  EE         +I  +P   + P   +  P+  K++ S   ++D +VV C  G 
Sbjct: 21  IDVREPEE--------LEIAFLPGFLHLPMSEI--PERSKELDSDNPDKD-IVVLCHHGG 69

Query: 107 RSLHATADLLGAGFKHVSNFGGGHMAWVQ 135
           RS+     LL  GF++V N  GG  AW  
Sbjct: 70  RSMQVAQWLLRQGFENVYNLQGGIDAWSL 98

Subgroup 2 includes uncharacterized putative rhodanese-related domains. Length = 101

>gnl|CDD|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated

 Score = 44.1 bits (104), Expect = 8e-06
 Identities = 32/113 (28%), Positives = 42/113 (37%), Gaps = 22/113 (19%)

Query: 24  SGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVK--- 80
            G  +    V A    L  G   +DVR   EF            IP   N P   ++   
Sbjct: 259 FGEVLDVPRVSA----LPDGVTLIDVREPSEFAAYS--------IPGAHNVPLSAIREGA 306

Query: 81  NPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAW 133
           NP  +          D +VV C +G RS  A A L  AG+  +S+  GG   W
Sbjct: 307 NPPSVSA-------GDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGW 352

Length = 355

>gnl|CDD|238726 cd01449, TST_Repeat_2, Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 16/103 (15%)

Query: 47  LDVRTAEEF-----------KEGHVDAAKIFNIPYM-FNTPEGRVKNPDFLKKV--RSLC 92
           +D R+ E F           + GH+  A   NIP+      +G  K+P+ L+ +      
Sbjct: 18  VDARSPERFRGEVPEPRPGLRSGHIPGAV--NIPWTSLLDEDGTFKSPEELRALFAALGI 75

Query: 93  KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQ 135
             +  ++V C SG  +      L   G+K+V  + G    W  
Sbjct: 76  TPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS 118

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue. Length = 118

>gnl|CDD|238787 cd01529, 4RHOD_Repeats, Member of the Rhodanese Homology Domain superfamily

 Score = 39.2 bits (91), Expect = 9e-05
 Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 10/95 (10%)

Query: 41  ESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGR-VKNPDFLKKVRSLCKEEDRLV 99
           E G   LDVR  +E+  GH        +P   + P    V     L+ + +  +   R V
Sbjct: 10  EPGTALLDVRAEDEYAAGH--------LPGKRSIPGAALVLRSQELQALEAPGRAT-RYV 60

Query: 100 VGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWV 134
           + C     +  A  +LL  G K V+   GG  AWV
Sbjct: 61  LTCDGSLLARFAAQELLALGGKPVALLDGGTSAWV 95

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats. Length = 96

>gnl|CDD|238782 cd01524, RHOD_Pyr_redox, Member of the Rhodanese Homology Domain superfamily

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 30/95 (31%), Positives = 40/95 (42%), Gaps = 21/95 (22%)

Query: 38  NLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDR 97
           N    G   +DVRT +EF++GH+  A   NIP               L ++R    E  +
Sbjct: 8   NYRADGVTLIDVRTPQEFEKGHIKGA--INIP---------------LDELRDRLNELPK 50

Query: 98  ---LVVGCQSGARSLHATADLLGAGFKHVSNFGGG 129
              ++V C  G R   A   L   GFK V N  GG
Sbjct: 51  DKEIIVYCAVGLRGYIAARILTQNGFK-VKNLDGG 84

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain. Length = 90

>gnl|CDD|182356 PRK10287, PRK10287, thiosulfate:cyanide sulfurtransferase; Provisional

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 37/124 (29%)

Query: 10  FLRGLFLLLLICRSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIP 69
           F +GL  L L        V ++ V AA++       ++DVR  E++++ HV  A   NIP
Sbjct: 2   FKKGLLALAL--------VFSLPVFAAEH-------WIDVRVPEQYQQEHVQGA--INIP 44

Query: 70  YMFNTPEGRVKNPDFLKKVRSLCKE-----EDRLVVGCQSGARSLHATADLLGAGFKHVS 124
                          LK+V+           D + + C +G +S  A   L   G+ H  
Sbjct: 45  ---------------LKEVKERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTHAE 89

Query: 125 NFGG 128
           N GG
Sbjct: 90  NAGG 93

Length = 104

>gnl|CDD|132026 TIGR02981, phageshock_pspE, phage shock operon rhodanese PspE

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 37/122 (30%)

Query: 12  RGLFLLLLICRSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71
           +G+F L L           + + AA++       ++DVR  E++++ H+  A   NIP  
Sbjct: 2   KGIFALAL--------FFALPLFAAEH-------WIDVRIPEQYQQEHIQGA--INIP-- 42

Query: 72  FNTPEGRVKNPDFLKKVRS-----LCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNF 126
                        LK+++      +  + D + + C +G +S  A   LL  G+ H  N 
Sbjct: 43  -------------LKEIKEHIATAVPDKNDTVKLYCNAGRQSGMAKDILLDMGYTHAENA 89

Query: 127 GG 128
           GG
Sbjct: 90  GG 91

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely. Length = 101

>gnl|CDD|225450 COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 19/104 (18%)

Query: 47  LDVRTAEEF----------KEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKE-- 94
           +D R+ E F          K GH+  A   NIP+     +G +           L  +  
Sbjct: 175 IDARSPERFRGKEPEPRDGKAGHIPGAI--NIPWTDLVDDGGLFKSPEEIAR--LYADAG 230

Query: 95  ---EDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQ 135
              +  ++V C SG R+      L   G  +   + G    W  
Sbjct: 231 IDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGS 274

Length = 285

>gnl|CDD|238781 cd01523, RHOD_Lact_B, Member of the Rhodanese Homology Domain superfamily

 Score = 34.4 bits (79), Expect = 0.004
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 47  LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGA 106
           LDVR   +++   +D     N PY F+     ++  + +  +  L  +++  V+ C    
Sbjct: 19  LDVRNESDYERWKIDGE--NNTPY-FDPYFDFLEIEEDI--LDQLPDDQEVTVI-CAKEG 72

Query: 107 RSLHATADLLGAGFKHVSNFGGGHMAW 133
            S    A+LL      V    GG  AW
Sbjct: 73  SSQF-VAELLAERGYDVDYLAGGMKAW 98

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain. Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	153
PLN02160	136	thiosulfate sulfurtransferase	99.95
KOG1530	136	consensus Rhodanese-related sulfurtransferase [Ino	99.94
cd01533	109	4RHOD_Repeat_2 Member of the Rhodanese Homology Do	99.92
PRK00162	108	glpE thiosulfate sulfurtransferase; Validated	99.91
cd01527	99	RHOD_YgaP Member of the Rhodanese Homology Domain	99.91
cd01518	101	RHOD_YceA Member of the Rhodanese Homology Domain	99.9
cd01519	106	RHOD_HSP67B2 Member of the Rhodanese Homology Doma	99.9
cd01523	100	RHOD_Lact_B Member of the Rhodanese Homology Domai	99.89
cd01534	95	4RHOD_Repeat_3 Member of the Rhodanese Homology Do	99.89
TIGR03865	162	PQQ_CXXCW PQQ-dependent catabolism-associated CXXC	99.89
cd01521	110	RHOD_PspE2 Member of the Rhodanese Homology Domain	99.89
cd01528	101	RHOD_2 Member of the Rhodanese Homology Domain sup	99.88
cd01524	90	RHOD_Pyr_redox Member of the Rhodanese Homology Do	99.88
cd01520	128	RHOD_YbbB Member of the Rhodanese Homology Domain	99.88
cd01444	96	GlpE_ST GlpE sulfurtransferase (ST) and homologs a	99.88
cd01526	122	RHOD_ThiF Member of the Rhodanese Homology Domain	99.88
cd01447	103	Polysulfide_ST Polysulfide-sulfurtransferase - Rho	99.87
cd01522	117	RHOD_1 Member of the Rhodanese Homology Domain sup	99.87
cd01448	122	TST_Repeat_1 Thiosulfate sulfurtransferase (TST),	99.87
cd01535	145	4RHOD_Repeat_4 Member of the Rhodanese Homology Do	99.86
cd01449	118	TST_Repeat_2 Thiosulfate sulfurtransferase (TST),	99.86
cd01525	105	RHOD_Kc Member of the Rhodanese Homology Domain su	99.86
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	99.86
smart00450	100	RHOD Rhodanese Homology Domain. An alpha beta fold	99.86
cd01530	121	Cdc25 Cdc25 phosphatases are members of the Rhodan	99.86
PF00581	113	Rhodanese: Rhodanese-like domain This Prosite entr	99.85
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.84
cd01529	96	4RHOD_Repeats Member of the Rhodanese Homology Dom	99.83
PRK01415	247	hypothetical protein; Validated	99.83
cd01532	92	4RHOD_Repeat_1 Member of the Rhodanese Homology Do	99.83
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.82
cd01445	138	TST_Repeats Thiosulfate sulfurtransferases (TST) c	99.82
TIGR02981	101	phageshock_pspE phage shock operon rhodanese PspE.	99.82
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.82
cd01531	113	Acr2p Eukaryotic arsenate resistance proteins are	99.82
COG0607	110	PspE Rhodanese-related sulfurtransferase [Inorgani	99.81
PRK10287	104	thiosulfate:cyanide sulfurtransferase; Provisional	99.81
cd00158	89	RHOD Rhodanese Homology Domain (RHOD); an alpha be	99.81
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.8
PRK05320	257	rhodanese superfamily protein; Provisional	99.8
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.8
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	99.8
cd01443	113	Cdc25_Acr2p Cdc25 enzymes are members of the Rhoda	99.8
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	99.78
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.77
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.75
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	99.75
PRK07411	390	hypothetical protein; Validated	99.74
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	99.74
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.74
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	99.73
cd01446	132	DSP_MapKP N-terminal regulatory rhodanese domain o	99.7
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	99.65
COG1054	308	Predicted sulfurtransferase [General function pred	99.51
PRK01269	482	tRNA s(4)U8 sulfurtransferase; Provisional	99.51
KOG3772	325	consensus M-phase inducer phosphatase [Cell cycle	99.4
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	99.4
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	99.27
COG5105	427	MIH1 Mitotic inducer, protein phosphatase [Cell di	98.94
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	98.93
TIGR01244	135	conserved hypothetical protein TIGR01244. No membe	97.88
PF04273	110	DUF442: Putative phosphatase (DUF442); InterPro: I	97.63
COG2603	334	Predicted ATPase [General function prediction only	97.51
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	96.87
KOG1093	725	consensus Predicted protein kinase (contains TBC a	96.84
cd00127	139	DSPc Dual specificity phosphatases (DSP); Ser/Thr	96.5
PF13350	164	Y_phosphatase3: Tyrosine phosphatase family; PDB:	96.34
PLN02727	986	NAD kinase	95.83
KOG3636	669	consensus Uncharacterized conserved protein, conta	95.28
KOG1717	343	consensus Dual specificity phosphatase [Defense me	94.33
smart00195	138	DSPc Dual specificity phosphatase, catalytic domai	93.79
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	92.69
COG3453	130	Uncharacterized protein conserved in bacteria [Fun	91.95
PRK12361	547	hypothetical protein; Provisional	90.59
PF13344	101	Hydrolase_6: Haloacid dehalogenase-like hydrolase;	89.98
PF05706	168	CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3)	89.61
PTZ00242	166	protein tyrosine phosphatase; Provisional	87.83
PTZ00393	241	protein tyrosine phosphatase; Provisional	87.21
COG2453	180	CDC14 Predicted protein-tyrosine phosphatase [Sign	86.43
PF00782	133	DSPc: Dual specificity phosphatase, catalytic doma	86.27
PRK15416	201	lipopolysaccharide core heptose(II)-phosphate phos	85.13
PF03853	169	YjeF_N: YjeF-related protein N-terminus; InterPro:	84.7
COG0062	203	Uncharacterized conserved protein [Function unknow	80.79

>PLN02160 thiosulfate sulfurtransferase

Probab=99.95  E-value=5.1e-27  Score=162.50  Aligned_cols=124  Identities=56%  Similarity=0.944  Sum_probs=106.6

Q ss_pred             cCCcceeecHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeC
Q 031752           24 SGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQ  103 (153)
Q Consensus        24 ~~~~~~~i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~  103 (153)
                      ..+.+..+++.++.++++++..|||||++.||..||||||..+|+|+....+...+..+++...+...++++++||+||+
T Consensus        10 ~~~~~~~i~~~e~~~~~~~~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC~   89 (136)
T PLN02160         10 KAEEVVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGCQ   89 (136)
T ss_pred             CceeeeEeCHHHHHHHHhCCCEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEECC
Confidence            34468899999999999877889999999999999999996678888655555566556676666554578999999999


Q ss_pred             CCccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCCCC
Q 031752          104 SGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKPA  147 (153)
Q Consensus       104 ~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~~  147 (153)
                      +|.||..++..|...||++|+.|.||+.+|.++|+|+.+...++
T Consensus        90 sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~  133 (136)
T PLN02160         90 SGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEEEEP  133 (136)
T ss_pred             CcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccccCC
Confidence            99999999999999999999999999999999999999887654

>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.94  E-value=5.9e-26  Score=152.09  Aligned_cols=117  Identities=44%  Similarity=0.715  Sum_probs=107.9

Q ss_pred             hhcCCcceeecHHHHHHHHhCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEE
Q 031752           22 RSSGAEVITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLV   99 (153)
Q Consensus        22 ~~~~~~~~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv   99 (153)
                      +........++.+++..+.+.+ .++||||.++||.+||+|.+  +|||+...++.+.+.+++|.+.+... .+.+++||
T Consensus        16 ~~~~~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~s--iNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiI   93 (136)
T KOG1530|consen   16 SKKASNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPAS--INIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEII   93 (136)
T ss_pred             hhccCCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcce--EeccccccccccccCCHHHHHHhcccCCCCCCcEE
Confidence            4455778899999999999987 99999999999999999999  99999988888999999999999998 55666999


Q ss_pred             EEeCCCccHHHHHHHHHHCCccceeeccccHHHHHhCCCce
Q 031752          100 VGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKV  140 (153)
Q Consensus       100 i~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~  140 (153)
                      ++|.+|.|+..|...|...||.||.++.|||.+|.+.+.|.
T Consensus        94 f~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~  134 (136)
T KOG1530|consen   94 FGCASGVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPK  134 (136)
T ss_pred             EEeccCcchhHHHHHHHHcCcccccccCccHHHHHHccCCC
Confidence            99999999999999999999999999999999999988765

>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2

Probab=99.92  E-value=1.1e-24  Score=145.28  Aligned_cols=101  Identities=22%  Similarity=0.391  Sum_probs=88.4

Q ss_pred             cCCcceeecHHHHHHHHhCC--CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEEE
Q 031752           24 SGAEVITVDVRAAKNLLESG--YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVV  100 (153)
Q Consensus        24 ~~~~~~~i~~~~~~~~~~~~--~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivi  100 (153)
                      .......++++++.+.++++  .+|||||++.||..||||||  +|+|+.           ++...+.++ .+++++||+
T Consensus         5 ~~~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpga--inip~~-----------~l~~~~~~l~~~~~~~ivv   71 (109)
T cd01533           5 AVRHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGS--VSCPGA-----------ELVLRVGELAPDPRTPIVV   71 (109)
T ss_pred             ccccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCc--eeCCHH-----------HHHHHHHhcCCCCCCeEEE
Confidence            34556789999999998754  58999999999999999999  999995           666666665 456889999


Q ss_pred             EeCCCccHHHHHHHHHHCCccc-eeeccccHHHHHhCC
Q 031752          101 GCQSGARSLHATADLLGAGFKH-VSNFGGGHMAWVQNG  137 (153)
Q Consensus       101 ~c~~g~~a~~~~~~L~~~G~~~-v~~l~gG~~~w~~~g  137 (153)
                      ||++|.+|..+++.|...||+| |+.|.||+.+|..+|
T Consensus        72 ~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g  109 (109)
T cd01533          72 NCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG  109 (109)
T ss_pred             ECCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence            9999999999999999999998 999999999999875

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.

>PRK00162 glpE thiosulfate sulfurtransferase; Validated

Probab=99.91  E-value=5.6e-24  Score=141.66  Aligned_cols=104  Identities=26%  Similarity=0.377  Sum_probs=92.6

Q ss_pred             CcceeecHHHHHHHHhC-CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCC
Q 031752           26 AEVITVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQS  104 (153)
Q Consensus        26 ~~~~~i~~~~~~~~~~~-~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~  104 (153)
                      .....++++++.+.+++ +.++||||++.+|..||||||  +|+|+.           +|.+.+.+ +++++++++||.+
T Consensus         2 ~~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA--~~ip~~-----------~l~~~~~~-~~~~~~ivv~c~~   67 (108)
T PRK00162          2 DQFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGA--FHLTND-----------SLGAFMRQ-ADFDTPVMVMCYH   67 (108)
T ss_pred             CCccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCC--eECCHH-----------HHHHHHHh-cCCCCCEEEEeCC
Confidence            35678999999999865 478999999999999999999  999985           66666655 4889999999999


Q ss_pred             CccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecC
Q 031752          105 GARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAR  143 (153)
Q Consensus       105 g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~  143 (153)
                      |.++..++..|+..||+||+++.||+.+|.+.+.|+++.
T Consensus        68 g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~~  106 (108)
T PRK00162         68 GNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVAS  106 (108)
T ss_pred             CCCHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccCC
Confidence            999999999999999999999999999999999988754

>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily

Probab=99.91  E-value=5.9e-24  Score=139.30  Aligned_cols=98  Identities=22%  Similarity=0.357  Sum_probs=85.5

Q ss_pred             eeecHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCccH
Q 031752           29 ITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARS  108 (153)
Q Consensus        29 ~~i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~~a  108 (153)
                      ..++++++.+.++++.+|||+|++.+|..+|||||  +|+|..           ++.+.... ++++++||+||++|.++
T Consensus         2 ~~i~~~el~~~~~~~~~liDvR~~~e~~~~hi~ga--~~ip~~-----------~~~~~~~~-~~~~~~iv~~c~~g~~s   67 (99)
T cd01527           2 TTISPNDACELLAQGAVLVDIREPDEYLRERIPGA--RLVPLS-----------QLESEGLP-LVGANAIIFHCRSGMRT   67 (99)
T ss_pred             CccCHHHHHHHHHCCCEEEECCCHHHHHhCcCCCC--EECChh-----------HhcccccC-CCCCCcEEEEeCCCchH
Confidence            56899999999887789999999999999999999  999985           22221112 47889999999999999


Q ss_pred             HHHHHHHHHCCccceeeccccHHHHHhCCCce
Q 031752          109 LHATADLLGAGFKHVSNFGGGHMAWVQNGLKV  140 (153)
Q Consensus       109 ~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~  140 (153)
                      ..++..|.+.||.+++.+.||+.+|+..|+|+
T Consensus        68 ~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~   99 (99)
T cd01527          68 QQNAERLAAISAGEAYVLEGGLDAWKAAGLPV   99 (99)
T ss_pred             HHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence            99999999999999999999999999988874

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.

>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily

Probab=99.90  E-value=6.3e-24  Score=139.76  Aligned_cols=97  Identities=26%  Similarity=0.333  Sum_probs=80.4

Q ss_pred             eeecHHHHHHHHhCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh--ccCCCeEEEEeCCC
Q 031752           29 ITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQSG  105 (153)
Q Consensus        29 ~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivi~c~~g  105 (153)
                      ..++++++.++++++ .+|||||++.||..||||||  +|+|+..+.        ++...+.+.  .+++++||+||++|
T Consensus         2 ~~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA--~~ip~~~~~--------~~~~~~~~~~~~~~~~~ivvyC~~G   71 (101)
T cd01518           2 TYLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGA--VNPDVDTFR--------EFPFWLDENLDLLKGKKVLMYCTGG   71 (101)
T ss_pred             CcCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccc--cCCCcccHh--------HhHHHHHhhhhhcCCCEEEEECCCc
Confidence            357899999988754 78999999999999999999  999985221        112222222  37899999999999


Q ss_pred             ccHHHHHHHHHHCCccceeeccccHHHHHh
Q 031752          106 ARSLHATADLLGAGFKHVSNFGGGHMAWVQ  135 (153)
Q Consensus       106 ~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~  135 (153)
                      .|+..+++.|..+||++|+.|.||+.+|.+
T Consensus        72 ~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~  101 (101)
T cd01518          72 IRCEKASAYLKERGFKNVYQLKGGILKYLE  101 (101)
T ss_pred             hhHHHHHHHHHHhCCcceeeechhHHHHhC
Confidence            999999999999999999999999999963

This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.

>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily

Probab=99.90  E-value=1.6e-23  Score=138.68  Aligned_cols=101  Identities=28%  Similarity=0.433  Sum_probs=84.4

Q ss_pred             cHHHHHHHHh-C-CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEEEEeCCCccH
Q 031752           32 DVRAAKNLLE-S-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGARS  108 (153)
Q Consensus        32 ~~~~~~~~~~-~-~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivi~c~~g~~a  108 (153)
                      +++++.++++ . +.+|||+|++.+|..||||||  +|+|+..+.........+|.+.+.+. ++++++||+||++|.++
T Consensus         2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA--~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s   79 (106)
T cd01519           2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGA--INIPLSSLPDALALSEEEFEKKYGFPKPSKDKELIFYCKAGVRS   79 (106)
T ss_pred             cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCc--EEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEEEECCCcHHH
Confidence            5788888887 4 488999999999999999999  99998765322223334676666665 56799999999999999


Q ss_pred             HHHHHHHHHCCccceeeccccHHHHH
Q 031752          109 LHATADLLGAGFKHVSNFGGGHMAWV  134 (153)
Q Consensus       109 ~~~~~~L~~~G~~~v~~l~gG~~~w~  134 (153)
                      ..+++.|...||+||+.|.||+.+|.
T Consensus        80 ~~~~~~l~~~G~~~v~~~~Gg~~~W~  105 (106)
T cd01519          80 KAAAELARSLGYENVGNYPGSWLDWA  105 (106)
T ss_pred             HHHHHHHHHcCCccceecCCcHHHHc
Confidence            99999999999999999999999995

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.

>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily

Probab=99.89  E-value=7.6e-23  Score=134.29  Aligned_cols=94  Identities=24%  Similarity=0.385  Sum_probs=78.0

Q ss_pred             ecHHHHHHHHhCC--CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHH---HHHHHhhccCCCeEEEEeCCC
Q 031752           31 VDVRAAKNLLESG--YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDF---LKKVRSLCKEEDRLVVGCQSG  105 (153)
Q Consensus        31 i~~~~~~~~~~~~--~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ivi~c~~g  105 (153)
                      |+++++.++++++  .+|||||++.||..||||||  +|+|+..+..       .+   .+...+.++++++||+||.+|
T Consensus         1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga--~~ip~~~~~~-------~~~~~~~~~~~~~~~~~~ivv~C~~G   71 (100)
T cd01523           1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGE--NNTPYFDPYF-------DFLEIEEDILDQLPDDQEVTVICAKE   71 (100)
T ss_pred             CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCC--cccccccchH-------HHHHhhHHHHhhCCCCCeEEEEcCCC
Confidence            5788999988763  68999999999999999999  9999852210       11   122223358899999999999


Q ss_pred             ccHHHHHHHHHHCCccceeeccccHHHHH
Q 031752          106 ARSLHATADLLGAGFKHVSNFGGGHMAWV  134 (153)
Q Consensus       106 ~~a~~~~~~L~~~G~~~v~~l~gG~~~w~  134 (153)
                      .+|..++..|.+.||+ ++.|.||+.+|.
T Consensus        72 ~rs~~aa~~L~~~G~~-~~~l~GG~~~W~   99 (100)
T cd01523          72 GSSQFVAELLAERGYD-VDYLAGGMKAWS   99 (100)
T ss_pred             CcHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence            9999999999999999 999999999995

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.

>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3

Probab=99.89  E-value=1e-22  Score=132.57  Aligned_cols=90  Identities=22%  Similarity=0.310  Sum_probs=77.1

Q ss_pred             ecHHHHHHHHhCC---CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEEEEeCCCc
Q 031752           31 VDVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGA  106 (153)
Q Consensus        31 i~~~~~~~~~~~~---~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivi~c~~g~  106 (153)
                      |+++++.++++++   .++||||++.||..||||||  +|+|..           ++.....++ ..++++||+||++|.
T Consensus         1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga--~~ip~~-----------~l~~~~~~~~~~~~~~iv~~c~~G~   67 (95)
T cd01534           1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGF--RHTPGG-----------QLVQETDHFAPVRGARIVLADDDGV   67 (95)
T ss_pred             CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCc--EeCCHH-----------HHHHHHHHhcccCCCeEEEECCCCC
Confidence            5788999988753   67999999999999999999  999985           454444443 235789999999999


Q ss_pred             cHHHHHHHHHHCCccceeeccccHHHHH
Q 031752          107 RSLHATADLLGAGFKHVSNFGGGHMAWV  134 (153)
Q Consensus       107 ~a~~~~~~L~~~G~~~v~~l~gG~~~w~  134 (153)
                      ++..++..|...||+ |+.|.||+.+|.
T Consensus        68 rs~~aa~~L~~~G~~-v~~l~GG~~~W~   94 (95)
T cd01534          68 RADMTASWLAQMGWE-VYVLEGGLAAAL   94 (95)
T ss_pred             hHHHHHHHHHHcCCE-EEEecCcHHHhc
Confidence            999999999999999 999999999996

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.

>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein

Probab=99.89  E-value=2.5e-22  Score=142.82  Aligned_cols=115  Identities=20%  Similarity=0.273  Sum_probs=88.4

Q ss_pred             cCCcceeecHHHHHHHHhCC-CeEEecCChh----hhhc---------CCCCCcceeCccccccCCCCCCCChHHHHHHH
Q 031752           24 SGAEVITVDVRAAKNLLESG-YGYLDVRTAE----EFKE---------GHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVR   89 (153)
Q Consensus        24 ~~~~~~~i~~~~~~~~~~~~-~~iIDvR~~~----e~~~---------ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~   89 (153)
                      .......++++++.++++++ .+|||||+..    +|..         +|||||  +|+|+...........+.|.+.+.
T Consensus        31 ~~~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGA--v~ip~~~~~~l~~~~~~~~~~~l~  108 (162)
T TIGR03865        31 TLKGARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGS--LWLPNTGYGNLAPAWQAYFRRGLE  108 (162)
T ss_pred             ccCCccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCc--EEecccCCCCCCCchhHHHHHHHH
Confidence            34456889999999999764 8899999865    4544         499999  988853211111111123556665


Q ss_pred             hh--ccCCCeEEEEeCCCc-cHHHHHHHHHHCCccceeeccccHHHHHhCCCce
Q 031752           90 SL--CKEEDRLVVGCQSGA-RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKV  140 (153)
Q Consensus        90 ~~--~~~~~~ivi~c~~g~-~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~  140 (153)
                      +.  .+++++||+||++|. +|..+++.|..+||+||++|+||+.+|+.+|+|+
T Consensus       109 ~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv  162 (162)
T TIGR03865       109 RATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL  162 (162)
T ss_pred             HhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence            54  368999999999886 8999999999999999999999999999999985

Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.

>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily

Probab=99.89  E-value=2.2e-22  Score=134.45  Aligned_cols=99  Identities=27%  Similarity=0.456  Sum_probs=84.2

Q ss_pred             ceeecHHHHHHHHhCC---CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCC
Q 031752           28 VITVDVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQS  104 (153)
Q Consensus        28 ~~~i~~~~~~~~~~~~---~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~  104 (153)
                      ...++++++.+.++.+   .+|||||++.+|..||||||  +|+|..           .+.....+.++++++||+||++
T Consensus         7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA--~~ip~~-----------~l~~~~~~~i~~~~~vvvyc~~   73 (110)
T cd01521           7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGA--INLPHR-----------EICENATAKLDKEKLFVVYCDG   73 (110)
T ss_pred             eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCC--EeCCHH-----------HhhhHhhhcCCCCCeEEEEECC
Confidence            4678999999998753   78999999999999999999  999985           3332222336889999999997


Q ss_pred             Cc--cHHHHHHHHHHCCccceeeccccHHHHHhCCCce
Q 031752          105 GA--RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKV  140 (153)
Q Consensus       105 g~--~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~  140 (153)
                      |.  ++..+++.|...||+ +++|.||+.+|..+|+|+
T Consensus        74 g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~  110 (110)
T cd01521          74 PGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT  110 (110)
T ss_pred             CCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence            74  899999999999996 999999999999999874

This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.

>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2

Probab=99.88  E-value=2.4e-22  Score=132.18  Aligned_cols=93  Identities=27%  Similarity=0.473  Sum_probs=80.0

Q ss_pred             ecHHHHHHHHhCC---CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh--ccCCCeEEEEeCCC
Q 031752           31 VDVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQSG  105 (153)
Q Consensus        31 i~~~~~~~~~~~~---~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivi~c~~g  105 (153)
                      |+++++.++++.+   .++||||++.||..+|||||  +|+|+.           ++.+.+..+  .++++++|+||++|
T Consensus         2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga--~~ip~~-----------~~~~~~~~~~~~~~~~~vv~~c~~g   68 (101)
T cd01528           2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGF--LHLPMS-----------EIPERSKELDSDNPDKDIVVLCHHG   68 (101)
T ss_pred             CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCC--EecCHH-----------HHHHHHHHhcccCCCCeEEEEeCCC
Confidence            6889999998754   78999999999999999999  999985           444433333  14689999999999


Q ss_pred             ccHHHHHHHHHHCCccceeeccccHHHHHhC
Q 031752          106 ARSLHATADLLGAGFKHVSNFGGGHMAWVQN  136 (153)
Q Consensus       106 ~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~  136 (153)
                      .+|..++..|.+.||+++++|.||+.+|.+.
T Consensus        69 ~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~   99 (101)
T cd01528          69 GRSMQVAQWLLRQGFENVYNLQGGIDAWSLE   99 (101)
T ss_pred             chHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence            9999999999999999999999999999753

Subgroup 2 includes uncharacterized putative rhodanese-related domains.

>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=2.6e-22  Score=129.41  Aligned_cols=89  Identities=30%  Similarity=0.545  Sum_probs=79.2

Q ss_pred             ecHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCccHHH
Q 031752           31 VDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLH  110 (153)
Q Consensus        31 i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~~a~~  110 (153)
                      ++++++.++++++.++||+|++.+|..||||||  +|+|..           ++...+.. ++++++||+||++|.++..
T Consensus         1 ~~~~e~~~~~~~~~~iiD~R~~~~~~~~hipgA--~~ip~~-----------~~~~~~~~-~~~~~~vvl~c~~g~~a~~   66 (90)
T cd01524           1 VQWHELDNYRADGVTLIDVRTPQEFEKGHIKGA--INIPLD-----------ELRDRLNE-LPKDKEIIVYCAVGLRGYI   66 (90)
T ss_pred             CCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCC--EeCCHH-----------HHHHHHHh-cCCCCcEEEEcCCChhHHH
Confidence            478899998876788999999999999999999  999985           55555544 4788999999999999999


Q ss_pred             HHHHHHHCCccceeeccccHHHHH
Q 031752          111 ATADLLGAGFKHVSNFGGGHMAWV  134 (153)
Q Consensus       111 ~~~~L~~~G~~~v~~l~gG~~~w~  134 (153)
                      +++.|+..|| ++++|+||+.+|+
T Consensus        67 ~a~~L~~~G~-~v~~l~GG~~~w~   89 (90)
T cd01524          67 AARILTQNGF-KVKNLDGGYKTYS   89 (90)
T ss_pred             HHHHHHHCCC-CEEEecCCHHHhc
Confidence            9999999999 8999999999995

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.

>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=3.8e-22  Score=136.74  Aligned_cols=102  Identities=24%  Similarity=0.364  Sum_probs=79.6

Q ss_pred             ecHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCC----C---------------CCCh---HHHHHH
Q 031752           31 VDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEG----R---------------VKNP---DFLKKV   88 (153)
Q Consensus        31 i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~----~---------------~~~~---~~~~~~   88 (153)
                      |+++++.++++++.+|||||++.||..||||||  +|||+.......    .               +..+   ++.+.+
T Consensus         1 ~s~~el~~~l~~~~~iiDvR~~~e~~~ghIpgA--inip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (128)
T cd01520           1 ITAEDLLALRKADGPLIDVRSPKEFFEGHLPGA--INLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEA   78 (128)
T ss_pred             CCHHHHHHHHhcCCEEEECCCHHHhccCcCCCc--EEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHH
Confidence            688999999987789999999999999999999  999985321000    0               0001   222223


Q ss_pred             Hh-hccCCCeEEEEeC-CCccHHHHHHHHHHCCccceeeccccHHHHHh
Q 031752           89 RS-LCKEEDRLVVGCQ-SGARSLHATADLLGAGFKHVSNFGGGHMAWVQ  135 (153)
Q Consensus        89 ~~-~~~~~~~ivi~c~-~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~  135 (153)
                      .+ -++++++||+||+ +|.+|.++++.|+.+|| +|+.|+||+.+|+.
T Consensus        79 ~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~  126 (128)
T cd01520          79 WEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK  126 (128)
T ss_pred             HHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence            21 2689999999997 68899999999999999 59999999999975

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.

>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=5.8e-22  Score=128.84  Aligned_cols=91  Identities=25%  Similarity=0.404  Sum_probs=80.8

Q ss_pred             eecHHHHHHHHhC--CCeEEecCChhhhhc--CCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCC
Q 031752           30 TVDVRAAKNLLES--GYGYLDVRTAEEFKE--GHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSG  105 (153)
Q Consensus        30 ~i~~~~~~~~~~~--~~~iIDvR~~~e~~~--ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g  105 (153)
                      .++++++.+++++  +.++||||++.+|..  ||||||  +|+|+.           ++.+.+.. ++++++||+||++|
T Consensus         1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga--~~ip~~-----------~~~~~~~~-~~~~~~ivv~c~~g   66 (96)
T cd01444           1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGA--IHLDED-----------SLDDWLGD-LDRDRPVVVYCYHG   66 (96)
T ss_pred             CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCC--eeCCHH-----------HHHHHHhh-cCCCCCEEEEeCCC
Confidence            3688999998876  379999999999999  999999  999995           55555544 48899999999999


Q ss_pred             ccHHHHHHHHHHCCccceeeccccHHHHH
Q 031752          106 ARSLHATADLLGAGFKHVSNFGGGHMAWV  134 (153)
Q Consensus       106 ~~a~~~~~~L~~~G~~~v~~l~gG~~~w~  134 (153)
                      .++..+++.|+..||++|+++.||+.+|.
T Consensus        67 ~~s~~a~~~l~~~G~~~v~~l~gG~~~w~   95 (96)
T cd01444          67 NSSAQLAQALREAGFTDVRSLAGGFEAWR   95 (96)
T ss_pred             ChHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence            99999999999999999999999999995

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.

>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=4.1e-22  Score=135.46  Aligned_cols=108  Identities=24%  Similarity=0.308  Sum_probs=85.1

Q ss_pred             CcceeecHHHHHHHHhC--CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHH--HHhhccCCCeEEEE
Q 031752           26 AEVITVDVRAAKNLLES--GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKK--VRSLCKEEDRLVVG  101 (153)
Q Consensus        26 ~~~~~i~~~~~~~~~~~--~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ivi~  101 (153)
                      .....++++++.+++++  +.+|||||++.||..||||||  +|+|+..+....    .++...  ....++++++|++|
T Consensus         5 ~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpga--i~ip~~~~~~~~----~~~~~~~~~~~~~~~~~~ivv~   78 (122)
T cd01526           5 SPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEA--INIPLSELLSKA----AELKSLQELPLDNDKDSPIYVV   78 (122)
T ss_pred             CcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCC--eEccHHHHhhhh----hhhhhhhhcccccCCCCcEEEE
Confidence            34568999999998875  368999999999999999999  999986332100    011110  01125789999999


Q ss_pred             eCCCccHHHHHHHHHHCCc-cceeeccccHHHHHhCCCc
Q 031752          102 CQSGARSLHATADLLGAGF-KHVSNFGGGHMAWVQNGLK  139 (153)
Q Consensus       102 c~~g~~a~~~~~~L~~~G~-~~v~~l~gG~~~w~~~g~~  139 (153)
                      |++|.++..+++.|++.|| ++|+.+.||+.+|..+..+
T Consensus        79 C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~  117 (122)
T cd01526          79 CRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDP  117 (122)
T ss_pred             CCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHhCc
Confidence            9999999999999999999 7999999999999987443

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.

>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain

Probab=99.87  E-value=5.7e-22  Score=130.34  Aligned_cols=101  Identities=30%  Similarity=0.435  Sum_probs=78.6

Q ss_pred             ecHHHHHHHHhC-CCeEEecCChhhh-hcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCccH
Q 031752           31 VDVRAAKNLLES-GYGYLDVRTAEEF-KEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARS  108 (153)
Q Consensus        31 i~~~~~~~~~~~-~~~iIDvR~~~e~-~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~~a  108 (153)
                      ++++++.+.+++ +.+|||||++.+| ..||||||  +|+|+..+........ .+   ....++++++||+||++|.++
T Consensus         1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga--~~ip~~~~~~~~~~~~-~~---~~~~~~~~~~ivv~c~~g~~s   74 (103)
T cd01447           1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGA--FHAPRGMLEFWADPDS-PY---HKPAFAEDKPFVFYCASGWRS   74 (103)
T ss_pred             CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCc--EEcccchhhhhcCccc-cc---cccCCCCCCeEEEEcCCCCcH
Confidence            578899888875 4789999999998 56999999  9999853311000000 00   011257899999999999999


Q ss_pred             HHHHHHHHHCCccceeeccccHHHHHhCC
Q 031752          109 LHATADLLGAGFKHVSNFGGGHMAWVQNG  137 (153)
Q Consensus       109 ~~~~~~L~~~G~~~v~~l~gG~~~w~~~g  137 (153)
                      ..+++.|...||++|+.|.||+.+|...|
T Consensus        75 ~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g  103 (103)
T cd01447          75 ALAGKTLQDMGLKPVYNIEGGFKDWKEAG  103 (103)
T ss_pred             HHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence            99999999999999999999999998654

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.

>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1

Probab=99.87  E-value=5e-22  Score=134.20  Aligned_cols=102  Identities=27%  Similarity=0.379  Sum_probs=85.9

Q ss_pred             ecHHHHHHHHhC--CCeEEecCChhhhh-cCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCcc
Q 031752           31 VDVRAAKNLLES--GYGYLDVRTAEEFK-EGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGAR  107 (153)
Q Consensus        31 i~~~~~~~~~~~--~~~iIDvR~~~e~~-~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~~  107 (153)
                      |+++++.+++++  +.++||||++.||. .||||||  +|+|...+...  .....+...+.+..+++++||+||++|.+
T Consensus         1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA--~~ip~~~~~~~--~~~~~~~~~l~~~~~~~~~ivv~C~~G~r   76 (117)
T cd01522           1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDA--VHVAWQVYPDM--EINPNFLAELEEKVGKDRPVLLLCRSGNR   76 (117)
T ss_pred             CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCc--eecchhhcccc--ccCHHHHHHHHhhCCCCCeEEEEcCCCcc
Confidence            578999999976  47899999999999 9999999  99998644211  11235666666656789999999999999


Q ss_pred             HHHHHHHHHHCCccceeeccccHHHHHhC
Q 031752          108 SLHATADLLGAGFKHVSNFGGGHMAWVQN  136 (153)
Q Consensus       108 a~~~~~~L~~~G~~~v~~l~gG~~~w~~~  136 (153)
                      |..+++.|...||+|++.+.||+++|+..
T Consensus        77 s~~aa~~L~~~G~~~v~~l~gG~~~~~~~  105 (117)
T cd01522          77 SIAAAEAAAQAGFTNVYNVLEGFEGDLDA  105 (117)
T ss_pred             HHHHHHHHHHCCCCeEEECcCceecCCCC
Confidence            99999999999999999999999999765

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.

>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain

Probab=99.87  E-value=1.2e-21  Score=132.81  Aligned_cols=105  Identities=25%  Similarity=0.278  Sum_probs=87.2

Q ss_pred             ecHHHHHHHHhC-CCeEEecCCh-------hhhhcCCCCCcceeCccccccCC-----CCCCCC-hHHHHHHHhh-ccCC
Q 031752           31 VDVRAAKNLLES-GYGYLDVRTA-------EEFKEGHVDAAKIFNIPYMFNTP-----EGRVKN-PDFLKKVRSL-CKEE   95 (153)
Q Consensus        31 i~~~~~~~~~~~-~~~iIDvR~~-------~e~~~ghi~ga~~i~ip~~~~~~-----~~~~~~-~~~~~~~~~~-~~~~   95 (153)
                      ++++++.+++++ +.+|||+|++       .+|..||||||  +|+|+..+..     .+.+.. .++.+.+... ++++
T Consensus         2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (122)
T cd01448           2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGA--VFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISND   79 (122)
T ss_pred             cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCC--EEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCC
Confidence            688999999876 4789999999       99999999999  9999865522     223333 3566666554 7889


Q ss_pred             CeEEEEeCC-CccHHHHHHHHHHCCccceeeccccHHHHHhCC
Q 031752           96 DRLVVGCQS-GARSLHATADLLGAGFKHVSNFGGGHMAWVQNG  137 (153)
Q Consensus        96 ~~ivi~c~~-g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g  137 (153)
                      ++||+||++ +.++..+++.|+..||++|++|.||+.+|.+.|
T Consensus        80 ~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g  122 (122)
T cd01448          80 DTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG  122 (122)
T ss_pred             CEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence            999999998 589999999999999999999999999998764

TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.

>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4

Probab=99.86  E-value=2.3e-21  Score=135.53  Aligned_cols=98  Identities=26%  Similarity=0.408  Sum_probs=84.3

Q ss_pred             HHHHHhCC--CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCccHHHHHH
Q 031752           36 AKNLLESG--YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATA  113 (153)
Q Consensus        36 ~~~~~~~~--~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~  113 (153)
                      +.+++.++  .+|||||++.+|..||||||  +++|..           .+.+.+.++ +++++||+||.+|.+|..+++
T Consensus         2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgA--i~~~~~-----------~l~~~l~~l-~~~~~vVv~c~~g~~a~~aa~   67 (145)
T cd01535           2 LAAWLGEGGQTAVVDVTASANYVKRHIPGA--WWVLRA-----------QLAQALEKL-PAAERYVLTCGSSLLARFAAA   67 (145)
T ss_pred             hHHHHhCCCCeEEEECCCHHHHHcCCCCCc--eeCCHH-----------HHHHHHHhc-CCCCCEEEEeCCChHHHHHHH
Confidence            34555443  68999999999999999999  998874           666666664 678999999999999999999


Q ss_pred             HHHHCCccceeeccccHHHHHhCCCceecCCCCC
Q 031752          114 DLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKPA  147 (153)
Q Consensus       114 ~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~~  147 (153)
                      .|...||.+|++|.||+.+|...|+|++++.+++
T Consensus        68 ~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~~~~~  101 (145)
T cd01535          68 DLAALTVKPVFVLEGGTAAWIAAGLPVESGETRL  101 (145)
T ss_pred             HHHHcCCcCeEEecCcHHHHHHCCCCcccCCCCC
Confidence            9999999999999999999999999999876544

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.

>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

Probab=99.86  E-value=1.3e-21  Score=131.79  Aligned_cols=103  Identities=27%  Similarity=0.465  Sum_probs=84.0

Q ss_pred             ecHHHHHHHHhCC-CeEEecCChhhhhc-----------CCCCCcceeCccccccCC-CCCCCCh-HHHHHHHhh-ccCC
Q 031752           31 VDVRAAKNLLESG-YGYLDVRTAEEFKE-----------GHVDAAKIFNIPYMFNTP-EGRVKNP-DFLKKVRSL-CKEE   95 (153)
Q Consensus        31 i~~~~~~~~~~~~-~~iIDvR~~~e~~~-----------ghi~ga~~i~ip~~~~~~-~~~~~~~-~~~~~~~~~-~~~~   95 (153)
                      ++++++.++++++ .+|||||++.+|..           ||||||  +|+|+..+.. ...++.+ ++...+... ++++
T Consensus         1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (118)
T cd01449           1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGA--VNIPWTSLLDEDGTFKSPEELRALFAALGITPD   78 (118)
T ss_pred             CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCC--cccChHHhcCCCCCcCCHHHHHHHHHHcCCCCC
Confidence            4688898888754 89999999999987           999999  9999875532 1233333 444555554 6789


Q ss_pred             CeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHh
Q 031752           96 DRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQ  135 (153)
Q Consensus        96 ~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~  135 (153)
                      ++||+||++|.+|.++++.|+.+||++++.|+||+.+|.+
T Consensus        79 ~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~  118 (118)
T cd01449          79 KPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS  118 (118)
T ss_pred             CCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence            9999999999999999999999999999999999999963

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.

>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily

Probab=99.86  E-value=1.7e-21  Score=128.70  Aligned_cols=100  Identities=22%  Similarity=0.369  Sum_probs=77.5

Q ss_pred             ecHHHHHHHHhC---CCeEEecCChhhhhcCCCCCcceeCccccccCC-CCCCCChHHHHHHHhhccCCCeEEEEeCCCc
Q 031752           31 VDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTP-EGRVKNPDFLKKVRSLCKEEDRLVVGCQSGA  106 (153)
Q Consensus        31 i~~~~~~~~~~~---~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~  106 (153)
                      |+++++.+++++   +.+|||||++.+|..||||||  +|+|+..... ...+..-...+++..  .++++||+||.+|.
T Consensus         1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA--~~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~vv~~c~~g~   76 (105)
T cd01525           1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGS--INIPFSSVFLKEGELEQLPTVPRLEN--YKGKIIVIVSHSHK   76 (105)
T ss_pred             CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCC--EeCCHHHhcccccccccccchHHHHh--hcCCeEEEEeCCCc
Confidence            688999999875   368999999999999999999  9999864311 011110000122222  35889999999999


Q ss_pred             cHHHHHHHHHHCCccceeeccccHHHHH
Q 031752          107 RSLHATADLLGAGFKHVSNFGGGHMAWV  134 (153)
Q Consensus       107 ~a~~~~~~L~~~G~~~v~~l~gG~~~w~  134 (153)
                      ++..+++.|...||++|++|.||+.+|+
T Consensus        77 ~s~~~a~~L~~~G~~~v~~l~GG~~a~~  104 (105)
T cd01525          77 HAALFAAFLVKCGVPRVCILDGGINALK  104 (105)
T ss_pred             cHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence            9999999999999999999999999995

Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.86  E-value=2.8e-21  Score=153.90  Aligned_cols=105  Identities=28%  Similarity=0.447  Sum_probs=93.7

Q ss_pred             ceeecHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEEEEeCCCc
Q 031752           28 VITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGA  106 (153)
Q Consensus        28 ~~~i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivi~c~~g~  106 (153)
                      +..++++++.++++++.++||||++.||..||||||  +|+|+.           ++.+.+.+. .+++++||+||++|.
T Consensus         2 v~~is~~el~~~l~~~~~ivDvR~~~e~~~ghIpgA--i~ip~~-----------~l~~~~~~~~~~~~~~IvvyC~~G~   68 (376)
T PRK08762          2 IREISPAEARARAAQGAVLIDVREAHERASGQAEGA--LRIPRG-----------FLELRIETHLPDRDREIVLICASGT   68 (376)
T ss_pred             CceeCHHHHHHHHhCCCEEEECCCHHHHhCCcCCCC--EECCHH-----------HHHHHHhhhcCCCCCeEEEEcCCCc
Confidence            567999999999988889999999999999999999  999985           555555554 478999999999999


Q ss_pred             cHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCC
Q 031752          107 RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREK  145 (153)
Q Consensus       107 ~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~  145 (153)
                      +|..+++.|+..||+||++|+||+.+|++.|+|+++...
T Consensus        69 rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~  107 (376)
T PRK08762         69 RSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERPRL  107 (376)
T ss_pred             HHHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccccC
Confidence            999999999999999999999999999999999886643

>smart00450 RHOD Rhodanese Homology Domain

Probab=99.86  E-value=2.9e-21  Score=125.11  Aligned_cols=95  Identities=34%  Similarity=0.501  Sum_probs=76.6

Q ss_pred             CCeEEecCChhhhhcCCCCCcceeCccccccCCC-CCCCChHHHHHHHhh-ccCCCeEEEEeCCCccHHHHHHHHHHCCc
Q 031752           43 GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPE-GRVKNPDFLKKVRSL-CKEEDRLVVGCQSGARSLHATADLLGAGF  120 (153)
Q Consensus        43 ~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~ivi~c~~g~~a~~~~~~L~~~G~  120 (153)
                      +.+|||||++.+|..+|||||  +|+|....... ......++....... .+++++||+||.+|.++..+++.|...||
T Consensus         4 ~~~ivDvR~~~e~~~~hi~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~   81 (100)
T smart00450        4 KVVLLDVRSPEEYEGGHIPGA--VNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGF   81 (100)
T ss_pred             CEEEEECCCHHHhccCCCCCc--eeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCC
Confidence            478999999999999999999  99998655322 111111333333333 68899999999999999999999999999


Q ss_pred             cceeeccccHHHHHhCCCc
Q 031752          121 KHVSNFGGGHMAWVQNGLK  139 (153)
Q Consensus       121 ~~v~~l~gG~~~w~~~g~~  139 (153)
                      ++|++|.||+.+|.+.+.|
T Consensus        82 ~~v~~l~GG~~~w~~~~~~  100 (100)
T smart00450       82 KNVYLLDGGYKEWSAAGPP  100 (100)
T ss_pred             CceEEecCCHHHHHhcCCC
Confidence            9999999999999988754

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.

>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily

Probab=99.86  E-value=3.5e-21  Score=130.81  Aligned_cols=94  Identities=19%  Similarity=0.302  Sum_probs=78.8

Q ss_pred             eeecHHHHHHHHhC-------CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHh----h-ccCCC
Q 031752           29 ITVDVRAAKNLLES-------GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRS----L-CKEED   96 (153)
Q Consensus        29 ~~i~~~~~~~~~~~-------~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~----~-~~~~~   96 (153)
                      ..|+++++.+++++       +.+|||||++.||..||||||  +|+|..          .++.+.+..    . +++++
T Consensus         2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA--~~ip~~----------~~l~~~~~~~~~~~~~~~~~   69 (121)
T cd01530           2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGA--VNLSTK----------DELEEFFLDKPGVASKKKRR   69 (121)
T ss_pred             CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCC--EeCCcH----------HHHHHHHHHhhcccccCCCC
Confidence            46899999999865       368999999999999999999  999983          123333322    1 57899


Q ss_pred             eEEEEeC-CCccHHHHHHHHHHC------------CccceeeccccHHHHH
Q 031752           97 RLVVGCQ-SGARSLHATADLLGA------------GFKHVSNFGGGHMAWV  134 (153)
Q Consensus        97 ~ivi~c~-~g~~a~~~~~~L~~~------------G~~~v~~l~gG~~~w~  134 (153)
                      +||+||+ +|.||..+++.|+..            ||.+|++|.||+.+|.
T Consensus        70 ~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~  120 (121)
T cd01530          70 VLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF  120 (121)
T ss_pred             EEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence            9999997 999999999999985            9999999999999984

They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).

>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family

Probab=99.85  E-value=4.9e-21  Score=127.27  Aligned_cols=102  Identities=32%  Similarity=0.508  Sum_probs=78.2

Q ss_pred             cHHHHHHHHhC-CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCCh-HHHHHHHhh---ccCCCeEEEEeCCCc
Q 031752           32 DVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNP-DFLKKVRSL---CKEEDRLVVGCQSGA  106 (153)
Q Consensus        32 ~~~~~~~~~~~-~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~ivi~c~~g~  106 (153)
                      |++|+.+.+++ +.+|||||++.+|..||||||  +|+|.....+....... .+.......   ++++++||+||.+|.
T Consensus         1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~   78 (113)
T PF00581_consen    1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGA--VNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW   78 (113)
T ss_dssp             -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTE--EEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC
T ss_pred             CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCC--ccccccccccccccccccccccccccccccccccccceeeeeccc
Confidence            68899999843 489999999999999999999  99999655222222211 222222222   688899999999888


Q ss_pred             cHHHHHHH-----HHHCCccceeeccccHHHHHh
Q 031752          107 RSLHATAD-----LLGAGFKHVSNFGGGHMAWVQ  135 (153)
Q Consensus       107 ~a~~~~~~-----L~~~G~~~v~~l~gG~~~w~~  135 (153)
                      ++..++..     |...||++|++|.||+.+|.+
T Consensus        79 ~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~  112 (113)
T PF00581_consen   79 RSGSAAAARVAWILKKLGFKNVYILDGGFEAWKA  112 (113)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHcCCCCEEEecChHHHHhc
Confidence            87777666     889999999999999999986

; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.84  E-value=2.7e-20  Score=143.09  Aligned_cols=116  Identities=20%  Similarity=0.232  Sum_probs=94.9

Q ss_pred             eeecHHHHHHHHhCC-CeEEecCC----------hhhhhcCCCCCcceeCccccccCC-C----CCCC-ChHHHHHHHhh
Q 031752           29 ITVDVRAAKNLLESG-YGYLDVRT----------AEEFKEGHVDAAKIFNIPYMFNTP-E----GRVK-NPDFLKKVRSL   91 (153)
Q Consensus        29 ~~i~~~~~~~~~~~~-~~iIDvR~----------~~e~~~ghi~ga~~i~ip~~~~~~-~----~~~~-~~~~~~~~~~~   91 (153)
                      ..++++++.+.++++ .+|||+|+          +.+|..||||||  +|+|+..+.. .    ..++ ..+|.+.+.++
T Consensus         5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (281)
T PRK11493          5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGA--VFFDIEALSDHTSPLPHMMPRPETFAVAMREL   82 (281)
T ss_pred             cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCC--EEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHc
Confidence            568999999999764 88999996          788999999999  9998765421 1    1222 23666777776


Q ss_pred             -ccCCCeEEEEeCCCcc-HHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCCC
Q 031752           92 -CKEEDRLVVGCQSGAR-SLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKP  146 (153)
Q Consensus        92 -~~~~~~ivi~c~~g~~-a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~  146 (153)
                       ++++++||+||.++.+ +.++++.|...||++|++|+||+.+|.++|+|+++..+.
T Consensus        83 Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~  139 (281)
T PRK11493         83 GVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAVE  139 (281)
T ss_pred             CCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCCC
Confidence             8999999999997764 678889999999999999999999999999999877543

>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily

Probab=99.83  E-value=8e-21  Score=123.82  Aligned_cols=85  Identities=29%  Similarity=0.455  Sum_probs=69.4

Q ss_pred             CCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCcc
Q 031752           42 SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFK  121 (153)
Q Consensus        42 ~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~  121 (153)
                      .+.+|||||++.+|..||||||  +|+|+..+.+     ..+..+.+.. .+++++||+||++|.++..+++.|+..||+
T Consensus        11 ~~~~iiDvR~~~~~~~~hIpgA--~~ip~~~~~~-----~~~~~~~~~~-~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~   82 (96)
T cd01529          11 PGTALLDVRAEDEYAAGHLPGK--RSIPGAALVL-----RSQELQALEA-PGRATRYVLTCDGSLLARFAAQELLALGGK   82 (96)
T ss_pred             CCeEEEeCCCHHHHcCCCCCCc--EeCCHHHhcC-----CHHHHHHhhc-CCCCCCEEEEeCChHHHHHHHHHHHHcCCC
Confidence            3478999999999999999999  9999854321     1122222222 478899999999999999999999999999


Q ss_pred             ceeeccccHHHHH
Q 031752          122 HVSNFGGGHMAWV  134 (153)
Q Consensus       122 ~v~~l~gG~~~w~  134 (153)
                      ||++|.||+.+|.
T Consensus        83 ~v~~l~GG~~~W~   95 (96)
T cd01529          83 PVALLDGGTSAWV   95 (96)
T ss_pred             CEEEeCCCHHHhc
Confidence            9999999999996

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.

>PRK01415 hypothetical protein; Validated

Probab=99.83  E-value=3.4e-20  Score=139.19  Aligned_cols=100  Identities=17%  Similarity=0.264  Sum_probs=84.3

Q ss_pred             cceeecHHHHHHHHhC-CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh--ccCCCeEEEEeC
Q 031752           27 EVITVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQ  103 (153)
Q Consensus        27 ~~~~i~~~~~~~~~~~-~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivi~c~  103 (153)
                      ....|++.++.+++++ +.++||||++.||..||||||  +|+|...+.        +|.++..+.  ++++++|++||.
T Consensus       110 ~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gA--inip~~~f~--------e~~~~~~~~~~~~k~k~Iv~yCt  179 (247)
T PRK01415        110 KGEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSA--INPNTKTFK--------QFPAWVQQNQELLKGKKIAMVCT  179 (247)
T ss_pred             CccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCC--CCCChHHHh--------hhHHHHhhhhhhcCCCeEEEECC
Confidence            4567999999999985 488999999999999999999  999985221        222222211  578999999999


Q ss_pred             CCccHHHHHHHHHHCCccceeeccccHHHHHhC
Q 031752          104 SGARSLHATADLLGAGFKHVSNFGGGHMAWVQN  136 (153)
Q Consensus       104 ~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~  136 (153)
                      +|.||..++..|.+.||++|+.|.||+.+|.+.
T Consensus       180 gGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~  212 (247)
T PRK01415        180 GGIRCEKSTSLLKSIGYDEVYHLKGGILQYLED  212 (247)
T ss_pred             CChHHHHHHHHHHHcCCCcEEEechHHHHHHHh
Confidence            999999999999999999999999999999875

>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1

Probab=99.83  E-value=3.6e-20  Score=119.95  Aligned_cols=81  Identities=22%  Similarity=0.345  Sum_probs=67.3

Q ss_pred             CCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHH-HHHhhccCCCeEEEEeCCCcc--HHHHHHHHHHC
Q 031752           42 SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLK-KVRSLCKEEDRLVVGCQSGAR--SLHATADLLGA  118 (153)
Q Consensus        42 ~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ivi~c~~g~~--a~~~~~~L~~~  118 (153)
                      ++.+|||||++.+|..+|||||  +|+|..           ++.. ......+++++||+||.+|.+  +..+++.|.+.
T Consensus         9 ~~~~liDvR~~~e~~~~hi~ga--~~ip~~-----------~~~~~~~~~~~~~~~~ivl~c~~G~~~~s~~aa~~L~~~   75 (92)
T cd01532           9 EEIALIDVREEDPFAQSHPLWA--ANLPLS-----------RLELDAWVRIPRRDTPIVVYGEGGGEDLAPRAARRLSEL   75 (92)
T ss_pred             CCeEEEECCCHHHHhhCCcccC--eeCCHH-----------HHHhhhHhhCCCCCCeEEEEeCCCCchHHHHHHHHHHHc
Confidence            3478999999999999999999  999985           3322 222223458899999999876  68999999999


Q ss_pred             CccceeeccccHHHHHh
Q 031752          119 GFKHVSNFGGGHMAWVQ  135 (153)
Q Consensus       119 G~~~v~~l~gG~~~w~~  135 (153)
                      ||++|+++.||+.+|.+
T Consensus        76 G~~~v~~l~GG~~~W~~   92 (92)
T cd01532          76 GYTDVALLEGGLQGWRA   92 (92)
T ss_pred             CccCEEEccCCHHHHcC
Confidence            99999999999999963

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.82  E-value=8.8e-20  Score=152.54  Aligned_cols=115  Identities=16%  Similarity=0.201  Sum_probs=96.9

Q ss_pred             eeecHHHHHHHHhCC-CeEEecCChhhhhcCCCCCcceeCcccccc-----CCCCCCCC-hHHHHHHHhh-ccCCCeEEE
Q 031752           29 ITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFN-----TPEGRVKN-PDFLKKVRSL-CKEEDRLVV  100 (153)
Q Consensus        29 ~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~-----~~~~~~~~-~~~~~~~~~~-~~~~~~ivi  100 (153)
                      ..|+++++.++++++ .+|||||++.+|..||||||  +|+|+...     ...+.++. .+|.+.+.++ ++++++||+
T Consensus         9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGA--v~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVv   86 (610)
T PRK09629          9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGA--RFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVV   86 (610)
T ss_pred             ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCc--EEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Confidence            579999999999864 88999999999999999999  88886432     11233443 3677777777 899999999


Q ss_pred             EeCCC-ccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCC
Q 031752          101 GCQSG-ARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREK  145 (153)
Q Consensus       101 ~c~~g-~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~  145 (153)
                      ||+++ .++.++++.|+.+|+++|++|+||+.+|+.+|+|+++..+
T Consensus        87 Yd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~  132 (610)
T PRK09629         87 YDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVP  132 (610)
T ss_pred             ECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCC
Confidence            99976 4788999999999999999999999999999999987754

>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain

Probab=99.82  E-value=8.4e-20  Score=126.67  Aligned_cols=102  Identities=21%  Similarity=0.325  Sum_probs=83.2

Q ss_pred             ecHHHHHHHHh----C-CCeEEecCCh--------hhhhc------------CCCCCcceeCcccccc-CCCC----CCC
Q 031752           31 VDVRAAKNLLE----S-GYGYLDVRTA--------EEFKE------------GHVDAAKIFNIPYMFN-TPEG----RVK   80 (153)
Q Consensus        31 i~~~~~~~~~~----~-~~~iIDvR~~--------~e~~~------------ghi~ga~~i~ip~~~~-~~~~----~~~   80 (153)
                      ++++++.+.++    + +..|||+|+.        .+|..            ||||||  +++|+..+ .+.+    .++
T Consensus         1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgA--v~~~~~~~~~~~~~~~~~~p   78 (138)
T cd01445           1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGA--SFFDFEECLDEAGFEESMEP   78 (138)
T ss_pred             CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCC--EeeCHHHhhCcCCCCCCCCC
Confidence            57889999887    2 4789999987        88988            999999  99987554 2222    222


Q ss_pred             C-hHHHHHHHhh-ccCCCeEEEEeCC---CccHHHHHHHHHHCCccceeeccccHHHHH
Q 031752           81 N-PDFLKKVRSL-CKEEDRLVVGCQS---GARSLHATADLLGAGFKHVSNFGGGHMAWV  134 (153)
Q Consensus        81 ~-~~~~~~~~~~-~~~~~~ivi~c~~---g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~  134 (153)
                      . .+|.+.+.+. ++++++||+||++   |..+.++++.|+.+|++||++|+||+.+|+
T Consensus        79 ~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~  137 (138)
T cd01445          79 SEAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF  137 (138)
T ss_pred             CHHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence            2 2677777777 8999999999986   678899999999999999999999999996

Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.

>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE

Probab=99.82  E-value=7.3e-20  Score=120.51  Aligned_cols=79  Identities=27%  Similarity=0.481  Sum_probs=69.9

Q ss_pred             CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEEEEeCCCccHHHHHHHHHHCCcc
Q 031752           43 GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGARSLHATADLLGAGFK  121 (153)
Q Consensus        43 ~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~  121 (153)
                      ...+||||++.||..||||||  +|+|+.           ++...+.+. .+++++||+||++|.+|..++..|.+.||+
T Consensus        18 ~~~lIDvR~~~ef~~ghIpgA--inip~~-----------~l~~~l~~~~~~~~~~vvlyC~~G~rS~~aa~~L~~~G~~   84 (101)
T TIGR02981        18 AEHWIDVRIPEQYQQEHIQGA--INIPLK-----------EIKEHIATAVPDKNDTVKLYCNAGRQSGMAKDILLDMGYT   84 (101)
T ss_pred             CCEEEECCCHHHHhcCCCCCC--EECCHH-----------HHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHcCCC
Confidence            467999999999999999999  999996           666666655 467789999999999999999999999999


Q ss_pred             ceeeccccHHHHHh
Q 031752          122 HVSNFGGGHMAWVQ  135 (153)
Q Consensus       122 ~v~~l~gG~~~w~~  135 (153)
                      +++.+ ||+.+|.-
T Consensus        85 ~v~~~-GG~~~~~~   97 (101)
T TIGR02981        85 HAENA-GGIKDIAM   97 (101)
T ss_pred             eEEec-CCHHHhhh
Confidence            99985 99999953

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.82  E-value=1.3e-19  Score=141.51  Aligned_cols=115  Identities=19%  Similarity=0.181  Sum_probs=93.5

Q ss_pred             ceeecHHHHHHHHhCC-CeEEecC--------C-hhhhhcCCCCCcceeCccccccCCC-----CCCC-ChHHHHHHHhh
Q 031752           28 VITVDVRAAKNLLESG-YGYLDVR--------T-AEEFKEGHVDAAKIFNIPYMFNTPE-----GRVK-NPDFLKKVRSL   91 (153)
Q Consensus        28 ~~~i~~~~~~~~~~~~-~~iIDvR--------~-~~e~~~ghi~ga~~i~ip~~~~~~~-----~~~~-~~~~~~~~~~~   91 (153)
                      ...++++++.+.++++ .+|||+|        + ..+|..||||||  +++|+..+...     ..++ ..+|.+.+.++
T Consensus        21 ~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgA--i~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~   98 (320)
T PLN02723         21 EPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGA--LFFDLDGISDRTTDLPHMLPSEEAFAAAVSAL   98 (320)
T ss_pred             CceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCC--eecCHHHhcCCCCCcCCCCCCHHHHHHHHHHc
Confidence            3589999999999754 7899996        3 378999999999  88887554221     1122 24677777777


Q ss_pred             -ccCCCeEEEEeCCCcc-HHHHHHHHHHCCccceeeccccHHHHHhCCCceecCC
Q 031752           92 -CKEEDRLVVGCQSGAR-SLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKARE  144 (153)
Q Consensus        92 -~~~~~~ivi~c~~g~~-a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~  144 (153)
                       ++++++||+||++|.. +.++++.|+.+||++|++|+||+.+|+++|+|+++..
T Consensus        99 Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~  153 (320)
T PLN02723         99 GIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSA  153 (320)
T ss_pred             CCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCC
Confidence             8899999999997764 6788999999999999999999999999999998764

>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily

Probab=99.82  E-value=8.4e-20  Score=122.43  Aligned_cols=97  Identities=23%  Similarity=0.412  Sum_probs=75.2

Q ss_pred             eeecHHHHHHHHhCC---CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh--ccCCCeEEEEeC
Q 031752           29 ITVDVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQ  103 (153)
Q Consensus        29 ~~i~~~~~~~~~~~~---~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivi~c~  103 (153)
                      ..|+++++.+++..+   .++||||++ ||..||||||  +|+|+..+..       . ...+.+.  .+++++||+||.
T Consensus         2 ~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA--~~ip~~~l~~-------~-~~~~~~~~~~~~~~~iv~yC~   70 (113)
T cd01531           2 SYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGS--WHYPSTRFKA-------Q-LNQLVQLLSGSKKDTVVFHCA   70 (113)
T ss_pred             CcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCC--EecCHHHHhh-------C-HHHHHHHHhcCCCCeEEEEee
Confidence            568999999998753   579999999 9999999999  9999962211       1 1122211  257789999998


Q ss_pred             -CCccHHHHHHHHHH--------CCccceeeccccHHHHHhC
Q 031752          104 -SGARSLHATADLLG--------AGFKHVSNFGGGHMAWVQN  136 (153)
Q Consensus       104 -~g~~a~~~~~~L~~--------~G~~~v~~l~gG~~~w~~~  136 (153)
                       ++.|+..++..|.+        .|+.||++|.||+.+|.+.
T Consensus        71 ~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~  112 (113)
T cd01531          71 LSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS  112 (113)
T ss_pred             cCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence             66788888877654        4999999999999999863

Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.

>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.81  E-value=1.5e-19  Score=119.93  Aligned_cols=89  Identities=39%  Similarity=0.541  Sum_probs=76.3

Q ss_pred             CCCeEEecCChhhhhcCCCCC-cceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEEEEeCCCccHHHHHHHHHHCC
Q 031752           42 SGYGYLDVRTAEEFKEGHVDA-AKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGARSLHATADLLGAG  119 (153)
Q Consensus        42 ~~~~iIDvR~~~e~~~ghi~g-a~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivi~c~~g~~a~~~~~~L~~~G  119 (153)
                      ++.++||||++.||..+|||+ +  .++|...+           ....... .++++++++||++|.||..++..|..+|
T Consensus        19 ~~~~liDvR~~~e~~~~~i~~~~--~~ip~~~~-----------~~~~~~~~~~~~~~ivv~C~~G~rS~~aa~~L~~~G   85 (110)
T COG0607          19 EDAVLLDVREPEEYERGHIPGAA--INIPLSEL-----------KAAENLLELPDDDPIVVYCASGVRSAAAAAALKLAG   85 (110)
T ss_pred             CCCEEEeccChhHhhhcCCCcce--eeeecccc-----------hhhhcccccCCCCeEEEEeCCCCChHHHHHHHHHcC
Confidence            358999999999999999999 8  99999633           2211111 3789999999999999999999999999


Q ss_pred             ccceeeccccHHHHHhCCCceecC
Q 031752          120 FKHVSNFGGGHMAWVQNGLKVKAR  143 (153)
Q Consensus       120 ~~~v~~l~gG~~~w~~~g~~~~~~  143 (153)
                      |.+++.+.||+.+|..++.|....
T Consensus        86 ~~~~~~l~gG~~~w~~~~~~~~~~  109 (110)
T COG0607          86 FTNVYNLDGGIDAWKGAGLPLVRG  109 (110)
T ss_pred             CccccccCCcHHHHHhcCCCcccC
Confidence            999999999999999999988654

>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional

Probab=99.81  E-value=1.1e-19  Score=120.20  Aligned_cols=79  Identities=27%  Similarity=0.486  Sum_probs=69.7

Q ss_pred             CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEEEEeCCCccHHHHHHHHHHCCcc
Q 031752           43 GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGARSLHATADLLGAGFK  121 (153)
Q Consensus        43 ~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~  121 (153)
                      +-.+||+|++.||..+|||||  +|+|+.           ++.+.+.+. .+++++||+||++|.+|..+++.|.+.||+
T Consensus        20 ~~~lIDvR~~~ef~~ghIpGA--iniP~~-----------~l~~~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~   86 (104)
T PRK10287         20 AEHWIDVRVPEQYQQEHVQGA--INIPLK-----------EVKERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYT   86 (104)
T ss_pred             CCEEEECCCHHHHhcCCCCcc--EECCHH-----------HHHHHHHhcCCCCCCeEEEEeCCChHHHHHHHHHHHcCCC
Confidence            357999999999999999999  999985           666666665 466788999999999999999999999999


Q ss_pred             ceeeccccHHHHHh
Q 031752          122 HVSNFGGGHMAWVQ  135 (153)
Q Consensus       122 ~v~~l~gG~~~w~~  135 (153)
                      +++. .||+.+|.-
T Consensus        87 ~v~~-~GG~~~~~~   99 (104)
T PRK10287         87 HAEN-AGGLKDIAM   99 (104)
T ss_pred             eEEe-cCCHHHHhh
Confidence            9987 699999964

>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

Probab=99.81  E-value=1.2e-19  Score=115.69  Aligned_cols=85  Identities=38%  Similarity=0.576  Sum_probs=71.1

Q ss_pred             HHHHh-CCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHH-HhhccCCCeEEEEeCCCccHHHHHHH
Q 031752           37 KNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKV-RSLCKEEDRLVVGCQSGARSLHATAD  114 (153)
Q Consensus        37 ~~~~~-~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ivi~c~~g~~a~~~~~~  114 (153)
                      .++++ .+..|||+|++.+|..+|||||  +++|..           ++.... ....+++++||+||++|.++..+++.
T Consensus         3 ~~~~~~~~~~iiD~R~~~~~~~~~i~ga--~~~~~~-----------~~~~~~~~~~~~~~~~vv~~c~~~~~a~~~~~~   69 (89)
T cd00158           3 KELLDDEDAVLLDVREPEEYAAGHIPGA--INIPLS-----------ELEERAALLELDKDKPIVVYCRSGNRSARAAKL   69 (89)
T ss_pred             HHHhcCCCeEEEECCCHHHHhccccCCC--EecchH-----------HHhhHHHhhccCCCCeEEEEeCCCchHHHHHHH
Confidence            34443 3589999999999999999999  999985           333321 22257899999999999999999999


Q ss_pred             HHHCCccceeeccccHHHHH
Q 031752          115 LLGAGFKHVSNFGGGHMAWV  134 (153)
Q Consensus       115 L~~~G~~~v~~l~gG~~~w~  134 (153)
                      |+..||.++++|.||+.+|.
T Consensus        70 l~~~G~~~v~~l~gG~~~w~   89 (89)
T cd00158          70 LRKAGGTNVYNLEGGMLAWK   89 (89)
T ss_pred             HHHhCcccEEEecCChhhcC
Confidence            99999999999999999994

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.80  E-value=2e-19  Score=138.20  Aligned_cols=111  Identities=20%  Similarity=0.313  Sum_probs=88.6

Q ss_pred             ecHHHHHHHHhC-CCeEEecCChhhhh-----------cCCCCCcceeCccccccCCCCCCCCh-HHHHHHHhh-ccCCC
Q 031752           31 VDVRAAKNLLES-GYGYLDVRTAEEFK-----------EGHVDAAKIFNIPYMFNTPEGRVKNP-DFLKKVRSL-CKEED   96 (153)
Q Consensus        31 i~~~~~~~~~~~-~~~iIDvR~~~e~~-----------~ghi~ga~~i~ip~~~~~~~~~~~~~-~~~~~~~~~-~~~~~   96 (153)
                      .+.+++....++ +.+|||+|++.||.           .||||||  +|+|+..+...+.+..+ ++...+.+. +++++
T Consensus       155 ~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA--~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~  232 (281)
T PRK11493        155 VRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGA--LNVPWTELVREGELKTTDELDAIFFGRGVSFDR  232 (281)
T ss_pred             ecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCc--CCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCC
Confidence            344555545544 47899999999995           6999999  99998776444444443 444455544 78899


Q ss_pred             eEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHh-CCCceecC
Q 031752           97 RLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQ-NGLKVKAR  143 (153)
Q Consensus        97 ~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~-~g~~~~~~  143 (153)
                      +||+||++|.+|..++..|..+||+||++|+||+..|.. .++|++++
T Consensus       233 ~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~  280 (281)
T PRK11493        233 PIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA  280 (281)
T ss_pred             CEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence            999999999999999999999999999999999999998 68998865

>PRK05320 rhodanese superfamily protein; Provisional

Probab=99.80  E-value=2.4e-19  Score=135.94  Aligned_cols=101  Identities=24%  Similarity=0.333  Sum_probs=83.1

Q ss_pred             CcceeecHHHHHHHHhCC-------CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh--ccCCC
Q 031752           26 AEVITVDVRAAKNLLESG-------YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEED   96 (153)
Q Consensus        26 ~~~~~i~~~~~~~~~~~~-------~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~   96 (153)
                      .....+++.++.++++++       .++||||++.||..||||||  +|+|...+.        ++..++.+.  ..+++
T Consensus       107 ~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GA--iniPl~~f~--------~~~~~l~~~~~~~kdk  176 (257)
T PRK05320        107 GRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGA--LDYRIDKFT--------EFPEALAAHRADLAGK  176 (257)
T ss_pred             CcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCC--EeCChhHhh--------hhHHHHHhhhhhcCCC
Confidence            345789999999988652       68999999999999999999  999995221        222223222  12789


Q ss_pred             eEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHhC
Q 031752           97 RLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQN  136 (153)
Q Consensus        97 ~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~  136 (153)
                      +|++||.+|.|+..++..|++.||+||+.|.||+.+|.+.
T Consensus       177 ~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~  216 (257)
T PRK05320        177 TVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE  216 (257)
T ss_pred             eEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence            9999999999999999999999999999999999999874

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.80  E-value=3.6e-19  Score=139.06  Aligned_cols=112  Identities=17%  Similarity=0.312  Sum_probs=91.3

Q ss_pred             ecHHHHHHHHhC-CCeEEecCChhhh-----------hcCCCCCcceeCcccccc-CCCCCCCCh-HHHHHHHhh-ccCC
Q 031752           31 VDVRAAKNLLES-GYGYLDVRTAEEF-----------KEGHVDAAKIFNIPYMFN-TPEGRVKNP-DFLKKVRSL-CKEE   95 (153)
Q Consensus        31 i~~~~~~~~~~~-~~~iIDvR~~~e~-----------~~ghi~ga~~i~ip~~~~-~~~~~~~~~-~~~~~~~~~-~~~~   95 (153)
                      ++.+++.+.+++ +..|||+|++.+|           ..||||||  +|+|+..+ ...+.+... ++.+.+.+. ++++
T Consensus       192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgA--vnip~~~~~~~~~~~~~~~el~~~~~~~gi~~~  269 (320)
T PLN02723        192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGS--KCVPFPQMLDSSQTLLPAEELKKRFEQEGISLD  269 (320)
T ss_pred             ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCC--cccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCC
Confidence            678888888865 4789999999888           45999999  99998655 333444443 555555555 7899


Q ss_pred             CeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHhC-CCceecCC
Q 031752           96 DRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQN-GLKVKARE  144 (153)
Q Consensus        96 ~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~-g~~~~~~~  144 (153)
                      ++||+||++|.+|..++..|+.+||+||++|+||+.+|... ..|++++.
T Consensus       270 ~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~~~  319 (320)
T PLN02723        270 SPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVATST  319 (320)
T ss_pred             CCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccCCC
Confidence            99999999999999999999999999999999999999986 67877653

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=99.80  E-value=3.3e-19  Score=138.73  Aligned_cols=100  Identities=23%  Similarity=0.368  Sum_probs=83.9

Q ss_pred             cceeecHHHHHHHHhCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHh-h-ccCCCeEEEEeC
Q 031752           27 EVITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRS-L-CKEEDRLVVGCQ  103 (153)
Q Consensus        27 ~~~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~ivi~c~  103 (153)
                      ....++++++.++++++ .+|||||++.||..||||||  +|+|+..+.        ++..++.+ + ..++++||+||.
T Consensus       110 ~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GA--i~ip~~~~~--------~~~~~l~~~~~~~kdk~IvvyC~  179 (314)
T PRK00142        110 VGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENA--IEPDIETFR--------EFPPWVEENLDPLKDKKVVMYCT  179 (314)
T ss_pred             CCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCC--EeCCHHHhh--------hhHHHHHHhcCCCCcCeEEEECC
Confidence            34679999999988764 89999999999999999999  999985321        23333322 2 458899999999


Q ss_pred             CCccHHHHHHHHHHCCccceeeccccHHHHHhC
Q 031752          104 SGARSLHATADLLGAGFKHVSNFGGGHMAWVQN  136 (153)
Q Consensus       104 ~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~  136 (153)
                      +|.|+..++..|.+.||++|+.|.||+.+|.+.
T Consensus       180 ~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~  212 (314)
T PRK00142        180 GGIRCEKASAWMKHEGFKEVYQLEGGIITYGED  212 (314)
T ss_pred             CCcHHHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence            999999999999999999999999999999874

>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily

Probab=99.80  E-value=3e-19  Score=119.75  Aligned_cols=92  Identities=20%  Similarity=0.330  Sum_probs=71.2

Q ss_pred             eeecHHHHHHHHhCC-------CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-----ccCCC
Q 031752           29 ITVDVRAAKNLLESG-------YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-----CKEED   96 (153)
Q Consensus        29 ~~i~~~~~~~~~~~~-------~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-----~~~~~   96 (153)
                      ..++++++.++++++       .+|||||++ ||..||||||  +|+|..           ++.+.+.+.     ..+.+
T Consensus         2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgA--i~ip~~-----------~~~~~~~~~~~~~~~~~~~   67 (113)
T cd01443           2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGS--INLPAQ-----------SCYQTLPQVYALFSLAGVK   67 (113)
T ss_pred             cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCc--eecchh-----------HHHHHHHHHHHHhhhcCCC
Confidence            468999999999764       679999999 9999999999  999985           222222222     13567


Q ss_pred             eEEEEeCC-CccHHHHHHHHH----HCCc--cceeeccccHHHHH
Q 031752           97 RLVVGCQS-GARSLHATADLL----GAGF--KHVSNFGGGHMAWV  134 (153)
Q Consensus        97 ~ivi~c~~-g~~a~~~~~~L~----~~G~--~~v~~l~gG~~~w~  134 (153)
                      +||+||.+ |.|+.+++..|.    +.||  .++++|.||+.+|.
T Consensus        68 ~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~  112 (113)
T cd01443          68 LAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY  112 (113)
T ss_pred             EEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence            89999996 578887776654    3475  68999999999995

Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=99.78  E-value=1.1e-18  Score=139.62  Aligned_cols=101  Identities=30%  Similarity=0.404  Sum_probs=84.7

Q ss_pred             CcceeecHHHHHHHHhCC--CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeC
Q 031752           26 AEVITVDVRAAKNLLESG--YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQ  103 (153)
Q Consensus        26 ~~~~~i~~~~~~~~~~~~--~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~  103 (153)
                      .....++++++.++++++  .++||||++.||..+|||||  +|+|+..+..         ...+.. ++++++||+||+
T Consensus       284 ~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGA--inip~~~l~~---------~~~~~~-l~~d~~iVvyC~  351 (392)
T PRK07878        284 AAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGA--QLIPKSEILS---------GEALAK-LPQDRTIVLYCK  351 (392)
T ss_pred             CCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCC--EEcChHHhcc---------hhHHhh-CCCCCcEEEEcC
Confidence            345679999999998754  68999999999999999999  9999852210         012223 588999999999


Q ss_pred             CCccHHHHHHHHHHCCccceeeccccHHHHHhCCC
Q 031752          104 SGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGL  138 (153)
Q Consensus       104 ~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~  138 (153)
                      +|.+|..+++.|++.||++|+.|.||+.+|.++..
T Consensus       352 ~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~  386 (392)
T PRK07878        352 TGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVD  386 (392)
T ss_pred             CChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhcC
Confidence            99999999999999999999999999999988744

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.77  E-value=3.4e-18  Score=143.07  Aligned_cols=114  Identities=18%  Similarity=0.311  Sum_probs=92.8

Q ss_pred             eecHHHHHHHHhCC-CeEEecCChhhhh--------cCCCCCcceeCcccccc-CCCCCCCCh-HHHHHHHhh-ccCCCe
Q 031752           30 TVDVRAAKNLLESG-YGYLDVRTAEEFK--------EGHVDAAKIFNIPYMFN-TPEGRVKNP-DFLKKVRSL-CKEEDR   97 (153)
Q Consensus        30 ~i~~~~~~~~~~~~-~~iIDvR~~~e~~--------~ghi~ga~~i~ip~~~~-~~~~~~~~~-~~~~~~~~~-~~~~~~   97 (153)
                      .++.+++.+.++++ ..|||+|++.+|.        .||||||  +|+|+... ...+.+..+ ++.+.+.+. ++++++
T Consensus       148 ~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGA--vnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~  225 (610)
T PRK09629        148 TATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGA--VNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKE  225 (610)
T ss_pred             cccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCC--eecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCC
Confidence            56788888888654 7899999999994        6999999  99998654 333444444 455555555 789999


Q ss_pred             EEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHhC-CCceecCCC
Q 031752           98 LVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQN-GLKVKAREK  145 (153)
Q Consensus        98 ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~-g~~~~~~~~  145 (153)
                      ||+||++|.+|..+++.|+.+||+||++|+||+.+|.+. +.|++++..
T Consensus       226 VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~~~  274 (610)
T PRK09629        226 VITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVPTV  274 (610)
T ss_pred             EEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccCCC
Confidence            999999999999999999999999999999999999985 778876653

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.75  E-value=7.3e-18  Score=128.83  Aligned_cols=114  Identities=25%  Similarity=0.377  Sum_probs=95.7

Q ss_pred             eeecHHHHHHHHhCC-CeEEecCChhhhhc----------CCCCCcceeCcccccc-CCCCCCCChHHHHHHHhh--ccC
Q 031752           29 ITVDVRAAKNLLESG-YGYLDVRTAEEFKE----------GHVDAAKIFNIPYMFN-TPEGRVKNPDFLKKVRSL--CKE   94 (153)
Q Consensus        29 ~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~----------ghi~ga~~i~ip~~~~-~~~~~~~~~~~~~~~~~~--~~~   94 (153)
                      ...+..+++...+.. .+|||+|++.+|..          ||||||  +|+|+..+ ++...++.++..+.+.+.  +++
T Consensus       156 ~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGA--iNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~  233 (285)
T COG2897         156 AVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGA--INIPWTDLVDDGGLFKSPEEIARLYADAGIDP  233 (285)
T ss_pred             ccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCC--cCcCHHHHhcCCCccCcHHHHHHHHHhcCCCC
Confidence            345556666666554 77899999999988          999999  99999877 555667777777777644  899


Q ss_pred             CCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHhC-CCceecCC
Q 031752           95 EDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQN-GLKVKARE  144 (153)
Q Consensus        95 ~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~-g~~~~~~~  144 (153)
                      ++++|+||++|.+|......|..+|+.+++.|+|++..|.+. +.|++++.
T Consensus       234 ~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g~  284 (285)
T COG2897         234 DKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETGE  284 (285)
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccCC
Confidence            999999999999999999999999999889999999999986 66887764

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=99.75  E-value=5e-18  Score=133.47  Aligned_cols=109  Identities=24%  Similarity=0.353  Sum_probs=83.6

Q ss_pred             cHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCC----------C---------CCCChHHHHHHHhh-
Q 031752           32 DVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPE----------G---------RVKNPDFLKKVRSL-   91 (153)
Q Consensus        32 ~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~----------~---------~~~~~~~~~~~~~~-   91 (153)
                      +..++.+++.++.+|||||++.||..||||||  +|+|+....+.          +         .+..+++.+.+.+. 
T Consensus         4 ~~~~~~~~~~~~~~lIDVRsp~Ef~~ghIpgA--iniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~~   81 (345)
T PRK11784          4 DAQDFRALFLNDTPLIDVRSPIEFAEGHIPGA--INLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEAW   81 (345)
T ss_pred             cHHHHHHHHhCCCEEEECCCHHHHhcCCCCCe--eeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHHH
Confidence            46778777777899999999999999999999  99999643210          0         11222333333322 


Q ss_pred             --c-cCCCeEEEEeC-CCccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecC
Q 031752           92 --C-KEEDRLVVGCQ-SGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAR  143 (153)
Q Consensus        92 --~-~~~~~ivi~c~-~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~  143 (153)
                        . +++++||+||. +|.||..+++.|...|| +++.|.||+.+|++.+.+....
T Consensus        82 ~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~~~~  136 (345)
T PRK11784         82 ADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDTLEE  136 (345)
T ss_pred             HhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHHHhh
Confidence              2 37899999995 78999999999999999 4999999999999988766554

>PRK07411 hypothetical protein; Validated

Probab=99.74  E-value=7.8e-18  Score=134.65  Aligned_cols=104  Identities=29%  Similarity=0.426  Sum_probs=84.1

Q ss_pred             CcceeecHHHHHHHHhCC---CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEe
Q 031752           26 AEVITVDVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGC  102 (153)
Q Consensus        26 ~~~~~i~~~~~~~~~~~~---~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c  102 (153)
                      .....++++++.++++++   .++||||++.||..||||||  +|+|+..+...      ...+.+.+ ++++++||+||
T Consensus       279 ~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGA--iniP~~~l~~~------~~~~~l~~-l~~d~~IVvyC  349 (390)
T PRK07411        279 AEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGS--VLVPLPDIENG------PGVEKVKE-LLNGHRLIAHC  349 (390)
T ss_pred             cccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCC--EEccHHHhhcc------cchHHHhh-cCCCCeEEEEC
Confidence            456789999999988743   58999999999999999999  99998643211      11223333 36889999999


Q ss_pred             CCCccHHHHHHHHHHCCccceeeccccHHHHHhCCCc
Q 031752          103 QSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLK  139 (153)
Q Consensus       103 ~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~  139 (153)
                      .+|.||..+++.|++.||++ +.+.||+.+|.++..|
T Consensus       350 ~~G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p  385 (390)
T PRK07411        350 KMGGRSAKALGILKEAGIEG-TNVKGGITAWSREVDP  385 (390)
T ss_pred             CCCHHHHHHHHHHHHcCCCe-EEecchHHHHHHhcCC
Confidence            99999999999999999985 5799999999887544

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.74  E-value=6.2e-18  Score=133.75  Aligned_cols=95  Identities=29%  Similarity=0.445  Sum_probs=78.7

Q ss_pred             cceeecHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHh-hccCCCeEEEEeCCC
Q 031752           27 EVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRS-LCKEEDRLVVGCQSG  105 (153)
Q Consensus        27 ~~~~i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivi~c~~g  105 (153)
                      ....++++++.+. ..+.+|||||++.||..+|||||  +|+|+.           ++...... .++++++||+||++|
T Consensus       259 ~~~~i~~~~~~~~-~~~~~IIDVR~~~ef~~ghIpgA--inip~~-----------~l~~~~~~~~~~~~~~IvvyC~~G  324 (355)
T PRK05597        259 FGEVLDVPRVSAL-PDGVTLIDVREPSEFAAYSIPGA--HNVPLS-----------AIREGANPPSVSAGDEVVVYCAAG  324 (355)
T ss_pred             cccccCHHHHHhc-cCCCEEEECCCHHHHccCcCCCC--EEeCHH-----------HhhhccccccCCCCCeEEEEcCCC
Confidence            3456778887744 34578999999999999999999  999996           33322221 257889999999999


Q ss_pred             ccHHHHHHHHHHCCccceeeccccHHHHHh
Q 031752          106 ARSLHATADLLGAGFKHVSNFGGGHMAWVQ  135 (153)
Q Consensus       106 ~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~  135 (153)
                      .+|..+++.|.+.||++|+.|.||+.+|.+
T Consensus       325 ~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~  354 (355)
T PRK05597        325 VRSAQAVAILERAGYTGMSSLDGGIEGWLD  354 (355)
T ss_pred             HHHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence            999999999999999999999999999975

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.74  E-value=4e-17  Score=124.77  Aligned_cols=122  Identities=21%  Similarity=0.242  Sum_probs=97.3

Q ss_pred             CCcceeecHHHHHHHHhC------CCeEEecCCh--hhhhcCCCCCcceeCcccccc--CC---CCCCCC-hHHHHHHHh
Q 031752           25 GAEVITVDVRAAKNLLES------GYGYLDVRTA--EEFKEGHVDAAKIFNIPYMFN--TP---EGRVKN-PDFLKKVRS   90 (153)
Q Consensus        25 ~~~~~~i~~~~~~~~~~~------~~~iIDvR~~--~e~~~ghi~ga~~i~ip~~~~--~~---~~~~~~-~~~~~~~~~   90 (153)
                      +.....++++.+.+.+++      +..+++++..  .+|..+|||||  ++++....  .+   ...++. +.|.+.+.+
T Consensus         7 ~~~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGA--v~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~   84 (285)
T COG2897           7 MSSEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGA--VFFDWEADLSDPVPLPHMLPSPEQFAKLLGE   84 (285)
T ss_pred             cCcceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCC--EecCHHHhhcCCCCCCCCCCCHHHHHHHHHH
Confidence            445678999999998874      2455555554  89999999999  77776554  22   234444 477778888


Q ss_pred             h-ccCCCeEEEEeC-CCccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCCCCC
Q 031752           91 L-CKEEDRLVVGCQ-SGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKPAD  148 (153)
Q Consensus        91 ~-~~~~~~ivi~c~-~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~~~  148 (153)
                      + |+.+++||+|.+ ++..|.+++|.|+.+|++||++|+||+++|+++|+|+++..++..
T Consensus        85 ~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~  144 (285)
T COG2897          85 LGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPEPP  144 (285)
T ss_pred             cCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCCCC
Confidence            8 999999999997 445789999999999999999999999999999999998665544

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=99.73  E-value=9.4e-18  Score=130.26  Aligned_cols=98  Identities=24%  Similarity=0.378  Sum_probs=73.6

Q ss_pred             CCeEEecCChhhhhcCCCCCcceeCccccccCCCCC-------------------CCCh---HHHHHHHhhccCCCeEEE
Q 031752           43 GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGR-------------------VKNP---DFLKKVRSLCKEEDRLVV  100 (153)
Q Consensus        43 ~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~-------------------~~~~---~~~~~~~~~~~~~~~ivi  100 (153)
                      ...|||||++.||..||||||  +|+|+....+...                   +..+   ++.+.+....++++.||+
T Consensus         2 ~~~liDVRsp~Ef~~ghipgA--iniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvv   79 (311)
T TIGR03167         2 FDPLIDVRSPAEFAEGHLPGA--INLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLL   79 (311)
T ss_pred             CCEEEECCCHHHHhcCCCcCC--EecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEE
Confidence            357999999999999999999  9999964321100                   0011   222233223455666999


Q ss_pred             EeC-CCccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecC
Q 031752          101 GCQ-SGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAR  143 (153)
Q Consensus       101 ~c~-~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~  143 (153)
                      ||. +|.||..+++.|..+|| +++.+.||+.+|+..+.+....
T Consensus        80 yC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~~  122 (311)
T TIGR03167        80 YCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLEE  122 (311)
T ss_pred             EECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhhc
Confidence            996 78899999999999999 5999999999999988776654

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase

Probab=99.70  E-value=1.2e-16  Score=109.93  Aligned_cols=102  Identities=22%  Similarity=0.187  Sum_probs=75.6

Q ss_pred             ecHHHHHHHHhC---CCeEEecCChhhhhcCCCCCcceeCccccccC----CCC------CCCChHHHHHHHhhccCCCe
Q 031752           31 VDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNT----PEG------RVKNPDFLKKVRSLCKEEDR   97 (153)
Q Consensus        31 i~~~~~~~~~~~---~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~----~~~------~~~~~~~~~~~~~~~~~~~~   97 (153)
                      |+++++.+++++   +.+|||||++.+|..+|||||  +++|.....    +.+      .+..++..+.+...  ++++
T Consensus         2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~a--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~   77 (132)
T cd01446           2 IDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGA--VNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRRG--ESLA   77 (132)
T ss_pred             cCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCc--EecChHHHHHHhhcccchhhhhhcCCHHHHHHHhcC--CCCe
Confidence            789999999974   378999999999999999999  888886431    001      12222333333332  6889


Q ss_pred             EEEEeCCCcc---------HHHHHHHHHH--CCccceeeccccHHHHHhC
Q 031752           98 LVVGCQSGAR---------SLHATADLLG--AGFKHVSNFGGGHMAWVQN  136 (153)
Q Consensus        98 ivi~c~~g~~---------a~~~~~~L~~--~G~~~v~~l~gG~~~w~~~  136 (153)
                      ||+||+++.+         +..+++.|..  .|+.+|++|.||+.+|.+.
T Consensus        78 VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~  127 (132)
T cd01446          78 VVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE  127 (132)
T ss_pred             EEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence            9999997764         6667777777  4778899999999999763

This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=99.65  E-value=3.4e-16  Score=124.33  Aligned_cols=94  Identities=26%  Similarity=0.331  Sum_probs=74.0

Q ss_pred             eeecHHHHHHHHhCC-CeEEecCChhhhhcCCCC---CcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCC
Q 031752           29 ITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVD---AAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQS  104 (153)
Q Consensus        29 ~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~ghi~---ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~  104 (153)
                      .+++++++.++++++ .++||||++.||..+|||   ||  +|||...+...     .++...+.. +++ ++||+||.+
T Consensus       271 ~~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gA--inIPl~~l~~~-----~~~~~~l~~-~~~-~~Ivv~C~s  341 (370)
T PRK05600        271 ARTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGAS--LKLPLSAITDD-----ADILHALSP-IDG-DNVVVYCAS  341 (370)
T ss_pred             cccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCcc--EeCcHHHhhcc-----hhhhhhccc-cCC-CcEEEECCC
Confidence            368899999998765 789999999999999998   58  99999633110     011122222 233 499999999


Q ss_pred             CccHHHHHHHHHHCCccc-eeeccccHH
Q 031752          105 GARSLHATADLLGAGFKH-VSNFGGGHM  131 (153)
Q Consensus       105 g~~a~~~~~~L~~~G~~~-v~~l~gG~~  131 (153)
                      |.||..++..|++.||++ |+.|.||+.
T Consensus       342 G~RS~~Aa~~L~~~G~~~~v~~l~GG~~  369 (370)
T PRK05600        342 GIRSADFIEKYSHLGHELTLHNLPGGVN  369 (370)
T ss_pred             ChhHHHHHHHHHHcCCCCceEEeccccC
Confidence            999999999999999996 999999975

>COG1054 Predicted sulfurtransferase [General function prediction only]

Probab=99.51  E-value=2.8e-14  Score=108.28  Aligned_cols=99  Identities=22%  Similarity=0.318  Sum_probs=83.6

Q ss_pred             ceeecHHHHHHHHhCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh--ccCCCeEEEEeCC
Q 031752           28 VITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQS  104 (153)
Q Consensus        28 ~~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivi~c~~  104 (153)
                      -..++|+++.+++.++ .++||+|+..||.-||+.||  ++.+...+      .  +|.+++.+.  ..++++|+.||.+
T Consensus       112 G~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gA--v~p~~~tF------r--efP~~v~~~~~~~~~KkVvmyCTG  181 (308)
T COG1054         112 GTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGA--VEPDIETF------R--EFPAWVEENLDLLKDKKVVMYCTG  181 (308)
T ss_pred             cCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCc--cCCChhhh------h--hhHHHHHHHHHhccCCcEEEEcCC
Confidence            4679999999999875 89999999999999999999  88777422      1  555555544  4578899999999


Q ss_pred             CccHHHHHHHHHHCCccceeeccccHHHHHhC
Q 031752          105 GARSLHATADLLGAGFKHVSNFGGGHMAWVQN  136 (153)
Q Consensus       105 g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~  136 (153)
                      |.|...+..+|...||++||-|+||+-.+-+.
T Consensus       182 GIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e~  213 (308)
T COG1054         182 GIRCEKASAWMKENGFKEVYHLEGGILKYLED  213 (308)
T ss_pred             ceeehhhHHHHHHhcchhhhcccchHHHHhhh
Confidence            99999999999999999999999999876553

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional

Probab=99.51  E-value=5.3e-14  Score=115.45  Aligned_cols=79  Identities=15%  Similarity=0.273  Sum_probs=67.0

Q ss_pred             HHHHHhCCCeEEecCChhhhhcCCCCC----cceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCccHHHH
Q 031752           36 AKNLLESGYGYLDVRTAEEFKEGHVDA----AKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHA  111 (153)
Q Consensus        36 ~~~~~~~~~~iIDvR~~~e~~~ghi~g----a~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~~a~~~  111 (153)
                      ..+.+..+.++||||++.||..+||||    |  +|+|+.           ++...+.. +++++++++||++|.+|..+
T Consensus       400 ~~~~~~~~~~lIDVR~~~E~~~~hI~g~~~~a--~niP~~-----------~l~~~~~~-l~~~~~iivyC~~G~rS~~a  465 (482)
T PRK01269        400 TVSELPPDDVIIDIRSPDEQEDKPLKLEGVEV--KSLPFY-----------KLSTQFGD-LDQSKTYLLYCDRGVMSRLQ  465 (482)
T ss_pred             HHHhcCCCCEEEECCCHHHHhcCCCCCCCceE--EECCHH-----------HHHHHHhh-cCCCCeEEEECCCCHHHHHH
Confidence            334444568999999999999999999    9  999996           55555544 47889999999999999999


Q ss_pred             HHHHHHCCccceeeccc
Q 031752          112 TADLLGAGFKHVSNFGG  128 (153)
Q Consensus       112 ~~~L~~~G~~~v~~l~g  128 (153)
                      +..|...||+||+.|.+
T Consensus       466 a~~L~~~G~~nv~~y~~  482 (482)
T PRK01269        466 ALYLREQGFSNVKVYRP  482 (482)
T ss_pred             HHHHHHcCCccEEecCC
Confidence            99999999999998753

>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.40  E-value=7.6e-13  Score=101.85  Aligned_cols=100  Identities=20%  Similarity=0.346  Sum_probs=77.9

Q ss_pred             cCCcceeecHHHHHHHHhCC-------CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh---c-
Q 031752           24 SGAEVITVDVRAAKNLLESG-------YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL---C-   92 (153)
Q Consensus        24 ~~~~~~~i~~~~~~~~~~~~-------~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~---~-   92 (153)
                      ....+..|+++.++.+++..       ++|||+|-+.||.+|||+||  +|++..           ++...+.-.   . 
T Consensus       151 k~~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkga--vnl~~~-----------~~~~~~f~~~~~~~  217 (325)
T KOG3772|consen  151 KSQDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGA--VNLYSK-----------ELLQDFFLLKDGVP  217 (325)
T ss_pred             ccccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccc--eecccH-----------hhhhhhhccccccc
Confidence            45668899999999999742       46899999999999999999  999985           222222211   1 


Q ss_pred             --cCCCeEEEEeC-CCccHHHHHHHHHH------------CCccceeeccccHHHHHhC
Q 031752           93 --KEEDRLVVGCQ-SGARSLHATADLLG------------AGFKHVSNFGGGHMAWVQN  136 (153)
Q Consensus        93 --~~~~~ivi~c~-~g~~a~~~~~~L~~------------~G~~~v~~l~gG~~~w~~~  136 (153)
                        .....+|+||. +..|+..+|+.|+.            +-|..+|+|+|||..|-..
T Consensus       218 ~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~  276 (325)
T KOG3772|consen  218 SGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN  276 (325)
T ss_pred             cccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence              12346899999 77799999999984            3577899999999998765

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=99.40  E-value=4.7e-12  Score=95.77  Aligned_cols=118  Identities=21%  Similarity=0.243  Sum_probs=91.7

Q ss_pred             eeecHHHHHHHHhCC-CeEEecC---------ChhhhhcCCCCCcceeCcccccc---CCCCCCCC-hHHHHHHHhh-cc
Q 031752           29 ITVDVRAAKNLLESG-YGYLDVR---------TAEEFKEGHVDAAKIFNIPYMFN---TPEGRVKN-PDFLKKVRSL-CK   93 (153)
Q Consensus        29 ~~i~~~~~~~~~~~~-~~iIDvR---------~~~e~~~ghi~ga~~i~ip~~~~---~~~~~~~~-~~~~~~~~~~-~~   93 (153)
                      ..++++.+.+.+.+. ..|||..         ...||...|||||.++++....+   .....++. ..|.+....+ ++
T Consensus         5 ~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~   84 (286)
T KOG1529|consen    5 SIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVD   84 (286)
T ss_pred             cccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCCC
Confidence            346778888888764 7889984         46677889999994444443222   22233444 4677788877 99


Q ss_pred             CCCeEEEEeC--CCc-cHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCCC
Q 031752           94 EEDRLVVGCQ--SGA-RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKP  146 (153)
Q Consensus        94 ~~~~ivi~c~--~g~-~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~  146 (153)
                      .++.+|||.+  .|. .|++++|.++..|+++|+.|.||+.+|+..|+|+++...+
T Consensus        85 n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~~  140 (286)
T KOG1529|consen   85 NGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKVE  140 (286)
T ss_pred             CCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcccccccc
Confidence            9999999998  665 5889999999999999999999999999999999988853

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=99.27  E-value=9e-12  Score=96.46  Aligned_cols=100  Identities=29%  Similarity=0.310  Sum_probs=79.8

Q ss_pred             ceeecHHHHHHHHhCC--CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEEEEeCC
Q 031752           28 VITVDVRAAKNLLESG--YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQS  104 (153)
Q Consensus        28 ~~~i~~~~~~~~~~~~--~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivi~c~~  104 (153)
                      ..++++.+++++++++  .+++|||+..+|+.-|+|.|  +|||+.......      - +..... -...++|+++|..
T Consensus       316 ~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~a--vNIPL~~l~~~~------~-~~~~~~~~~~~~~I~ViCrr  386 (427)
T KOG2017|consen  316 DERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEA--VNIPLKELRSRS------G-KKLQGDLNTESKDIFVICRR  386 (427)
T ss_pred             hhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccc--cccchhhhhhhh------h-hhhcccccccCCCEEEEeCC
Confidence            4689999999999874  78999999999999999999  999996332111      1 122222 3456779999999


Q ss_pred             CccHHHHHHHHHHCCc-cceeeccccHHHHHhC
Q 031752          105 GARSLHATADLLGAGF-KHVSNFGGGHMAWVQN  136 (153)
Q Consensus       105 g~~a~~~~~~L~~~G~-~~v~~l~gG~~~w~~~  136 (153)
                      |..|+++++.|++... .+|..+.||+.+|...
T Consensus       387 GNdSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~  419 (427)
T KOG2017|consen  387 GNDSQRAVRILREKFPDSSVRDVIGGLKAWAAK  419 (427)
T ss_pred             CCchHHHHHHHHhhCCchhhhhhhhHHHHHHHh
Confidence            9999999999998655 4677999999999875

>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]

Probab=98.94  E-value=3.5e-09  Score=81.37  Aligned_cols=101  Identities=22%  Similarity=0.282  Sum_probs=78.3

Q ss_pred             CCcceeecHHHHHHHHhCC-------CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCC
Q 031752           25 GAEVITVDVRAAKNLLESG-------YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEED   96 (153)
Q Consensus        25 ~~~~~~i~~~~~~~~~~~~-------~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~   96 (153)
                      ....++|+++.++++++..       .+|||+|=+.||.+|||-.|  +||--.          .++....... +.-..
T Consensus       238 ~Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIina--VNi~s~----------~~l~~~F~hkplThp~  305 (427)
T COG5105         238 SDSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINA--VNISST----------KKLGLLFRHKPLTHPR  305 (427)
T ss_pred             ccchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeee--eecchH----------HHHHHHHHhccccCce
Confidence            4447899999999999743       46999999999999999999  998773          2333333222 23356


Q ss_pred             eEEEEeC-CCccHHHHHHHHHHC------------CccceeeccccHHHHHhCC
Q 031752           97 RLVVGCQ-SGARSLHATADLLGA------------GFKHVSNFGGGHMAWVQNG  137 (153)
Q Consensus        97 ~ivi~c~-~g~~a~~~~~~L~~~------------G~~~v~~l~gG~~~w~~~g  137 (153)
                      .+|++|. +..|+...|+.|+.+            =|..|++|+||+..+..+-
T Consensus       306 aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~n~  359 (427)
T COG5105         306 ALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSNY  359 (427)
T ss_pred             eEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhhcC
Confidence            7999999 778999999999854            2678999999999887653

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=98.93  E-value=3.7e-09  Score=80.21  Aligned_cols=89  Identities=25%  Similarity=0.482  Sum_probs=74.3

Q ss_pred             CeEEecCChhhhh-----------cCCCCCcceeCcccccc-CCCCCCC-ChHHHHHHHhh-ccCCCeEEEEeCCCccHH
Q 031752           44 YGYLDVRTAEEFK-----------EGHVDAAKIFNIPYMFN-TPEGRVK-NPDFLKKVRSL-CKEEDRLVVGCQSGARSL  109 (153)
Q Consensus        44 ~~iIDvR~~~e~~-----------~ghi~ga~~i~ip~~~~-~~~~~~~-~~~~~~~~~~~-~~~~~~ivi~c~~g~~a~  109 (153)
                      ...||.|+..+|.           .||||||  +|+|+... .+.+... ..++.....+. +..++++++-|+.|..+.
T Consensus       173 ~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa--~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa~  250 (286)
T KOG1529|consen  173 FQYLDARSKGRFDGTEPEPRSGATGGHIPGA--INFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISAS  250 (286)
T ss_pred             ceeeeccccccccccCCCCcccCcCccCCCc--ccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhHH
Confidence            6899999988883           5899999  99999877 5555444 33555555555 778999999999999999


Q ss_pred             HHHHHHHHCCccceeeccccHHHHHh
Q 031752          110 HATADLLGAGFKHVSNFGGGHMAWVQ  135 (153)
Q Consensus       110 ~~~~~L~~~G~~~v~~l~gG~~~w~~  135 (153)
                      ..+-.|...| .++.+|+|++..|..
T Consensus       251 ~i~~al~r~g-~~~~lYdGS~~Ew~~  275 (286)
T KOG1529|consen  251 IIALALERSG-PDAKLYDGSWTEWAL  275 (286)
T ss_pred             HHHHHHHhcC-CCcceecccHHHHhh
Confidence            9999999999 889999999999975

>TIGR01244 conserved hypothetical protein TIGR01244

Probab=97.88  E-value=0.00013  Score=50.23  Aligned_cols=105  Identities=15%  Similarity=0.153  Sum_probs=63.2

Q ss_pred             ceeecHHHHHHHHhCC-CeEEecCChhhhhcC----------CCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCC
Q 031752           28 VITVDVRAAKNLLESG-YGYLDVRTAEEFKEG----------HVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEE   95 (153)
Q Consensus        28 ~~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~g----------hi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~   95 (153)
                      ...++++++..+-+-+ ..|||.|+..|....          .-+|..++++|+...    .+ .++-...+.+. -..+
T Consensus        12 s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~----~~-~~~~v~~f~~~~~~~~   86 (135)
T TIGR01244        12 SPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAG----DI-TPDDVETFRAAIGAAE   86 (135)
T ss_pred             cCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCC----CC-CHHHHHHHHHHHHhCC
Confidence            3568889998776667 689999998764321          124677888887532    12 22223333332 2346


Q ss_pred             CeEEEEeCCCccHHHHHHH-HHHCCccceeeccccHHHHHhCCCcee
Q 031752           96 DRLVVGCQSGARSLHATAD-LLGAGFKHVSNFGGGHMAWVQNGLKVK  141 (153)
Q Consensus        96 ~~ivi~c~~g~~a~~~~~~-L~~~G~~~v~~l~gG~~~w~~~g~~~~  141 (153)
                      ++|++||.+|.|+..++.. +...|.+.-.++.-+    ++.|+.++
T Consensus        87 ~pvL~HC~sG~Rt~~l~al~~~~~g~~~~~i~~~~----~~~G~~~~  129 (135)
T TIGR01244        87 GPVLAYCRSGTRSSLLWGFRQAAEGVPVEEIVRRA----QAAGYDLS  129 (135)
T ss_pred             CCEEEEcCCChHHHHHHHHHHHHcCCCHHHHHHHH----HHcCCCcc
Confidence            8999999999997765443 344565433333322    44555554

No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.

>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function

Probab=97.63  E-value=0.00026  Score=47.19  Aligned_cols=79  Identities=14%  Similarity=0.133  Sum_probs=41.5

Q ss_pred             eeecHHHHHHHHhCC-CeEEecCChhhhhc----------CCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCC
Q 031752           29 ITVDVRAAKNLLESG-YGYLDVRTAEEFKE----------GHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEED   96 (153)
Q Consensus        29 ~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~----------ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~   96 (153)
                      ..++++++.++-+.+ ..||+.|+..|-..          ..--|-.++++|...    +.+. .+-.+.+.+. -..++
T Consensus        13 ~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~----~~~~-~~~v~~f~~~l~~~~~   87 (110)
T PF04273_consen   13 GQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDG----GAIT-EEDVEAFADALESLPK   87 (110)
T ss_dssp             CS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----T----TT---HHHHHHHHHHHHTTTT
T ss_pred             CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCC----CCCC-HHHHHHHHHHHHhCCC
Confidence            468999999888888 68999998765311          111244578888752    1222 2333333332 23467


Q ss_pred             eEEEEeCCCccHHHHH
Q 031752           97 RLVVGCQSGARSLHAT  112 (153)
Q Consensus        97 ~ivi~c~~g~~a~~~~  112 (153)
                      ||++||.+|.|+...+
T Consensus        88 Pvl~hC~sG~Ra~~l~  103 (110)
T PF04273_consen   88 PVLAHCRSGTRASALW  103 (110)
T ss_dssp             SEEEE-SCSHHHHHHH
T ss_pred             CEEEECCCChhHHHHH
Confidence            9999999999975543

; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.

>COG2603 Predicted ATPase [General function prediction only]

Probab=97.51  E-value=0.00024  Score=54.54  Aligned_cols=99  Identities=24%  Similarity=0.299  Sum_probs=64.3

Q ss_pred             HHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccC-------CCCC-CC-----------ChHHHHHHHh---
Q 031752           33 VRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNT-------PEGR-VK-----------NPDFLKKVRS---   90 (153)
Q Consensus        33 ~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~-------~~~~-~~-----------~~~~~~~~~~---   90 (153)
                      .++...++-+...+||||.+.||..|+.|++  +|+|.....       .+.. ..           ..+....+..   
T Consensus         5 ~q~~~~~~~~~~~lid~rap~ef~~g~~~ia--~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask   82 (334)
T COG2603           5 EQDYRALLLADTPLIDVRAPIEFENGAMPIA--INLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASK   82 (334)
T ss_pred             HHHHHHHHhcCCceeeccchHHHhcccchhh--hccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            3444555556678999999999999999999  999986441       1111 00           0011111111   


Q ss_pred             hccCCCeEEEEeC-CCccHHHHHHHH-HHCCccceeeccccHHHHH
Q 031752           91 LCKEEDRLVVGCQ-SGARSLHATADL-LGAGFKHVSNFGGGHMAWV  134 (153)
Q Consensus        91 ~~~~~~~ivi~c~-~g~~a~~~~~~L-~~~G~~~v~~l~gG~~~w~  134 (153)
                      ....+.++-++|. +|.++...+.+| ...|++ +.-+.||+.+.+
T Consensus        83 ~f~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalr  127 (334)
T COG2603          83 AFQEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALR  127 (334)
T ss_pred             HHHHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence            1234566666799 556899999999 678877 566778987754

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=96.87  E-value=0.00014  Score=56.93  Aligned_cols=85  Identities=8%  Similarity=0.026  Sum_probs=61.6

Q ss_pred             eeecHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccC--CCeEEEEeCC--
Q 031752           29 ITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKE--EDRLVVGCQS--  104 (153)
Q Consensus        29 ~~i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ivi~c~~--  104 (153)
                      +.-+++++.+.+.+...++|+|....|..+||+|+  +++|..           .+..++.++.+.  .+++++.-..  
T Consensus        14 ~i~~~~~~~~~l~~~~~~~d~rg~i~~a~egIngt--is~~~~-----------~~~~~~~~l~~~~~~~~i~l~~~~~~   80 (314)
T PRK00142         14 PIEDPEAFRDEHLALCKSLGLKGRILVAEEGINGT--VSGTIE-----------QTEAYMAWLKADPRFADIRFKISEDD   80 (314)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCeeEEEEcCCCceEE--EEecHH-----------HHHHHHHHHhhCcCCCCceEEecccc
Confidence            34567788887777777899999999999999999  999985           677777777433  5666665443  


Q ss_pred             CccH----HHHHHHHHHCCcc-ceeec
Q 031752          105 GARS----LHATADLLGAGFK-HVSNF  126 (153)
Q Consensus       105 g~~a----~~~~~~L~~~G~~-~v~~l  126 (153)
                      +...    .++...|...|++ ++..+
T Consensus        81 ~~~f~~l~~~~~~eLv~~G~d~~v~~~  107 (314)
T PRK00142         81 GHAFPRLSVKVRKEIVALGLDDDIDPL  107 (314)
T ss_pred             CCCcccceeeeeeeeeecCCCCCCCcc
Confidence            2222    5667778888985 66433

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=96.84  E-value=0.00039  Score=57.86  Aligned_cols=97  Identities=20%  Similarity=0.241  Sum_probs=68.4

Q ss_pred             CCcceeecHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh----ccCCCeEEE
Q 031752           25 GAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL----CKEEDRLVV  100 (153)
Q Consensus        25 ~~~~~~i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ivi  100 (153)
                      ....++|+++++..+  ..+.++|.|...||.++|++++  +|+|+.  ..      +.-.+++...    ...++.+++
T Consensus       618 se~~prmsAedl~~~--~~l~v~d~r~~~ef~r~~~s~s--~nip~~--~~------ea~l~~~~~l~~~~~~~~~~~v~  685 (725)
T KOG1093|consen  618 SEHCPRISAEDLIWL--KMLYVLDTRQESEFQREHFSDS--INIPFN--NH------EADLDWLRFLPGIVCSEGKKCVV  685 (725)
T ss_pred             hhcCccccHHHHHHH--HHHHHHhHHHHHHHHHhhcccc--ccCCcc--ch------HHHHHHhhcchHhHHhhCCeEEE
Confidence            344677888887666  4478899999999999999999  999995  10      1112222221    345676777


Q ss_pred             EeCCCccHHHHHHHHHHCCccceeeccccHHHH
Q 031752          101 GCQSGARSLHATADLLGAGFKHVSNFGGGHMAW  133 (153)
Q Consensus       101 ~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w  133 (153)
                      +......+.+....+..+-+....++++|+++.
T Consensus       686 ~~~~~K~~~e~~~~~~~mk~p~~cil~~~~~~~  718 (725)
T KOG1093|consen  686 VGKNDKHAAERLTELYVMKVPRICILHDGFNNI  718 (725)
T ss_pred             eccchHHHHHHhhHHHHhcccHHHHHHHHHhhc
Confidence            765656677777777777788888999998843

>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases

Probab=96.50  E-value=0.008  Score=40.84  Aligned_cols=79  Identities=15%  Similarity=0.209  Sum_probs=46.2

Q ss_pred             hCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCC--hHHHHHHHhhccCCCeEEEEeCCCc-cHHHH-HHHH
Q 031752           41 ESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN--PDFLKKVRSLCKEEDRLVVGCQSGA-RSLHA-TADL  115 (153)
Q Consensus        41 ~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ivi~c~~g~-~a~~~-~~~L  115 (153)
                      +.+ ..|||+++..+....+.+|-.+.++|+.++.. ..+..  +.+.+.+......+++|+|+|..|. |+..+ +.+|
T Consensus        25 ~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l  103 (139)
T cd00127          25 KLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPS-QDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYL  103 (139)
T ss_pred             HcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCC-CChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHHHH
Confidence            345 68999999887633444555678888865431 11110  1223334433456789999999885 76533 4344


Q ss_pred             -HHCCc
Q 031752          116 -LGAGF  120 (153)
Q Consensus       116 -~~~G~  120 (153)
                       ...|+
T Consensus       104 ~~~~~~  109 (139)
T cd00127         104 MKTLGL  109 (139)
T ss_pred             HHHcCC
Confidence             34443

Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.

>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B

Probab=96.34  E-value=0.023  Score=40.13  Aligned_cols=97  Identities=18%  Similarity=0.253  Sum_probs=45.9

Q ss_pred             CcceeecHHHHHHHHhCC-CeEEecCChhhhhc---CCCCCcceeCccccccCCCC--CCC-------------------
Q 031752           26 AEVITVDVRAAKNLLESG-YGYLDVRTAEEFKE---GHVDAAKIFNIPYMFNTPEG--RVK-------------------   80 (153)
Q Consensus        26 ~~~~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~---ghi~ga~~i~ip~~~~~~~~--~~~-------------------   80 (153)
                      .....+|.++...+.+-+ ..|||.|++.|...   ..++|...+++|........  .+.                   
T Consensus        25 ~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~  104 (164)
T PF13350_consen   25 GNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYRE  104 (164)
T ss_dssp             S--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHH
T ss_pred             CCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHH
Confidence            345668888887776545 68999999999876   45678888888875442110  000                   


Q ss_pred             -----ChHHHHHHHhhccCCCeEEEEeCCCc-cHH-HHHHHHHHCCccc
Q 031752           81 -----NPDFLKKVRSLCKEEDRLVVGCQSGA-RSL-HATADLLGAGFKH  122 (153)
Q Consensus        81 -----~~~~~~~~~~~~~~~~~ivi~c~~g~-~a~-~~~~~L~~~G~~~  122 (153)
                           .+.+.+.+..+.+...+++++|..|. |.- .++-.|..+|.+.
T Consensus       105 ~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~lGV~~  153 (164)
T PF13350_consen  105 MLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSLLGVPD  153 (164)
T ss_dssp             GGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHTT--H
T ss_pred             HHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHHcCCCH
Confidence                 11222222222334479999999886 544 4555566788754

>PLN02727 NAD kinase

Probab=95.83  E-value=0.05  Score=48.18  Aligned_cols=84  Identities=18%  Similarity=0.167  Sum_probs=55.3

Q ss_pred             ceeecHHHHHHHHhCC-CeEEecCChhhhhcCCC----------CCcceeCccccccCCCCCCCChHHHHHHHhhc-c-C
Q 031752           28 VITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHV----------DAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLC-K-E   94 (153)
Q Consensus        28 ~~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~ghi----------~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~-~-~   94 (153)
                      ...++++++.++.+.+ ..||+.|+..|- .+..          .|-.++++|...    .....++..+.+.+.+ + .
T Consensus       266 sgQpspe~la~LA~~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~----~~apt~EqVe~fa~~l~~sl  340 (986)
T PLN02727        266 GGQVTEEGLKWLLEKGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEV----RTAPSAEQVEKFASLVSDSS  340 (986)
T ss_pred             eCCCCHHHHHHHHHCCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCC----CCCCCHHHHHHHHHHHHhhc
Confidence            4678999998888888 689999997772 2222          244578888731    1222234444444443 2 5


Q ss_pred             CCeEEEEeCCCcc--HHHHHHHHH
Q 031752           95 EDRLVVGCQSGAR--SLHATADLL  116 (153)
Q Consensus        95 ~~~ivi~c~~g~~--a~~~~~~L~  116 (153)
                      .+||++||.+|.+  +..++.+|.
T Consensus       341 pkPVLvHCKSGarRAGamvA~yl~  364 (986)
T PLN02727        341 KKPIYLHSKEGVWRTSAMVSRWKQ  364 (986)
T ss_pred             CCCEEEECCCCCchHHHHHHHHHH
Confidence            8999999999984  345566665

>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]

Probab=95.28  E-value=0.065  Score=43.92  Aligned_cols=84  Identities=26%  Similarity=0.301  Sum_probs=52.2

Q ss_pred             CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-------cc-----CCCeEEEEeCCCcc----
Q 031752           44 YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-------CK-----EEDRLVVGCQSGAR----  107 (153)
Q Consensus        44 ~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-------~~-----~~~~ivi~c~~g~~----  107 (153)
                      ..+||+|+..+|..||+..|  .|.......+.    ..+|...+..+       +.     .+..+.++ ++|..    
T Consensus       327 FFiVDcRpaeqynaGHlsta--FhlDc~lmlqe----P~~Fa~av~sLl~aqrqtie~~s~aggeHlcfm-GsGr~EED~  399 (669)
T KOG3636|consen  327 FFIVDCRPAEQYNAGHLSTA--FHLDCVLMLQE----PEKFAIAVNSLLCAQRQTIERDSNAGGEHLCFM-GSGRDEEDN  399 (669)
T ss_pred             EEEEeccchhhcccccchhh--hcccHHHHhcC----HHHHHHHHHHHHHHHHHhhhccccCCcceEEEe-ccCcchHHH
Confidence            46899999999999999988  77765322111    11454433332       22     23455555 34432    


Q ss_pred             -HHHHHHHHHHCCccceeeccccHHHHH
Q 031752          108 -SLHATADLLGAGFKHVSNFGGGHMAWV  134 (153)
Q Consensus       108 -a~~~~~~L~~~G~~~v~~l~gG~~~w~  134 (153)
                       --++...+.+.|-..|.++.||+....
T Consensus       400 YmnMviA~FlQKnk~yVS~~~GGy~~lh  427 (669)
T KOG3636|consen  400 YMNMVIAMFLQKNKLYVSFVQGGYKKLH  427 (669)
T ss_pred             HHHHHHHHHHhcCceEEEEecchHHHHH
Confidence             224445555667677999999998755

>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]

Probab=94.33  E-value=0.028  Score=43.04  Aligned_cols=101  Identities=16%  Similarity=0.147  Sum_probs=55.3

Q ss_pred             eecHHHHHHHHhC-CCeEEecCChhhhhcCCCCCcceeCcccccc--CCCCC------CCChHHHHHHHhhccCCCeEEE
Q 031752           30 TVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFN--TPEGR------VKNPDFLKKVRSLCKEEDRLVV  100 (153)
Q Consensus        30 ~i~~~~~~~~~~~-~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~ivi  100 (153)
                      .++++++...+.. +.+++|+|+    +..||.+|+.+.+|--..  ...+.      +++....+..... =+...+|.
T Consensus         5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~-c~~v~vil   79 (343)
T KOG1717|consen    5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPAR-CGTVTVIL   79 (343)
T ss_pred             HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCcccccccccc-CCcceeee
Confidence            4567778777764 488999999    567888883344443111  01111      1111111110000 12356888


Q ss_pred             EeCCC--cc----HH----HHHHHHHHCCccceeeccccHHHHHhC
Q 031752          101 GCQSG--AR----SL----HATADLLGAGFKHVSNFGGGHMAWVQN  136 (153)
Q Consensus       101 ~c~~g--~~----a~----~~~~~L~~~G~~~v~~l~gG~~~w~~~  136 (153)
                      |+.+.  +.    +.    ...+.++..|+. ++.|.|||..+..+
T Consensus        80 yD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~~-a~yL~ggF~~fq~e  124 (343)
T KOG1717|consen   80 YDESSAEWEEETGAESVLGLLLKKLKDEGCS-ARYLSGGFSKFQAE  124 (343)
T ss_pred             cccccccccccchhhhHHHHHHHHHHhcCcc-hhhhhcccchhhhh
Confidence            87752  11    11    122456677887 89999999887764

>smart00195 DSPc Dual specificity phosphatase, catalytic domain

Probab=93.79  E-value=0.33  Score=32.90  Aligned_cols=80  Identities=21%  Similarity=0.299  Sum_probs=43.9

Q ss_pred             HHhCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCC--hHHHHHHHhhccCCCeEEEEeCCCc-cHHH-HHH
Q 031752           39 LLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN--PDFLKKVRSLCKEEDRLVVGCQSGA-RSLH-ATA  113 (153)
Q Consensus        39 ~~~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ivi~c~~g~-~a~~-~~~  113 (153)
                      +.+.+ ..||+++.+.+..  .-++-.++++|..+.. ...+..  +...+.+......+++|+++|..|. |+.. ++.
T Consensus        22 l~~~gi~~Vi~l~~~~~~~--~~~~~~~~~ipi~D~~-~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~   98 (138)
T smart00195       22 LKKLGITHVINVTNEVPNL--NKKGFTYLGVPILDNT-ETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIA   98 (138)
T ss_pred             HHHcCCCEEEEccCCCCCC--CCCCCEEEEEECCCCC-CCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHH
Confidence            33445 6889998865432  2344467888875321 111110  1122233333567899999999885 7654 344


Q ss_pred             HH-HHCCcc
Q 031752          114 DL-LGAGFK  121 (153)
Q Consensus       114 ~L-~~~G~~  121 (153)
                      +| ...|++
T Consensus        99 yl~~~~~~~  107 (138)
T smart00195       99 YLMKYRNLS  107 (138)
T ss_pred             HHHHHhCCC
Confidence            44 446654

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=92.69  E-value=0.4  Score=37.70  Aligned_cols=67  Identities=13%  Similarity=0.139  Sum_probs=45.3

Q ss_pred             ceeecHHHHHHHHhC-CCeEEecCChhhhhc---CCCC-CcceeCccccccCCCCCCCChHHHHHHHhh---ccCCCeEE
Q 031752           28 VITVDVRAAKNLLES-GYGYLDVRTAEEFKE---GHVD-AAKIFNIPYMFNTPEGRVKNPDFLKKVRSL---CKEEDRLV   99 (153)
Q Consensus        28 ~~~i~~~~~~~~~~~-~~~iIDvR~~~e~~~---ghi~-ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iv   99 (153)
                      ...+...++.+.+.+ +..|||+|+..+|..   ||++ +.  .  |-          +..|...+...   .+++++|+
T Consensus       135 ~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~~~~--q--ps----------q~~fe~~L~~~l~~~~~~~~i~  200 (311)
T TIGR03167       135 MTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALGLGP--Q--PS----------QKRFENALAEALRRLDPGRPIF  200 (311)
T ss_pred             CCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCCCCC--C--Cc----------hHHHHHHHHHHHHhCCCCceEE
Confidence            456777788887765 478999999999988   8888 43  1  21          12444443332   47778888


Q ss_pred             EEeCCCccH
Q 031752          100 VGCQSGARS  108 (153)
Q Consensus       100 i~c~~g~~a  108 (153)
                      +-|.+...+
T Consensus       201 ~e~es~~ig  209 (311)
T TIGR03167       201 VEDESRRIG  209 (311)
T ss_pred             EEeCchhhc
Confidence            888866543

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.95  E-value=0.91  Score=30.69  Aligned_cols=80  Identities=18%  Similarity=0.218  Sum_probs=49.6

Q ss_pred             ceeecHHHHHHHHhCC-CeEEecCChhhhhc----------CCCCCcceeCccccccCCCCCCCCh---HHHHHHHhhcc
Q 031752           28 VITVDVRAAKNLLESG-YGYLDVRTAEEFKE----------GHVDAAKIFNIPYMFNTPEGRVKNP---DFLKKVRSLCK   93 (153)
Q Consensus        28 ~~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~----------ghi~ga~~i~ip~~~~~~~~~~~~~---~~~~~~~~~~~   93 (153)
                      ...++++++.++-..+ ..||--|+..|-..          ..=.|--+.+||...    ..+...   .|.+.+.   .
T Consensus        13 sgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~----~~iT~~dV~~f~~Al~---e   85 (130)
T COG3453          13 SGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTG----GGITEADVEAFQRALD---E   85 (130)
T ss_pred             cCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCC----CCCCHHHHHHHHHHHH---H
Confidence            4578999998887777 68999998655311          000122245566631    122222   3444444   3


Q ss_pred             CCCeEEEEeCCCccHHHHHHH
Q 031752           94 EEDRLVVGCQSGARSLHATAD  114 (153)
Q Consensus        94 ~~~~ivi~c~~g~~a~~~~~~  114 (153)
                      .+.|++.||.+|.|+...+..
T Consensus        86 aegPVlayCrsGtRs~~ly~~  106 (130)
T COG3453          86 AEGPVLAYCRSGTRSLNLYGL  106 (130)
T ss_pred             hCCCEEeeecCCchHHHHHHH
Confidence            589999999999998765443

>PRK12361 hypothetical protein; Provisional

Probab=90.59  E-value=0.74  Score=38.84  Aligned_cols=84  Identities=19%  Similarity=0.180  Sum_probs=44.8

Q ss_pred             cHHHHHHHHhCC-CeEEecCChhhhhc--CCCCCcceeCccccccCCCCCCCChHHHH---HHHhhccCCCeEEEEeCCC
Q 031752           32 DVRAAKNLLESG-YGYLDVRTAEEFKE--GHVDAAKIFNIPYMFNTPEGRVKNPDFLK---KVRSLCKEEDRLVVGCQSG  105 (153)
Q Consensus        32 ~~~~~~~~~~~~-~~iIDvR~~~e~~~--ghi~ga~~i~ip~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ivi~c~~g  105 (153)
                      ++.++..+.+.+ ..|||+|.+.+...  ..-.+..+.++|..+.... .  ..++.+   .+.+....+++|+++|..|
T Consensus       109 ~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p-~--~~~l~~a~~~i~~~~~~~~~VlVHC~~G  185 (547)
T PRK12361        109 FPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVP-T--LAQLNQAINWIHRQVRANKSVVVHCALG  185 (547)
T ss_pred             CcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCC-c--HHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence            345554444445 68999996433211  1122345678887543211 1  113322   2322245678999999977


Q ss_pred             c-cHH-HHHHHHHHC
Q 031752          106 A-RSL-HATADLLGA  118 (153)
Q Consensus       106 ~-~a~-~~~~~L~~~  118 (153)
                      . ||. .++.+|...
T Consensus       186 ~sRSa~vv~ayLm~~  200 (547)
T PRK12361        186 RGRSVLVLAAYLLCK  200 (547)
T ss_pred             CCcHHHHHHHHHHHh
Confidence            5 655 445566543

>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A

Probab=89.98  E-value=1.1  Score=29.07  Aligned_cols=36  Identities=19%  Similarity=0.219  Sum_probs=28.3

Q ss_pred             HHHHHHHhhccCCCeEEEEeCCCccH-HHHHHHHHHCCcc
Q 031752           83 DFLKKVRSLCKEEDRLVVGCQSGARS-LHATADLLGAGFK  121 (153)
Q Consensus        83 ~~~~~~~~~~~~~~~ivi~c~~g~~a-~~~~~~L~~~G~~  121 (153)
                      ++.+.+.+   .+++++++.+++.++ ...++.|..+|++
T Consensus        21 e~l~~L~~---~g~~~~~lTNns~~s~~~~~~~L~~~Gi~   57 (101)
T PF13344_consen   21 EALDALRE---RGKPVVFLTNNSSRSREEYAKKLKKLGIP   57 (101)
T ss_dssp             HHHHHHHH---TTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred             HHHHHHHH---cCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence            67777765   589999999987766 7889999999986

...

>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species

Probab=89.61  E-value=2.9  Score=29.93  Aligned_cols=82  Identities=18%  Similarity=0.243  Sum_probs=36.1

Q ss_pred             HHHHHHHhCC-CeEEecCChhhhhcCCCC---------CcceeCccccccCCCCCCCCh----HHHHHHHhhccCCCeEE
Q 031752           34 RAAKNLLESG-YGYLDVRTAEEFKEGHVD---------AAKIFNIPYMFNTPEGRVKNP----DFLKKVRSLCKEEDRLV   99 (153)
Q Consensus        34 ~~~~~~~~~~-~~iIDvR~~~e~~~ghi~---------ga~~i~ip~~~~~~~~~~~~~----~~~~~~~~~~~~~~~iv   99 (153)
                      .++.++-..+ ..||=.-+..|...-.+|         |-.++++|+.+.    ..++.    ++.+++...+..+++|+
T Consensus        62 ~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~----~aPd~~~~~~i~~eL~~~L~~g~~V~  137 (168)
T PF05706_consen   62 ADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDG----SAPDFAAAWQILEELAARLENGRKVL  137 (168)
T ss_dssp             HHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TT----S---HHHHHHHHHHHHHHHHTT--EE
T ss_pred             HHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCC----CCCCHHHHHHHHHHHHHHHHcCCEEE
Confidence            3444444444 234445666666554444         334667777433    22211    23333333378899999


Q ss_pred             EEeCCC-ccHHH-HHHHHHHCC
Q 031752          100 VGCQSG-ARSLH-ATADLLGAG  119 (153)
Q Consensus       100 i~c~~g-~~a~~-~~~~L~~~G  119 (153)
                      ++|.+| +|+-. |+..|.++|
T Consensus       138 vHC~GGlGRtGlvAAcLLl~L~  159 (168)
T PF05706_consen  138 VHCRGGLGRTGLVAACLLLELG  159 (168)
T ss_dssp             EE-SSSSSHHHHHHHHHHHHH-
T ss_pred             EECCCCCCHHHHHHHHHHHHHc
Confidence            999977 47654 555565655

The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.

>PTZ00242 protein tyrosine phosphatase; Provisional

Probab=87.83  E-value=3.1  Score=29.54  Aligned_cols=77  Identities=16%  Similarity=0.262  Sum_probs=40.7

Q ss_pred             HHHHHhCC-CeEEecCCh----hhhhcCCCCCcceeCccccccCCCCCCCCh----HHHHHHHhh----ccCCCeEEEEe
Q 031752           36 AKNLLESG-YGYLDVRTA----EEFKEGHVDAAKIFNIPYMFNTPEGRVKNP----DFLKKVRSL----CKEEDRLVVGC  102 (153)
Q Consensus        36 ~~~~~~~~-~~iIDvR~~----~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~ivi~c  102 (153)
                      +..+.+.+ ..||.+..+    ..+...+|   .+.++|+.+.    ..+..    +|.+.+.+.    ..++.+|+|+|
T Consensus        33 l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi---~~~~~p~~D~----~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC  105 (166)
T PTZ00242         33 IKELQRYNVTHLVRVCGPTYDAELLEKNGI---EVHDWPFDDG----APPPKAVIDNWLRLLDQEFAKQSTPPETIAVHC  105 (166)
T ss_pred             HHHHHhCCCeEEEecCCCCCCHHHHHHCCC---EEEecCCCCC----CCCCHHHHHHHHHHHHHHHHhhccCCCeEEEEC
Confidence            33333445 467777432    33443444   3466676322    12222    344444333    24689999999


Q ss_pred             CCC-ccHHH-HHHHHHHCC
Q 031752          103 QSG-ARSLH-ATADLLGAG  119 (153)
Q Consensus       103 ~~g-~~a~~-~~~~L~~~G  119 (153)
                      ..| +|+.. ++.+|.+.|
T Consensus       106 ~aGigRSgt~~a~yL~~~~  124 (166)
T PTZ00242        106 VAGLGRAPILVALALVEYG  124 (166)
T ss_pred             CCCCCHHHHHHHHHHHHhC
Confidence            977 46654 466665544

>PTZ00393 protein tyrosine phosphatase; Provisional

Probab=87.21  E-value=8.5  Score=29.20  Aligned_cols=71  Identities=18%  Similarity=0.348  Sum_probs=40.6

Q ss_pred             CeEEecCCh----hhhhcCCCCCcceeCccccccCCCCCCCChH----HHHHHHhhccCCCeEEEEeCCC-ccHH-HHHH
Q 031752           44 YGYLDVRTA----EEFKEGHVDAAKIFNIPYMFNTPEGRVKNPD----FLKKVRSLCKEEDRLVVGCQSG-ARSL-HATA  113 (153)
Q Consensus        44 ~~iIDvR~~----~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ivi~c~~g-~~a~-~~~~  113 (153)
                      ..||++..+    .++....|   .+.++|+.    ++..+..+    |.+.+...+..+..|+|+|..| +|+. .++.
T Consensus       118 ~~lVrlcE~~Yd~~~~~~~GI---~~~~lpip----Dg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~Aa  190 (241)
T PTZ00393        118 TDLVRTCERTYNDGEITSAGI---NVHELIFP----DGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASI  190 (241)
T ss_pred             CEEEECCCCCCCHHHHHHcCC---eEEEeecC----CCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHH
Confidence            567877542    23333333   44556663    33334334    3333333356788999999966 4655 5567


Q ss_pred             HHHHCCcc
Q 031752          114 DLLGAGFK  121 (153)
Q Consensus       114 ~L~~~G~~  121 (153)
                      +|.+.|++
T Consensus       191 yLI~~Gms  198 (241)
T PTZ00393        191 VLIEFGMD  198 (241)
T ss_pred             HHHHcCCC
Confidence            77777764

>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]

Probab=86.43  E-value=1.3  Score=31.90  Aligned_cols=39  Identities=23%  Similarity=0.356  Sum_probs=23.8

Q ss_pred             HHHHHHHhhccCCCeEEEEeCCCc-cHHHH-H-HHHHHCCcc
Q 031752           83 DFLKKVRSLCKEEDRLVVGCQSGA-RSLHA-T-ADLLGAGFK  121 (153)
Q Consensus        83 ~~~~~~~~~~~~~~~ivi~c~~g~-~a~~~-~-~~L~~~G~~  121 (153)
                      ++.+.+.....++++|+++|..|. |+..+ + +.+...|..
T Consensus        93 ~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~  134 (180)
T COG2453          93 KIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLS  134 (180)
T ss_pred             HHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCC
Confidence            334444444677889999999774 66543 3 344444544

>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity

Probab=86.27  E-value=1.3  Score=29.68  Aligned_cols=77  Identities=17%  Similarity=0.189  Sum_probs=40.6

Q ss_pred             CeEEecCChhhh-hcCCCCCcceeCccccccCCCCCCC-ChHHHHHHHhhccCCCeEEEEeCCCc-cHH-HHHHHHHH-C
Q 031752           44 YGYLDVRTAEEF-KEGHVDAAKIFNIPYMFNTPEGRVK-NPDFLKKVRSLCKEEDRLVVGCQSGA-RSL-HATADLLG-A  118 (153)
Q Consensus        44 ~~iIDvR~~~e~-~~ghi~ga~~i~ip~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivi~c~~g~-~a~-~~~~~L~~-~  118 (153)
                      ..||+++.+.+. ....-++....++|..+........ -+...+.+.....++.+|+|+|..|. ||. .++.+|.. .
T Consensus        20 ~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~   99 (133)
T PF00782_consen   20 THVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLMKKN   99 (133)
T ss_dssp             EEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHHHH
T ss_pred             CEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHHHHHc
Confidence            478999986553 1122223355777765311110000 01233333333567899999999875 655 44555544 5


Q ss_pred             Cc
Q 031752          119 GF  120 (153)
Q Consensus       119 G~  120 (153)
                      |+
T Consensus       100 ~~  101 (133)
T PF00782_consen  100 GM  101 (133)
T ss_dssp             TS
T ss_pred             CC
Confidence            54

Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....

>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional

Probab=85.13  E-value=11  Score=27.88  Aligned_cols=84  Identities=11%  Similarity=0.033  Sum_probs=48.3

Q ss_pred             cCCcceeecHHHHHHHHhCCCeEEecCChhhhhcCCCCCc--ceeCccccccCCCCCCCChHHHHHHHhhccCCCe-EEE
Q 031752           24 SGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAA--KIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDR-LVV  100 (153)
Q Consensus        24 ~~~~~~~i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga--~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ivi  100 (153)
                      .....++|+..+++++-+.+..|+=+|..+-  .+.-.+.  ... -|++   +.+.    +-.+.+.+.+..... -.+
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~L~LiRHGet--~~~~~~~~~sD~-RpLT---erG~----~qA~~lg~~L~~~~~~d~I  104 (201)
T PRK15416         35 SSNGLPRIDNKTLAELAKQHPVVVLFRHAER--CDRSDNQCLSDK-TGIT---VKGT----QDARELGKAFSADIPDYDL  104 (201)
T ss_pred             ccCCCccccHHHHHHHhcCCCEEEEEeCccc--cCccCCCCCCCC-CCCC---HHHH----HHHHHHHHHHhCCCCCCEE
Confidence            6788999999999888888888888897552  0111111  001 2221   1111    112222222222211 267


Q ss_pred             EeCCCccHHHHHHHHHH
Q 031752          101 GCQSGARSLHATADLLG  117 (153)
Q Consensus       101 ~c~~g~~a~~~~~~L~~  117 (153)
                      ||..-.|+.+.++.+..
T Consensus       105 ~sSpa~Ra~qTAe~ia~  121 (201)
T PRK15416        105 YSSNTVRTIQSATWFSA  121 (201)
T ss_pred             EECCCHHHHHHHHHHhc
Confidence            99999999998888865

>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes

Probab=84.70  E-value=3.1  Score=29.53  Aligned_cols=39  Identities=26%  Similarity=0.486  Sum_probs=27.9

Q ss_pred             HHHHhhc--cCCCeEEEEeCCCcc---HHHHHHHHHHCCccceee
Q 031752           86 KKVRSLC--KEEDRLVVGCQSGAR---SLHATADLLGAGFKHVSN  125 (153)
Q Consensus        86 ~~~~~~~--~~~~~ivi~c~~g~~---a~~~~~~L~~~G~~~v~~  125 (153)
                      +.+...+  ++.++|++.|++|..   +-.++++|...|++ |.+
T Consensus        14 ~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v   57 (169)
T PF03853_consen   14 ELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTV   57 (169)
T ss_dssp             HHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred             HHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence            3444445  788999999997754   66889999999998 554

In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....

>COG0062 Uncharacterized conserved protein [Function unknown]

Probab=80.79  E-value=5.7  Score=29.35  Aligned_cols=30  Identities=33%  Similarity=0.533  Sum_probs=24.3

Q ss_pred             CCeEEEEeCCCc---cHHHHHHHHHHCCccceee
Q 031752           95 EDRLVVGCQSGA---RSLHATADLLGAGFKHVSN  125 (153)
Q Consensus        95 ~~~ivi~c~~g~---~a~~~~~~L~~~G~~~v~~  125 (153)
                      ..+++++|.+|.   -+.-+|++|...|++ |.+
T Consensus        49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v   81 (203)
T COG0062          49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTV   81 (203)
T ss_pred             CCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEE
Confidence            568999999665   478999999999987 443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	153
1tq1_A	129	Solution Structure Of At5g66040, A Putative Protein		1e-25

>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From Arabidosis Thaliana Length = 129

Iteration: 1
 Score =  111 bits (278), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/113 (50%), Positives = 72/113 (63%), Gaps = 2/113 (1%)
Query: 30  TVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVR 89
           +V V  A +LL +G+ YLDVRT EEF +GH  A    N+PYM     G  KN DFL++V 
Sbjct: 19  SVSVTVAHDLLLAGHRYLDVRTPEEFSQGH--ACGAINVPYMNRGASGMSKNTDFLEQVS 76
Query: 90  SLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA 142
           S   + D ++VGCQSG RS+ AT DLL AGF  V +  GG+ AW +NGL  KA
Sbjct: 77  SHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTKA 129

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	153
1tq1_A	129	AT5G66040, senescence-associated family protein; C	8e-39
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	3e-22
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	9e-21
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	3e-20
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	4e-20
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	4e-19
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	8e-19
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	2e-18
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	3e-18
1vee_A	134	Proline-rich protein family; hypothetical protein,	3e-18
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	6e-18
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	1e-17
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	7e-17
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	2e-16
2jtq_A	85	Phage shock protein E; solution structure rhodanes	1e-15
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	5e-14
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	5e-04
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	7e-14
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	5e-12
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	1e-07
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	4e-05
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	1e-13
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	8e-13
3r2u_A	466	Metallo-beta-lactamase family protein; structural	2e-12
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	2e-12
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	7e-12
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	9e-11
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	3e-10
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	4e-08
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	2e-06
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	5e-05
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	9e-05
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	1e-04
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	4e-04

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3 Length = 129

 Score =  127 bits (320), Expect = 8e-39
 Identities = 57/113 (50%), Positives = 72/113 (63%), Gaps = 2/113 (1%)

Query: 30  TVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVR 89
           +V V  A +LL +G+ YLDVRT EEF +GH   A   N+PYM     G  KN DFL++V 
Sbjct: 19  SVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAI--NVPYMNRGASGMSKNTDFLEQVS 76

Query: 90  SLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA 142
           S   + D ++VGCQSG RS+ AT DLL AGF  V +  GG+ AW +NGL  KA
Sbjct: 77  SHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTKA 129

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae} Length = 139

 Score = 85.2 bits (211), Expect = 3e-22
 Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 21  CRSSGAEVITVDVRAAKNLLESGYGY---LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEG 77
              + + + +      K ++         +DVR   E+   H+ A+   N+PY  +    
Sbjct: 15  QSKNVSNIQSYSFEDMKRIVGKHDPNVVLVDVREPSEYSIVHIPASI--NVPYRSHPDAF 72

Query: 78  RVKNPDFLKKVRSLCKEEDR-LVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQN 136
            +   +F K++     +  + L+  C SG R   A       G+ + S + G    WV +
Sbjct: 73  ALDPLEFEKQIGIPKPDSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMNDWVSH 132

Query: 137 GLKV 140
           G   
Sbjct: 133 GGDK 136

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A Length = 141

 Score = 81.3 bits (201), Expect = 9e-21
 Identities = 29/115 (25%), Positives = 43/115 (37%), Gaps = 16/115 (13%)

Query: 31  VDVRAAKNLLESGYGY---LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKK 87
            D    K+ LE G      LDVR    + +GH+  A    +P             D + +
Sbjct: 2   SDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAM--AMPI-----------EDLVDR 48

Query: 88  VRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA 142
             S  ++   + V      ++  A   L  AGF+HVS   GG  AW   G   + 
Sbjct: 49  ASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEG 103

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A Length = 106

 Score = 78.8 bits (195), Expect = 3e-20
 Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 19/117 (16%)

Query: 37  KNLLESGYGY---LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCK 93
           K+ LE G      LDVR    + +GH+  A    +P             D + +  S  +
Sbjct: 4   KSRLEWGEPAFTILDVRDRSTYNDGHIMGAM--AMPI-----------EDLVDRASSSLE 50

Query: 94  EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKPADHR 150
           +   + V      ++  A   L  AGF+HVS   GG  AW   G      E    H 
Sbjct: 51  KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPT---ELEHHHH 104

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3 Length = 137

 Score = 79.6 bits (197), Expect = 4e-20
 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 13/127 (10%)

Query: 26  AEVITVDVRAAKNLLESGYGY--LDVRTAEEFKEGHVDAAK-IFNIPYMFNTPEGRVKNP 82
           A+++ +  + A  LL+       +DVR  +E K       K   ++       E  +   
Sbjct: 20  ADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSR--GKLEPLLAKS 77

Query: 83  DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA 142
                       E  +VV C++ AR+  A   L   GFK + N  GG   W++ GL    
Sbjct: 78  GLDP--------EKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLD 129

Query: 143 REKPADH 149
           R     H
Sbjct: 130 RSHHHHH 136

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris} Length = 139

 Score = 77.4 bits (191), Expect = 4e-19
 Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 18/129 (13%)

Query: 26  AEVITVDVRAAKNLLESGYGY---LDVRTAEEF-KEGHVDAAKIFNIPY----MFNTPEG 77
           + + T+    A  L +SG      +D+R   E  ++G +  +  F+        +  P+ 
Sbjct: 19  SSIETLTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGS--FSCTRGMLEFWIDPQS 76

Query: 78  RVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNG 137
               P F        +E+ + V  C  G RS  A       G K V++  GG  AW   G
Sbjct: 77  PYAKPIF--------QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGAWRDAG 128

Query: 138 LKVKAREKP 146
             ++A    
Sbjct: 129 GPIEAWAPK 137

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori} Length = 110

 Score = 75.4 bits (186), Expect = 8e-19
 Identities = 19/106 (17%), Positives = 43/106 (40%), Gaps = 13/106 (12%)

Query: 35  AAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKE 94
           + + +  + +  +DVR  +E++E H+  A    I    N  E         K        
Sbjct: 8   SLEEVNFNDFIVVDVRELDEYEELHLPNAT--LIS--VNDQEKLADFLSQHK-------- 55

Query: 95  EDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKV 140
           + ++++ C++G R+L A   +   G+       G    + + G ++
Sbjct: 56  DKKVLLHCRAGRRALDAAKSMHELGYTPYYL-EGNVYDFEKYGFRM 100

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} Length = 94

 Score = 73.8 bits (182), Expect = 3e-18
 Identities = 23/106 (21%), Positives = 34/106 (32%), Gaps = 16/106 (15%)

Query: 30  TVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVR 89
            V       LLE G   +DVR A+        AA+   +P      +             
Sbjct: 3   KVRPEELPALLEEGVLVVDVRPADRRSTPLPFAAE--WVP--LEKIQKGEHGLP------ 52

Query: 90  SLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQ 135
                   L++ C+ G  S  A   L   G++   +  GG  A  Q
Sbjct: 53  -----RRPLLLVCEKGLLSQVAALYLEAEGYE-AMSLEGGLQALTQ 92

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A Length = 134

 Score = 74.7 bits (183), Expect = 3e-18
 Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 8/131 (6%)

Query: 25  GAEVITVDVRAAKNLLESGYGY--LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNP 82
           G+   +   + A   L +      LD+R   +F++      K      +     G    P
Sbjct: 1   GSSGSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGE-DKP 59

Query: 83  DFLKKVRSLCKE--EDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGG---HMAWVQNG 137
            FLKK+    K+     L +  +    S      +   GFK       G      W+ + 
Sbjct: 60  GFLKKLSLKFKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSS 119

Query: 138 LKVKAREKPAD 148
           L     +K + 
Sbjct: 120 LPWIEPKKTSG 130

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A Length = 108

 Score = 73.4 bits (181), Expect = 6e-18
 Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 15/105 (14%)

Query: 30  TVDVRAAKNLLESGYGYL-DVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKV 88
            ++V  A   L+     L D+R  + F  GH   A   ++    +T    +++ DF   V
Sbjct: 6   CINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAF--HLT--NDTLGAFMRDNDFDTPV 61

Query: 89  RSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAW 133
                     +V C  G  S  A   LL  G+  V +  GG  AW
Sbjct: 62  ----------MVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW 96

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} Length = 100

 Score = 72.2 bits (178), Expect = 1e-17
 Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 17/111 (15%)

Query: 30  TVDVRAAKNLLESGYGY--LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKK 87
           ++ V   K  +        +DVRT +E   G +  A+   IP M                
Sbjct: 3   SITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAE--TIP-M----------NSIPDN 49

Query: 88  VRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGL 138
           +      E    + C++G RS      L   G     N  GG   +   GL
Sbjct: 50  LNYFNDNET-YYIICKAGGRSAQVVQYLEQNGVN-AVNVEGGMDEFGDEGL 98

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} Length = 108

 Score = 70.3 bits (173), Expect = 7e-17
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 16/120 (13%)

Query: 30  TVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVR 89
           +++       +++    LDVR   E   G +  +   NIP             +  +K +
Sbjct: 5   SINAADLYENIKAYT-VLDVREPFELIFGSIANSI--NIPI-----------SELREKWK 50

Query: 90  SLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKPADH 149
            L +++    V C  G RS  A   L   G   + +  GG  +W++ G  V        H
Sbjct: 51  ILERDKK-YAVICAHGNRSAAAVEFLSQLGLN-IVDVEGGIQSWIEEGYPVVLEHHHHHH 108

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis} Length = 148

 Score = 70.1 bits (171), Expect = 2e-16
 Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 9/111 (8%)

Query: 36  AKNLLESGYGY--LDVRTAEEFKEGHVDAAKIFNIPYMFNT--PEGRVKNPDFLKKVRSL 91
           A  +L        +DVR   E++   V          ++          N +FL ++R  
Sbjct: 12  AWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTHNDNFLAELRDR 71

Query: 92  CKE-----EDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNG 137
                   E  ++  C+SG RS+ A      AG     N   G    +   
Sbjct: 72  IPADADQHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFEGHLDAE 122

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A Length = 85

 Score = 66.4 bits (163), Expect = 1e-15
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 12/82 (14%)

Query: 47  LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGA 106
           +DVR  E++++ HV  A   NIP      + R+      K         D + V C +G 
Sbjct: 5   IDVRVPEQYQQEHVQGAI--NIP--LKEVKERIATAVPDK--------NDTVKVYCNAGR 52

Query: 107 RSLHATADLLGAGFKHVSNFGG 128
           +S  A   L   G+ HV N GG
Sbjct: 53  QSGQAKEILSEMGYTHVENAGG 74

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Length = 474

 Score = 67.3 bits (164), Expect = 5e-14
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 14/107 (13%)

Query: 36  AKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEE 95
              L + G   LDVR  +E+  GH+  A   +IP                  +  + ++ 
Sbjct: 382 RGALAQQGLWLLDVRNVDEWAGGHLPQAH--HIPL-----------SKLAAHIHDVPRDG 428

Query: 96  DRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA 142
             + V C++G RS  A + L   G   V N  GG+ AW   G  V+A
Sbjct: 429 S-VCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYEAWRGKGFPVEA 474

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Length = 474

 Score = 38.5 bits (89), Expect = 5e-04
 Identities = 15/98 (15%), Positives = 25/98 (25%), Gaps = 13/98 (13%)

Query: 40  LESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLV 99
              G   LDVR A+ F + H+  +        F T  G +   D              + 
Sbjct: 283 WREGGVVLDVRPADAFAKRHLAGSLNIPWNKSFVTWAGWLLPAD------------RPIH 330

Query: 100 VGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNG 137
           +       +      L   G   V ++           
Sbjct: 331 LLAADA-IAPDVIRALRSIGIDDVVDWTDPAAVDRAAP 367

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 66.7 bits (162), Expect = 7e-14
 Identities = 28/119 (23%), Positives = 40/119 (33%), Gaps = 15/119 (12%)

Query: 35  AAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKE 94
            A  L E G   LD   +  + + H+  A    +                 + +  L   
Sbjct: 384 LADWLGEPGTRVLDFTASANYAKRHIPGAA--WVLR-----------SQLKQALERLGTA 430

Query: 95  EDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA-REKPADHRSD 152
           E R V+ C S   +  A A++     K V    GG  AWV  GL  +      A  R D
Sbjct: 431 E-RYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTEDGESLLASPRID 488

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 61.3 bits (148), Expect = 5e-12
 Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 16/118 (13%)

Query: 24  SGAEVITVDVRAAKNLLESGYGY--LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN 81
           S +++        +  L +      LDVR  + F + H   A   N+P            
Sbjct: 2   SLSQIAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAA--NLPL----------- 48

Query: 82  PDFLKKVRSLCKEED-RLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGL 138
                ++ +     D  + V       +  A   L   G+  V+   GG   W   G 
Sbjct: 49  SRLELEIHARVPRRDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLSGWRNAGG 106

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 48.6 bits (115), Expect = 1e-07
 Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 15/122 (12%)

Query: 29  ITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKV 88
           +  +   A     +    LD R  +E++   +      ++P             + + +V
Sbjct: 132 LAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGI--SVPG-----------AELVLRV 178

Query: 89  RSLCKEEDR-LVVGCQSGARSLHATADLLGAGFKHV-SNFGGGHMAWVQNGLKVKAREKP 146
             L  +    ++V C    RS+  T  LL AG  +  +    G + W   G +++  +  
Sbjct: 179 AELAPDPRTRVIVNCAGRTRSIIGTQSLLNAGIPNPVAALRNGTIGWTLAGQQLEHGQTR 238

Query: 147 AD 148
             
Sbjct: 239 RF 240

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 41.3 bits (96), Expect = 4e-05
 Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 17/117 (14%)

Query: 20  ICRSSGAEVITV-DVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPY--MFNTPE 76
           +   +G E + +  +   ++  +     LDVRT EE++ GH+  ++  + P   +    +
Sbjct: 258 VADRAGVERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSR--STPGGQLVQETD 315

Query: 77  GRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAW 133
                               RLV+    G R+  + + L   G++     G     +
Sbjct: 316 HVASVRG------------ARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSEADF 360

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens} Length = 127

 Score = 62.4 bits (152), Expect = 1e-13
 Identities = 29/119 (24%), Positives = 40/119 (33%), Gaps = 15/119 (12%)

Query: 30  TVDVRAAKNLLESGYGY--LDVRTAEEFKEGHVDAAKIFNIPY-----MFNTPEGRVKNP 82
            V V   K LL+SG  +  LDVR   E     +  A   +IP              +K  
Sbjct: 2   RVSVTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHAL--HIPLKHLERRDAESLKLLKEA 59

Query: 83  DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKH------VSNFGGGHMAWVQ 135
            + +K  +       + V C+ G  S  A   L             V +  GG MAW  
Sbjct: 60  IWEEKQGTQEGAAVPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMAWAA 118

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A Length = 124

 Score = 60.5 bits (147), Expect = 8e-13
 Identities = 29/126 (23%), Positives = 41/126 (32%), Gaps = 21/126 (16%)

Query: 27  EVITVDVRAAKNLLESGYGYLDVRTAE-EFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFL 85
            +    V A        Y  LDVR A  + K+  +  A    +P             D  
Sbjct: 16  YIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAI--AMPA-----------KDLA 62

Query: 86  KKVRSLCKEEDRLVVGCQSGARSLHATA--DLLGAGFKHVSNFGGGHMAWVQNGLKVKAR 143
            ++  L   +   VV   +G  +L  TA   LL AGF+      G    W    L +   
Sbjct: 63  TRIGELDPAKT-YVVYDWTGGTTLGKTALLVLLSAGFE-AYELAGALEGWKGMQLPL--- 117

Query: 144 EKPADH 149
           E    H
Sbjct: 118 EHHHHH 123

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Length = 466

 Score = 62.7 bits (152), Expect = 2e-12
 Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 14/114 (12%)

Query: 20  ICRSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRV 79
                    I      ++++  +    LDVR   E+  GH+  A   ++P+         
Sbjct: 364 AGYQLPQSKIQTRSIHSEDITGNESHILDVRNDNEWNNGHLSQAV--HVPH--------- 412

Query: 80  KNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAW 133
                L+      K +  + V CQSG RS  A   L   G+ ++ N   G+   
Sbjct: 413 --GKLLETDLPFNKNDV-IYVHCQSGIRSSIAIGILEHKGYHNIINVNEGYKDI 463

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A Length = 144

 Score = 59.8 bits (145), Expect = 2e-12
 Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 18/122 (14%)

Query: 22  RSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN 81
           +    E    D+         G   +DVR AE +KE H+  A   +IP            
Sbjct: 12  KKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAI--SIPG----------- 58

Query: 82  PDFLKKVRSLCKEEDRLVV---GCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGL 138
            + + +  +    ++++++      +   +  A A     GF+ V    GG   W +   
Sbjct: 59  -NKINEDTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGFR-VKELIGGIEYWRKENG 116

Query: 139 KV 140
           +V
Sbjct: 117 EV 118

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 61.1 bits (149), Expect = 7e-12
 Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 21/110 (19%)

Query: 27  EVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLK 86
            V TV       ++E+G   +DVR   E K+G +  +   NIP               L 
Sbjct: 487 FVDTVQWHEIDRIVENGGYLIDVREPNELKQGMIKGSI--NIP---------------LD 529

Query: 87  KVRSLCKEEDR---LVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAW 133
           ++R   +E      + + CQ G R   A   L+  G+K V N  GG   +
Sbjct: 530 ELRDRLEEVPVDKDIYITCQLGMRGYVAARMLMEKGYK-VKNVDGGFKLY 578

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1 Length = 152

 Score = 55.7 bits (134), Expect = 9e-11
 Identities = 24/137 (17%), Positives = 41/137 (29%), Gaps = 23/137 (16%)

Query: 23  SSGAEVITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPY-MFNTPEGRVK 80
           +    +  +       L        +DVR  E   +GH+  +   +     F        
Sbjct: 22  AMARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSL--HYASGSF-------- 71

Query: 81  NPDFLKKVRSLCKEEDRLVVGC-QSGARSLHATADLL--------GAGFKHVSNFGGGHM 131
             D +  +    K++D LV     S  R       L+          G K++     G  
Sbjct: 72  -DDKISHLVQNVKDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFN 130

Query: 132 AWVQNGLKV-KAREKPA 147
            W  +G  V +  E P 
Sbjct: 131 GWEASGKPVCRCAEVPC 147

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 56.4 bits (137), Expect = 3e-10
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 21/97 (21%)

Query: 40  LESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDR-- 97
           L      LDVR   E + G ++ A   NIP               + ++R    E  +  
Sbjct: 483 LSEDQLLLDVRNPGELQNGGLEGAV--NIP---------------VDELRDRMHELPKDK 525

Query: 98  -LVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAW 133
            +++  Q G R   A   L+  G++   N  GG+  +
Sbjct: 526 EIIIFSQVGLRGNVAYRQLVNNGYR-ARNLIGGYRTY 561

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile} Length = 134

 Score = 48.2 bits (114), Expect = 4e-08
 Identities = 29/125 (23%), Positives = 43/125 (34%), Gaps = 26/125 (20%)

Query: 32  DVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRV------------ 79
            ++  K L      ++DVRT  E++E H+  A   N+P   N     V            
Sbjct: 6   VIKIEKALKLDKVIFVDVRTEGEYEEDHILNA--INMPLFKNNEHNEVGTIYKMQGKHEA 63

Query: 80  ----------KNPDFLKKVRSLCKEEDRLVVGC-QSGARSLHATADLLGAGFKHVSNFGG 128
                     K  D   +   L    D +V+ C + G RS      L   G   V    G
Sbjct: 64  IQKGFDYVSYKLKDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVN-VYQLEG 122

Query: 129 GHMAW 133
           G+ A+
Sbjct: 123 GYKAY 127

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A Length = 423

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 20/121 (16%)

Query: 29  ITVDVRAAKNLLESGYGYL-DVRTAEEF-----------KEGHVDAAKI-----FNIPYM 71
           + +D+  A+ LL      L  +R+  EF            +G +  A+       +    
Sbjct: 272 LMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHAGSDSTHME 331

Query: 72  FN-TPEGRVKNPDFLKKV--RSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGG 128
               P+G +++ D +  +      K E ++   C +G R+          G+K+VS + G
Sbjct: 332 DFHNPDGTMRSADDITAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDG 391

Query: 129 G 129
           G
Sbjct: 392 G 392

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 6e-07
 Identities = 22/150 (14%), Positives = 46/150 (30%), Gaps = 29/150 (19%)

Query: 13  GLFLLLLICRSSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAA-------KI 65
           G   L     S   E++    +  + +L   Y +L      E ++  +          ++
Sbjct: 63  GTLRLFWTLLSKQEEMVQ---KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 66  FNIPYMFNTPEGRVKNPDFLKKVRS-LC--KEEDRLVV----GCQSGARSLHATADLLGA 118
           +N   +F   +  V       K+R  L   +    +++    G   G   +    D+   
Sbjct: 120 YNDNQVF--AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS--GKTWV--ALDVC-L 172

Query: 119 GFKHVSNFGGGHMAWVQNGLKVKAREKPAD 148
            +K         + W    L +K    P  
Sbjct: 173 SYKVQCKMDFK-IFW----LNLKNCNSPET 197

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X Length = 271

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 14/112 (12%)

Query: 29  ITVDVRAAKNLLESGYGYL-DVRTAEEF--------KEGHVDAAKIFNIPYMFN-TPEGR 78
            T         L +    + D R+ +E+        K GH+  A   N  +     P   
Sbjct: 147 PTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAV--NFEWTAAMDPSRA 204

Query: 79  VKNPDFLKKV--RSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGG 128
           ++    +           +  +V  CQ+  RS          G+  V  + G
Sbjct: 205 LRIRTDIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAG 256

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1 Length = 161

 Score = 40.4 bits (94), Expect = 5e-05
 Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 16/100 (16%)

Query: 47  LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGA 106
           +D R   E++ GH+  A   N+       +  +K P     V +  K    +     S  
Sbjct: 48  IDCRYPYEYEGGHIKGAV--NLHMEEEVEDFLLKKP----IVPTDGKRVIVVFHCEFSSE 101

Query: 107 RSLHATADL----------LGAGFKHVSNFGGGHMAWVQN 136
           R       +              +  +    GG+  +   
Sbjct: 102 RGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMK 141

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2 Length = 285

 Score = 40.3 bits (95), Expect = 9e-05
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 23/118 (19%)

Query: 32  DVRAAKNLLESGYGYL-DVRTAEEF----------------KEGHVDAAKIFNIPYMFN- 73
           DV      ++ G G L DVR+ +E+                + GH+  AK  NIP+    
Sbjct: 152 DVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAK--NIPWAKAV 209

Query: 74  TPEGRVKNPDFLKKV--RSLCKEEDRLVVGCQSGARSLHATADLLG-AGFKHVSNFGG 128
            P+G  K+ + L+ +       ++  +VV C+   RS H+   L    G+ HV N+ G
Sbjct: 210 NPDGTFKSAEELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDG 267

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A* Length = 169

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 12/123 (9%)

Query: 24  SGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPY--MFNTPEGRVKN 81
              E+           L   +  +DVR   ++  GH+      +  Y  +   PE   + 
Sbjct: 34  DPTELHRWMQEGHTTTLREPFQVVDVRG-SDYMGGHIKDGW--HYAYSRLKQDPEYLREL 90

Query: 82  PDFLKKVRSLCKEEDRLVVGCQSG-------ARSLHATADLLGAGFKHVSNFGGGHMAWV 134
              L + ++  +    ++  C          A  L  + D        +    GG   W 
Sbjct: 91  KHRLLEKQADGRGALNVIFHCMLSQQRGPSAAMLLLRSLDTAELSRCRLWVLRGGFSRWQ 150

Query: 135 QNG 137
              
Sbjct: 151 SVY 153

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A Length = 318

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 20/100 (20%)

Query: 47  LDVRTAEEF----------------KEGHVDAAKIFNIPYMFN-TPEGRVKNPDFLKKVR 89
           +DVR+ EE+                + GH+  A   +IP+       GR ++ + L+++ 
Sbjct: 196 IDVRSPEEYTGKRTHMPDYPEEGALRAGHIPTAV--HIPWGKAADESGRFRSREELERLY 253

Query: 90  SLCKEEDRLVVGCQSGARSLHATADLLG-AGFKHVSNFGG 128
                +D+ VV C+ G RS H    L    G   V N+ G
Sbjct: 254 DFINPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDG 293

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	153
3iwh_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.95
1tq1_A	129	AT5G66040, senescence-associated family protein; C	99.95
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	99.95
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	99.94
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.94
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	99.94
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	99.94
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	99.94
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	99.94
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	99.94
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	99.94
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	99.92
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	99.92
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	99.92
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	99.92
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	99.91
1vee_A	134	Proline-rich protein family; hypothetical protein,	99.9
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	99.9
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.89
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	99.89
2jtq_A	85	Phage shock protein E; solution structure rhodanes	99.88
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.88
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.88
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	99.88
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.88
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	99.87
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.87
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.87
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.87
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.87
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.87
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.87
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	99.86
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.86
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.86
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	99.86
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	99.86
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	99.86
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.86
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	99.86
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.86
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.86
4f67_A	265	UPF0176 protein LPG2838; structural genomics, PSI-	99.85
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.85
2ouc_A	142	Dual specificity protein phosphatase 10; rhodanese	99.85
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.84
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.83
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.83
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.83
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	99.83
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.82
1hzm_A	154	Dual specificity protein phosphatase 6; hydrolase;	99.8
3tg1_B	158	Dual specificity protein phosphatase 10; kinase/rh	99.8
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.79
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.79
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.76
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	99.75
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.74
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	99.74
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.73
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.73
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.7
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.68
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.41
2f46_A	156	Hypothetical protein; structural genomics, joint c	98.04
4erc_A	150	Dual specificity protein phosphatase 23; alpha bet	97.06
2img_A	151	Dual specificity protein phosphatase 23; DUSP23, V	96.44
1xri_A	151	AT1G05000; structural genomics, protein structure	95.68
3rgo_A	157	Protein-tyrosine phosphatase mitochondrial 1; phos	95.53
1ywf_A	296	Phosphotyrosine protein phosphatase PTPB; four str	95.37
1zzw_A	149	Dual specificity protein phosphatase 10; MKP, PTP,	95.26
2r0b_A	154	Serine/threonine/tyrosine-interacting protein; str	95.11
1yz4_A	160	DUSP15, dual specificity phosphatase-like 15 isofo	95.06
1wrm_A	165	Dual specificity phosphatase 22; DSP, JNK, hydrola	94.81
2hcm_A	164	Dual specificity protein phosphatase; structural g	94.68
2wgp_A	190	Dual specificity protein phosphatase 14; MKP6, DUS	94.64
2nt2_A	145	Protein phosphatase slingshot homolog 2; alpha/bet	94.44
1fpz_A	212	Cyclin-dependent kinase inhibitor 3; alpha-beta sa	94.04
3ezz_A	144	Dual specificity protein phosphatase 4; alpha/beta	93.93
2esb_A	188	Dual specificity protein phosphatase 18; alpha/bet	93.89
2oud_A	177	Dual specificity protein phosphatase 10; A central	93.23
2e0t_A	151	Dual specificity phosphatase 26; conserved hypothe	93.11
3rz2_A	189	Protein tyrosine phosphatase type IVA 1; tyrosine	93.0
3f81_A	183	Dual specificity protein phosphatase 3; hydrolase,	92.88
3s4o_A	167	Protein tyrosine phosphatase-like protein; structu	92.5
3s4e_A	144	Dual specificity protein phosphatase 19; PTP, prot	92.0
2i6j_A	161	Ssoptp, sulfolobus solfataricus protein tyrosine p	91.42
2g6z_A	211	Dual specificity protein phosphatase 5; alpha/beta	91.17
2hxp_A	155	Dual specificity protein phosphatase 9; human phos	90.69
1rxd_A	159	Protein tyrosine phosphatase type IVA, member 1; p	90.5
1yn9_A	169	BVP, polynucleotide 5'-phosphatase; RNA triphospha	89.91
2q05_A	195	Late protein H1, dual specificity protein phosphat	88.5
2pq5_A	205	Dual specificity protein phosphatase 13; hydrolase	88.11
1v8c_A	168	MOAD related protein; riken structural genomics/pr	88.1
3emu_A	161	Leucine rich repeat and phosphatase domain contain	87.98
2j16_A	182	SDP-1, tyrosine-protein phosphatase YIL113W; hydro	87.75
3cm3_A	176	Late protein H1, dual specificity protein phosphat	86.89
2y96_A	219	Dual specificity phosphatase DUPD1; hydrolase; 2.3	86.65
1ohe_A	348	CDC14B, CDC14B2 phosphatase; protein phosphatase,	86.2
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	86.17
2jgn_A	185	DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp	84.87
2hjv_A	163	ATP-dependent RNA helicase DBPA; parallel alpha-be	82.31
2c46_A	241	MRNA capping enzyme; phosphatase, transferase, hyd	81.62
1t5i_A	172	C_terminal domain of A probable ATP-dependent RNA	80.56

>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A

Probab=99.95  E-value=8.9e-29  Score=162.80  Aligned_cols=99  Identities=29%  Similarity=0.408  Sum_probs=87.4

Q ss_pred             eeecHHHHHHHHhC--CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCc
Q 031752           29 ITVDVRAAKNLLES--GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGA  106 (153)
Q Consensus        29 ~~i~~~~~~~~~~~--~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~  106 (153)
                      .+||++|+.+.+.+  +.+|||||++.||..||||||  +|||+.           +|.+.+.+ ++++++||+||.+|.
T Consensus         2 k~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA--~~ip~~-----------~l~~~~~~-l~~~~~ivv~C~~G~   67 (103)
T 3iwh_A            2 KSITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNA--KLIPMD-----------TIPDNLNS-FNKNEIYYIVCAGGV   67 (103)
T ss_dssp             CEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTC--EECCGG-----------GGGGCGGG-CCTTSEEEEECSSSS
T ss_pred             CCcCHHHHHHHHhCCCCeEEEECCChhHHhcCccCCc--ccCccc-----------chhhhhhh-hcCCCeEEEECCCCH
Confidence            57999999998864  388999999999999999999  999996           44444444 489999999999999


Q ss_pred             cHHHHHHHHHHCCccceeeccccHHHHHhCCCceec
Q 031752          107 RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA  142 (153)
Q Consensus       107 ~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~  142 (153)
                      ||..+++.|.+.||+++ .|.||+.+|.++|+|+++
T Consensus        68 rS~~aa~~L~~~G~~~~-~l~GG~~~W~~~g~pves  102 (103)
T 3iwh_A           68 RSAKVVEYLEANGIDAV-NVEGGMHAWGDEGLEIKS  102 (103)
T ss_dssp             HHHHHHHHHHTTTCEEE-EETTHHHHHCSSSCBCCC
T ss_pred             HHHHHHHHHHHcCCCEE-EecChHHHHHHCCCccee
Confidence            99999999999999865 689999999999999975

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3

Probab=99.95  E-value=4.2e-28  Score=165.45  Aligned_cols=116  Identities=48%  Similarity=0.763  Sum_probs=101.5

Q ss_pred             cCCcceeecHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeC
Q 031752           24 SGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQ  103 (153)
Q Consensus        24 ~~~~~~~i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~  103 (153)
                      .......|+++++.++++++.+|||||++.||..||||||  +|||+..+...+.+..+++.+.+.+.++++++||+||+
T Consensus        13 ~~~~~~~is~~e~~~~l~~~~~lIDvR~~~e~~~ghIpgA--inip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivvyC~   90 (129)
T 1tq1_A           13 ESRVPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGA--INVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQ   90 (129)
T ss_dssp             CSCCCEEEEHHHHHHHHHHTCCEEEESCHHHHHHCCBTTB--EECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEES
T ss_pred             hcCCCcccCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCc--EECcHhhcccccccCCHHHHHHHHhhCCCCCeEEEECC
Confidence            4556789999999999886789999999999999999999  99999665444555555777776665789999999999


Q ss_pred             CCccHHHHHHHHHHCCccceeeccccHHHHHhCCCcee
Q 031752          104 SGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVK  141 (153)
Q Consensus       104 ~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~  141 (153)
                      +|.||..+++.|.+.||+||+.|.||+.+|.++|+|++
T Consensus        91 ~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  128 (129)
T 1tq1_A           91 SGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK  128 (129)
T ss_dssp             SCSHHHHHHHHHHHHHCCSEEEEECCHHHHHHHTCCCC
T ss_pred             CCcHHHHHHHHHHHcCCCCeEEeCCcHHHHHhCCCCCC
Confidence            99999999999999999999999999999999999985

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}

Probab=99.95  E-value=7.7e-28  Score=159.46  Aligned_cols=105  Identities=24%  Similarity=0.408  Sum_probs=92.6

Q ss_pred             cceeecHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCc
Q 031752           27 EVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGA  106 (153)
Q Consensus        27 ~~~~i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~  106 (153)
                      .+..|+++++.+++++ .+|||||++.||..||||||  +|+|+.           ++.+.+..+ +++++||+||++|.
T Consensus         2 ~~~~is~~el~~~l~~-~~iiDvR~~~e~~~ghIpgA--~~ip~~-----------~l~~~~~~l-~~~~~ivvyC~~G~   66 (108)
T 3gk5_A            2 YYRSINAADLYENIKA-YTVLDVREPFELIFGSIANS--INIPIS-----------ELREKWKIL-ERDKKYAVICAHGN   66 (108)
T ss_dssp             -CCEECHHHHHHTTTT-CEEEECSCHHHHTTCBCTTC--EECCHH-----------HHHHHGGGS-CTTSCEEEECSSSH
T ss_pred             cccEeCHHHHHHHHcC-CEEEECCCHHHHhcCcCCCC--EEcCHH-----------HHHHHHHhC-CCCCeEEEEcCCCc
Confidence            3578999999999887 99999999999999999999  999996           676666554 88999999999999


Q ss_pred             cHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCCCC
Q 031752          107 RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKPA  147 (153)
Q Consensus       107 ~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~~  147 (153)
                      ||..+++.|.+.|| +|++|.||+.+|.++|.|+++..+.+
T Consensus        67 rs~~aa~~L~~~G~-~v~~l~GG~~~W~~~~~~~~~~~~~~  106 (108)
T 3gk5_A           67 RSAAAVEFLSQLGL-NIVDVEGGIQSWIEEGYPVVLEHHHH  106 (108)
T ss_dssp             HHHHHHHHHHTTTC-CEEEETTHHHHHHHTTCCCBCC----
T ss_pred             HHHHHHHHHHHcCC-CEEEEcCcHHHHHHcCCCCCCCCCCc
Confidence            99999999999999 99999999999999999998877643

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A

Probab=99.94  E-value=2.6e-27  Score=156.68  Aligned_cols=104  Identities=23%  Similarity=0.356  Sum_probs=94.0

Q ss_pred             CcceeecHHHHHHHHhC-CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCC
Q 031752           26 AEVITVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQS  104 (153)
Q Consensus        26 ~~~~~i~~~~~~~~~~~-~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~  104 (153)
                      ..+..|+++++.+++++ +.+|||||++.||..||||||  +|+|+.           ++.+.+.+ ++++++||+||++
T Consensus         2 ~~~~~i~~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgA--~~ip~~-----------~l~~~~~~-l~~~~~ivvyc~~   67 (108)
T 1gmx_A            2 DQFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQA--FHLTND-----------TLGAFMRD-NDFDTPVMVMCYH   67 (108)
T ss_dssp             CSCEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTC--EECCHH-----------HHHHHHHH-SCTTSCEEEECSS
T ss_pred             CcccccCHHHHHHHHhCCCCEEEEcCCHHHHHhCCCccC--EeCCHH-----------HHHHHHHh-cCCCCCEEEEcCC
Confidence            45788999999999876 489999999999999999999  999996           66666666 4899999999999


Q ss_pred             CccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCC
Q 031752          105 GARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKARE  144 (153)
Q Consensus       105 g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~  144 (153)
                      |.+|..+++.|...||+||++|.||+.+|.+. +|++.+.
T Consensus        68 g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~-~p~~~~~  106 (108)
T 1gmx_A           68 GNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAEVAY  106 (108)
T ss_dssp             SSHHHHHHHHHHHHTCSSEEEETTHHHHHHHH-CGGGEEC
T ss_pred             CchHHHHHHHHHHcCCceEEEecCCHHHHHHh-CCccccc
Confidence            99999999999999999999999999999999 9987654

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}

Probab=99.94  E-value=1.4e-27  Score=156.08  Aligned_cols=97  Identities=23%  Similarity=0.335  Sum_probs=86.2

Q ss_pred             eeecHHHHHHHHh--CCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCc
Q 031752           29 ITVDVRAAKNLLE--SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGA  106 (153)
Q Consensus        29 ~~i~~~~~~~~~~--~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~  106 (153)
                      ..|+++++.++++  ++.+|||||++.||..||||||  +|+|+.           ++.+.+.+ ++++++||+||++|.
T Consensus         2 ~~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA--~~ip~~-----------~l~~~~~~-l~~~~~ivvyC~~g~   67 (100)
T 3foj_A            2 ESITVTELKEKILDANPVNIVDVRTDQETAMGIIPGA--ETIPMN-----------SIPDNLNY-FNDNETYYIICKAGG   67 (100)
T ss_dssp             CEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTC--EECCGG-----------GGGGCGGG-SCTTSEEEEECSSSH
T ss_pred             CccCHHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCC--EECCHH-----------HHHHHHHh-CCCCCcEEEEcCCCc
Confidence            5799999999884  3489999999999999999999  999996           44344444 478999999999999


Q ss_pred             cHHHHHHHHHHCCccceeeccccHHHHHhCCCce
Q 031752          107 RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKV  140 (153)
Q Consensus       107 ~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~  140 (153)
                      +|..+++.|.+.|| +|++|.||+.+|.++|+|+
T Consensus        68 rs~~a~~~L~~~G~-~v~~l~GG~~~W~~~g~pv  100 (100)
T 3foj_A           68 RSAQVVQYLEQNGV-NAVNVEGGMDEFGDEGLEH  100 (100)
T ss_dssp             HHHHHHHHHHTTTC-EEEEETTHHHHHCSSSCBC
T ss_pred             hHHHHHHHHHHCCC-CEEEecccHHHHHHcCCCC
Confidence            99999999999999 9999999999999999985

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3

Probab=99.94  E-value=1.9e-26  Score=158.80  Aligned_cols=112  Identities=27%  Similarity=0.410  Sum_probs=96.9

Q ss_pred             cCCcceeecHHHHHHHHh-C-CCeEEecCChhhhhc-CC--CCCcceeCccccccCCCCCCCChHHHH--HHHhhccCCC
Q 031752           24 SGAEVITVDVRAAKNLLE-S-GYGYLDVRTAEEFKE-GH--VDAAKIFNIPYMFNTPEGRVKNPDFLK--KVRSLCKEED   96 (153)
Q Consensus        24 ~~~~~~~i~~~~~~~~~~-~-~~~iIDvR~~~e~~~-gh--i~ga~~i~ip~~~~~~~~~~~~~~~~~--~~~~~~~~~~   96 (153)
                      .......|+++++.++++ + +.+|||||++.||.. ||  ||||  +|||+.           ++..  .+.. +++++
T Consensus        18 ~~~~~~~is~~el~~~l~~~~~~~liDVR~~~E~~~~gh~~IpgA--inip~~-----------~l~~~~~~~~-l~~~~   83 (137)
T 1qxn_A           18 AKADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNY--KHMSRG-----------KLEPLLAKSG-LDPEK   83 (137)
T ss_dssp             HHHSSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSE--EECCTT-----------TSHHHHHHHC-CCTTS
T ss_pred             hhccCcccCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCcCCCCC--EEcchH-----------HhhhHHhhcc-CCCCC
Confidence            345678999999999997 5 489999999999999 99  9999  999995           2222  3333 58899


Q ss_pred             eEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCCCCCC
Q 031752           97 RLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKPADH  149 (153)
Q Consensus        97 ~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~~~~  149 (153)
                      +||+||++|.||..+++.|.+.||+||++|.||+.+|.++|+|++++.++-.|
T Consensus        84 ~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~  136 (137)
T 1qxn_A           84 PVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDRSHHHHH  136 (137)
T ss_dssp             CEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEECCCCCCCC
T ss_pred             eEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHHHHHCCCCcccccccccC
Confidence            99999999999999999999999999999999999999999999987765443

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.1e-26  Score=160.03  Aligned_cols=117  Identities=21%  Similarity=0.319  Sum_probs=96.0

Q ss_pred             cCCcceeecHHHHHHHHh---CCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEE
Q 031752           24 SGAEVITVDVRAAKNLLE---SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLV   99 (153)
Q Consensus        24 ~~~~~~~i~~~~~~~~~~---~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv   99 (153)
                      .......|+++++.++++   .+.+|||||++.||..||||||  +|+|+..+.........+|.+.+... ++++++||
T Consensus        18 ~~~~~~~is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgA--inip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~iv   95 (139)
T 3d1p_A           18 NVSNIQSYSFEDMKRIVGKHDPNVVLVDVREPSEYSIVHIPAS--INVPYRSHPDAFALDPLEFEKQIGIPKPDSAKELI   95 (139)
T ss_dssp             --CCCEECCHHHHHHHHHHTCTTEEEEECSCHHHHHHCCCTTC--EECCTTTCTTGGGSCHHHHHHHHSSCCCCTTSEEE
T ss_pred             CCCCcceecHHHHHHHHhCCCCCeEEEECcCHHHHhCCCCCCc--EEcCHHHhhhhccCCHHHHHHHHhccCCCCCCeEE
Confidence            345678999999999986   3478999999999999999999  99999765322222223455555433 67899999


Q ss_pred             EEeCCCccHHHHHHHHHHCCccceeeccccHHHHHhCCCceec
Q 031752          100 VGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA  142 (153)
Q Consensus       100 i~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~  142 (153)
                      +||.+|.||..+++.|.+.||+||++|.||+.+|.+.|+|+..
T Consensus        96 vyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  138 (139)
T 3d1p_A           96 FYCASGKRGGEAQKVASSHGYSNTSLYPGSMNDWVSHGGDKLD  138 (139)
T ss_dssp             EECSSSHHHHHHHHHHHTTTCCSEEECTTHHHHHHHTTGGGCC
T ss_pred             EECCCCchHHHHHHHHHHcCCCCeEEeCCcHHHHHHcCCCCCC
Confidence            9999999999999999999999999999999999999999753

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A

Probab=99.94  E-value=7.3e-27  Score=154.21  Aligned_cols=100  Identities=27%  Similarity=0.434  Sum_probs=83.4

Q ss_pred             HHHHHHh---CCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCccHHHH
Q 031752           35 AAKNLLE---SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHA  111 (153)
Q Consensus        35 ~~~~~~~---~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~~a~~~  111 (153)
                      ++.++++   .+.+|||||++.||..||||||  +|+|+.           ++.+.+.+.++++++||+||.+|.+|..+
T Consensus         2 el~~~l~~~~~~~~liDvR~~~e~~~ghIpgA--i~ip~~-----------~l~~~~~~~l~~~~~ivvyc~~g~rs~~a   68 (106)
T 3hix_A            2 VLKSRLEWGEPAFTILDVRDRSTYNDGHIMGA--MAMPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQTSQA   68 (106)
T ss_dssp             -----------CCEEEECSCHHHHHTCEETTC--EECCGG-----------GHHHHHHHHSCTTSCEEEECSSHHHHHHH
T ss_pred             hHHHHHHcCCCCeEEEECCCHHHHhcCcCCCC--EeCCHH-----------HHHHHHHhcCCCCCeEEEEECCCChHHHH
Confidence            4566665   2389999999999999999999  999996           67666655568999999999999999999


Q ss_pred             HHHHHHCCccceeeccccHHHHHhCCCceecCCCCC
Q 031752          112 TADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKPA  147 (153)
Q Consensus       112 ~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~~  147 (153)
                      ++.|...||+||++|.||+.+|.++|+|+++..+.+
T Consensus        69 ~~~L~~~G~~~v~~l~GG~~~W~~~g~~~~~~~~~~  104 (106)
T 3hix_A           69 VNLLRSAGFEHVSELKGGLAAWKAIGGPTELEHHHH  104 (106)
T ss_dssp             HHHHHHTTCSCEEECTTHHHHHHHTTCCEEECCEEE
T ss_pred             HHHHHHcCCcCEEEecCCHHHHHHCCCCCCCCCCCC
Confidence            999999999999999999999999999998876543

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A

Probab=99.94  E-value=1.2e-26  Score=160.61  Aligned_cols=102  Identities=27%  Similarity=0.423  Sum_probs=92.5

Q ss_pred             ecHHHHHHHHhC---CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCcc
Q 031752           31 VDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGAR  107 (153)
Q Consensus        31 i~~~~~~~~~~~---~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~~  107 (153)
                      |+++++.+++++   +.+|||||++.||..||||||  +|+|+.           ++.+.+...++++++||+||++|.+
T Consensus         2 Is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgA--i~ip~~-----------~l~~~~~~~l~~~~~ivvyC~~g~r   68 (141)
T 3ilm_A            2 SDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGA--MAMPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQ   68 (141)
T ss_dssp             CCHHHHHHHHHHSCSCEEEEECSCHHHHHHCEETTC--EECCGG-----------GHHHHHHTTSCTTSEEEEECSSHHH
T ss_pred             CCHHHHHHHHhcCCCCEEEEECCCHHHHhCCCCCCC--EEcCHH-----------HHHHHHHhcCCCCCeEEEEECCChH
Confidence            789999999973   378999999999999999999  999996           6777665557899999999999999


Q ss_pred             HHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCC
Q 031752          108 SLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREK  145 (153)
Q Consensus       108 a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~  145 (153)
                      |..+++.|...||+||++|.||+.+|.++|+|+++..+
T Consensus        69 s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~  106 (141)
T 3ilm_A           69 TSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEGIIE  106 (141)
T ss_dssp             HHHHHHHHHHTTCCSEEECTTHHHHHHHTTCCEEEEC-
T ss_pred             HHHHHHHHHHcCCCCEEEecCHHHHHHHCCCCcccCCC
Confidence            99999999999999999999999999999999998764

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}

Probab=99.94  E-value=2.5e-26  Score=158.13  Aligned_cols=110  Identities=22%  Similarity=0.343  Sum_probs=91.1

Q ss_pred             CCcceeecHHHHHHHHh--C-CCeEEecCChhhhhc-CCCCCcceeCccccccCCCCCCCChHHHHHHH-------hhcc
Q 031752           25 GAEVITVDVRAAKNLLE--S-GYGYLDVRTAEEFKE-GHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVR-------SLCK   93 (153)
Q Consensus        25 ~~~~~~i~~~~~~~~~~--~-~~~iIDvR~~~e~~~-ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~-------~~~~   93 (153)
                      ......|+++++.++++  + +.+|||||++.||.. ||||||  +|+|+.           ++...+.       ..++
T Consensus        18 ~~~~~~is~~~l~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA--~~ip~~-----------~l~~~~~~~~~~~~~~~~   84 (139)
T 2hhg_A           18 NSSIETLTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGS--FSCTRG-----------MLEFWIDPQSPYAKPIFQ   84 (139)
T ss_dssp             HTTSEEECHHHHHHHHHTTCTTEEEEECSCHHHHHHHCCCTTC--EECCGG-----------GHHHHHCTTSTTCCGGGG
T ss_pred             HHhcCccCHHHHHHHHhccCCCeEEEECCCHHHHHhCCCCCCe--EECChH-----------HHHHhcCccchhhhccCC
Confidence            45678999999999997  4 478999999999999 999999  999996           3333222       1247


Q ss_pred             CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCCCC
Q 031752           94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKPA  147 (153)
Q Consensus        94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~~  147 (153)
                      ++++||+||++|.+|..+++.|+..||+||++|.||+.+|.++|+|++++.+++
T Consensus        85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~  138 (139)
T 2hhg_A           85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGAWRDAGGPIEAWAPKK  138 (139)
T ss_dssp             SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHHHHHHTTCCCC------
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCCeecCCCCC
Confidence            899999999999999999999999999999999999999999999999876543

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}

Probab=99.92  E-value=4.4e-26  Score=151.38  Aligned_cols=102  Identities=20%  Similarity=0.327  Sum_probs=87.8

Q ss_pred             cceeecHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEEEEeCCC
Q 031752           27 EVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSG  105 (153)
Q Consensus        27 ~~~~i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivi~c~~g  105 (153)
                      ....|+++++   .+++.+|||||++.||..||||||  +|+|+.           ++.+.+... ++++++||+||++|
T Consensus         3 ~~~~is~~el---~~~~~~liDvR~~~e~~~ghIpgA--i~ip~~-----------~l~~~~~~~~~~~~~~ivvyC~~G   66 (110)
T 2k0z_A            3 EDYAISLEEV---NFNDFIVVDVRELDEYEELHLPNA--TLISVN-----------DQEKLADFLSQHKDKKVLLHCRAG   66 (110)
T ss_dssp             TTTEEETTTC---CGGGSEEEEEECHHHHHHSBCTTE--EEEETT-----------CHHHHHHHHHSCSSSCEEEECSSS
T ss_pred             ceeeeCHHHh---ccCCeEEEECCCHHHHhcCcCCCC--EEcCHH-----------HHHHHHHhcccCCCCEEEEEeCCC
Confidence            3456777776   234589999999999999999999  999996           555555543 68999999999999


Q ss_pred             ccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCC
Q 031752          106 ARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREK  145 (153)
Q Consensus       106 ~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~  145 (153)
                      .||..+++.|...||++ ++|.||+.+|.++|+|++++..
T Consensus        67 ~rs~~aa~~L~~~G~~~-~~l~GG~~~W~~~g~p~~~~~~  105 (110)
T 2k0z_A           67 RRALDAAKSMHELGYTP-YYLEGNVYDFEKYGFRMVYDDT  105 (110)
T ss_dssp             HHHHHHHHHHHHTTCCC-EEEESCGGGTTTTTCCCBCCCS
T ss_pred             chHHHHHHHHHHCCCCE-EEecCCHHHHHHCCCcEecCCC
Confidence            99999999999999999 9999999999999999987664

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A

Probab=99.92  E-value=2.6e-25  Score=154.30  Aligned_cols=105  Identities=23%  Similarity=0.311  Sum_probs=89.5

Q ss_pred             eeecHHHHHHHHhCC---CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCC
Q 031752           29 ITVDVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSG  105 (153)
Q Consensus        29 ~~i~~~~~~~~~~~~---~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g  105 (153)
                      ..|+++++.++++++   .+|||||++.||..||||||  +|+|+..+..          +.+. .++++++||+||.+|
T Consensus        16 ~~is~~el~~~l~~~~~~~~liDvR~~~ey~~ghIpgA--inip~~~l~~----------~~~~-~l~~~~~ivvyC~~g   82 (144)
T 3nhv_A           16 YETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTA--ISIPGNKINE----------DTTK-RLSKEKVIITYCWGP   82 (144)
T ss_dssp             TEEEHHHHHHHHHTTCCSEEEEECSCHHHHHHCBCTTC--EECCGGGCST----------TTTT-TCCTTSEEEEECSCT
T ss_pred             cccCHHHHHHHHHcCCCCEEEEECcCHHHHhcCCCCCC--EECCHHHHhH----------HHHh-hCCCCCeEEEEECCC
Confidence            568999999999753   78999999999999999999  9999964321          0111 257899999999988


Q ss_pred             --ccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCCCC
Q 031752          106 --ARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKPA  147 (153)
Q Consensus       106 --~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~~  147 (153)
                        .+|..+++.|+..|| +|++|.||+.+|.++|+|++++.+..
T Consensus        83 ~~~rs~~aa~~L~~~G~-~v~~l~GG~~~W~~~g~pv~~~~~~~  125 (144)
T 3nhv_A           83 ACNGATKAAAKFAQLGF-RVKELIGGIEYWRKENGEVEGTLGAK  125 (144)
T ss_dssp             TCCHHHHHHHHHHHTTC-EEEEEESHHHHHHHTTCCCBSSSGGG
T ss_pred             CccHHHHHHHHHHHCCC-eEEEeCCcHHHHHHCCCCccCCCCCC
Confidence              699999999999999 59999999999999999999876533

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=99.92  E-value=4.4e-26  Score=147.28  Aligned_cols=93  Identities=26%  Similarity=0.247  Sum_probs=77.0

Q ss_pred             eeecHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCccH
Q 031752           29 ITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARS  108 (153)
Q Consensus        29 ~~i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~~a  108 (153)
                      ..|+++++.++++++.+|||||++.||..||||||  +|+|+.           ++.+.+.+ +++ ++||+||++|.+|
T Consensus         2 ~~is~~~l~~~~~~~~~liDvR~~~e~~~ghi~gA--i~ip~~-----------~l~~~~~~-l~~-~~ivvyC~~g~rs   66 (94)
T 1wv9_A            2 RKVRPEELPALLEEGVLVVDVRPADRRSTPLPFAA--EWVPLE-----------KIQKGEHG-LPR-RPLLLVCEKGLLS   66 (94)
T ss_dssp             CEECGGGHHHHHHTTCEEEECCCC--CCSCCSSCC--EECCHH-----------HHTTTCCC-CCS-SCEEEECSSSHHH
T ss_pred             CcCCHHHHHHHHHCCCEEEECCCHHHHhcccCCCC--EECCHH-----------HHHHHHHh-CCC-CCEEEEcCCCChH
Confidence            57899999999887889999999999999999999  999996           33333333 467 9999999999999


Q ss_pred             HHHHHHHHHCCccceeeccccHHHHHhCC
Q 031752          109 LHATADLLGAGFKHVSNFGGGHMAWVQNG  137 (153)
Q Consensus       109 ~~~~~~L~~~G~~~v~~l~gG~~~w~~~g  137 (153)
                      ..+++.|...||+ |++|.||+.+|.++|
T Consensus        67 ~~a~~~L~~~G~~-v~~l~GG~~~W~~~G   94 (94)
T 1wv9_A           67 QVAALYLEAEGYE-AMSLEGGLQALTQGK   94 (94)
T ss_dssp             HHHHHHHHHHTCC-EEEETTGGGCC----
T ss_pred             HHHHHHHHHcCCc-EEEEcccHHHHHhCc
Confidence            9999999999999 999999999998765

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A

Probab=99.92  E-value=5.6e-25  Score=148.93  Aligned_cols=101  Identities=23%  Similarity=0.339  Sum_probs=89.1

Q ss_pred             eeecHHHHHHHHhCC---CeEEecCChhhh-hcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCC
Q 031752           29 ITVDVRAAKNLLESG---YGYLDVRTAEEF-KEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQS  104 (153)
Q Consensus        29 ~~i~~~~~~~~~~~~---~~iIDvR~~~e~-~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~  104 (153)
                      ..|+++++.++++++   .+|||||++.|| ..||||||  +|||+.           ++.+.+.. ++++++||+||++
T Consensus        15 ~~is~~el~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA--~nip~~-----------~l~~~~~~-l~~~~~ivvyC~~   80 (124)
T 3flh_A           15 LYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGA--IAMPAK-----------DLATRIGE-LDPAKTYVVYDWT   80 (124)
T ss_dssp             TEECHHHHHHHHHHTCCCEEEEECCCSCHHHHCCEETTC--EECCHH-----------HHHHHGGG-SCTTSEEEEECSS
T ss_pred             ceecHHHHHHHHHcCCCCEEEEECCCHHHHHhcCcCCCC--EECCHH-----------HHHHHHhc-CCCCCeEEEEeCC
Confidence            579999999998742   789999999998 99999999  999996           66666655 4889999999999


Q ss_pred             Ccc--HHHHHHHHHHCCccceeeccccHHHHHhCCCceecCC
Q 031752          105 GAR--SLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKARE  144 (153)
Q Consensus       105 g~~--a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~  144 (153)
                      |.+  |..+++.|...||+ |++|.||+.+|..+|.|..+..
T Consensus        81 g~r~~s~~a~~~L~~~G~~-v~~l~GG~~~W~~~~~p~~~~~  121 (124)
T 3flh_A           81 GGTTLGKTALLVLLSAGFE-AYELAGALEGWKGMQLPLEHHH  121 (124)
T ss_dssp             SSCSHHHHHHHHHHHHTCE-EEEETTHHHHHHHTTCCEEC--
T ss_pred             CCchHHHHHHHHHHHcCCe-EEEeCCcHHHHHHcCCCCCccc
Confidence            998  89999999999997 9999999999999999987653

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}

Probab=99.91  E-value=1.9e-24  Score=150.45  Aligned_cols=115  Identities=23%  Similarity=0.317  Sum_probs=91.4

Q ss_pred             CcceeecHHHHHHHHhC--CCeEEecCChhhhhc-CCC------CCcceeCccccccCCCCCCCChHHHHHHHhh-----
Q 031752           26 AEVITVDVRAAKNLLES--GYGYLDVRTAEEFKE-GHV------DAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-----   91 (153)
Q Consensus        26 ~~~~~i~~~~~~~~~~~--~~~iIDvR~~~e~~~-ghi------~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-----   91 (153)
                      +....|+++++.+++++  +.+|||||++.||.. |||      |||  +|+|+..  ..... .++|.+.+.+.     
T Consensus         2 ~~~~~is~~el~~~l~~~~~~~liDVR~~~e~~~~ghi~~~g~~pgA--v~ip~~~--~~~~~-~~~~~~~l~~~l~~~~   76 (148)
T 2fsx_A            2 SYAGDITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREV--VYVEWAT--SDGTH-NDNFLAELRDRIPADA   76 (148)
T ss_dssp             CCSEEECHHHHHHHHHHCTTCEEEECSCHHHHHHTCEECCGGGTCCC--EECCSBC--TTSCB-CTTHHHHHHHHCC---
T ss_pred             CccccCCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCCccccCCCCc--EEeeeec--ccccc-CHHHHHHHHHHHhhcc
Confidence            35678999999999873  589999999999997 999      999  9999975  11111 23455555543     


Q ss_pred             ccCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccH------------HHHHhCCCceecCCC
Q 031752           92 CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH------------MAWVQNGLKVKAREK  145 (153)
Q Consensus        92 ~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~------------~~w~~~g~~~~~~~~  145 (153)
                      ++++++||+||++|.||..+++.|...||+||++|.||+            .+|+++|+|++....
T Consensus        77 ~~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~w~~~~g~~~~~~W~~~glp~~~~~~  142 (148)
T 2fsx_A           77 DQHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFEGHLDAEGHRGATGWRAVGLPWRQGRS  142 (148)
T ss_dssp             ----CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTTCCCCTTSCCCSSSTTTTTCSEECC--
T ss_pred             CCCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChhhhhhhccccccccHHHcCCCCCcccc
Confidence            378999999999999999999999999999999999999            689999999987654

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A

Probab=99.90  E-value=3.7e-24  Score=146.69  Aligned_cols=114  Identities=21%  Similarity=0.265  Sum_probs=94.0

Q ss_pred             cceeecHHHHHHHHh-C-CCeEEecCChhhhhc-CCC------CCcceeCccccccCCCCCCCChHHHHHHHhhc--cCC
Q 031752           27 EVITVDVRAAKNLLE-S-GYGYLDVRTAEEFKE-GHV------DAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLC--KEE   95 (153)
Q Consensus        27 ~~~~i~~~~~~~~~~-~-~~~iIDvR~~~e~~~-ghi------~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~--~~~   95 (153)
                      ....|+++++.++++ + +.+|||||++.||.. +|+      |||  +|||+...      ..++|.+.+.+..  +++
T Consensus         3 ~~~~is~~e~~~~l~~~~~~~liDVR~~~E~~~~~~~~~~g~~~ga--~~ip~~~~------~~~~~~~~l~~~~~~~~~   74 (134)
T 1vee_A            3 SGSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKA--VSTVYNGE------DKPGFLKKLSLKFKDPEN   74 (134)
T ss_dssp             CSCBCCHHHHHHHHHHCTTEEEEECSCHHHHHHTCEECCTTTSCCC--EECCCCGG------GHHHHHHHHHTTCSCGGG
T ss_pred             CCCccCHHHHHHHHHhCCCeEEEEcCCHHHHhhcCCCcccccCCce--EEeecccc------cChhHHHHHHHHhCCCCC
Confidence            456799999999887 3 478999999999986 444      799  99998532      1235666665543  789


Q ss_pred             CeEEEEeCCCccHHHHHHHHHHCCccceeeccccH---HHHHhCCCceecCCCCCC
Q 031752           96 DRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH---MAWVQNGLKVKAREKPAD  148 (153)
Q Consensus        96 ~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~---~~w~~~g~~~~~~~~~~~  148 (153)
                      ++||+||++|.||..+++.|.++||+||+.|.||+   .+|+++|+|++.+....+
T Consensus        75 ~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~~~~~W~~~g~p~~~~~~~~~  130 (134)
T 1vee_A           75 TTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPWIEPKKTSG  130 (134)
T ss_dssp             CEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTTSTTSSGGGTCCEECCCCCCC
T ss_pred             CEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCccCCcchhhcCCCCCCCCCCCC
Confidence            99999999999999999999999999999999999   789999999998775444

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1

Probab=99.90  E-value=1.3e-24  Score=152.04  Aligned_cols=111  Identities=18%  Similarity=0.259  Sum_probs=91.0

Q ss_pred             CCcceeecHHHHHHHHhC-CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeC
Q 031752           25 GAEVITVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQ  103 (153)
Q Consensus        25 ~~~~~~i~~~~~~~~~~~-~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~  103 (153)
                      ...+..|+++++.+++++ +.+|||||++.||..||||||  +|||+..+.      . .+ +.+...++++++||+||+
T Consensus        24 ~~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpgA--inip~~~l~------~-~~-~~l~~~~~~~~~iVvyC~   93 (152)
T 1t3k_A           24 ARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGS--LHYASGSFD------D-KI-SHLVQNVKDKDTLVFHSA   93 (152)
T ss_dssp             CSSSEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSS--EEECCSSSS------T-TH-HHHHHTCCSCCEEEESSS
T ss_pred             cCCCceECHHHHHHHhcCCCEEEEECCChhhccCccCCCC--EECCHHHHH------H-HH-HHHHHhcCCCCEEEEEcC
Confidence            445788999999888864 478999999999999999999  999996332      1 22 222222478899999999


Q ss_pred             -CCccHHHHHHHHH--------HCCccceeeccccHHHHHhCCCceecCCC
Q 031752          104 -SGARSLHATADLL--------GAGFKHVSNFGGGHMAWVQNGLKVKAREK  145 (153)
Q Consensus       104 -~g~~a~~~~~~L~--------~~G~~~v~~l~gG~~~w~~~g~~~~~~~~  145 (153)
                       +|.++..+++.|.        ..||+||++|.||+.+|.++|+|+++..+
T Consensus        94 ~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~~~  144 (152)
T 1t3k_A           94 LSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRCAE  144 (152)
T ss_dssp             CCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSCCCSC
T ss_pred             CCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHHHHHcCCccccCCC
Confidence             9999998888875        38999999999999999999999987664

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.89  E-value=7.9e-23  Score=154.64  Aligned_cols=117  Identities=16%  Similarity=0.151  Sum_probs=99.4

Q ss_pred             ceeecHHHHHHHHhC-CCeEEecCChhhhhcCCCCCcceeCccccccCCC-----CCCC-ChHHHHHHHhh-ccCCCeEE
Q 031752           28 VITVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPE-----GRVK-NPDFLKKVRSL-CKEEDRLV   99 (153)
Q Consensus        28 ~~~i~~~~~~~~~~~-~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~-----~~~~-~~~~~~~~~~~-~~~~~~iv   99 (153)
                      ...|+++++.+++++ +.+|||||++.||..||||||  +|+|+..+...     ..++ ...|.+.+.++ ++++++||
T Consensus         8 ~~~is~~~l~~~l~~~~~~iiDvR~~~ey~~ghIpgA--~~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~vv   85 (271)
T 1e0c_A            8 PLVIEPADLQARLSAPELILVDLTSAARYAEGHIPGA--RFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYV   85 (271)
T ss_dssp             CSEECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTC--EECCGGGGSCCCTTCTTSCCCHHHHHHHHHHHTCCTTCEEE
T ss_pred             CceeeHHHHHHhccCCCeEEEEcCCcchhhhCcCCCC--EECCHHHhccCCCCCCCCCCCHHHHHHHHHHcCCCCCCeEE
Confidence            458999999999864 578999999999999999999  99999765321     1222 23677777776 78999999


Q ss_pred             EEeCCCc-cHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCCC
Q 031752          100 VGCQSGA-RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKP  146 (153)
Q Consensus       100 i~c~~g~-~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~  146 (153)
                      +||++|. ++.++++.|+..||++|++|.||+.+|+++|+|+++..+.
T Consensus        86 vyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~~w~~~g~p~~~~~~~  133 (271)
T 1e0c_A           86 VYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSRELPA  133 (271)
T ss_dssp             EECSSSSHHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCCCCC
T ss_pred             EEcCCCCccHHHHHHHHHHcCCCCeEEecCCHHHHHHcCCCccCCCCC
Confidence            9999887 9999999999999999999999999999999999877654

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}

Probab=99.89  E-value=2.8e-23  Score=141.40  Aligned_cols=104  Identities=25%  Similarity=0.350  Sum_probs=79.6

Q ss_pred             cceeecHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCC----------------------CCCChHH
Q 031752           27 EVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEG----------------------RVKNPDF   84 (153)
Q Consensus        27 ~~~~i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~----------------------~~~~~~~   84 (153)
                      .+..|+++++.+  .++.+|||||++.||..||||||  +|+|+..+....                      .-..+++
T Consensus         3 ~~~~i~~~el~~--~~~~~iiDvR~~~e~~~ghIpgA--~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (134)
T 3g5j_A            3 AMSVIKIEKALK--LDKVIFVDVRTEGEYEEDHILNA--INMPLFKNNEHNEVGTIYKMQGKHEAIQKGFDYVSYKLKDI   78 (134)
T ss_dssp             --CEECHHHHTT--CTTEEEEECSCHHHHHHCCCTTC--EECCSSCHHHHHHHHHHHHHHCHHHHHHHHHHHHGGGHHHH
T ss_pred             CccccCHHHHHh--cCCcEEEEcCCHHHHhcCCCCCC--EEcCccchhhhhcccceeeecChhHHHhcccccccccHHHH
Confidence            356899998876  45689999999999999999999  999995221000                      0000134


Q ss_pred             HHHHHhhccCC-CeEEEEe-CCCccHHHHHHHHHHCCccceeeccccHHHHHhC
Q 031752           85 LKKVRSLCKEE-DRLVVGC-QSGARSLHATADLLGAGFKHVSNFGGGHMAWVQN  136 (153)
Q Consensus        85 ~~~~~~~~~~~-~~ivi~c-~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~  136 (153)
                      .+.+.. ++++ ++||+|| .+|.+|..+++.|+.+|| +|++|.||+.+|++.
T Consensus        79 ~~~~~~-~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~-~v~~l~GG~~~W~~~  130 (134)
T 3g5j_A           79 YLQAAE-LALNYDNIVIYCARGGMRSGSIVNLLSSLGV-NVYQLEGGYKAYRNF  130 (134)
T ss_dssp             HHHHHH-HHTTCSEEEEECSSSSHHHHHHHHHHHHTTC-CCEEETTHHHHHHHH
T ss_pred             HHHHHH-hccCCCeEEEEECCCChHHHHHHHHHHHcCC-ceEEEeCcHHHHHHH
Confidence            444444 3677 9999999 589999999999999999 999999999999874

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A

Probab=99.88  E-value=2.3e-23  Score=132.04  Aligned_cols=77  Identities=30%  Similarity=0.509  Sum_probs=70.1

Q ss_pred             CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEEEEeCCCccHHHHHHHHHHCCccc
Q 031752           44 YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSGARSLHATADLLGAGFKH  122 (153)
Q Consensus        44 ~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~  122 (153)
                      .+|||||++.||..||||||  +|+|+.           ++.+.+.++ .+++++||+||++|.+|..+++.|.+.||++
T Consensus         2 ~~liDvR~~~e~~~ghIpgA--~~ip~~-----------~l~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~   68 (85)
T 2jtq_A            2 EHWIDVRVPEQYQQEHVQGA--INIPLK-----------EVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTH   68 (85)
T ss_dssp             EEEEECSCHHHHTTEEETTC--EECCHH-----------HHHHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSS
T ss_pred             CEEEECCCHHHHHhCCCCCC--EEcCHH-----------HHHHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCC
Confidence            57899999999999999999  999996           677777666 6889999999999999999999999999999


Q ss_pred             eeeccccHHHHH
Q 031752          123 VSNFGGGHMAWV  134 (153)
Q Consensus       123 v~~l~gG~~~w~  134 (153)
                      |+++ ||+.+|.
T Consensus        69 v~~l-GG~~~w~   79 (85)
T 2jtq_A           69 VENA-GGLKDIA   79 (85)
T ss_dssp             EEEE-EETTTCC
T ss_pred             EEec-cCHHHHh
Confidence            9999 9988884

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.88  E-value=1.7e-22  Score=153.50  Aligned_cols=116  Identities=20%  Similarity=0.251  Sum_probs=98.6

Q ss_pred             ceeecHHHHHHHHhC-CCeEEecC----------ChhhhhcCCCCCcceeCccccccCCC-----CCCC-ChHHHHHHHh
Q 031752           28 VITVDVRAAKNLLES-GYGYLDVR----------TAEEFKEGHVDAAKIFNIPYMFNTPE-----GRVK-NPDFLKKVRS   90 (153)
Q Consensus        28 ~~~i~~~~~~~~~~~-~~~iIDvR----------~~~e~~~ghi~ga~~i~ip~~~~~~~-----~~~~-~~~~~~~~~~   90 (153)
                      ...|+++++.+++++ +.+|||||          ++.||..||||||  +|+|+..+...     ..++ ..+|.+.+.+
T Consensus         3 ~~~is~~~l~~~l~~~~~~iiDvR~~~~~~~~~~~~~e~~~ghIpgA--i~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~   80 (280)
T 1urh_A            3 TWFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGA--VFFDIEALSDHTSPLPHMLPRPETFAVAMRE   80 (280)
T ss_dssp             CCEECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTC--EECCGGGGSCSSSSSSSCCCCHHHHHHHHHH
T ss_pred             CceeeHHHHHHhcCCCCeEEEEeeccCCcccccchhhhhhhCcCCCC--EECCHHHhcCCCCCCCCCCCCHHHHHHHHHH
Confidence            357999999999875 58899999          7899999999999  99999765221     1222 2467777877


Q ss_pred             h-ccCCCeEEEEeCCCcc-HHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCC
Q 031752           91 L-CKEEDRLVVGCQSGAR-SLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREK  145 (153)
Q Consensus        91 ~-~~~~~~ivi~c~~g~~-a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~  145 (153)
                      + ++++++||+||++|.+ |.++++.|+.+||++|++|+||+.+|.++|+|++++.+
T Consensus        81 ~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~  137 (280)
T 1urh_A           81 LGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEEGAV  137 (280)
T ss_dssp             TTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBBSCC
T ss_pred             cCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHHCCCcccCCCC
Confidence            7 7899999999999988 99999999999999999999999999999999998765

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.88  E-value=1.4e-22  Score=156.92  Aligned_cols=116  Identities=14%  Similarity=0.150  Sum_probs=97.3

Q ss_pred             ceeecHHHHHHHHhC-CCeEEecCChhh-hhcCCCCCcceeCcccccc---CCCCCCCC-hHHHHHHHhh-ccCCCeEEE
Q 031752           28 VITVDVRAAKNLLES-GYGYLDVRTAEE-FKEGHVDAAKIFNIPYMFN---TPEGRVKN-PDFLKKVRSL-CKEEDRLVV  100 (153)
Q Consensus        28 ~~~i~~~~~~~~~~~-~~~iIDvR~~~e-~~~ghi~ga~~i~ip~~~~---~~~~~~~~-~~~~~~~~~~-~~~~~~ivi  100 (153)
                      ...|+++++.+++++ +.+|||||++.| |..||||||  +|+|+...   .....+++ ++|.+.+.++ ++++++||+
T Consensus        39 ~~~is~~~l~~~l~~~~~~iiDvR~~~e~y~~gHIpGA--i~ip~~~~~~~~~~~~~~~~~~~~~~l~~lgi~~~~~vVv  116 (318)
T 3hzu_A           39 ERLVTADWLSAHMGAPGLAIVESDEDVLLYDVGHIPGA--VKIDWHTDLNDPRVRDYINGEQFAELMDRKGIARDDTVVI  116 (318)
T ss_dssp             GGEECHHHHHHHTTCTTEEEEECCSSTTSGGGCBCTTE--EECCHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEE
T ss_pred             CceecHHHHHHhccCCCEEEEECCCChhHHhcCcCCCC--eEeCchhhhccCcccCCCCHHHHHHHHHHcCCCCCCeEEE
Confidence            457999999999865 488999999886 999999999  99997421   11222333 3777788777 899999999


Q ss_pred             EeCCCc-cHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCC
Q 031752          101 GCQSGA-RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREK  145 (153)
Q Consensus       101 ~c~~g~-~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~  145 (153)
                      ||++|. +|.++++.|+.+||+||++|+||+.+|+++|+|++++.+
T Consensus       117 yc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~~~  162 (318)
T 3hzu_A          117 YGDKSNWWAAYALWVFTLFGHADVRLLNGGRDLWLAERRETTLDVP  162 (318)
T ss_dssp             ECSGGGHHHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBCCCC
T ss_pred             ECCCCCccHHHHHHHHHHcCCCceEEccCCHHHHhhcCCCcccCCC
Confidence            999887 899999999999999999999999999999999988654

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}

Probab=99.88  E-value=3.2e-23  Score=140.07  Aligned_cols=104  Identities=28%  Similarity=0.282  Sum_probs=81.6

Q ss_pred             eecHHHHHHHHhCC--CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHh----h-----ccCCCeE
Q 031752           30 TVDVRAAKNLLESG--YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRS----L-----CKEEDRL   98 (153)
Q Consensus        30 ~i~~~~~~~~~~~~--~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~i   98 (153)
                      +|+++++.++++++  .+|||||++.||..||||||  +|+|+..+...    ..++...+.+    .     ++++++|
T Consensus         2 ~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA--~~ip~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i   75 (127)
T 3i2v_A            2 RVSVTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHA--LHIPLKHLERR----DAESLKLLKEAIWEEKQGTQEGAAVPI   75 (127)
T ss_dssp             EECHHHHHHHHHHTCCCEEEECSCHHHHHHCCCTTS--EECCHHHHHTT----CHHHHHHHHHHHHHHHTTC---CCEEE
T ss_pred             CCCHHHHHHHHhCCCCeEEEECCCHHHhhheecCCc--eeCChHHHhhh----hhhhHHHHHHHHhhhcccccCCCCCeE
Confidence            68999999998743  89999999999999999999  99999754221    1122222211    1     2345599


Q ss_pred             EEEeCCCccHHHHHHHHHHC------CccceeeccccHHHHHhCCCc
Q 031752           99 VVGCQSGARSLHATADLLGA------GFKHVSNFGGGHMAWVQNGLK  139 (153)
Q Consensus        99 vi~c~~g~~a~~~~~~L~~~------G~~~v~~l~gG~~~w~~~g~~  139 (153)
                      |+||++|.+|..+++.|.+.      ||.+|++|.||+.+|.++..|
T Consensus        76 vv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~W~~~~~~  122 (127)
T 3i2v_A           76 YVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMAWAAKIDG  122 (127)
T ss_dssp             EEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHHHHHHTCT
T ss_pred             EEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHHHHHHhcCC
Confidence            99999999999999999998      689999999999999986544

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.88  E-value=1.7e-22  Score=152.83  Aligned_cols=112  Identities=20%  Similarity=0.314  Sum_probs=94.0

Q ss_pred             eeecHHHHHHHHhCC-CeEEecCChhhhh--------cCCCCCcceeCccccccC-CC-CCCCChHHHHHHHhh-ccCCC
Q 031752           29 ITVDVRAAKNLLESG-YGYLDVRTAEEFK--------EGHVDAAKIFNIPYMFNT-PE-GRVKNPDFLKKVRSL-CKEED   96 (153)
Q Consensus        29 ~~i~~~~~~~~~~~~-~~iIDvR~~~e~~--------~ghi~ga~~i~ip~~~~~-~~-~~~~~~~~~~~~~~~-~~~~~   96 (153)
                      ..++++++.+.++++ .+|||||++.||.        .||||||  +|+|+..+. +. .....++|.+.+.+. +++++
T Consensus       147 ~~i~~~~l~~~l~~~~~~liDvR~~~e~~g~~~~~~~~ghIpgA--~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  224 (271)
T 1e0c_A          147 PTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGA--VNFEWTAAMDPSRALRIRTDIAGRLEELGITPDK  224 (271)
T ss_dssp             TBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTTC--EECCGGGGEEGGGTTEECTTHHHHHHHTTCCTTS
T ss_pred             ccccHHHHHHHhcCCCcEEEEcCChhhcCCccCCCCcCCcCCCc--eeccHHHhCCCCCCCCCHHHHHHHHHHcCCCCCC
Confidence            357999999988764 8899999999999        8999999  999997652 11 112224676667654 78999


Q ss_pred             eEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHhC-CCceec
Q 031752           97 RLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQN-GLKVKA  142 (153)
Q Consensus        97 ~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~-g~~~~~  142 (153)
                      +||+||++|.||..++..|..+||+||++|.||+.+|.+. |+|+++
T Consensus       225 ~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~~~~pv~~  271 (271)
T 1e0c_A          225 EIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVEL  271 (271)
T ss_dssp             EEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHHHTTCTTCCCBC
T ss_pred             CEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHHHHhcCCCCCCcC
Confidence            9999999999999999999999999999999999999998 998863

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1

Probab=99.87  E-value=2.4e-22  Score=141.37  Aligned_cols=108  Identities=14%  Similarity=0.236  Sum_probs=90.4

Q ss_pred             cCCcceeecHHHHHHHHhC-------CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHH-Hh---hc
Q 031752           24 SGAEVITVDVRAAKNLLES-------GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKV-RS---LC   92 (153)
Q Consensus        24 ~~~~~~~i~~~~~~~~~~~-------~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~-~~---~~   92 (153)
                      .......|+++++.+++++       +.+|||||++.||..||||||  +|+|+.           ++.+.. ..   +.
T Consensus        18 ~~~~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghIpgA--inip~~-----------~~~~~~~~~~~~~~   84 (161)
T 1c25_A           18 KHQDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGA--VNLHME-----------EEVEDFLLKKPIVP   84 (161)
T ss_dssp             SCTTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTC--EECCSH-----------HHHHHHTTTSCCCC
T ss_pred             CCCCcceeCHHHHHHHHhccccccCCCeEEEECCChHHccCCcccCc--EeCChh-----------HHHHHHHhhhhhcc
Confidence            4556789999999999975       478999999999999999999  999995           444433 21   13


Q ss_pred             cCCCeE--EEEeC-CCccHHHHHHHHHH----------CCccceeeccccHHHHHhCCCceecCC
Q 031752           93 KEEDRL--VVGCQ-SGARSLHATADLLG----------AGFKHVSNFGGGHMAWVQNGLKVKARE  144 (153)
Q Consensus        93 ~~~~~i--vi~c~-~g~~a~~~~~~L~~----------~G~~~v~~l~gG~~~w~~~g~~~~~~~  144 (153)
                      ++++++  |+||+ +|.|+..+++.|.+          .||++|++|.||+.+|.+++.|+..+.
T Consensus        85 ~~~~~ivvv~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~~W~~~~~~~~~~~  149 (161)
T 1c25_A           85 TDGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKCQSYCEPP  149 (161)
T ss_dssp             CTTSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHHHGGGEESS
T ss_pred             CCCCCeEEEEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHHHHHHHcccccCCC
Confidence            578886  57899 99999999999986          499999999999999999999998764

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.87  E-value=1.5e-21  Score=150.22  Aligned_cols=120  Identities=17%  Similarity=0.141  Sum_probs=96.2

Q ss_pred             cCCcceeecHHHHHHHHhC-----CCeEEecC---------ChhhhhcCCCCCcceeCccccccC-C----CCCCCC-hH
Q 031752           24 SGAEVITVDVRAAKNLLES-----GYGYLDVR---------TAEEFKEGHVDAAKIFNIPYMFNT-P----EGRVKN-PD   83 (153)
Q Consensus        24 ~~~~~~~i~~~~~~~~~~~-----~~~iIDvR---------~~~e~~~ghi~ga~~i~ip~~~~~-~----~~~~~~-~~   83 (153)
                      .......|+++++.+++++     +.+|||||         ++.||..||||||  +|||+..+. +    ...++. ..
T Consensus        17 ~~~~~~lIs~~~l~~~l~~~~~~~~~~ilDvR~~~~~~~~~~~~ey~~gHIpGA--i~i~~~~~~~~~~~~~~~lp~~~~   94 (302)
T 3olh_A           17 NLYFQSMVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGA--AFFDIDQCSDRTSPYDHMLPGAEH   94 (302)
T ss_dssp             ---CCCEECHHHHHHHHHCCCSSCCEEEEECCCCCCC--CCHHHHHHHSCCTTC--EECCTTTSSCSSCSSSSCCCCHHH
T ss_pred             ccCCCCccCHHHHHHHhcCcCCCCCEEEEEeecCCCccCcccHHHHhhCcCCCC--eEeCHHHhcCcCCCCCCCCCCHHH
Confidence            4445578999999999975     57899999         7899999999999  999986541 1    111222 36


Q ss_pred             HHHHHHhh-ccCCCeEEEEeCC---CccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCC
Q 031752           84 FLKKVRSL-CKEEDRLVVGCQS---GARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREK  145 (153)
Q Consensus        84 ~~~~~~~~-~~~~~~ivi~c~~---g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~  145 (153)
                      |.+.+.++ ++++++||+||++   +.+|.++++.|+.+||++|++|+||+.+|+++|+|+++..+
T Consensus        95 ~~~~~~~lgi~~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~~~  160 (302)
T 3olh_A           95 FAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLSSGKS  160 (302)
T ss_dssp             HHHHHHHTTCCSSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHSCCC-CCSCC
T ss_pred             HHHHHHHcCCCCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCHHHHHHcCCCcccCCC
Confidence            77788887 7899999999963   34699999999999999999999999999999999988753

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.87  E-value=4.3e-22  Score=151.30  Aligned_cols=112  Identities=21%  Similarity=0.333  Sum_probs=85.2

Q ss_pred             eecHHHHHHHHhC-CCeEEecCChhhh-----------hcCCCCCcceeCccccccCCCCCCCCh-HHHHHHHhh-ccCC
Q 031752           30 TVDVRAAKNLLES-GYGYLDVRTAEEF-----------KEGHVDAAKIFNIPYMFNTPEGRVKNP-DFLKKVRSL-CKEE   95 (153)
Q Consensus        30 ~i~~~~~~~~~~~-~~~iIDvR~~~e~-----------~~ghi~ga~~i~ip~~~~~~~~~~~~~-~~~~~~~~~-~~~~   95 (153)
                      .++++++.+++++ +.+|||||++.||           ..||||||  +|||+..+...+.+... ++.+.+... ++++
T Consensus       153 ~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~ghIpgA--~nip~~~~~~~~~~~~~~~l~~~~~~~~~~~~  230 (280)
T 1urh_A          153 VVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGA--LNVPWTELVREGELKTTDELDAIFFGRGVSYD  230 (280)
T ss_dssp             BCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSSCTTC--EECCGGGGBSSSSBCCHHHHHHHHHTTTCCSS
T ss_pred             EEcHHHHHHHhcCCCcEEEeCCchhhcccccCCCCCCCcCccCCCc--eEeeHHHhhcCCccCCHHHHHHHHHHcCCCCC
Confidence            4999999998874 5899999999999           68999999  99999877544444443 343444443 6899


Q ss_pred             CeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHh-CCCceecC
Q 031752           96 DRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQ-NGLKVKAR  143 (153)
Q Consensus        96 ~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~-~g~~~~~~  143 (153)
                      ++||+||++|.||..++..|..+||+||+.|.||+.+|.+ .++|+++.
T Consensus       231 ~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~Pv~~~  279 (280)
T 1urh_A          231 KPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEWGARADLPVEPV  279 (280)
T ss_dssp             SCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC------------
T ss_pred             CCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHHHhcCCCCCceec
Confidence            9999999999999999999999999999999999999987 49998753

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.87  E-value=1.9e-21  Score=148.99  Aligned_cols=118  Identities=20%  Similarity=0.207  Sum_probs=97.8

Q ss_pred             cceeecHHHHHHHHhC-----CCeEEecC--------ChhhhhcCCCCCcceeCccccccCCC-----CCCCC-hHHHHH
Q 031752           27 EVITVDVRAAKNLLES-----GYGYLDVR--------TAEEFKEGHVDAAKIFNIPYMFNTPE-----GRVKN-PDFLKK   87 (153)
Q Consensus        27 ~~~~i~~~~~~~~~~~-----~~~iIDvR--------~~~e~~~ghi~ga~~i~ip~~~~~~~-----~~~~~-~~~~~~   87 (153)
                      ....|+++++.+++++     +.+|||||        ++.+|..||||||  +|+|+..+...     ..++. .+|.+.
T Consensus         6 ~~~~is~~~l~~~l~~~~~~~~~~liDvR~~~~~~~~~~~ey~~gHIpGA--i~ip~~~l~~~~~~~~~~lp~~~~~~~~   83 (296)
T 1rhs_A            6 YRALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGA--SFFDIEECRDKASPYEVMLPSEAGFADY   83 (296)
T ss_dssp             CCSEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTC--EECCTTTSSCTTSSSSSCCCCHHHHHHH
T ss_pred             cCceeeHHHHHHHHhccccCCCeEEEEecccCcCCcchhhhHhhCcCCCC--EEeCHHHhcCCCCCCCCCCCCHHHHHHH
Confidence            3568999999999975     47899999        6899999999999  99998755221     12232 366667


Q ss_pred             HHhh-ccCCCeEEEEeCC--Ccc-HHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCCC
Q 031752           88 VRSL-CKEEDRLVVGCQS--GAR-SLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKP  146 (153)
Q Consensus        88 ~~~~-~~~~~~ivi~c~~--g~~-a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~  146 (153)
                      +.++ ++++++||+||++  |.+ +.++++.|+.+||++|++|.||+.+|+++|+|+++..+.
T Consensus        84 l~~lgi~~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~~~~  146 (296)
T 1rhs_A           84 VGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTSEPSR  146 (296)
T ss_dssp             HHHTTCCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCSCCC
T ss_pred             HHHcCCCCCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCHHHHHHcCCccccCCCC
Confidence            7766 7899999999998  776 789999999999999999999999999999999887543

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.87  E-value=1.2e-21  Score=150.04  Aligned_cols=115  Identities=18%  Similarity=0.353  Sum_probs=96.6

Q ss_pred             eeecHHHHHHHHhC-CCeEEecCChhhh------------hcCCCCCcceeCccccccC-CCCCCCCh-HHHHHHHhh-c
Q 031752           29 ITVDVRAAKNLLES-GYGYLDVRTAEEF------------KEGHVDAAKIFNIPYMFNT-PEGRVKNP-DFLKKVRSL-C   92 (153)
Q Consensus        29 ~~i~~~~~~~~~~~-~~~iIDvR~~~e~------------~~ghi~ga~~i~ip~~~~~-~~~~~~~~-~~~~~~~~~-~   92 (153)
                      ..++++++.+++++ +.+|||||++.||            ..||||||  +|||+..+. +.+.+... ++.+.+... +
T Consensus       160 ~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~~ghIpgA--~nip~~~l~~~~~~~~~~~~l~~~~~~~~~  237 (296)
T 1rhs_A          160 LLKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGS--VNMPFMNFLTEDGFEKSPEELRAMFEAKKV  237 (296)
T ss_dssp             GEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTC--EECCGGGGBCTTSCBCCHHHHHHHHHHTTC
T ss_pred             eEEcHHHHHHHhcCCCceEEeCCchhhcccccCCcccCCCcCccCCCC--EeecHHHhcCCCCcCCCHHHHHHHHHHcCC
Confidence            57899999998864 5899999999999            78999999  999998763 23334433 444445543 6


Q ss_pred             cCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHh-CCCceecCCC
Q 031752           93 KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQ-NGLKVKAREK  145 (153)
Q Consensus        93 ~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~-~g~~~~~~~~  145 (153)
                      +++++||+||++|.||..++..|..+||+||+.|.||+.+|.+ .++|++++..
T Consensus       238 ~~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~pv~~~~~  291 (296)
T 1rhs_A          238 DLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPETWVSQG  291 (296)
T ss_dssp             CTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHHHHHHSCGGGEEBTT
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHHHHhcCCCCCcccCCC
Confidence            8999999999999999999999999999999999999999998 7999988764

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.87  E-value=1.1e-21  Score=149.31  Aligned_cols=113  Identities=26%  Similarity=0.433  Sum_probs=94.7

Q ss_pred             eecHHHHHHHHh----CCCeEEecCChhhhh----------------cCCCCCcceeCccccccC-CCCCCCCh-HHHHH
Q 031752           30 TVDVRAAKNLLE----SGYGYLDVRTAEEFK----------------EGHVDAAKIFNIPYMFNT-PEGRVKNP-DFLKK   87 (153)
Q Consensus        30 ~i~~~~~~~~~~----~~~~iIDvR~~~e~~----------------~ghi~ga~~i~ip~~~~~-~~~~~~~~-~~~~~   87 (153)
                      .++++++.+.++    .+..|||||++.||.                .||||||  +|+|+..+. +.+.+.++ +|.+.
T Consensus       147 ~i~~~el~~~l~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~~~~~~ghIpgA--~~ip~~~~~~~~~~~~~~~~l~~~  224 (285)
T 1uar_A          147 RAYRDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGA--KNIPWAKAVNPDGTFKSAEELRAL  224 (285)
T ss_dssp             EECHHHHHHHHHHHHTTSEEEEECSCHHHHHTCC--------CCCSCCSBCTTC--EECCGGGGBCTTSCBCCHHHHHHH
T ss_pred             EEcHHHHHHHHhhcccCCCcEEEcCCccceeeeccccccccccccccCCcCCCc--cccCHHHhcCCCCcCCCHHHHHHH
Confidence            499999999884    446799999999997                7999999  999987663 33444444 44455


Q ss_pred             HHhh-ccCCCeEEEEeCCCccHHHHHHHHH-HCCccceeeccccHHHHH-hCCCceecCC
Q 031752           88 VRSL-CKEEDRLVVGCQSGARSLHATADLL-GAGFKHVSNFGGGHMAWV-QNGLKVKARE  144 (153)
Q Consensus        88 ~~~~-~~~~~~ivi~c~~g~~a~~~~~~L~-~~G~~~v~~l~gG~~~w~-~~g~~~~~~~  144 (153)
                      +.+. ++++++||+||++|.+|..+++.|. .+||++|++|+||+.+|. ..|+|++++.
T Consensus       225 ~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~~W~~~~g~pv~~g~  284 (285)
T 1uar_A          225 YEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPIAKGE  284 (285)
T ss_dssp             HGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTCCCBCSC
T ss_pred             HHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHHHHhcCCCCCcccCC
Confidence            5554 6899999999999999999999999 999999999999999998 7899998753

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.87  E-value=9.4e-22  Score=152.34  Aligned_cols=114  Identities=27%  Similarity=0.443  Sum_probs=95.5

Q ss_pred             eecHHHHHHHHhCCCeEEecCChhhhhc----------------CCCCCcceeCcccccc-CCCCCCCChHHHHHHHhhc
Q 031752           30 TVDVRAAKNLLESGYGYLDVRTAEEFKE----------------GHVDAAKIFNIPYMFN-TPEGRVKNPDFLKKVRSLC   92 (153)
Q Consensus        30 ~i~~~~~~~~~~~~~~iIDvR~~~e~~~----------------ghi~ga~~i~ip~~~~-~~~~~~~~~~~~~~~~~~~   92 (153)
                      .++++++.+.++++ +|||||++.||..                ||||||  +|+|+..+ .+++.+..++..+.....+
T Consensus       180 ~i~~~el~~~l~~~-~liDvR~~~e~~~~~~~~~~~~~~~~~~~GhIpGA--~niP~~~~~~~~g~~~~~~~l~~~~~~l  256 (318)
T 3hzu_A          180 RAFRDDVLAILGAQ-PLIDVRSPEEYTGKRTHMPDYPEEGALRAGHIPTA--VHIPWGKAADESGRFRSREELERLYDFI  256 (318)
T ss_dssp             BCCHHHHHHHTTTS-CEEECSCHHHHHTSCSSCTTSCSCSCSSCSBCTTC--EECCGGGGBCTTSCBCCHHHHHHHTTTC
T ss_pred             cccHHHHHHhhcCC-eEEecCCHHHhcccccCccccccccCCcCcCCCCe--eecCHHHhcCCCCcCCCHHHHHHHhcCC
Confidence            47899999988776 8999999999998                999999  99999765 4455555543333333336


Q ss_pred             cCCCeEEEEeCCCccHHHHHHHHHH-CCccceeeccccHHHHHh-CCCceecCCCC
Q 031752           93 KEEDRLVVGCQSGARSLHATADLLG-AGFKHVSNFGGGHMAWVQ-NGLKVKAREKP  146 (153)
Q Consensus        93 ~~~~~ivi~c~~g~~a~~~~~~L~~-~G~~~v~~l~gG~~~w~~-~g~~~~~~~~~  146 (153)
                      +++++||+||++|.||..++..|.+ +||++|+.|.||+.+|.+ .|+|++++..+
T Consensus       257 ~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~~~W~~~~g~Pv~~g~~~  312 (318)
T 3hzu_A          257 NPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWTEWGNAVRVPIVAGEEP  312 (318)
T ss_dssp             CTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHHHHHTTSTTCCCBCSSSC
T ss_pred             CCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcHHHHhcCCCCCcccCCCC
Confidence            8999999999999999999999997 999999999999999995 69999988643

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A

Probab=99.86  E-value=1.1e-21  Score=143.95  Aligned_cols=107  Identities=15%  Similarity=0.254  Sum_probs=89.8

Q ss_pred             CCcceeecHHHHHHHHhC-------CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHH-HHh--hc--
Q 031752           25 GAEVITVDVRAAKNLLES-------GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKK-VRS--LC--   92 (153)
Q Consensus        25 ~~~~~~i~~~~~~~~~~~-------~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~-~~~--~~--   92 (153)
                      ......|+++++.+++++       +.+|||||++.||..||||||  +|||+.           ++.+. +..  .+  
T Consensus        40 ~~~~~~Is~~el~~~l~~~~~~~~~~~~lIDvR~~~Ey~~gHIpGA--inip~~-----------~l~~~~~~~~~~l~~  106 (211)
T 1qb0_A           40 HQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTA--VNLPLE-----------RDAESFLLKSPIAPC  106 (211)
T ss_dssp             STTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTC--EECCSH-----------HHHHHHHHTTTCCCS
T ss_pred             cCCCCeeCHHHHHHHHhcccccCCCCEEEEECCCHHHHccCcCCCC--EECCch-----------HHHHHhhhhhhhccc
Confidence            456789999999999875       478999999999999999999  999995           44432 332  22  


Q ss_pred             cCCCeE--EEEeC-CCccHHHHHHHHHH----------CCccceeeccccHHHHHhCCCceecCC
Q 031752           93 KEEDRL--VVGCQ-SGARSLHATADLLG----------AGFKHVSNFGGGHMAWVQNGLKVKARE  144 (153)
Q Consensus        93 ~~~~~i--vi~c~-~g~~a~~~~~~L~~----------~G~~~v~~l~gG~~~w~~~g~~~~~~~  144 (153)
                      +++++|  |+||+ +|.++..+++.|.+          +||++|++|.||+.+|.++|.|+..+.
T Consensus       107 ~~d~~ivvVvyC~~sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~g~~~~~~~  171 (211)
T 1qb0_A          107 SLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQ  171 (211)
T ss_dssp             STTSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGGEESS
T ss_pred             cCCCCeEEEEECCCCCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHHHHHHHHCccccCCC
Confidence            378887  78899 99999999999986          699999999999999999999987654

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.86  E-value=7.7e-22  Score=149.65  Aligned_cols=116  Identities=15%  Similarity=0.213  Sum_probs=95.6

Q ss_pred             ceeecHHHHHHHHhC-CCeEEecCC-hhhhhcCCCCCcceeCccccccCC---CCCCCC-hHHHHHHHhh-ccCCCeEEE
Q 031752           28 VITVDVRAAKNLLES-GYGYLDVRT-AEEFKEGHVDAAKIFNIPYMFNTP---EGRVKN-PDFLKKVRSL-CKEEDRLVV  100 (153)
Q Consensus        28 ~~~i~~~~~~~~~~~-~~~iIDvR~-~~e~~~ghi~ga~~i~ip~~~~~~---~~~~~~-~~~~~~~~~~-~~~~~~ivi  100 (153)
                      ...|+++++.+++++ +.+|||||+ +.||..||||||  +|+|+.....   ...+.. .+|.+.+.++ ++++++||+
T Consensus         5 ~~~is~~~l~~~l~~~~~~liDvR~~~~ey~~ghIpgA--~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~vvv   82 (277)
T 3aay_A            5 DVLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGA--IKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVIL   82 (277)
T ss_dssp             HHEECHHHHHTTTTCTTEEEEEEESSSHHHHHCBSTTC--EEEETTTTTBCSSSSSBCCHHHHHHHHHHHTCCTTSEEEE
T ss_pred             CceEcHHHHHHHhCCCCEEEEEcCCChhhHhhCCCCCc--EEecccccccCCCCCCCCCHHHHHHHHHHcCCCCCCeEEE
Confidence            357999999998875 478999998 899999999999  9999864211   112222 3577777776 789999999


Q ss_pred             EeCCCc-cHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCC
Q 031752          101 GCQSGA-RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREK  145 (153)
Q Consensus       101 ~c~~g~-~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~  145 (153)
                      ||++|. ++.++++.|+.+||++|++|.||+.+|.++|+|+++..+
T Consensus        83 yc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~  128 (277)
T 3aay_A           83 YGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSDPV  128 (277)
T ss_dssp             ECSGGGHHHHHHHHHHHHTTCCSEEEETTHHHHHHHTTCCCBCCCC
T ss_pred             ECCCCCchHHHHHHHHHHcCCCcEEEecCCHHHHHHcCCccccCCC
Confidence            999875 689999999999999999999999999999999987754

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.86  E-value=1.2e-21  Score=161.08  Aligned_cols=107  Identities=18%  Similarity=0.262  Sum_probs=95.6

Q ss_pred             CcceeecHHHHHHHHhC--CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEEEEe
Q 031752           26 AEVITVDVRAAKNLLES--GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGC  102 (153)
Q Consensus        26 ~~~~~i~~~~~~~~~~~--~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivi~c  102 (153)
                      .....|+++++.+++++  +.+|||||++.||..||||||  +|||+.           +|...+.++ .+++++||+||
T Consensus         4 ~~~~~is~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgA--v~ip~~-----------~~~~~~~~l~~~~~~~iVvyc   70 (539)
T 1yt8_A            4 SQIAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFA--ANLPLS-----------RLELEIHARVPRRDTPITVYD   70 (539)
T ss_dssp             --CEEECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTC--EECCGG-----------GHHHHHHHHSCCTTSCEEEEC
T ss_pred             CcCcccCHHHHHHHHhCCCCeEEEECCCHHHHhcCcCCCC--EECCHH-----------HHHHHHHhhCCCCCCeEEEEE
Confidence            45788999999999874  489999999999999999999  999996           777777776 46799999999


Q ss_pred             CCCccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCC
Q 031752          103 QSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREK  145 (153)
Q Consensus       103 ~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~  145 (153)
                      ++|.+|.++++.|+..||+||++|.||+.+|+++|+|++++.+
T Consensus        71 ~~g~~s~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~~~  113 (539)
T 1yt8_A           71 DGEGLAPVAAQRLHDLGYSDVALLDGGLSGWRNAGGELFRDVN  113 (539)
T ss_dssp             SSSSHHHHHHHHHHHTTCSSEEEETTHHHHHHHTTCCCBCSSS
T ss_pred             CCCChHHHHHHHHHHcCCCceEEeCCCHHHHHhcCCCcccCCc
Confidence            9999999999999999999999999999999999999987653

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}

Probab=99.86  E-value=9.2e-22  Score=137.48  Aligned_cols=108  Identities=19%  Similarity=0.253  Sum_probs=82.7

Q ss_pred             CcceeecHHHHHHHHhC-----CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCC-eE
Q 031752           26 AEVITVDVRAAKNLLES-----GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEED-RL   98 (153)
Q Consensus        26 ~~~~~i~~~~~~~~~~~-----~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~i   98 (153)
                      ..+..|+++++.+++++     +.+|||||++ ||..||||||  +|||+..+      .. .....+... .++++ .|
T Consensus         2 ~~~~~Is~~el~~~l~~~~~~~~~~lIDvR~~-ey~~gHIpGA--inip~~~l------~~-~~~~~l~~~l~~~~~~~v   71 (152)
T 2j6p_A            2 TNYTYIKPEELVELLDNPDSLVKAAVIDCRDS-DRDCGFIVNS--INMPTISC------TE-EMYEKLAKTLFEEKKELA   71 (152)
T ss_dssp             -CCEEECHHHHHHHHHSHHHHHTEEEEECCST-TGGGCBCTTC--EECCTTTC------CH-HHHHHHHHHHHHTTCCEE
T ss_pred             CCcCccCHHHHHHHHhCCCCCCCEEEEEcCcH-HhCcCcCCCc--EECChhHh------hH-HHHHHHHHHhcccCCCEE
Confidence            45788999999999875     5789999999 9999999999  99999532      11 122222222 22344 57


Q ss_pred             EEEe-CCCccHHHHH----HHHHHCCc--cceeeccccHHHHHhCCCceecC
Q 031752           99 VVGC-QSGARSLHAT----ADLLGAGF--KHVSNFGGGHMAWVQNGLKVKAR  143 (153)
Q Consensus        99 vi~c-~~g~~a~~~~----~~L~~~G~--~~v~~l~gG~~~w~~~g~~~~~~  143 (153)
                      |+|| .+|.|+..++    +.|.+.||  .+|++|.||+.+|.++|.++..+
T Consensus        72 V~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~~W~~~g~~~~~~  123 (152)
T 2j6p_A           72 VFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEAFYHMYGDVRPD  123 (152)
T ss_dssp             EEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHHHHHHHHTTTCGG
T ss_pred             EEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHcCCCCCC
Confidence            7779 6999988887    77888997  58999999999999998877653

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A

Probab=99.86  E-value=4.6e-22  Score=138.82  Aligned_cols=116  Identities=19%  Similarity=0.153  Sum_probs=83.0

Q ss_pred             ceeecHHHHHHHHhC---CCeEEecCChhhhhcCCCCCcceeCccccccC-C---CCCCCChHHH-HHH-Hhh-ccCCCe
Q 031752           28 VITVDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNT-P---EGRVKNPDFL-KKV-RSL-CKEEDR   97 (153)
Q Consensus        28 ~~~i~~~~~~~~~~~---~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~-~---~~~~~~~~~~-~~~-~~~-~~~~~~   97 (153)
                      .+.|+++++.+++++   +.+|||||++.||..||||||  +|||+..+. .   .+.+...++. ... .++ ++++++
T Consensus         3 ~~~Is~~~l~~~l~~~~~~~~iiDvR~~~ey~~gHIpgA--inip~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~   80 (153)
T 2vsw_A            3 GTQIVTERLVALLESGTEKVLLIDSRPFVEYNTSHILEA--ININCSKLMKRRLQQDKVLITELIQHSAKHKVDIDCSQK   80 (153)
T ss_dssp             CEEECHHHHHHHHTSTTCCEEEEECSCHHHHHHCEETTC--EECCCCHHHHHHHHTTSSCHHHHHHHSCSSCCCCCTTSE
T ss_pred             CccccHHHHHHHHhcCCCCEEEEECCCHHHhccCccCCC--eeeChHHHHHhhhhcCCcCHHHhcCchhhhhhccCCCCe
Confidence            468999999999973   478999999999999999999  999996320 0   0000000110 000 011 478899


Q ss_pred             EEEEeCCCccHHHH------HHHHH--HCCccceeeccccHHHHHhCCCceecCCC
Q 031752           98 LVVGCQSGARSLHA------TADLL--GAGFKHVSNFGGGHMAWVQNGLKVKAREK  145 (153)
Q Consensus        98 ivi~c~~g~~a~~~------~~~L~--~~G~~~v~~l~gG~~~w~~~g~~~~~~~~  145 (153)
                      ||+||++|.++..+      ++.|.  ..||++|++|.||+.+|.+.+.++..+.+
T Consensus        81 iVvyc~~g~~s~~a~~~~~~~~~L~~l~~G~~~v~~L~GG~~~W~~~~~~~~~~~~  136 (153)
T 2vsw_A           81 VVVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSRCFPGLCEGKS  136 (153)
T ss_dssp             EEEECSSCCCGGGSCTTSHHHHHHHHHHHHCSCEEEETTHHHHHHHHCGGGEEC--
T ss_pred             EEEEeCCCCcccccccchHHHHHHHHHHhCCCcEEEEeChHHHHHHhChhhhcCCC
Confidence            99999999887655      46666  34999999999999999998777776553

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A

Probab=99.86  E-value=1.4e-21  Score=139.31  Aligned_cols=108  Identities=14%  Similarity=0.222  Sum_probs=86.9

Q ss_pred             cCCcceeecHHHHHHHHhC-------CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHH-HHh--hc-
Q 031752           24 SGAEVITVDVRAAKNLLES-------GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKK-VRS--LC-   92 (153)
Q Consensus        24 ~~~~~~~i~~~~~~~~~~~-------~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~-~~~--~~-   92 (153)
                      .......|+++++.+++++       +.+|||||++.||..||||||  +|+|+.           ++.+. +..  ++ 
T Consensus        19 ~~~~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~ey~~ghIpgA--inip~~-----------~l~~~~~~~~~~~~   85 (175)
T 2a2k_A           19 KHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTA--VNLPLE-----------RDAESFLLKSPIAP   85 (175)
T ss_dssp             SSTTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTC--EECCSH-----------HHHHHHHHSSCCCC
T ss_pred             cCCCCceeCHHHHHHHHhcccccCCCCEEEEECCCHHHHcCCcCCCc--EECChh-----------HHHHHhhhhhhhcc
Confidence            3456789999999999874       478999999999999999999  999995           44333 222  22 


Q ss_pred             -cCCCeEEE--EeC-CCccHHHHHHHHHH----------CCccceeeccccHHHHHhCCCceecCC
Q 031752           93 -KEEDRLVV--GCQ-SGARSLHATADLLG----------AGFKHVSNFGGGHMAWVQNGLKVKARE  144 (153)
Q Consensus        93 -~~~~~ivi--~c~-~g~~a~~~~~~L~~----------~G~~~v~~l~gG~~~w~~~g~~~~~~~  144 (153)
                       +++++||+  ||+ +|.||..+++.|++          +||++|++|.||+.+|.+++.|+..+.
T Consensus        86 ~~~~~~ivvv~yC~~~g~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~~~~~~~~~  151 (175)
T 2a2k_A           86 CSLDKRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEPQ  151 (175)
T ss_dssp             ----CEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGGEESS
T ss_pred             ccCCCCeEEEEECCCCCCccHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCHHHHHHHCccccCCC
Confidence             37888855  599 89999999999985          599999999999999999999987654

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.86  E-value=5.3e-22  Score=151.07  Aligned_cols=117  Identities=20%  Similarity=0.250  Sum_probs=96.9

Q ss_pred             ceeecHHHHHHHHhC-CCeEEecC-ChhhhhcCCCCCcceeCcccccc-C-C-CCCCCC-hHHHHHHHhh-ccCCCeEEE
Q 031752           28 VITVDVRAAKNLLES-GYGYLDVR-TAEEFKEGHVDAAKIFNIPYMFN-T-P-EGRVKN-PDFLKKVRSL-CKEEDRLVV  100 (153)
Q Consensus        28 ~~~i~~~~~~~~~~~-~~~iIDvR-~~~e~~~ghi~ga~~i~ip~~~~-~-~-~~~~~~-~~~~~~~~~~-~~~~~~ivi  100 (153)
                      ...|+++++.+++++ +.+||||| ++.+|..||||||  +|+|+... . + ...+.. .+|.+.+.++ ++++++||+
T Consensus         7 ~~~is~~~l~~~l~~~~~~liDvR~~~~e~~~ghIpgA--~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~ivv   84 (285)
T 1uar_A            7 EVLVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGA--QKIDWQRDFWDPVVRDFISEEEFAKLMERLGISNDTTVVL   84 (285)
T ss_dssp             GGEECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTC--EEECHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEE
T ss_pred             CceEcHHHHHHhcCCCCEEEEEcCCCcchhhcCcCCCC--EECCchhhccCCcccCCCCHHHHHHHHHHcCCCCCCeEEE
Confidence            467999999998876 47899999 7899999999999  99998632 1 1 112222 2577777776 789999999


Q ss_pred             EeCCCc-cHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCCC
Q 031752          101 GCQSGA-RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKP  146 (153)
Q Consensus       101 ~c~~g~-~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~  146 (153)
                      ||++|. +|.++++.|+.+||++|++|.||+.+|.++|+|++++.+.
T Consensus        85 yc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~  131 (285)
T 1uar_A           85 YGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLTTEVPS  131 (285)
T ss_dssp             ECHHHHHHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCBCCCCC
T ss_pred             ECCCCCccHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCcccCCCCc
Confidence            999887 7999999999999999999999999999999999876543

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}

Probab=99.86  E-value=2.7e-21  Score=142.30  Aligned_cols=106  Identities=17%  Similarity=0.262  Sum_probs=85.1

Q ss_pred             CCcceeecHHHHHHHHhCC-------CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChH-HHHHHHhh----c
Q 031752           25 GAEVITVDVRAAKNLLESG-------YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPD-FLKKVRSL----C   92 (153)
Q Consensus        25 ~~~~~~i~~~~~~~~~~~~-------~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~-~~~~~~~~----~   92 (153)
                      ...+..|+++++.++++++       ++|||||++.||..||||||  +|||..           + +.+.+...    .
T Consensus        53 ~~~~~~Is~~eL~~~l~~~~~~~~~~~~lIDVR~~~Ey~~GHIpGA--inIP~~-----------~~l~~~l~~~~~~~~  119 (216)
T 3op3_A           53 HQDLKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGA--LNLYSQ-----------EELFNFFLKKPIVPL  119 (216)
T ss_dssp             CSSSEEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTSEETTC--EECCSH-----------HHHHHHHTSSCCCCS
T ss_pred             CCCCCEeCHHHHHHHHhCCCccccCCEEEEEeCcHHHHhcCCccCC--EECChH-----------HHHHHHHhhcccccc
Confidence            4457899999999999753       68999999999999999999  999995           3 33343221    2


Q ss_pred             cCCCe--EEEEeC-CCccHHHHHHHHHHC----------CccceeeccccHHHHHhCCCceecC
Q 031752           93 KEEDR--LVVGCQ-SGARSLHATADLLGA----------GFKHVSNFGGGHMAWVQNGLKVKAR  143 (153)
Q Consensus        93 ~~~~~--ivi~c~-~g~~a~~~~~~L~~~----------G~~~v~~l~gG~~~w~~~g~~~~~~  143 (153)
                      +++++  ||+||. +|.|+..+++.|+..          ||++|++|.||+.+|.++..++..+
T Consensus       120 ~~~k~~~VVvyC~~SG~Rs~~aa~~L~~~~~~~~~y~~lGf~~V~~L~GG~~aW~~~~~~lcep  183 (216)
T 3op3_A          120 DTQKRIIIVFHCEFSSERGPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDFFPEYMELCEP  183 (216)
T ss_dssp             STTSEEEEEEECCC--CCHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGGEES
T ss_pred             ccCCCCEEEEEeCCCChHHHHHHHHHHHcCcccccccccCCCcEEEECCcHHHHHHhCcccccC
Confidence            33454  999999 999999999999876          8999999999999999986666554

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.86  E-value=2.1e-21  Score=147.20  Aligned_cols=110  Identities=22%  Similarity=0.364  Sum_probs=92.1

Q ss_pred             ecHHHHHHHHhCCCeEEecCChhhhhc----------------CCCCCcceeCcccccc-CCCCCCCCh-HHHHHHHhh-
Q 031752           31 VDVRAAKNLLESGYGYLDVRTAEEFKE----------------GHVDAAKIFNIPYMFN-TPEGRVKNP-DFLKKVRSL-   91 (153)
Q Consensus        31 i~~~~~~~~~~~~~~iIDvR~~~e~~~----------------ghi~ga~~i~ip~~~~-~~~~~~~~~-~~~~~~~~~-   91 (153)
                      ++++++.+.++++. |||||++.||..                ||||||  +|+|+..+ ...+.+..+ ++.+.+.+. 
T Consensus       146 ~~~~el~~~~~~~~-liDvR~~~e~~~~~~~~~~~~~~~~~~~ghIpgA--~~ip~~~~~~~~~~~~~~~~l~~~~~~~~  222 (277)
T 3aay_A          146 AFRDEVLAAINVKN-LIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGA--INVPWSRAANEDGTFKSDEELAKLYADAG  222 (277)
T ss_dssp             ECHHHHHHTTTTSE-EEECSCHHHHHTSCCC-----CCCCSCCSBCTTC--EECCGGGGBCTTSCBCCHHHHHHHHHHHT
T ss_pred             cCHHHHHHhcCCCC-EEEeCChHHeeeeecccccccccccccCCcCCCc--eecCHHHhcCCCCcCCCHHHHHHHHHHcC
Confidence            77899988887655 999999999985                999999  99998755 333444443 455556554 


Q ss_pred             ccCCCeEEEEeCCCccHHHHHHHHHH-CCccceeeccccHHHHHh-CCCceecC
Q 031752           92 CKEEDRLVVGCQSGARSLHATADLLG-AGFKHVSNFGGGHMAWVQ-NGLKVKAR  143 (153)
Q Consensus        92 ~~~~~~ivi~c~~g~~a~~~~~~L~~-~G~~~v~~l~gG~~~w~~-~g~~~~~~  143 (153)
                      ++++++||+||++|.+|..++..|.+ +||+||++|+||+.+|.+ .|+|++++
T Consensus       223 ~~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~~W~~~~g~pv~~g  276 (277)
T 3aay_A          223 LDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIELG  276 (277)
T ss_dssp             CCTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTCCCBCC
T ss_pred             CCCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchHHHHhcCCCCCCccC
Confidence            78999999999999999999999996 999999999999999998 89999864

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.86  E-value=1.8e-21  Score=149.72  Aligned_cols=110  Identities=24%  Similarity=0.378  Sum_probs=92.6

Q ss_pred             eeecHHHHHHHHhC-CCeEEecCChhhh-----------hcCCCCCcceeCcccccc-CCCCCCCCh-HHHHHHHhh-cc
Q 031752           29 ITVDVRAAKNLLES-GYGYLDVRTAEEF-----------KEGHVDAAKIFNIPYMFN-TPEGRVKNP-DFLKKVRSL-CK   93 (153)
Q Consensus        29 ~~i~~~~~~~~~~~-~~~iIDvR~~~e~-----------~~ghi~ga~~i~ip~~~~-~~~~~~~~~-~~~~~~~~~-~~   93 (153)
                      ..++++++.+.+++ +.+|||||++.||           ..||||||  +|+|+..+ ...+.+..+ ++.+.+.+. ++
T Consensus       175 ~~i~~~e~~~~~~~~~~~liDvR~~~ef~G~~~~p~~~~~~GhIpGA--iniP~~~l~~~~~~~~~~~~l~~~~~~~~~~  252 (302)
T 3olh_A          175 FIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGT--VNIPFTDFLSQEGLEKSPEEIRHLFQEKKVD  252 (302)
T ss_dssp             GEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSTTCCCCCCTTC--EECCGGGGBCSSSCBCCHHHHHHHHHHTTCC
T ss_pred             ceecHHHHHHhhcCCCcEEEecCCHHHccccccCCCcCCcCccCCCc--eecCHHHhcCCCCccCCHHHHHHHHHhcCCC
Confidence            35889999888864 5899999999999           78999999  99999876 333444443 555555554 78


Q ss_pred             CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHhCCCce
Q 031752           94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKV  140 (153)
Q Consensus        94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~  140 (153)
                      ++++||+||++|.||..++..|..+||++|++|+||+.+|.+++.|.
T Consensus       253 ~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~~W~~~~~P~  299 (302)
T 3olh_A          253 LSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPE  299 (302)
T ss_dssp             TTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHHHHHHHHCCC
T ss_pred             CCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHHHHhhccCCC
Confidence            89999999999999999999999999999999999999999988764

>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}

Probab=99.85  E-value=2.1e-21  Score=146.63  Aligned_cols=102  Identities=20%  Similarity=0.269  Sum_probs=87.4

Q ss_pred             CcceeecHHHHHHHHhCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh--ccCCCeEEEEe
Q 031752           26 AEVITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGC  102 (153)
Q Consensus        26 ~~~~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivi~c  102 (153)
                      .....|+++++.++++++ .+|||||++.||..||||||  +|+|+..+.        ++.+++.+.  .+++++||+||
T Consensus       119 ~~~~~Is~~el~~ll~~~~~vlIDVR~~~Ey~~GHIpGA--iniP~~~~~--------~~~~~l~~~l~~~kdk~IVvyC  188 (265)
T 4f67_A          119 NAGTYLSPEEWHQFIQDPNVILLDTRNDYEYELGTFKNA--INPDIENFR--------EFPDYVQRNLIDKKDKKIAMFC  188 (265)
T ss_dssp             CTTCEECHHHHHHHTTCTTSEEEECSCHHHHHHEEETTC--BCCCCSSGG--------GHHHHHHHHTGGGTTSCEEEEC
T ss_pred             CCCceECHHHHHHHhcCCCeEEEEeCCchHhhcCcCCCC--EeCCHHHHH--------hhHHHHHHhhhhCCCCeEEEEe
Confidence            346789999999999764 89999999999999999999  999985331        444444432  47899999999


Q ss_pred             CCCccHHHHHHHHHHCCccceeeccccHHHHHhCC
Q 031752          103 QSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNG  137 (153)
Q Consensus       103 ~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g  137 (153)
                      .+|.||..+++.|.+.||+||+.|.||+.+|.++.
T Consensus       189 ~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~aW~~~~  223 (265)
T 4f67_A          189 TGGIRCEKTTAYMKELGFEHVYQLHDGILNYLESI  223 (265)
T ss_dssp             SSSHHHHHHHHHHHHHTCSSEEEETTHHHHHHHHS
T ss_pred             CCChHHHHHHHHHHHcCCCCEEEecCHHHHHHHhc
Confidence            99999999999999999999999999999999763

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.85  E-value=3.1e-21  Score=152.35  Aligned_cols=114  Identities=18%  Similarity=0.167  Sum_probs=95.8

Q ss_pred             ceeecHHHHHHHHhCCCeEEecCC--------hhhhhcCCCCCcceeCccccc-cCC-------CCCCCC-hHHHHHHHh
Q 031752           28 VITVDVRAAKNLLESGYGYLDVRT--------AEEFKEGHVDAAKIFNIPYMF-NTP-------EGRVKN-PDFLKKVRS   90 (153)
Q Consensus        28 ~~~i~~~~~~~~~~~~~~iIDvR~--------~~e~~~ghi~ga~~i~ip~~~-~~~-------~~~~~~-~~~~~~~~~   90 (153)
                      ...|+++++.+++++ .+|||||+        +.||..||||||  +|+|+.. +..       ...++. .+|.+.+.+
T Consensus        13 ~~~Is~~el~~~l~~-~~iIDvR~~~~~~~~~~~ey~~gHIpGA--i~ip~~~~l~~~~~~~~~~~~lp~~~~f~~~l~~   89 (373)
T 1okg_A           13 KVFLDPSEVADHLAE-YRIVDCRYSLKIKDHGSIQYAKEHVKSA--IRADVDTNLSKLVPTSTARHPLPPXAEFIDWCMA   89 (373)
T ss_dssp             CCEECHHHHTTCGGG-SEEEECCCCSSSTTTTTTHHHHCEETTC--EECCTTTTSCCCCTTCCCSSCCCCHHHHHHHHHH
T ss_pred             CcEEcHHHHHHHcCC-cEEEEecCCccccccchhHHhhCcCCCC--EEeCchhhhhcccccCCccccCCCHHHHHHHHHH
Confidence            578999999998877 89999998        699999999999  9999875 421       122232 367777776


Q ss_pred             h-ccCCCeEEEEe-CCCccHH-HHHHHHHHCCccceeeccccHHHHHhCCCceecCCC
Q 031752           91 L-CKEEDRLVVGC-QSGARSL-HATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREK  145 (153)
Q Consensus        91 ~-~~~~~~ivi~c-~~g~~a~-~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~  145 (153)
                      . ++++++||+|| .+|.++. ++++.|+.+|| +|++|+||+.+|+++|+|++++.+
T Consensus        90 ~gi~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~-~V~~L~GG~~aW~~~g~pv~~~~~  146 (373)
T 1okg_A           90 NGMAGELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLEMESGEP  146 (373)
T ss_dssp             TTCSSSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCCEECSCC
T ss_pred             cCCCCCCeEEEEeCCCCchHHHHHHHHHHHcCC-eEEEeCCCHHHHHhhcCCcccCCC
Confidence            6 78999999999 6787876 99999999999 999999999999999999987754

>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}

Probab=99.85  E-value=2.6e-21  Score=132.73  Aligned_cols=109  Identities=17%  Similarity=0.171  Sum_probs=78.8

Q ss_pred             eecHHHHHH--------HHhC-CCeEEecCChhhhhcCCCCCcceeCccccccCC-----CCCCCChHHHHHHHhh--c-
Q 031752           30 TVDVRAAKN--------LLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTP-----EGRVKNPDFLKKVRSL--C-   92 (153)
Q Consensus        30 ~i~~~~~~~--------~~~~-~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~-----~~~~~~~~~~~~~~~~--~-   92 (153)
                      .|+++++.+        .+++ +.+|||||++.||..||||||  +|+|+..+..     .+..   .+...+...  . 
T Consensus         2 ~Is~~~l~~~l~~~~~~~l~~~~~~iiDvR~~~e~~~ghIpgA--~~ip~~~~~~~~~~~~~~~---~~~~~~~~~~~~~   76 (142)
T 2ouc_A            2 IIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGA--VHINCADKISRRRLQQGKI---TVLDLISCREGKD   76 (142)
T ss_dssp             EECHHHHHHHHHC----------CEEEECSCHHHHHHEEETTC--EECCCSSHHHHHHHHTTSS---CHHHHHHTTSCTT
T ss_pred             ccCHHHHHHHHHhcccccCCCCCCEEEEeCCHHHhhhhhccCc--cccCccHHHHHHHhhcCCc---chhhhCCChhhhH
Confidence            588999988        5544 489999999999999999999  9999863210     0000   011111000  0 


Q ss_pred             ----cCCCeEEEEeCCCccH---------HHHHHHHHHCCccceeeccccHHHHHhCCCceecCC
Q 031752           93 ----KEEDRLVVGCQSGARS---------LHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKARE  144 (153)
Q Consensus        93 ----~~~~~ivi~c~~g~~a---------~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~  144 (153)
                          .++++||+||++|.++         ..++..|...|| +|++|.||+.+|.++|.++.++.
T Consensus        77 ~~~~~~~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~-~v~~l~GG~~~w~~~g~~~~~~~  140 (142)
T 2ouc_A           77 SFKRIFSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQNHENLCDNS  140 (142)
T ss_dssp             HHHHHHHSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTC-CCEEETTHHHHHTTTCGGGEEEC
T ss_pred             HHhccCCCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCC-cEEEEccCHHHHHHHCHHhhccc
Confidence                0278999999999875         457888999999 99999999999999999998765

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.84  E-value=1.1e-20  Score=151.24  Aligned_cols=117  Identities=23%  Similarity=0.348  Sum_probs=95.7

Q ss_pred             eecHHHHHHHHhC-CCeEEecCChhhh-----------hcCCCCCcceeCcccc-------cc-CCCCCCCCh-HHHHHH
Q 031752           30 TVDVRAAKNLLES-GYGYLDVRTAEEF-----------KEGHVDAAKIFNIPYM-------FN-TPEGRVKNP-DFLKKV   88 (153)
Q Consensus        30 ~i~~~~~~~~~~~-~~~iIDvR~~~e~-----------~~ghi~ga~~i~ip~~-------~~-~~~~~~~~~-~~~~~~   88 (153)
                      .++++++.+++++ +.+|||||++.||           ..||||||  +|+|+.       .+ ++++.+..+ ++.+.+
T Consensus       273 ~i~~~e~~~~l~~~~~~liDvR~~~e~~G~~~~~~~~~~~GhIpgA--i~ip~~~~~~~~~~~~~~~~~~~~~~~l~~~~  350 (423)
T 2wlr_A          273 MLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGA--RWGHAGSDSTHMEDFHNPDGTMRSADDITAMW  350 (423)
T ss_dssp             EECHHHHHTTTTCSSEEEEECSCHHHHHTSCCSSTTCCCCSEETTC--EECCCCSSTTCCGGGBCTTSSBCCHHHHHHHH
T ss_pred             eecHHHHHHHhcCCCceEEecCchhheeeeccCCCCCCcCCCCCCc--cccccccccccHHHHcCCCCcCCCHHHHHHHH
Confidence            4889999888875 4789999999999           78999999  988875       11 333444443 454555


Q ss_pred             Hhh-ccCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHh-CCCceecCCCCCC
Q 031752           89 RSL-CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQ-NGLKVKAREKPAD  148 (153)
Q Consensus        89 ~~~-~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~-~g~~~~~~~~~~~  148 (153)
                      ... ++++++||+||++|.||..++..|..+||+||+.|.||+.+|.+ .++|++++.+++.
T Consensus       351 ~~~~~~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~~~W~~~~~~Pv~~~~~~~~  412 (423)
T 2wlr_A          351 KAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWYEWSSDPKNPVATGERGPD  412 (423)
T ss_dssp             HTTTCCTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHHHHHTTSTTSCEECSSCCC-
T ss_pred             HHcCCCCCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccHHHHhcCCCCCcccCCCCCC
Confidence            433 68999999999999999999999999999999999999999998 8999998876554

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.83  E-value=5.6e-21  Score=141.50  Aligned_cols=98  Identities=29%  Similarity=0.380  Sum_probs=82.3

Q ss_pred             eecHHHHHHHHhCCCeEEecCChhhhhc----------CCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeE
Q 031752           30 TVDVRAAKNLLESGYGYLDVRTAEEFKE----------GHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRL   98 (153)
Q Consensus        30 ~i~~~~~~~~~~~~~~iIDvR~~~e~~~----------ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i   98 (153)
                      .++++++.+    +.+|||||++.||..          ||||||  +|+|+..+....     +   .+.+. ++++++|
T Consensus       122 ~i~~~e~~~----~~~liDvR~~~e~~~~~~~~~~~~~ghIpgA--~~ip~~~~~~~~-----e---~~~~~~~~~~~~i  187 (230)
T 2eg4_A          122 LLTADEAAR----HPLLLDVRSPEEFQGKVHPPCCPRGGRIPGS--KNAPLELFLSPE-----G---LLERLGLQPGQEV  187 (230)
T ss_dssp             BCCHHHHHT----CSCEEECSCHHHHTTSCCCTTSSSCCBCTTC--EECCGGGGGCCT-----T---HHHHHTCCTTCEE
T ss_pred             eeCHHHHhh----CCeEEeCCCHHHcCcccCCCCCccCCCCCCc--EEcCHHHhCChH-----H---HHHhcCCCCCCCE
Confidence            477777765    678999999999999          999999  999997552211     1   22222 5889999


Q ss_pred             EEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHhCCCceec
Q 031752           99 VVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA  142 (153)
Q Consensus        99 vi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~  142 (153)
                      |+||++|.+|..++..|+++| .+|++|.||+.+|.++|+|+++
T Consensus       188 v~~C~~G~rs~~a~~~L~~~G-~~v~~~~Gg~~~W~~~g~p~~~  230 (230)
T 2eg4_A          188 GVYCHSGARSAVAFFVLRSLG-VRARNYLGSMHEWLQEGLPTEP  230 (230)
T ss_dssp             EEECSSSHHHHHHHHHHHHTT-CEEEECSSHHHHHHHTTCCCBC
T ss_pred             EEEcCChHHHHHHHHHHHHcC-CCcEEecCcHHHHhhcCCCCCC
Confidence            999999999999999999999 9999999999999999999863

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.83  E-value=1.4e-20  Score=154.87  Aligned_cols=107  Identities=23%  Similarity=0.321  Sum_probs=96.4

Q ss_pred             cceeecHHHHHHHHhC-CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCC
Q 031752           27 EVITVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSG  105 (153)
Q Consensus        27 ~~~~i~~~~~~~~~~~-~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g  105 (153)
                      ....++++++.+++++ +.+|||||++.||..||||||  +|+|..           ++.+.+.++ +++++||+||++|
T Consensus       375 ~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgA--~~ip~~-----------~l~~~l~~l-~~~~~ivv~C~sG  440 (539)
T 1yt8_A          375 RADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGA--AWVLRS-----------QLKQALERL-GTAERYVLTCGSS  440 (539)
T ss_dssp             CCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTC--EECCGG-----------GHHHHHHHH-CCCSEEEEECSSS
T ss_pred             cCCccCHHHHHHHhcCCCeEEEEeCCHHHhhcCcCCCc--hhCCHH-----------HHHHHHHhC-CCCCeEEEEeCCC
Confidence            4578999999999876 478999999999999999999  999985           676766654 8899999999999


Q ss_pred             ccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCCCC
Q 031752          106 ARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKPA  147 (153)
Q Consensus       106 ~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~~  147 (153)
                      .+|..++..|+.+||.+|++|.||+.+|.++|+|++++.++.
T Consensus       441 ~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~pv~~~~~~~  482 (539)
T 1yt8_A          441 LLARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTEDGESLL  482 (539)
T ss_dssp             HHHHHHHHHHHHHHCSCEEEETTHHHHHHHTTCCCBCSSCCB
T ss_pred             hHHHHHHHHHHHcCCCCEEEeCCcHHHHHhCCCCcccCCCCC
Confidence            999999999999999999999999999999999999876554

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.83  E-value=5.6e-21  Score=154.76  Aligned_cols=101  Identities=30%  Similarity=0.490  Sum_probs=90.0

Q ss_pred             ceeecHHHHHHHHhC-CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCc
Q 031752           28 VITVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGA  106 (153)
Q Consensus        28 ~~~i~~~~~~~~~~~-~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~  106 (153)
                      ...++++++.+.+++ +.+|||||++.||..||||||  +|+|+.           ++.+.+.. ++++++||+||++|.
T Consensus       373 ~~~i~~~~l~~~~~~~~~~lvDvR~~~e~~~ghIpgA--~~ip~~-----------~l~~~~~~-l~~~~~vvv~C~~G~  438 (474)
T 3tp9_A          373 YANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQA--HHIPLS-----------KLAAHIHD-VPRDGSVCVYCRTGG  438 (474)
T ss_dssp             CEEECHHHHHHTTTTTCCEEEECSCHHHHHHCBCTTC--EECCHH-----------HHTTTGGG-SCSSSCEEEECSSSH
T ss_pred             ccccCHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCC--EECCHH-----------HHHHHHhc-CCCCCEEEEECCCCH
Confidence            467999999998875 589999999999999999999  999996           44444443 588999999999999


Q ss_pred             cHHHHHHHHHHCCccceeeccccHHHHHhCCCceec
Q 031752          107 RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA  142 (153)
Q Consensus       107 ~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~  142 (153)
                      +|..++..|+.+||++|+.|.||+.+|.++|+|+++
T Consensus       439 ra~~a~~~L~~~G~~~v~~~~Gg~~~W~~~g~p~~~  474 (474)
T 3tp9_A          439 RSAIAASLLRAHGVGDVRNMVGGYEAWRGKGFPVEA  474 (474)
T ss_dssp             HHHHHHHHHHHHTCSSEEEETTHHHHHHHTTCCCBC
T ss_pred             HHHHHHHHHHHcCCCCEEEecChHHHHHhCCCCCCC
Confidence            999999999999999999999999999999999864

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*

Probab=99.83  E-value=3.5e-21  Score=136.81  Aligned_cols=118  Identities=15%  Similarity=0.193  Sum_probs=82.6

Q ss_pred             hhhcCCcceeecHHHHHHHHhC--------CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-
Q 031752           21 CRSSGAEVITVDVRAAKNLLES--------GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-   91 (153)
Q Consensus        21 ~~~~~~~~~~i~~~~~~~~~~~--------~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-   91 (153)
                      +......+..|+++++.+++++        +.+|||||+ .||..||||||  +|||+..+..... ..+++.+.+... 
T Consensus        23 ~~~~~~~~~~Is~~eL~~~l~~~~~~~~~~~~~iIDVR~-~Ey~~GHIpGA--iniP~~~l~~~~~-~l~~l~~~~~~~~   98 (169)
T 3f4a_A           23 DSYSITNVKYLDPTELHRWMQEGHTTTLREPFQVVDVRG-SDYMGGHIKDG--WHYAYSRLKQDPE-YLRELKHRLLEKQ   98 (169)
T ss_dssp             ---CCCSEEEECHHHHHHHHHHTSCTTTCCCEEEEECCS-TTCTTCEETTC--EECCHHHHHHCHH-HHHHHHHHHHHHH
T ss_pred             hhcccCCCcEeCHHHHHHHHhcCCccCcCCCEEEEECCc-hHHccCcCCCC--EECCHHHhhcccc-cHHHHHHHHHhhc
Confidence            3445667889999999999974        278999999 99999999999  9999963311000 000111111111 


Q ss_pred             c--cCCCeEEEEeCCC-ccHHHHHHHHHH----CC--ccceeeccccHHHHHhCCCceec
Q 031752           92 C--KEEDRLVVGCQSG-ARSLHATADLLG----AG--FKHVSNFGGGHMAWVQNGLKVKA  142 (153)
Q Consensus        92 ~--~~~~~ivi~c~~g-~~a~~~~~~L~~----~G--~~~v~~l~gG~~~w~~~g~~~~~  142 (153)
                      +  ..+++||+||.+| .|+..++..|.+    .|  +.+|++|.||+.+|.+++.|.+.
T Consensus        99 ~~~~~~~~IVvyC~sG~~Rs~~aa~~l~~~L~~~G~~~~~V~~L~GG~~aW~~~~~~~~~  158 (169)
T 3f4a_A           99 ADGRGALNVIFHCMLSQQRGPSAAMLLLRSLDTAELSRCRLWVLRGGFSRWQSVYGDDES  158 (169)
T ss_dssp             HTSSSCEEEEEECSSSSSHHHHHHHHHHHTCCHHHHTTEEEEEETTHHHHHHHHHTTCTT
T ss_pred             ccccCCCeEEEEeCCCCCcHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHHcCCccc
Confidence            1  1247999999987 788888877654    36  57899999999999998776554

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.82  E-value=2.9e-20  Score=148.84  Aligned_cols=116  Identities=15%  Similarity=0.156  Sum_probs=97.1

Q ss_pred             ceeecHHHHHHHHhC---------CCeEEecC--ChhhhhcCCCCCcceeCccccccC--CCCCCCCh-HHHHHHHhh-c
Q 031752           28 VITVDVRAAKNLLES---------GYGYLDVR--TAEEFKEGHVDAAKIFNIPYMFNT--PEGRVKNP-DFLKKVRSL-C   92 (153)
Q Consensus        28 ~~~i~~~~~~~~~~~---------~~~iIDvR--~~~e~~~ghi~ga~~i~ip~~~~~--~~~~~~~~-~~~~~~~~~-~   92 (153)
                      ...++++++.++++.         +.+|||||  ++.+|..||||||  +|+|+..+.  +.+.+..+ +|.+.+.+. +
T Consensus       123 ~~~i~~~~l~~~~~~~~~~~~~~~~~~liDvR~~~~~e~~~ghIpgA--~nip~~~~~~~~~~~~~~~~~l~~~~~~~gi  200 (423)
T 2wlr_A          123 EQLVYPQWLHDLQQGKEVTAKPAGDWKVIEAAWGAPKLYLISHIPGA--DYIDTNEVESEPLWNKVSDEQLKAMLAKHGI  200 (423)
T ss_dssp             GGEECHHHHHHHHTTCCCTTCCSSCEEEEEEESSSCSHHHHCBCTTC--EEEEGGGTEETTTTEECCHHHHHHHHHHTTC
T ss_pred             CcccCHHHHHHHhhccccccccCCCeEEEEecCCCchhhccCcCCCc--EEcCHHHhccCCCCCCCCHHHHHHHHHHcCC
Confidence            357899999888862         47899999  9999999999999  999997662  23334333 555566555 7


Q ss_pred             cCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCC
Q 031752           93 KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREK  145 (153)
Q Consensus        93 ~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~  145 (153)
                      +++++||+||++|.+|..+++.|..+||++|++|+||+.+|.+.|+|++++.+
T Consensus       201 ~~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~~W~~~g~pv~~g~~  253 (423)
T 2wlr_A          201 RHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQTWSDAGLPVERGTP  253 (423)
T ss_dssp             CTTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHHHHHHTTCCCBCSSC
T ss_pred             CCCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHHHHhhCCCCcccCCC
Confidence            89999999999999999999999999999999999999999999999988653

>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1

Probab=99.80  E-value=3.4e-20  Score=129.26  Aligned_cols=107  Identities=17%  Similarity=0.142  Sum_probs=79.6

Q ss_pred             CcceeecHHHHHHHHhC---CCeEEecCChhhhhcCCCCCcceeCccccccC---------C-CCCCCChHHHHHHHhhc
Q 031752           26 AEVITVDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNT---------P-EGRVKNPDFLKKVRSLC   92 (153)
Q Consensus        26 ~~~~~i~~~~~~~~~~~---~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~---------~-~~~~~~~~~~~~~~~~~   92 (153)
                      .....|+++++.+++++   +.+|||||++.||..||||||  +|+|+..+.         + ...++.++..+.+.. +
T Consensus        13 ~~~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHIpgA--inip~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~   89 (154)
T 1hzm_A           13 EMAISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESA--INVAIPGIMLRRLQKGNLPVRALFTRGEDRDRFTR-R   89 (154)
T ss_dssp             CCSSBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSC--CCCCCSSHHHHTBCCSCCCTTTTSTTSHHHHHHHH-S
T ss_pred             ccccccCHHHHHHHHhCCCCCEEEEEcCCHHHHhhccccCc--eEeCccHHHHhhhhcCcccHHHhCCCHHHHHHHhc-c
Confidence            34678999999998864   589999999999999999999  999986421         0 012222223334433 4


Q ss_pred             cCCCeEEEEeCCCccH-------HHHHHHHHH---CCccceeeccccHHHHHhC
Q 031752           93 KEEDRLVVGCQSGARS-------LHATADLLG---AGFKHVSNFGGGHMAWVQN  136 (153)
Q Consensus        93 ~~~~~ivi~c~~g~~a-------~~~~~~L~~---~G~~~v~~l~gG~~~w~~~  136 (153)
                      +++++||+||++|.++       ..+++.|+.   .||+ |++|.||+.+|.+.
T Consensus        90 ~~~~~iVvyc~~g~~~~~~~~aa~~~~~~l~~l~~~G~~-v~~L~GG~~~W~~~  142 (154)
T 1hzm_A           90 CGTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCR-AFYLEGGFSKFQAE  142 (154)
T ss_dssp             TTSSCEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTCC-CEECCCCHHHHHHH
T ss_pred             CCCCeEEEEeCCCCccccccccchHHHHHHHHHHHCCCc-eEEEcChHHHHHHH
Confidence            6889999999988764       444556665   4999 99999999999875

>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}

Probab=99.80  E-value=2.2e-19  Score=126.06  Aligned_cols=113  Identities=17%  Similarity=0.168  Sum_probs=79.4

Q ss_pred             hcCCcceeecHHHHHHHHh--------C-CCeEEecCChhhhhcCCCCCcceeCccccccC-----CCCCCCChHHHHHH
Q 031752           23 SSGAEVITVDVRAAKNLLE--------S-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNT-----PEGRVKNPDFLKKV   88 (153)
Q Consensus        23 ~~~~~~~~i~~~~~~~~~~--------~-~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~-----~~~~~~~~~~~~~~   88 (153)
                      .....+..|+++++.++++        + +.+|||||++.||..||||||  +|+|+..+.     ..+.+.   +...+
T Consensus         5 ~~~~~~~~is~~el~~~l~~~~~~~~~~~~~~liDvR~~~e~~~ghI~ga--~~i~~~~l~~~~~~~~~~~~---~~~~~   79 (158)
T 3tg1_B            5 KQLASIKIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGA--VHINCADKISRRRLQQGKIT---VLDLI   79 (158)
T ss_dssp             ------CEECHHHHHHHHCC----------CEEEECSCHHHHHHCCBTTC--EECCCSSHHHHHHHTTSSCC---HHHHT
T ss_pred             CCCCCCcEecHHHHHHHHHhcccccCCCCCEEEEEcCCHHHHHhCCCCCc--eeechhHHHHHhhhhcCccc---HHhhc
Confidence            4556788999999999987        2 389999999999999999999  999996321     000010   00000


Q ss_pred             H------hh-ccCCCeEEEEeCCCc---------cHHHHHHHHHHCCccceeeccccHHHHHhCCCcee
Q 031752           89 R------SL-CKEEDRLVVGCQSGA---------RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVK  141 (153)
Q Consensus        89 ~------~~-~~~~~~ivi~c~~g~---------~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~  141 (153)
                      .      .. ..++++||+||++|.         ++..+++.|...|| +|++|.||+.+|.+..-...
T Consensus        80 ~~~~~~~~~~~~~~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~-~v~~L~GG~~~W~~~~p~~~  147 (158)
T 3tg1_B           80 SCREGKDSFKRIFSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQNHENLC  147 (158)
T ss_dssp             CCCCSSCSSTTTTTSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTC-CEEEETTHHHHHTSSCGGGB
T ss_pred             CCHHHHHHHhccCCCeEEEEECCCCcccccCcchHHHHHHHHHHhCCC-cEEEeCCcHHHHHHHhhhhc
Confidence            0      00 124789999999884         58899999999999 69999999999987654443

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.79  E-value=1.3e-19  Score=149.90  Aligned_cols=100  Identities=26%  Similarity=0.409  Sum_probs=88.6

Q ss_pred             hcCCcceeecHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEe
Q 031752           23 SSGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGC  102 (153)
Q Consensus        23 ~~~~~~~~i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c  102 (153)
                      .....+..|+++++.++++++.+|||||++.||..||||||  +|+|+.           ++.+.+.. ++++++||+||
T Consensus       483 ~~~~~~~~i~~~~~~~~~~~~~~~iDvR~~~e~~~ghi~ga--~~ip~~-----------~l~~~~~~-l~~~~~iv~~C  548 (588)
T 3ics_A          483 IVDGFVDTVQWHEIDRIVENGGYLIDVREPNELKQGMIKGS--INIPLD-----------ELRDRLEE-VPVDKDIYITC  548 (588)
T ss_dssp             HHTTSCCEECTTTHHHHHHTTCEEEECSCGGGGGGCBCTTE--EECCHH-----------HHTTCGGG-SCSSSCEEEEC
T ss_pred             ccccccceecHHHHHHHhcCCCEEEEcCCHHHHhcCCCCCC--EECCHH-----------HHHHHHhh-CCCCCeEEEEC
Confidence            45677889999999999988899999999999999999999  999995           44444444 48899999999


Q ss_pred             CCCccHHHHHHHHHHCCccceeeccccHHHHHhCC
Q 031752          103 QSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNG  137 (153)
Q Consensus       103 ~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g  137 (153)
                      ++|.||..+++.|++.||+ |+.|.||+.+|++..
T Consensus       549 ~~g~rs~~a~~~l~~~G~~-v~~l~GG~~~w~~~~  582 (588)
T 3ics_A          549 QLGMRGYVAARMLMEKGYK-VKNVDGGFKLYGTVL  582 (588)
T ss_dssp             SSSHHHHHHHHHHHHTTCC-EEEETTHHHHHHHHC
T ss_pred             CCCcHHHHHHHHHHHcCCc-EEEEcchHHHHHhhh
Confidence            9999999999999999999 999999999998753

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.79  E-value=5.2e-20  Score=151.33  Aligned_cols=98  Identities=21%  Similarity=0.361  Sum_probs=84.6

Q ss_pred             cCCcceeecHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeC
Q 031752           24 SGAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQ  103 (153)
Q Consensus        24 ~~~~~~~i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~  103 (153)
                      .......|+++++.++ +++.+|||||++.||..+|||||  +|+|+.           ++.+.+.+ ++++++||+||+
T Consensus       468 ~~~~~~~i~~~~~~~~-~~~~~~iDvR~~~e~~~~~i~ga--~~ip~~-----------~l~~~~~~-~~~~~~iv~~c~  532 (565)
T 3ntd_A          468 IKGDATPIHFDQIDNL-SEDQLLLDVRNPGELQNGGLEGA--VNIPVD-----------ELRDRMHE-LPKDKEIIIFSQ  532 (565)
T ss_dssp             HHTSCCEECTTTTTSC-CTTEEEEECSCGGGGGGCCCTTC--EECCGG-----------GTTTSGGG-SCTTSEEEEECS
T ss_pred             cccccceeeHHHHHhC-CCCcEEEEeCCHHHHhcCCCCCc--EECCHH-----------HHHHHHhh-cCCcCeEEEEeC
Confidence            4456778999988777 55689999999999999999999  999996           33333333 488999999999


Q ss_pred             CCccHHHHHHHHHHCCccceeeccccHHHHHhCC
Q 031752          104 SGARSLHATADLLGAGFKHVSNFGGGHMAWVQNG  137 (153)
Q Consensus       104 ~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g  137 (153)
                      +|.||..+++.|++.|| +|++|.||+.+|+++|
T Consensus       533 ~g~rs~~a~~~l~~~G~-~v~~l~gG~~~w~~~g  565 (565)
T 3ntd_A          533 VGLRGNVAYRQLVNNGY-RARNLIGGYRTYKFAS  565 (565)
T ss_dssp             SSHHHHHHHHHHHHTTC-CEEEETTHHHHHHHTC
T ss_pred             CchHHHHHHHHHHHcCC-CEEEEcChHHHHHhCc
Confidence            99999999999999999 9999999999999875

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.76  E-value=7.7e-19  Score=138.69  Aligned_cols=100  Identities=19%  Similarity=0.336  Sum_probs=78.9

Q ss_pred             CCCeEEecCChhhhh-----------cCCCCCcceeCccccccC---CCCC-CCCh-HHHHHHHhh---ccC---CCeEE
Q 031752           42 SGYGYLDVRTAEEFK-----------EGHVDAAKIFNIPYMFNT---PEGR-VKNP-DFLKKVRSL---CKE---EDRLV   99 (153)
Q Consensus        42 ~~~~iIDvR~~~e~~-----------~ghi~ga~~i~ip~~~~~---~~~~-~~~~-~~~~~~~~~---~~~---~~~iv   99 (153)
                      .+.+|||||++.||.           .||||||  +|||+..+.   +++. +..+ ++.+.+.+.   +++   +++||
T Consensus       173 ~~~~lIDvR~~~Ef~G~~~~~~~~~~~GhIpGA--iniP~~~l~~~~~~~~~~~~~~~l~~~~~~~~~gi~~~~~d~~iv  250 (373)
T 1okg_A          173 PQAIITDARSADRFASTVRPYAADKMPGHIEGA--RNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVVQGAGDAADLSSFV  250 (373)
T ss_dssp             TTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTC--EECCGGGGEECCSSSCEECCHHHHHHHHHTTCC-----CCCTTSE
T ss_pred             cCceEEeCCCHHHccccccccccCCcCccCCCc--EEecHHHhhccCCCCCccCCHHHHHHHHHhhhcCCCcccCCCCEE
Confidence            457899999999999           9999999  999997653   2222 3333 344444432   367   89999


Q ss_pred             EEeCCCccHHHHHHHHHHCCccceeeccccHHHHHh-CCCceecC
Q 031752          100 VGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQ-NGLKVKAR  143 (153)
Q Consensus       100 i~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~-~g~~~~~~  143 (153)
                      +||++|.||..++..|..+||+||++|.||+.+|.. .++|++++
T Consensus       251 vyC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~pv~~~  295 (373)
T 1okg_A          251 FSCGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIMRS  295 (373)
T ss_dssp             EECSSSSTHHHHHHHHHHTTSCCCEECSSHHHHHHHHTHHHHHHH
T ss_pred             EECCchHHHHHHHHHHHHcCCCCeeEeCChHHHHhcCCCCCcccC
Confidence            999999999999999999999999999999999997 68887544

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4

Probab=99.75  E-value=9.6e-18  Score=117.55  Aligned_cols=121  Identities=9%  Similarity=0.095  Sum_probs=82.4

Q ss_pred             CCcceeecHHHHHHHHhC---CCeEEecCChhhhhcCCCCCcceeCccccccCCCC-------CCCChHHHHHHHhhccC
Q 031752           25 GAEVITVDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEG-------RVKNPDFLKKVRSLCKE   94 (153)
Q Consensus        25 ~~~~~~i~~~~~~~~~~~---~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~-------~~~~~~~~~~~~~~~~~   94 (153)
                      ......|+++++.+++++   +.+|||||++.||..||||||  +|||...+.+..       .++. ...+.+.+. .+
T Consensus        11 ~~~~~~i~~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~ga--inip~~~~~~~~~~~~l~~~lp~-~~~~~~~~~-~~   86 (157)
T 1whb_A           11 TKEKGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHS--LSVPEEAISPGVTASWIEAHLPD-DSKDTWKKR-GN   86 (157)
T ss_dssp             CCCCSEECHHHHHHHHTCSSSCEEEEEESCHHHHHHCCBTTC--EEECSSSCCTTCCHHHHHHSCCT-THHHHHHGG-GT
T ss_pred             cccCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhccccCC--cccCHHHccCCCcHHHHHHHCCh-HHHHHHHhc-CC
Confidence            355778999999999874   478999999999999999999  999986442211       0111 111111111 23


Q ss_pred             CCeEEEEeCCCcc----HHHHHHHHHH----C----Cccc-eeeccccHHHHHhCCCceecCCCCCCCC
Q 031752           95 EDRLVVGCQSGAR----SLHATADLLG----A----GFKH-VSNFGGGHMAWVQNGLKVKAREKPADHR  150 (153)
Q Consensus        95 ~~~ivi~c~~g~~----a~~~~~~L~~----~----G~~~-v~~l~gG~~~w~~~g~~~~~~~~~~~~~  150 (153)
                      .+.||+||.++.+    +..+++.|.+    .    ||.+ |++|.||+.+|.+. +|.....+....+
T Consensus        87 ~~~VVvy~~~~~~~~~~a~~~~~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~~~~~~~~~~p  154 (157)
T 1whb_A           87 VEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQYTTNAKVSGP  154 (157)
T ss_dssp             SSEEEEECSSCCGGGCCTTCHHHHHHHTTTTTCSSCCCSSCCEEESSCHHHHHHH-CGGGBSCCCCCCC
T ss_pred             CCEEEEECCCCCccccccccHHHHHHHHHHHhccccccCCCeEEEcchHHHHHHH-ChhhhCCCCCCCC
Confidence            4569999986643    3556667662    2    4543 99999999999985 8877666544443

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.74  E-value=2.2e-17  Score=128.14  Aligned_cols=119  Identities=14%  Similarity=0.050  Sum_probs=92.9

Q ss_pred             cCCcceeecHHHHHHHHhCC----CeEEecC---------Chhhh-hcCCCCCcceeCcccccc-CCC----CCCCC-hH
Q 031752           24 SGAEVITVDVRAAKNLLESG----YGYLDVR---------TAEEF-KEGHVDAAKIFNIPYMFN-TPE----GRVKN-PD   83 (153)
Q Consensus        24 ~~~~~~~i~~~~~~~~~~~~----~~iIDvR---------~~~e~-~~ghi~ga~~i~ip~~~~-~~~----~~~~~-~~   83 (153)
                      .++.+..||++++.++++++    +++||++         ...|| +++|||||  +++++..+ .+.    ..++. ..
T Consensus        23 sm~~~~LIsp~~l~~ll~~~~~~rvv~lDasw~lP~~~r~~~~E~~~~~HIPGA--v~~Dld~~~d~~~~~ph~LP~~~~  100 (327)
T 3utn_X           23 SMPLFDLISPKAFVKLVASEKVHRIVPVDATWYLPSWKLDNKVDFLTKPRIPNS--IFFDIDAISDKKSPYPHMFPTKKV  100 (327)
T ss_dssp             -CCSCEEECHHHHHHHHHHCSSSCEEEEECCCCCGGGCCCHHHHHHHSCBCTTC--EECCTTTSSCTTSSSTTCCCCHHH
T ss_pred             cCccccccCHHHHHHHHhCCCCCcEEEEEecCCCCCCCCCHHHHHHhhCcCCCC--eeeChHHhcCCCCCCCCCCcCHHH
Confidence            45556789999999999743    6789985         24566 67999999  66665444 111    22333 37


Q ss_pred             HHHHHHhh-ccCCCeEEEEeCCC-ccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCC
Q 031752           84 FLKKVRSL-CKEEDRLVVGCQSG-ARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREK  145 (153)
Q Consensus        84 ~~~~~~~~-~~~~~~ivi~c~~g-~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~  145 (153)
                      |.+.+.++ |+++++||+|++.+ ..|.+++|.|+.+|+++|++|+|| .+|+++|+|++++..
T Consensus       101 f~~~l~~lGI~~d~~VVvYD~~~~~~AaR~wW~Lr~~Gh~~V~vLdGg-~aW~~~g~p~~~~~~  163 (327)
T 3utn_X          101 FDDAMSNLGVQKDDILVVYDRVGNFSSPRCAWTLGVMGHPKVYLLNNF-NQYREFKYPLDSSKV  163 (327)
T ss_dssp             HHHHHHHTTCCTTCEEEEECSSSSSSHHHHHHHHHHTTCSEEEEESCH-HHHHHTTCCCBCCCC
T ss_pred             HHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHHcCCCceeecccH-HHHHHhCCCcccCCc
Confidence            88888888 99999999999865 468999999999999999999877 899999999987653

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4

Probab=99.74  E-value=1.5e-17  Score=116.70  Aligned_cols=116  Identities=9%  Similarity=0.074  Sum_probs=77.0

Q ss_pred             CCcceeecHHHHHHHHhC---CCeEEecCChhhhhcCCCCCcceeCccccccCCCCC-------CCChHHHHHHHhhccC
Q 031752           25 GAEVITVDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGR-------VKNPDFLKKVRSLCKE   94 (153)
Q Consensus        25 ~~~~~~i~~~~~~~~~~~---~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~-------~~~~~~~~~~~~~~~~   94 (153)
                      ......|+++++.+++++   +.+|||||++.||..||||||  +|||...+.+...       ++  +....+.....+
T Consensus        16 ~~~~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gA--inip~~~l~~~~~~~~l~~~lp--~~~~~l~~~~~~   91 (157)
T 2gwf_A           16 PRGSGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHS--LSVPEEAISPGVTASWIEAHLP--DDSKDTWKKRGN   91 (157)
T ss_dssp             ---CCEECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTC--EECCGGGCCTTCCHHHHHHTSC--HHHHHHHHTTTT
T ss_pred             cCCCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhcCccCC--cccCHHHcCCCCcHHHHHHHcC--HHHHHHHHhcCC
Confidence            445678999999999874   478999999999999999999  9999875532210       11  111111111124


Q ss_pred             CCeEEEEeCCCcc----HHHHHHHHH----HC----Cccc-eeeccccHHHHHhCCCceecCCC
Q 031752           95 EDRLVVGCQSGAR----SLHATADLL----GA----GFKH-VSNFGGGHMAWVQNGLKVKAREK  145 (153)
Q Consensus        95 ~~~ivi~c~~g~~----a~~~~~~L~----~~----G~~~-v~~l~gG~~~w~~~g~~~~~~~~  145 (153)
                      .+.||+||.++.+    +..+++.|.    +.    |+.+ |++|.||+.+|.+. +|.....+
T Consensus        92 ~~~VVvy~~~~~~~~~~a~~~l~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~~~~~~  154 (157)
T 2gwf_A           92 VEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQYTTNA  154 (157)
T ss_dssp             SSEEEEECSSCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH-CGGGBSCC
T ss_pred             CCEEEEEcCCCCccccCcccHHHHHHHHHHhhccccccCCceEEEccHHHHHHHH-ChhhcCCC
Confidence            4568999986643    344555554    32    4543 99999999999984 77655443

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.73  E-value=8.1e-18  Score=124.47  Aligned_cols=94  Identities=15%  Similarity=0.117  Sum_probs=73.3

Q ss_pred             CCeEEecCChhhhhcCCCCCcceeCcccc--ccCCCC---CCC-ChHHHHHHHhhccCCCeEEEEeCCCc-cHHHHHHHH
Q 031752           43 GYGYLDVRTAEEFKEGHVDAAKIFNIPYM--FNTPEG---RVK-NPDFLKKVRSLCKEEDRLVVGCQSGA-RSLHATADL  115 (153)
Q Consensus        43 ~~~iIDvR~~~e~~~ghi~ga~~i~ip~~--~~~~~~---~~~-~~~~~~~~~~~~~~~~~ivi~c~~g~-~a~~~~~~L  115 (153)
                      +.+|||||++.+|..||||||  +|+|+.  .+....   .++ ..+|.+.+.++ ..+++||+||++|. +|.++++.|
T Consensus         6 ~~~iiDvR~~~ey~~ghIpgA--i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~ivvyc~~g~~~s~~a~~~L   82 (230)
T 2eg4_A            6 DAVLVDTRPRPAYEAGHLPGA--RHLDLSAPKLRLREEAELKALEGGLTELFQTL-GLRSPVVLYDEGLTSRLCRTAFFL   82 (230)
T ss_dssp             TCEEEECSCHHHHHHCBCTTC--EECCCCSCCCCCCSHHHHHHHHHHHHHHHHHT-TCCSSEEEECSSSCHHHHHHHHHH
T ss_pred             CEEEEECCChhhHhhCcCCCC--EECCccchhcccCCCCCcCCCHHHHHHHHHhc-CCCCEEEEEcCCCCccHHHHHHHH
Confidence            478999999999999999999  999986  332100   000 02455555555 45899999999988 899999999


Q ss_pred             HHCCccceeeccccHHHHHhCCCceecCCC
Q 031752          116 LGAGFKHVSNFGGGHMAWVQNGLKVKAREK  145 (153)
Q Consensus       116 ~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~  145 (153)
                      + +||+||++|+||   |.+  +|++++.+
T Consensus        83 ~-~G~~~v~~l~GG---W~~--~p~~~~~~  106 (230)
T 2eg4_A           83 G-LGGLEVQLWTEG---WEP--YATEKEEP  106 (230)
T ss_dssp             H-HTTCCEEEECSS---CGG--GCCBCSCC
T ss_pred             H-cCCceEEEeCCC---Ccc--CcccCCCC
Confidence            9 999999999999   987  78766543

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.73  E-value=5e-18  Score=137.46  Aligned_cols=105  Identities=18%  Similarity=0.231  Sum_probs=91.7

Q ss_pred             CCcceeecHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCC
Q 031752           25 GAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQS  104 (153)
Q Consensus        25 ~~~~~~i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~  104 (153)
                      ......++++++.+.++++ +|||||++.+|..||||||  +|+|+.          ..|.+++.++.+++++||+||..
T Consensus       269 ~~~~~~is~~~l~~~l~~~-~iiD~R~~~~y~~ghIpGA--~~i~~~----------~~~~~~~~~l~~~~~~vvvy~~~  335 (474)
T 3tp9_A          269 APERVDLPPERVRAWREGG-VVLDVRPADAFAKRHLAGS--LNIPWN----------KSFVTWAGWLLPADRPIHLLAAD  335 (474)
T ss_dssp             CCEECCCCGGGHHHHHHTS-EEEECSCHHHHHHSEETTC--EECCSS----------TTHHHHHHHHCCSSSCEEEECCT
T ss_pred             cCCCceeCHHHHHHHhCCC-EEEECCChHHHhccCCCCe--EEECcc----------hHHHHHHHhcCCCCCeEEEEECC
Confidence            4456789999999999887 9999999999999999999  999984          25888888877889999999997


Q ss_pred             CccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecC
Q 031752          105 GARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAR  143 (153)
Q Consensus       105 g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~  143 (153)
                      +. +.++++.|+.+||++|+.+.+|+.+|..++.++...
T Consensus       336 ~~-~~~~~~~L~~~G~~~v~~~l~G~~~W~~~g~~~~~~  373 (474)
T 3tp9_A          336 AI-APDVIRALRSIGIDDVVDWTDPAAVDRAAPDDVASY  373 (474)
T ss_dssp             TT-HHHHHHHHHHTTCCCEEEEECGGGGTTCCGGGEECC
T ss_pred             Cc-HHHHHHHHHHcCCcceEEecCcHHHHHhcccccccc
Confidence            76 677999999999999998777999999998877643

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.70  E-value=1.1e-18  Score=141.35  Aligned_cols=86  Identities=27%  Similarity=0.370  Sum_probs=0.0

Q ss_pred             HHHHHhC-CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCccHHHHHHH
Q 031752           36 AKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATAD  114 (153)
Q Consensus        36 ~~~~~~~-~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~  114 (153)
                      +.+.+++ +.+|||||++.||..||||||  +|+|+.           ++.+.+.+ ++++++||+||++|.||..++..
T Consensus       379 ~~~~~~~~~~~liDvR~~~e~~~ghIpgA--~~ip~~-----------~l~~~~~~-l~~~~~iv~~C~~G~rs~~a~~~  444 (466)
T 3r2u_A          379 HSEDITGNESHILDVRNDNEWNNGHLSQA--VHVPHG-----------KLLETDLP-FNKNDVIYVHCQSGIRSSIAIGI  444 (466)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhCCCcEEEEeCCHHHHhcCcCCCC--EECCHH-----------HHHHHHhh-CCCCCeEEEECCCChHHHHHHHH
Confidence            3444443 478999999999999999999  999996           44444444 47899999999999999999999


Q ss_pred             HHHCCccceeeccccHHHHHh
Q 031752          115 LLGAGFKHVSNFGGGHMAWVQ  135 (153)
Q Consensus       115 L~~~G~~~v~~l~gG~~~w~~  135 (153)
                      |+.+||++|++|.||+.+|++
T Consensus       445 L~~~G~~~v~~l~GG~~~W~~  465 (466)
T 3r2u_A          445 LEHKGYHNIINVNEGYKDIQL  465 (466)
T ss_dssp             ---------------------
T ss_pred             HHHcCCCCEEEecChHHHHhh
Confidence            999999999999999999975

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.68  E-value=2e-16  Score=122.83  Aligned_cols=106  Identities=23%  Similarity=0.438  Sum_probs=82.9

Q ss_pred             eecHHHHHHHHhCC-----CeEEecCChhhhh-----------cCCCCCcceeCcccccc-CCCCCCC-C-hH-----HH
Q 031752           30 TVDVRAAKNLLESG-----YGYLDVRTAEEFK-----------EGHVDAAKIFNIPYMFN-TPEGRVK-N-PD-----FL   85 (153)
Q Consensus        30 ~i~~~~~~~~~~~~-----~~iIDvR~~~e~~-----------~ghi~ga~~i~ip~~~~-~~~~~~~-~-~~-----~~   85 (153)
                      .++.+++.+.++++     .+|||+|++.+|.           .||||||  +|+|+..+ ++++... . .+     +.
T Consensus       185 v~~~~~v~~~v~~~~~~~~~~lvDaRs~~rf~G~~~ep~~~~r~GHIPGA--~nlP~~~~ld~~~~~~~~~~e~l~~~l~  262 (327)
T 3utn_X          185 IVDYEEMFQLVKSGELAKKFNAFDARSLGRFEGTEPEPRSDIPSGHIPGT--QPLPYGSLLDPETKTYPEAGEAIHATLE  262 (327)
T ss_dssp             EECHHHHHHHHHTTCHHHHCEEEECSCHHHHHTSSCCSSSSCCCCBCTTE--EECCGGGGSCTTTCCCCCTTHHHHHHHH
T ss_pred             eecHHHHhhhhhcccccccceeeccCccceecccccCccccccCCCCCCC--cccChhhccCCCCCCCCCcHHHHHHHHH
Confidence            46778888887653     6899999999995           4999999  99999877 3333322 1 12     22


Q ss_pred             HHHHhh---ccCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHhCC
Q 031752           86 KKVRSL---CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNG  137 (153)
Q Consensus        86 ~~~~~~---~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g  137 (153)
                      +.+...   ++++++||+||++|.+|..++..|..+||++|.+|+|++..|....
T Consensus       263 ~~~~~~~~gid~~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lYdGSWsEW~~r~  317 (327)
T 3utn_X          263 KALKDFHCTLDPSKPTICSCGTGVSGVIIKTALELAGVPNVRLYDGSWTEWVLKS  317 (327)
T ss_dssp             HHHHHTTCCCCTTSCEEEECSSSHHHHHHHHHHHHTTCCSEEEESSHHHHHHHHH
T ss_pred             HHHHHhhcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeCCCcHHHhcccc
Confidence            222222   6789999999999999999999999999999999999999998753

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.41  E-value=3e-13  Score=109.43  Aligned_cols=79  Identities=18%  Similarity=0.261  Sum_probs=65.6

Q ss_pred             CCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCcc
Q 031752           42 SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFK  121 (153)
Q Consensus        42 ~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~  121 (153)
                      .+.+|||+|++.+|..||||||  +|+|..          ..|..++.+.++++++||+||. +.++.++++.|..+||+
T Consensus       295 ~~~~ilD~R~~~~y~~gHIpGA--v~ip~~----------~~~~~~~~~~~~~~~~vvly~~-~~~a~~a~~~L~~~G~~  361 (466)
T 3r2u_A          295 TNRLTFDLRSKEAYHGGHIEGT--INIPYD----------KNFINQIGWYLNYDQEINLIGD-YHLVSKATHTLQLIGYD  361 (466)
T ss_dssp             CCSEEEECSCHHHHHHSCCTTC--EECCSS----------TTHHHHHTTTCCTTSCEEEESC-HHHHHHHHHHHHTTTCC
T ss_pred             CCeEEEECCCHHHHhhCCCCCc--EECCcc----------HHHHHHHHhccCCCCeEEEEEC-CchHHHHHHHhhhhhcc
Confidence            4578999999999999999999  999984          2577888877889999999998 55789999999999999


Q ss_pred             ceee-ccccHHHH
Q 031752          122 HVSN-FGGGHMAW  133 (153)
Q Consensus       122 ~v~~-l~gG~~~w  133 (153)
                      +|+. +.|+...|
T Consensus       362 ~v~~~l~g~~~~~  374 (466)
T 3r2u_A          362 DIAGYQLPQSKIQ  374 (466)
T ss_dssp             CEEEEECCC----
T ss_pred             cccccccCccccc
Confidence            9987 66655444

>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}

Probab=98.04  E-value=1e-05  Score=55.91  Aligned_cols=85  Identities=16%  Similarity=0.214  Sum_probs=52.5

Q ss_pred             eecHHHHHHHHhCC-CeEEecCChhh------------hhcC-CCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccC
Q 031752           30 TVDVRAAKNLLESG-YGYLDVRTAEE------------FKEG-HVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKE   94 (153)
Q Consensus        30 ~i~~~~~~~~~~~~-~~iIDvR~~~e------------~~~g-hi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~   94 (153)
                      .++++++..+.+.+ ..|||+|++.|            +..+ +|.|.  +++|....    .+. ++....+.+. -+.
T Consensus        29 ~~~~~d~~~L~~~Gi~~IIdlR~~~E~~~~p~~~~~~~~~~~~gi~~~--~~iPv~~~----~~~-~~~~~~~~~~l~~~  101 (156)
T 2f46_A           29 QLTKADAEQIAQLGIKTIICNRPDREEESQPDFAQIKQWLEQAGVTGF--HHQPVTAR----DIQ-KHDVETFRQLIGQA  101 (156)
T ss_dssp             CCCGGGHHHHHHHTCCEEEECSCTTSSTTCCCHHHHHHHHGGGTCCEE--EECCCCTT----TCC-HHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCccccCCCcHHHHHHHHHHCCCHhh--eECccCCC----CCC-HHHHHHHHHHHHhC
Confidence            46777887776656 68999998766            2233 47666  99998532    112 2233323332 235


Q ss_pred             CCeEEEEeCCCccHHHHHH-HHHHCCcc
Q 031752           95 EDRLVVGCQSGARSLHATA-DLLGAGFK  121 (153)
Q Consensus        95 ~~~ivi~c~~g~~a~~~~~-~L~~~G~~  121 (153)
                      +++|++||.+|.|+..++. .|...|.+
T Consensus       102 ~~pVlvHC~sG~Rs~~l~al~l~~~g~~  129 (156)
T 2f46_A          102 EYPVLAYCRTGTRCSLLWGFRRAAEGMP  129 (156)
T ss_dssp             CSSEEEECSSSHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            8899999999998764433 23445654

>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A

Probab=97.06  E-value=0.0012  Score=44.50  Aligned_cols=86  Identities=14%  Similarity=0.120  Sum_probs=52.0

Q ss_pred             cHHHHHHHHhCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCCh----HHHHHHHhhccCCCeEEEEeCCCc
Q 031752           32 DVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNP----DFLKKVRSLCKEEDRLVVGCQSGA  106 (153)
Q Consensus        32 ~~~~~~~~~~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ivi~c~~g~  106 (153)
                      +.+++..+.+.+ ..|||+|++.+......+|..++++|.....    .+..    ++.+.+......+.+|+++|..|.
T Consensus        24 ~~~~~~~L~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~   99 (150)
T 4erc_A           24 LPAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLRIPDFC----PPAPDQIDRFVQIVDEANARGEAVGVHCALGF   99 (150)
T ss_dssp             SHHHHHHHHHTTEEEEEECSSSCCTTGGGCTTSEEEECCCCTTS----CCCHHHHHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CHHHHHHHHHCCCCEEEEcCCCCCCcccccCCceEEEEecCCCC----CCCHHHHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence            356665555556 6899999987765555566667777774331    1122    223333333456789999999886


Q ss_pred             -cHH-HHHHHHHH-CCcc
Q 031752          107 -RSL-HATADLLG-AGFK  121 (153)
Q Consensus       107 -~a~-~~~~~L~~-~G~~  121 (153)
                       |+. .++.+|.. .|.+
T Consensus       100 ~Rsg~~~a~~l~~~~~~~  117 (150)
T 4erc_A          100 GRTGTMLACYLVKERGLA  117 (150)
T ss_dssp             HHHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHcCCC
Confidence             765 44444443 5653

>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens}

Probab=96.44  E-value=0.007  Score=40.52  Aligned_cols=86  Identities=14%  Similarity=0.127  Sum_probs=49.0

Q ss_pred             cHHHHHHHHhCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCCh-H---HHHHHHhhccCCCeEEEEeCCCc
Q 031752           32 DVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNP-D---FLKKVRSLCKEEDRLVVGCQSGA  106 (153)
Q Consensus        32 ~~~~~~~~~~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~ivi~c~~g~  106 (153)
                      +.+++..+.+.+ ..|||+|+..++....+++..+.++|..+..    .+.. .   +.+.+.+....+.+|+++|..|.
T Consensus        25 ~~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~~~~d~~----~p~~~~~~~~~~~i~~~~~~~~~vlVHC~aG~  100 (151)
T 2img_A           25 LPAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLRIPDFC----PPAPDQIDRFVQIVDEANARGEAVGVHCALGF  100 (151)
T ss_dssp             SHHHHHHHHHTTEEEEEECSSSCCTTGGGCTTSEEEECCCCTTC----CCCHHHHHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cHHHHHHHHHCCCCEEEECCCCCCCCHHHHhhCCeEEEeCCCCC----CCCHHHHHHHHHHHHHHHhCCCcEEEECCCCC
Confidence            445554444455 6899999986655444555455777764321    1112 2   23333332456889999999775


Q ss_pred             -cHH-HHHHHHHHC-Ccc
Q 031752          107 -RSL-HATADLLGA-GFK  121 (153)
Q Consensus       107 -~a~-~~~~~L~~~-G~~  121 (153)
                       |+. .++.+|... |.+
T Consensus       101 ~Rsg~~~~~~l~~~~~~~  118 (151)
T 2img_A          101 GRTGTMLACYLVKERGLA  118 (151)
T ss_dssp             SHHHHHHHHHHHHHHCCC
T ss_pred             ChHHHHHHHHHHHHhCcC
Confidence             654 444455444 653

>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A

Probab=95.68  E-value=0.018  Score=38.79  Aligned_cols=90  Identities=11%  Similarity=0.102  Sum_probs=48.6

Q ss_pred             cHHHHHHHHhCC-CeEEecCChhhhhcC----CCCCcceeCcccccc-CCCCCCCChHHHHHHHhhc-cCCCeEEEEeCC
Q 031752           32 DVRAAKNLLESG-YGYLDVRTAEEFKEG----HVDAAKIFNIPYMFN-TPEGRVKNPDFLKKVRSLC-KEEDRLVVGCQS  104 (153)
Q Consensus        32 ~~~~~~~~~~~~-~~iIDvR~~~e~~~g----hi~ga~~i~ip~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~ivi~c~~  104 (153)
                      +..++..+-+-+ ..|||+|+..+....    .-.|..++++|.... .+...+..+.+.+.+..+. ..+.+|+++|..
T Consensus        22 ~~~d~~~L~~~gi~~Vi~l~~~~e~~~~~~~~~~~gi~~~~ipi~d~~~~~~~~~~~~~~~~~~~i~~~~~~~vlvHC~a  101 (151)
T 1xri_A           22 DSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGIRLFQFGIEGNKEPFVNIPDHKIRMALKVLLDEKNHPVLIHCKR  101 (151)
T ss_dssp             CHHHHHHHHHHTCSEEEECCSSCCCHHHHHHHHHHTCEEEECCCCCCCGGGCCCCHHHHHHHHHHHHCGGGCSEEEECSS
T ss_pred             CccCHHHHHHCCCCEEEECCCCCcChhHHHHHHhcCCeEEecccccccCccccCCHHHHHHHHHHHHcCCCCCEEEECCC
Confidence            445554444445 689999987653210    012345677777432 1111222223434333332 357899999998


Q ss_pred             Cc-cHHHH-HHHHHHCCcc
Q 031752          105 GA-RSLHA-TADLLGAGFK  121 (153)
Q Consensus       105 g~-~a~~~-~~~L~~~G~~  121 (153)
                      |. |+..+ +-.|...|.+
T Consensus       102 G~~RTg~~~a~~l~~~g~~  120 (151)
T 1xri_A          102 GKHRTGCLVGCLRKLQKWC  120 (151)
T ss_dssp             SSSHHHHHHHHHHHHTTBC
T ss_pred             CCCHHHHHHHHHHHHhCCC
Confidence            85 76544 4445556754

>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*

Probab=95.53  E-value=0.015  Score=39.18  Aligned_cols=88  Identities=13%  Similarity=0.077  Sum_probs=47.2

Q ss_pred             HHHHHHHh-CC-CeEEecCChhhhhcC-------CCCCcceeCccccccCCCCCCC-ChHHHHHHHhhccCCCeEEEEeC
Q 031752           34 RAAKNLLE-SG-YGYLDVRTAEEFKEG-------HVDAAKIFNIPYMFNTPEGRVK-NPDFLKKVRSLCKEEDRLVVGCQ  103 (153)
Q Consensus        34 ~~~~~~~~-~~-~~iIDvR~~~e~~~g-------hi~ga~~i~ip~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivi~c~  103 (153)
                      .+..++++ .+ ..|||+|++.+....       .-.|-.++++|........... -.++.+.+......+.+|+++|.
T Consensus        18 ~~~~~ll~~~gi~~Vi~l~~~~e~~~~~~~~~~~~~~gi~~~~~p~~d~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~   97 (157)
T 3rgo_A           18 NMTRRLVLDENVRGVITMNEEYETRFLCNTSKEWKKAGVEQLRLSTVDMTGVPTLANLHKGVQFALKYQALGQCVYVHCK   97 (157)
T ss_dssp             GGHHHHHHHSCEEEEEEESCCTTTTTSSCCHHHHHHTTCEEEEECCCTTTSSCCHHHHHHHHHHHHHHHHTTCEEEEESS
T ss_pred             cchHHHHHHcCCCEEEECccccccccccCCHHHHHHCCCeEEEecCCCCCCCChHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence            44555544 45 579999987664321       1124456777775331111000 01222333333456789999999


Q ss_pred             CCc-cHHHH-HHHHH-HCCcc
Q 031752          104 SGA-RSLHA-TADLL-GAGFK  121 (153)
Q Consensus       104 ~g~-~a~~~-~~~L~-~~G~~  121 (153)
                      .|. |+..+ +.+|. ..|.+
T Consensus        98 ~G~~Rsg~~~~a~l~~~~~~~  118 (157)
T 3rgo_A           98 AGRSRSATMVAAYLIQVHNWS  118 (157)
T ss_dssp             SSSSHHHHHHHHHHHHHHTCC
T ss_pred             CCCChHHHHHHHHHHHHcCCC
Confidence            886 76644 44444 35653

>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel beta sheet with flanking helices, structural genomics, PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5 PDB: 2oz5_A*

Probab=95.37  E-value=0.11  Score=39.38  Aligned_cols=45  Identities=18%  Similarity=0.239  Sum_probs=32.1

Q ss_pred             ceeecHHHHHHHHhCC-CeEEecCChhhhhcC----CCCCcceeCccccc
Q 031752           28 VITVDVRAAKNLLESG-YGYLDVRTAEEFKEG----HVDAAKIFNIPYMF   72 (153)
Q Consensus        28 ~~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~g----hi~ga~~i~ip~~~   72 (153)
                      ...++++++..+.+-+ ..|||.|++.|....    ..+|..++++|...
T Consensus        53 l~~lt~~d~~~L~~lGI~tVIDLR~~~E~~~~~pd~~~~Gi~~~~iPi~~  102 (296)
T 1ywf_A           53 LSRLDDAGRATLRRLGITDVADLRSSREVARRGPGRVPDGIDVHLLPFPD  102 (296)
T ss_dssp             CTTCCHHHHHHHHHHTCCEEEECCCHHHHHHHCSCCCCTTCEEEECCCCC
T ss_pred             cccCCHHHHHHHHhCCCCEEEECcChhhhhccCCCCCCCCCEEEEecCcc
Confidence            4457788887665546 689999998885432    35677788888754

>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}

Probab=95.26  E-value=0.03  Score=37.59  Aligned_cols=80  Identities=14%  Similarity=0.137  Sum_probs=41.2

Q ss_pred             hCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCC--hHHHHHHHhhccCCCeEEEEeCCC-ccHHHH-HHHH
Q 031752           41 ESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN--PDFLKKVRSLCKEEDRLVVGCQSG-ARSLHA-TADL  115 (153)
Q Consensus        41 ~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ivi~c~~g-~~a~~~-~~~L  115 (153)
                      +.+ ..|||+|++.......-.|..++++|..+... .++..  ++..+.+......+.+|+++|..| .|+..+ +.+|
T Consensus        27 ~~gi~~Vi~l~~e~p~~~~~~~~~~~~~ipi~D~~~-~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RSg~~~~ayl  105 (149)
T 1zzw_A           27 RLNIGYVINVTTHLPLYHYEKGLFNYKRLPATDSNK-QNLRQYFEEAFEFIEEAHQCGKGLLIHCQAGVSRSATIVIAYL  105 (149)
T ss_dssp             HTTEEEEEECCSSSCCTTGGGTCSEEEECCCCCSSS-CCCHHHHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHHHHHHH
T ss_pred             HCCCcEEEEecCCCCCcccCCCCeEEEEEECCCCCc-ccHHHHHHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHH
Confidence            345 57899997422111112344567777753311 11110  112223333245688999999988 576653 4444


Q ss_pred             H-HCCcc
Q 031752          116 L-GAGFK  121 (153)
Q Consensus       116 ~-~~G~~  121 (153)
                      . ..|.+
T Consensus       106 ~~~~~~~  112 (149)
T 1zzw_A          106 MKHTRMT  112 (149)
T ss_dssp             HHHSCCC
T ss_pred             HHHcCCC
Confidence            4 46653

>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens}

Probab=95.11  E-value=0.091  Score=35.27  Aligned_cols=86  Identities=15%  Similarity=0.120  Sum_probs=46.1

Q ss_pred             HHHHHHhCC-CeEEecCChhhhhc--CC-CCCcceeCccccccCCCCCCCC--hHHHHHHHhhccCCCeEEEEeCCC-cc
Q 031752           35 AAKNLLESG-YGYLDVRTAEEFKE--GH-VDAAKIFNIPYMFNTPEGRVKN--PDFLKKVRSLCKEEDRLVVGCQSG-AR  107 (153)
Q Consensus        35 ~~~~~~~~~-~~iIDvR~~~e~~~--gh-i~ga~~i~ip~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ivi~c~~g-~~  107 (153)
                      ++..+-+.+ ..|||+|++.|...  .. ..|..++++|..... ..++..  ++..+.+......+.+|+++|..| .|
T Consensus        25 d~~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~~~~~~ip~~d~~-~~~l~~~~~~~~~~i~~~~~~~~~vlvHC~aG~~R  103 (154)
T 2r0b_A           25 KLPVLQKHGITHIICIRQNIEANFIKPNFQQLFRYLVLDIADNP-VENIIRFFPMTKEFIDGSLQMGGKVLVHGNAGISR  103 (154)
T ss_dssp             GHHHHHHTTCCEEEEEECGGGTTTSSCCCTTTSEEEEEECCSST-TSCCGGGHHHHHHHHHHHHHTTCCEEEECSSSSSH
T ss_pred             cHHHHHHcCCeEEEEeCCccccccCCCCCcCceeEEEEECCCCC-cccHHHHHHHHHHHHHHHHhcCCCEEEEcCCCCCh
Confidence            333333445 68899998776421  12 234456777765332 122211  112223333245689999999988 57


Q ss_pred             HHH-HHHHHH-HCCcc
Q 031752          108 SLH-ATADLL-GAGFK  121 (153)
Q Consensus       108 a~~-~~~~L~-~~G~~  121 (153)
                      +.. ++.+|. ..|.+
T Consensus       104 S~~~~~ayl~~~~~~~  119 (154)
T 2r0b_A          104 SAAFVIAYIMETFGMK  119 (154)
T ss_dssp             HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHcCCC
Confidence            764 444444 45653

>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}

Probab=95.06  E-value=0.052  Score=36.86  Aligned_cols=77  Identities=13%  Similarity=0.144  Sum_probs=42.8

Q ss_pred             hCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCC--hHHHHHHHhhccCCCeEEEEeCCC-ccHHH-HHHHH
Q 031752           41 ESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN--PDFLKKVRSLCKEEDRLVVGCQSG-ARSLH-ATADL  115 (153)
Q Consensus        41 ~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ivi~c~~g-~~a~~-~~~~L  115 (153)
                      +.+ ..|||+|+..+.   ...|..++++|..+... ..+..  .+..+.+......+.+|+++|..| .|+.. ++.+|
T Consensus        31 ~~gI~~Vi~l~~~~~~---~~~~i~~~~ipi~D~~~-~~~~~~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~~~ayl  106 (160)
T 1yz4_A           31 RNKITHIISIHESPQP---LLQDITYLRIPVADTPE-VPIKKHFKECINFIHCCRLNGGNCLVHSFAGISRSTTIVTAYV  106 (160)
T ss_dssp             HTTCCEEEEECSSCCC---CCTTCEEEEECCCSCTT-SCGGGGHHHHHHHHHHHHHTTCCEEEEETTSSSHHHHHHHHHH
T ss_pred             HCCCeEEEEccCCCCC---ccCCCeEEEEECCCCCC-ccHHHHHHHHHHHHHHHHHcCCeEEEECCCCCchHHHHHHHHH
Confidence            345 689999986432   23455667777753321 11111  122333333345688999999988 57763 34444


Q ss_pred             -HHCCcc
Q 031752          116 -LGAGFK  121 (153)
Q Consensus       116 -~~~G~~  121 (153)
                       ...|.+
T Consensus       107 m~~~~~~  113 (160)
T 1yz4_A          107 MTVTGLG  113 (160)
T ss_dssp             HHHHCCC
T ss_pred             HHHcCCC
Confidence             445653

>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens}

Probab=94.81  E-value=0.084  Score=36.08  Aligned_cols=76  Identities=17%  Similarity=0.247  Sum_probs=42.7

Q ss_pred             hCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCC--hHHHHHHHhhccCCCeEEEEeCCC-ccHHHH-HHHH
Q 031752           41 ESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN--PDFLKKVRSLCKEEDRLVVGCQSG-ARSLHA-TADL  115 (153)
Q Consensus        41 ~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ivi~c~~g-~~a~~~-~~~L  115 (153)
                      +.+ ..|||+|+..+.   ...|..++++|..... ..++..  .+..+.+......+.+|+++|..| .|+..+ +.+|
T Consensus        30 ~~gI~~Vi~l~~~~~~---~~~~i~~~~ip~~D~~-~~~l~~~~~~~~~fi~~~~~~~~~VlVHC~aG~~RSg~~~~ayL  105 (165)
T 1wrm_A           30 KNKVTHILSVHDSARP---MLEGVKYLCIPAADSP-SQNLTRHFKESIKFIHECRLRGESCLVHCLAGVSRSVTLVIAYI  105 (165)
T ss_dssp             HTTEEEEEECSTTCCC---CSTTCEEEECCCCSST-TSCCGGGHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHHHHHHH
T ss_pred             HCCCcEEEEecCCCCC---CCCCCeEEEEECCCCC-CccHHHHHHHHHHHHHHHHHCCCeEEEECCCCCChhHHHHHHHH
Confidence            345 578999986542   2345566778875432 122211  122233333245788999999988 577653 4455


Q ss_pred             H-HCCc
Q 031752          116 L-GAGF  120 (153)
Q Consensus       116 ~-~~G~  120 (153)
                      . ..|.
T Consensus       106 m~~~~~  111 (165)
T 1wrm_A          106 MTVTDF  111 (165)
T ss_dssp             HHTSSC
T ss_pred             HHHcCC
Confidence            4 3454

>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus}

Probab=94.68  E-value=0.06  Score=36.71  Aligned_cols=78  Identities=14%  Similarity=0.194  Sum_probs=42.6

Q ss_pred             hCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCC--hHHHHHHHhhccCCCeEEEEeCCC-ccHHHH-HHH-
Q 031752           41 ESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN--PDFLKKVRSLCKEEDRLVVGCQSG-ARSLHA-TAD-  114 (153)
Q Consensus        41 ~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ivi~c~~g-~~a~~~-~~~-  114 (153)
                      +.+ ..|||+|++.+.  ....|..++++|...... .++..  .+..+.+......+.+|+++|..| .|+..+ +.+ 
T Consensus        35 ~~gI~~Vi~l~~~~~~--~~~~~~~~~~ip~~D~~~-~~~~~~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~~~ayL  111 (164)
T 2hcm_A           35 RAGITLCVNVSRQQPG--PRAPGVAELRVPVFDDPA-EDLLTHLEPTCAAMEAAVRDGGSCLVYCKNGRSRSAAVCTAYL  111 (164)
T ss_dssp             HTTEEEEEECSSSCCC--CCCTTCEEEECCCCSCTT-SCCHHHHHHHHHHHHHHHHTTCEEEEEESSSSHHHHHHHHHHH
T ss_pred             HCCCeEEEEcCCCCCC--CCCCCCEEEEEeCcCCCC-chHHHHHHHHHHHHHHHHHcCCEEEEECCCCCchHHHHHHHHH
Confidence            345 578999986542  223455667778753311 11110  122222333245689999999988 576633 334 


Q ss_pred             HHHCCcc
Q 031752          115 LLGAGFK  121 (153)
Q Consensus       115 L~~~G~~  121 (153)
                      +...|++
T Consensus       112 m~~~~~~  118 (164)
T 2hcm_A          112 MRHRGHS  118 (164)
T ss_dssp             HHHSCCC
T ss_pred             HHHhCCC
Confidence            4456653

>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specifici phosphatase; 1.88A {Homo sapiens}

Probab=94.64  E-value=0.088  Score=37.02  Aligned_cols=77  Identities=13%  Similarity=0.138  Sum_probs=42.5

Q ss_pred             hCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCC--hHHHHHHHhhccCCCeEEEEeCCC-ccHHH-HHHH-
Q 031752           41 ESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN--PDFLKKVRSLCKEEDRLVVGCQSG-ARSLH-ATAD-  114 (153)
Q Consensus        41 ~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ivi~c~~g-~~a~~-~~~~-  114 (153)
                      +.+ ..|||+|.+.+  ....+|..++++|..+... .++..  .+..+.+......+.+|+++|..| .|+.. ++.+ 
T Consensus        49 ~~gI~~Vi~l~~~~~--~~~~~gi~y~~ipi~D~~~-~~l~~~~~~~~~fi~~~~~~~~~VlVHC~aG~~RSgtvv~ayL  125 (190)
T 2wgp_A           49 ARGITCIVNATIEIP--NFNWPQFEYVKVPLADMPH-APIGLYFDTVADKIHSVSRKHGATLVHCAAGVSRSATLCIAYL  125 (190)
T ss_dssp             HTTCCEEEECCSSSC--CCCCTTSEEEECCCCSSTT-SCGGGGHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHHHHHHH
T ss_pred             HCCCcEEEEecCCCC--CCCCCCCEEEEEEcccCCC-CCHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHH
Confidence            345 68999997543  2234566677788753321 11111  122233333345688999999988 57653 3333 


Q ss_pred             HHHCCc
Q 031752          115 LLGAGF  120 (153)
Q Consensus       115 L~~~G~  120 (153)
                      +...|+
T Consensus       126 m~~~~~  131 (190)
T 2wgp_A          126 MKFHNV  131 (190)
T ss_dssp             HHHHCC
T ss_pred             HHHcCC
Confidence            444564

>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens}

Probab=94.44  E-value=0.11  Score=34.58  Aligned_cols=78  Identities=19%  Similarity=0.138  Sum_probs=41.6

Q ss_pred             HHhCC-CeEEecCChhhhhcCCCC-CcceeCccccccCCCCCCCC--hHHHHHHHhhccCCCeEEEEeCCC-ccHHH-HH
Q 031752           39 LLESG-YGYLDVRTAEEFKEGHVD-AAKIFNIPYMFNTPEGRVKN--PDFLKKVRSLCKEEDRLVVGCQSG-ARSLH-AT  112 (153)
Q Consensus        39 ~~~~~-~~iIDvR~~~e~~~ghi~-ga~~i~ip~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ivi~c~~g-~~a~~-~~  112 (153)
                      +-+.+ ..|||+|++.+-   ..+ +-.+.++|..+.. ..++..  ++..+.+.+....+.+|+++|..| .||.. ++
T Consensus        25 L~~~gi~~Vi~l~~~~~~---~~~~~~~~~~ipi~D~~-~~~l~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~v~  100 (145)
T 2nt2_A           25 LQNRGVRYILNVTREIDN---FFPGVFEYHNIRVYDEE-ATDLLAYWNDTYKFISKAKKHGSKCLVHSKMGVSRSASTVI  100 (145)
T ss_dssp             HHHTTEEEEEECCSSSCC---SCBTTBEEEECCCCSST-TCCCGGGHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHHHH
T ss_pred             HHHCCCCEEEEeCCCCcc---CCCCCcEEEEEEEeCCC-CCcHHHHHHHHHHHHHHHHHcCCeEEEECCCCCchHHHHHH
Confidence            33445 578999975431   122 3345677775432 122211  122223333245688999999988 57754 34


Q ss_pred             HHH-HHCCc
Q 031752          113 ADL-LGAGF  120 (153)
Q Consensus       113 ~~L-~~~G~  120 (153)
                      .+| ...|+
T Consensus       101 ayLm~~~~~  109 (145)
T 2nt2_A          101 AYAMKEYGW  109 (145)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhCC
Confidence            444 44564

>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB: 1fq1_A*

Probab=94.04  E-value=0.14  Score=36.46  Aligned_cols=86  Identities=15%  Similarity=0.129  Sum_probs=47.0

Q ss_pred             cHHHHHHHHhCC-CeEEecCChhhhhcCCC---------CCcceeCccccccCCCCCCCC-h---HHHHHHHhhccCCCe
Q 031752           32 DVRAAKNLLESG-YGYLDVRTAEEFKEGHV---------DAAKIFNIPYMFNTPEGRVKN-P---DFLKKVRSLCKEEDR   97 (153)
Q Consensus        32 ~~~~~~~~~~~~-~~iIDvR~~~e~~~ghi---------~ga~~i~ip~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~   97 (153)
                      ..+++..+.+.+ ..|||+|+..|.....+         .|..++++|....    ..+. .   ++.+.+...+..+.+
T Consensus        60 ~~~d~~~L~~~gi~~Vv~l~~~~E~~~~~~~~~~~~~~~~gi~~~~~pi~d~----~~p~~~~~~~~~~~i~~~~~~~~~  135 (212)
T 1fpz_A           60 VQKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADG----GTPDIASCCEIMEELTTCLKNYRK  135 (212)
T ss_dssp             HHHHHHHHHHHTCCEEEECCCHHHHHHTTCTTHHHHHHHTTCEEEECCCCTT----CCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHCCCCEEEEcCCHHHHHhcCCccHHHHHHHcCCEEEEecCCCC----CCCCHHHHHHHHHHHHHHHhCCCC
Confidence            344554444445 68999999866433211         2334566776422    1111 1   233333332457889


Q ss_pred             EEEEeCCCc-cHH-HHHHHHHHC--Ccc
Q 031752           98 LVVGCQSGA-RSL-HATADLLGA--GFK  121 (153)
Q Consensus        98 ivi~c~~g~-~a~-~~~~~L~~~--G~~  121 (153)
                      |+++|..|. |+. .++.+|...  |.+
T Consensus       136 VlVHC~aG~gRTg~~~a~~L~~~~~g~~  163 (212)
T 1fpz_A          136 TLIHSYGGLGRSCLVAACLLLYLSDTIS  163 (212)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHCSSCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhccCCC
Confidence            999999775 654 445555553  653

>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A

Probab=93.93  E-value=0.25  Score=32.65  Aligned_cols=78  Identities=18%  Similarity=0.114  Sum_probs=42.6

Q ss_pred             hCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCC-ChHHHHHHHhhccCCCeEEEEeCCCc-cHH-HHHHHHH
Q 031752           41 ESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVK-NPDFLKKVRSLCKEEDRLVVGCQSGA-RSL-HATADLL  116 (153)
Q Consensus        41 ~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivi~c~~g~-~a~-~~~~~L~  116 (153)
                      +.+ ..|||++++..  ...-.+-.+.++|..+........ -++..+.+.+....+.+|+++|..|. |+. .++.+|.
T Consensus        27 ~~gI~~Vi~l~~~~~--~~~~~~~~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~~~~aylm  104 (144)
T 3ezz_A           27 ALGITALLNVSSDCP--NHFEGHYQYKCIPVEDNHKADISSWFMEAIEYIDAVKDCRGRVLVHSQAGISRSATICLAYLM  104 (144)
T ss_dssp             HTTCCEEEECSSSCC--CTTTTTSEEEECCCCSSSSCCTTTTHHHHHHHHHHHHHTTCCEEEEESSSSSHHHHHHHHHHH
T ss_pred             HCCCeEEEEccCCCC--ccCCCCceEEEEEcccCCCCChHHHHHHHHHHHHHHHhcCCeEEEECCCCCChhHHHHHHHHH
Confidence            345 68999997432  111123356777876543211111 12333344333456889999999885 665 4455554


Q ss_pred             H-CCc
Q 031752          117 G-AGF  120 (153)
Q Consensus       117 ~-~G~  120 (153)
                      . .|+
T Consensus       105 ~~~~~  109 (144)
T 3ezz_A          105 MKKRV  109 (144)
T ss_dssp             HHHTC
T ss_pred             HHcCC
Confidence            3 565

>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens}

Probab=93.89  E-value=0.19  Score=35.12  Aligned_cols=77  Identities=14%  Similarity=0.195  Sum_probs=42.9

Q ss_pred             hCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCC--hHHHHHHHhhccCCCeEEEEeCCC-ccHHH-HHHHH
Q 031752           41 ESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN--PDFLKKVRSLCKEEDRLVVGCQSG-ARSLH-ATADL  115 (153)
Q Consensus        41 ~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ivi~c~~g-~~a~~-~~~~L  115 (153)
                      +.+ ..|||+|.+.+  ....+|-.++++|..+... .++..  ++..+.+.+....+.+|+++|..| .||.. ++.+|
T Consensus        43 ~~gIt~Vi~l~~~~~--~~~~~~i~~~~ipi~D~~~-~~~~~~~~~~~~fI~~~~~~~~~VLVHC~aG~sRS~~vv~ayL  119 (188)
T 2esb_A           43 SNQITMVINVSVEVV--NTLYEDIQYMQVPVADSPN-SRLCDFFDPIADHIHSVEMKQGRTLLHCAAGVSRSAALCLAYL  119 (188)
T ss_dssp             HTTCCEEEECCSSCC--CCCCTTCEEEECCCCSCTT-SCGGGGHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHHHHHHH
T ss_pred             HCCCcEEEEecCCCC--CcCCCCCEEEEEeCcCCCC-ccHHHHHHHHHHHHHHHHHcCCEEEEECCCCCchHHHHHHHHH
Confidence            345 67999997542  2233555677788753321 11111  122223333245789999999988 57764 44555


Q ss_pred             -HHCCc
Q 031752          116 -LGAGF  120 (153)
Q Consensus       116 -~~~G~  120 (153)
                       ...|+
T Consensus       120 m~~~~~  125 (188)
T 2esb_A          120 MKYHAM  125 (188)
T ss_dssp             HHHSCC
T ss_pred             HHHcCC
Confidence             44665

>2oud_A Dual specificity protein phosphatase 10; A central five-stranded B-sheet, hydrolase; 2.80A {Homo sapiens}

Probab=93.23  E-value=0.17  Score=34.97  Aligned_cols=79  Identities=15%  Similarity=0.153  Sum_probs=41.2

Q ss_pred             hCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHH---HHHHHhhccCCCeEEEEeCCC-ccHHHH-HHH
Q 031752           41 ESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDF---LKKVRSLCKEEDRLVVGCQSG-ARSLHA-TAD  114 (153)
Q Consensus        41 ~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ivi~c~~g-~~a~~~-~~~  114 (153)
                      +.+ ..|||+|++.......-.|..++++|..+... .++. +.|   .+.+......+.+|+++|..| .|+..+ +.+
T Consensus        31 ~~gI~~Vi~l~~e~p~~~~~~~~i~~~~ipi~D~~~-~~l~-~~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~v~ay  108 (177)
T 2oud_A           31 RLNIGYVINVTTHLPLYHYEKGLFNYKRLPATDSNK-QNLR-QYFEEAFEFIEEAHQCGKGLLIHCQAGVSRSATIVIAY  108 (177)
T ss_dssp             HTTEEEEEECCSSSCCTTTTTTCSEEEECCCCCCSS-CCCH-HHHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHHHHHH
T ss_pred             HCCCcEEEEecCCCCcccccCCCceEEEEECCCCCc-ccHH-HHHHHHHHHHHHHHhcCCcEEEEcCCCCCchHHHHHHH
Confidence            345 57899997422111112344567777753211 1111 122   222332245688999999988 576653 445


Q ss_pred             HH-HCCcc
Q 031752          115 LL-GAGFK  121 (153)
Q Consensus       115 L~-~~G~~  121 (153)
                      |. ..|.+
T Consensus       109 Lm~~~~~~  116 (177)
T 2oud_A          109 LMKHTRMT  116 (177)
T ss_dssp             HHHTSCCC
T ss_pred             HHHHcCCC
Confidence            54 46653

>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA, project on protein structural and functional analyses; 1.67A {Homo sapiens}

Probab=93.11  E-value=0.12  Score=34.51  Aligned_cols=77  Identities=13%  Similarity=0.058  Sum_probs=40.2

Q ss_pred             CeEEecCChhhhhcCC---CCCcceeCccccccCCCCCCCC--hHHHHHHHhhcc-CCCeEEEEeCCC-ccHH-HHHHHH
Q 031752           44 YGYLDVRTAEEFKEGH---VDAAKIFNIPYMFNTPEGRVKN--PDFLKKVRSLCK-EEDRLVVGCQSG-ARSL-HATADL  115 (153)
Q Consensus        44 ~~iIDvR~~~e~~~gh---i~ga~~i~ip~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~ivi~c~~g-~~a~-~~~~~L  115 (153)
                      ..|||+|++.+.....   -.|..++++|.... +..++..  .+..+.+..... .+.+|+++|..| .|+. .++.+|
T Consensus        29 ~~Vi~l~~~~~~~~~~~~~~~~i~~~~ip~~d~-~~~~l~~~~~~~~~~i~~~~~~~~~~vlVHC~aG~~RSg~~~~ayl  107 (151)
T 2e0t_A           29 THVLNASHSRWRGTPEAYEGLGIRYLGVEAHDS-PAFDMSIHFQTAADFIHRALSQPGGKILVHCAVGVSRSATLVLAYL  107 (151)
T ss_dssp             CEEEETTCCTTCCSCTTHHHHTCEEEECCCCSS-TTSCTHHHHHHHHHHHHHHHHSTTCCEEEECSSSSHHHHHHHHHHH
T ss_pred             CEEEEccCCcccCCccccCCCCeEEEEEecccC-CCccHHHHHHHHHHHHHHHHhcCCCcEEEECCCCCChHHHHHHHHH
Confidence            6899999865411111   12345667776532 1111110  122222323233 689999999988 5766 444444


Q ss_pred             -HHCCcc
Q 031752          116 -LGAGFK  121 (153)
Q Consensus       116 -~~~G~~  121 (153)
                       ...|.+
T Consensus       108 ~~~~~~~  114 (151)
T 2e0t_A          108 MLYHHLT  114 (151)
T ss_dssp             HHHSCCC
T ss_pred             HHHcCCC
Confidence             456653

>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual specific phosphatase, COMP with peptide, hydrolase; 2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A

Probab=93.00  E-value=0.37  Score=33.55  Aligned_cols=91  Identities=18%  Similarity=0.210  Sum_probs=46.9

Q ss_pred             ecHHHHHHHHhC-C-CeEEecCChhhhhc-CCCCCcceeCccccccCCCCCCCChHHHHHHHhh--ccCCCeEEEEeCCC
Q 031752           31 VDVRAAKNLLES-G-YGYLDVRTAEEFKE-GHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQSG  105 (153)
Q Consensus        31 i~~~~~~~~~~~-~-~~iIDvR~~~e~~~-ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivi~c~~g  105 (153)
                      -+.++..+.+.+ + ..|||++.+.+... -...|-.+.++|.....+...-.-.++.+.+.+.  .+++.+|+|+|..|
T Consensus        48 ~t~~~~~~~L~~~gi~~Iv~l~~~~~~~~~~~~~~i~~~~~pi~d~~~~~~~~~~~~~~~i~~~~~~~~~~~VlVHC~aG  127 (189)
T 3rz2_A           48 ATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAG  127 (189)
T ss_dssp             TTHHHHHHHHHTTTEEEEEECSCCCSCCHHHHHSSCEEEECCCCSSSCCCSHHHHHHHHHHHHHHHHSTTCEEEEECSSS
T ss_pred             ccHHHHHHHHHHcCCcEEEEeCCCcCCHHHHHHcCcEEEEecCCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEECCCC
Confidence            456666676664 4 57899997532110 0111224456664322111000001333333322  25788999999977


Q ss_pred             c-cHH-HHHHHHHHCCcc
Q 031752          106 A-RSL-HATADLLGAGFK  121 (153)
Q Consensus       106 ~-~a~-~~~~~L~~~G~~  121 (153)
                      . |+. .++.+|...|++
T Consensus       128 ~gRSg~~va~~L~~~g~~  145 (189)
T 3rz2_A          128 LGRAPVLVALALIEGGMK  145 (189)
T ss_dssp             STTHHHHHHHHHHTTTCC
T ss_pred             CCHHHHHHHHHHHHcCCC
Confidence            4 654 455666666653

>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein dual-specificity phosphatase, inhibitor; HET: STT; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1vhr_A* 1j4x_A*

Probab=92.88  E-value=0.14  Score=35.47  Aligned_cols=79  Identities=15%  Similarity=0.147  Sum_probs=42.6

Q ss_pred             CC-CeEEecCChhhhhc-------CCCCCcceeCccccccCCCCCCCC--hHHHHHHHhhccC-CCeEEEEeCCCc-cHH
Q 031752           42 SG-YGYLDVRTAEEFKE-------GHVDAAKIFNIPYMFNTPEGRVKN--PDFLKKVRSLCKE-EDRLVVGCQSGA-RSL  109 (153)
Q Consensus        42 ~~-~~iIDvR~~~e~~~-------ghi~ga~~i~ip~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~ivi~c~~g~-~a~  109 (153)
                      .+ ..|||+|++.++..       ..-.|-.++++|..+.... ++..  ++..+.+...... +.+|+++|..|. |+.
T Consensus        52 ~gI~~Vi~l~~~~~~~~~~~~~~~~~~~gi~~~~ip~~D~~~~-~~~~~~~~~~~~i~~~~~~~~~~VlVHC~~G~~RSg  130 (183)
T 3f81_A           52 LGITHVLNAAEGRSFMHVNTNANFYKDSGITYLGIKANDTQEF-NLSAYFERAADFIDQALAQKNGRVLVHCREGYSRSP  130 (183)
T ss_dssp             HTCCEEEETTBSSSTTSBCCCTGGGTTTTCEEEECCCCCSTTS-CGGGGHHHHHHHHHHHHHSTTCCEEEECSSSSSHHH
T ss_pred             CCCcEEEECCCCccccccccchhhcccCCCEEEEEEcCCCCcc-cHHHHHHHHHHHHHHHHHcCCCeEEEECCCCcchHH
Confidence            35 68999998665321       0112335677777544211 1111  1233333333334 789999999885 766


Q ss_pred             H-HHHHHH-HCCcc
Q 031752          110 H-ATADLL-GAGFK  121 (153)
Q Consensus       110 ~-~~~~L~-~~G~~  121 (153)
                      . ++.+|. ..|++
T Consensus       131 ~~v~ayLm~~~~~~  144 (183)
T 3f81_A          131 TLVIAYLMMRQKMD  144 (183)
T ss_dssp             HHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhCCC
Confidence            5 555554 45653

>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}

Probab=92.50  E-value=0.36  Score=32.45  Aligned_cols=86  Identities=13%  Similarity=0.156  Sum_probs=45.7

Q ss_pred             ecHHHHHHHHhC-C-CeEEecCChhhhhc--CCCCCcceeCccccccCCCCCCCCh----HHHHHHHhhc--------cC
Q 031752           31 VDVRAAKNLLES-G-YGYLDVRTAEEFKE--GHVDAAKIFNIPYMFNTPEGRVKNP----DFLKKVRSLC--------KE   94 (153)
Q Consensus        31 i~~~~~~~~~~~-~-~~iIDvR~~~e~~~--ghi~ga~~i~ip~~~~~~~~~~~~~----~~~~~~~~~~--------~~   94 (153)
                      -+.++..+.+.+ + ..|||++.+. |..  ....|-.+.++|....    ..+..    .|.+.+.+..        ++
T Consensus        34 ~t~~~~~~~l~~~gi~~Iv~l~~~~-~~~~~~~~~~i~~~~~p~~d~----~~p~~~~~~~~~~~i~~~~~~~~~~~~~~  108 (167)
T 3s4o_A           34 SNLPTYIKELQHRGVRHLVRVCGPT-YDATLVKSRGIDVHSWPFDDG----APPTRAVLDSWLKLLDTELARQQEDPSVP  108 (167)
T ss_dssp             GGHHHHHHHHHTTTEEEEEECSCCC-SCTHHHHTTTCEEEECCCCTT----CCCCHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred             hhHHHHHHHHHHCCCCEEEECCCCC-CCHHHHHHCCCeEEEeccCCC----CCCCHHHHHHHHHHHHHHHHHHhhccccC
Confidence            455555566654 4 5789999862 211  1112334566776422    11222    2333333321        34


Q ss_pred             CCeEEEEeCCCc-cHH-HHHHHHHHC-Ccc
Q 031752           95 EDRLVVGCQSGA-RSL-HATADLLGA-GFK  121 (153)
Q Consensus        95 ~~~ivi~c~~g~-~a~-~~~~~L~~~-G~~  121 (153)
                      +.+|+++|..|. |+. .++.+|... |.+
T Consensus       109 ~~~vlVHC~aG~~RTg~~~a~~L~~~~~~~  138 (167)
T 3s4o_A          109 PPTIGVHCVAGLGRAPILVALALVEYGNVS  138 (167)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHHHHHTTCCC
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHhCCCC
Confidence            889999999774 654 445566555 654

>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}

Probab=92.00  E-value=0.37  Score=31.88  Aligned_cols=78  Identities=12%  Similarity=0.147  Sum_probs=41.7

Q ss_pred             hCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCC--hHHHHHHHhhccCCCeEEEEeCCCc-cHH-HHHHHH
Q 031752           41 ESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN--PDFLKKVRSLCKEEDRLVVGCQSGA-RSL-HATADL  115 (153)
Q Consensus        41 ~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ivi~c~~g~-~a~-~~~~~L  115 (153)
                      +.+ ..||+++...+  ...-.+-.+.++|..+... .++..  ++..+.+.+....+.+|+|+|..|. ||. .++.+|
T Consensus        27 ~~gI~~Vl~l~~~~~--~~~~~~~~~~~ipi~D~~~-~~~~~~~~~~~~fi~~~~~~~~~VlVHC~~G~sRS~~~v~ayL  103 (144)
T 3s4e_A           27 KNKVTHILNVAYGVE--NAFLSDFTYKSISILDLPE-TNILSYFPECFEFIEEAKRKDGVVLVHSNAGVSRAAAIVIGFL  103 (144)
T ss_dssp             HTTCCEEEECSSSCC--CCCTTTSEEEECCCCCCTT-SCGGGGHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHHHHHHH
T ss_pred             HcCCCEEEEccCCCC--CCCCCCCEEEEEeccCCCC-CchHHHHHHHHHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHH
Confidence            345 67999987432  2222344567777754321 11111  1222333333457889999999875 654 444555


Q ss_pred             H-HCCcc
Q 031752          116 L-GAGFK  121 (153)
Q Consensus       116 ~-~~G~~  121 (153)
                      . ..|++
T Consensus       104 m~~~~~~  110 (144)
T 3s4e_A          104 MNSEQTS  110 (144)
T ss_dssp             HHHHCCC
T ss_pred             HHHcCCC
Confidence            4 35653

>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB: 2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*

Probab=91.42  E-value=0.25  Score=33.15  Aligned_cols=81  Identities=21%  Similarity=0.217  Sum_probs=41.4

Q ss_pred             HHHHHHHHhCC-CeEEecCChhhhhc-----------CCCCCcceeCccccccCCCCCCCC-hHH---HHHHHhhccCCC
Q 031752           33 VRAAKNLLESG-YGYLDVRTAEEFKE-----------GHVDAAKIFNIPYMFNTPEGRVKN-PDF---LKKVRSLCKEED   96 (153)
Q Consensus        33 ~~~~~~~~~~~-~~iIDvR~~~e~~~-----------ghi~ga~~i~ip~~~~~~~~~~~~-~~~---~~~~~~~~~~~~   96 (153)
                      .+++..+-+.+ ..|||+|++.|...           ..-.|..++++|....    ..+. +.+   .+.+.+..  ..
T Consensus        18 ~~d~~~L~~~gi~~Vi~l~~~~e~~~~~~~~~~~~~~~~~~gi~~~~~p~~d~----~~p~~~~~~~~~~~i~~~~--~~   91 (161)
T 2i6j_A           18 ENEILEWRKEGVKRVLVLPEDWEIEESWGDKDYYLSILKKNGLQPLHIPIPDG----GVPSDSQFLTIMKWLLSEK--EG   91 (161)
T ss_dssp             HHHHHHHHHHTCCEEEECSCHHHHHHHHSCHHHHHHHHHHTTCEEEECCCCTT----CCCCHHHHHHHHHHHHHCC--TT
T ss_pred             HHHHHHHHHCCCCEEEEcCchhhhhhhccchhhHHHHHHHcCceEEEecCCCC----CCCChHHHHHHHHHHHHhC--CC
Confidence            34554444445 68999999866532           1123445677775322    1122 223   33333322  22


Q ss_pred             eEEEEeCCC-ccHHH-HHHHHHHC-Cc
Q 031752           97 RLVVGCQSG-ARSLH-ATADLLGA-GF  120 (153)
Q Consensus        97 ~ivi~c~~g-~~a~~-~~~~L~~~-G~  120 (153)
                      . +++|..| .|+.. ++-.|... |.
T Consensus        92 ~-lVHC~aG~~Rtg~~~~~~l~~~~~~  117 (161)
T 2i6j_A           92 N-LVHCVGGIGRTGTILASYLILTEGL  117 (161)
T ss_dssp             E-EEECSSSSHHHHHHHHHHHHHHHCC
T ss_pred             C-EEECCCCCCHHHHHHHHHHHHHcCC
Confidence            3 9999988 46543 34444433 54

>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens}

Probab=91.17  E-value=0.53  Score=33.75  Aligned_cols=74  Identities=16%  Similarity=0.205  Sum_probs=39.6

Q ss_pred             CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCC--hHHHHHHHhhccCCCeEEEEeCCC-ccHHH-HHHHH-HHC
Q 031752           44 YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN--PDFLKKVRSLCKEEDRLVVGCQSG-ARSLH-ATADL-LGA  118 (153)
Q Consensus        44 ~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ivi~c~~g-~~a~~-~~~~L-~~~  118 (153)
                      ..|||+|.+..  ...-.|-.++++|..+... .++..  ++..+.+.+....+.+|+++|..| .|+.. ++.+| ...
T Consensus        33 t~VInl~~e~~--~~~~~gi~y~~ipi~D~~~-~~l~~~~~~~~~fI~~~~~~~~~VLVHC~aG~sRSgtvv~AYLm~~~  109 (211)
T 2g6z_A           33 TALLNVSRRTS--EACMTHLHYKWIPVEDSHT-ADISSHFQEAIDFIDCVREKGGKVLVHSEAGISRSPTICMAYLMKTK  109 (211)
T ss_dssp             CEEEECSSCCC--CTTCTTSEEEECCCCSSTT-SCCGGGHHHHHHHHHHHHHTTCCEEEEESSSSSHHHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCc--cccccCCEEEEeeCCCCCC-CCHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCcHHHHHHHHHHHHc
Confidence            67899997532  1111344567777753321 11111  122333333345789999999988 57653 34444 345


Q ss_pred             Cc
Q 031752          119 GF  120 (153)
Q Consensus       119 G~  120 (153)
                      |+
T Consensus       110 g~  111 (211)
T 2g6z_A          110 QF  111 (211)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2hxp_A Dual specificity protein phosphatase 9; human phosphatase, structural genomics, PSI-2, protein structure initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A

Probab=90.69  E-value=0.18  Score=34.05  Aligned_cols=81  Identities=19%  Similarity=0.255  Sum_probs=40.3

Q ss_pred             HHHHHhCC-CeEEecCChhh--hhc-CCCCCcceeCccccccCCCCCCCC--hHHHHHHHhhccCCCeEEEEeCCC-ccH
Q 031752           36 AKNLLESG-YGYLDVRTAEE--FKE-GHVDAAKIFNIPYMFNTPEGRVKN--PDFLKKVRSLCKEEDRLVVGCQSG-ARS  108 (153)
Q Consensus        36 ~~~~~~~~-~~iIDvR~~~e--~~~-ghi~ga~~i~ip~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ivi~c~~g-~~a  108 (153)
                      +..+.+.+ ..|||+|++..  |.. |.   -.+.++|..+.... ++..  ++..+.+.+....+.+|+++|..| .|+
T Consensus        24 ~~~L~~~gI~~Vi~l~~~~~~~~~~~~~---i~~~~ipi~D~~~~-~l~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS   99 (155)
T 2hxp_A           24 LESLAKLGIRYILNVTPNLPNFFEKNGD---FHYKQIPISDHWSQ-NLSRFFPEAIEFIDEALSQNCGVLVHSLAGVSRS   99 (155)
T ss_dssp             HHHHHHTTEEEEEECSSSCCCTTTTCTT---CEEEECCCCGGGGG-GHHHHHHHHHHHHHHHHHTTCEEEEECSSSSSHH
T ss_pred             HHHHHHCCCCEEEEeCCCCcccccCCCC---eEEEEEECccCCCC-CHHHHHHHHHHHHHHHHHcCCcEEEECCCCCchh
Confidence            33333445 57899997421  111 11   34567776432110 0000  011222222245688999999988 576


Q ss_pred             HH-HHHHHH-HCCc
Q 031752          109 LH-ATADLL-GAGF  120 (153)
Q Consensus       109 ~~-~~~~L~-~~G~  120 (153)
                      .. ++.+|. ..|+
T Consensus       100 ~~vv~ayLm~~~~~  113 (155)
T 2hxp_A          100 VTVTVAYLMQKLHL  113 (155)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHcCC
Confidence            63 344453 3454

>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine phosphatase IVA1...; structural genomics, NYSGXRC, unknown function, PSI; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A

Probab=90.50  E-value=0.39  Score=31.96  Aligned_cols=90  Identities=17%  Similarity=0.186  Sum_probs=46.5

Q ss_pred             ceeecHHHHHHHHh-CC-CeEEecCChhhhhc-CCCCCcceeCccccccCCCCCCCCh----HHHHHHHhh--ccCCCeE
Q 031752           28 VITVDVRAAKNLLE-SG-YGYLDVRTAEEFKE-GHVDAAKIFNIPYMFNTPEGRVKNP----DFLKKVRSL--CKEEDRL   98 (153)
Q Consensus        28 ~~~i~~~~~~~~~~-~~-~~iIDvR~~~e~~~-ghi~ga~~i~ip~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~i   98 (153)
                      ....|.+++.+.+. .+ ..||++++...... -+..+-.+.++|....    ..+..    ++.+.+.+.  .+++.+|
T Consensus        24 p~~~t~~df~~~l~~~gi~~Iv~l~~~~~~~~~~~~~~~~~~~~p~~d~----~~~~~~~~~~~~~~i~~~~~~~~~~~v   99 (159)
T 1rxd_A           24 PTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDG----APPSNQIVDDWLSLVKIKFREEPGCCI   99 (159)
T ss_dssp             CCGGGHHHHHHHHHHTTEEEEEECSCCCSCCHHHHHTTCEEEECCC--C----CCCCHHHHHHHHHHHHHHHHHSTTCEE
T ss_pred             CccccHHHHHHHHHHcCCCEEEEcCCCccCHHHHHHcCCEEEeCCCcCC----CCCCHHHHHHHHHHHHHHHHhCCCCeE
Confidence            34567778666665 45 57889886432110 0112334566664322    11112    233333332  1457899


Q ss_pred             EEEeCCC-ccHH-HHHHHHHHCCcc
Q 031752           99 VVGCQSG-ARSL-HATADLLGAGFK  121 (153)
Q Consensus        99 vi~c~~g-~~a~-~~~~~L~~~G~~  121 (153)
                      +++|..| .|+. .++..|...|.+
T Consensus       100 lVHC~aG~~Rtg~~~a~~l~~~~~~  124 (159)
T 1rxd_A          100 AVHCVAGLGRAPVLVALALIEGGMK  124 (159)
T ss_dssp             EEECSSSSTTHHHHHHHHHHHTTCC
T ss_pred             EEECCCCCCHHHHHHHHHHHHhCCC
Confidence            9999977 4654 445556556653

>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine phosphatase, P-loop, hydrolase; HET: PO4; 1.50A {Autographa californicanucleopolyhedrovirus}

Probab=89.91  E-value=0.24  Score=33.76  Aligned_cols=86  Identities=13%  Similarity=0.147  Sum_probs=44.6

Q ss_pred             ecHHHHHHHHhCC-CeEEecCChhh-hhcCCC--CCcceeCccccccCCCCCCCCh----HHHHHHHhhc--cCCCeEEE
Q 031752           31 VDVRAAKNLLESG-YGYLDVRTAEE-FKEGHV--DAAKIFNIPYMFNTPEGRVKNP----DFLKKVRSLC--KEEDRLVV  100 (153)
Q Consensus        31 i~~~~~~~~~~~~-~~iIDvR~~~e-~~~ghi--~ga~~i~ip~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~ivi  100 (153)
                      -+++++.+. +.+ ..|||++.... |....+  .|..++++|....    ..+..    .|.+.+.+.+  +++.+|++
T Consensus        44 ~~~~~ll~~-~~gi~~Vi~l~~~~~~~~~~~~~~~gi~~~~~~~~d~----~~p~~~~~~~~~~~~~~~~~~~~~~~vlV  118 (169)
T 1yn9_A           44 WTAEQIVKQ-NPSIGAIIDLTNTSKYYDGVHFLRAGLLYKKIQVPGQ----TLPPESIVQEFIDTVKEFTEKCPGMLVGV  118 (169)
T ss_dssp             CCHHHHHHH-CTTEEEEEECCSCSCSCCTHHHHHTTCEEEECCCCSS----SCCCHHHHHHHHHHHHHHHHHSTTSEEEE
T ss_pred             CCHHHHHhh-CCCcCEEEEcCCCCCCCCHHHHHhcCCEEEEEeCCCC----CCCCHHHHHHHHHHHHHHHHhCCCCcEEE
Confidence            345555543 344 68999986532 221111  1334566665322    11211    2333333222  36789999


Q ss_pred             EeCCCc-cHH-HHHHHHHH-CCcc
Q 031752          101 GCQSGA-RSL-HATADLLG-AGFK  121 (153)
Q Consensus       101 ~c~~g~-~a~-~~~~~L~~-~G~~  121 (153)
                      +|..|. |+. .++.+|.. .|++
T Consensus       119 HC~aG~~RTg~~va~~L~~~~~~~  142 (169)
T 1yn9_A          119 HCTHGINRTGYMVCRYLMHTLGIA  142 (169)
T ss_dssp             ECSSSSHHHHHHHHHHHHHHHCCC
T ss_pred             ECCCCCChHHHHHHHHHHHHhCCC
Confidence            999774 654 44555654 6753

>2q05_A Late protein H1, dual specificity protein phosphatase; structural genomics, APC7320, P protein structure initiative; HET: MSE; 2.57A {Vaccinia virus WR}

Probab=88.50  E-value=0.98  Score=31.65  Aligned_cols=75  Identities=17%  Similarity=0.160  Sum_probs=40.9

Q ss_pred             CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCC--hHHHHHHHhhccCCCeEEEEeCCC-ccHHHH-HHHHH-HC
Q 031752           44 YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN--PDFLKKVRSLCKEEDRLVVGCQSG-ARSLHA-TADLL-GA  118 (153)
Q Consensus        44 ~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ivi~c~~g-~~a~~~-~~~L~-~~  118 (153)
                      ..|||+|++.+.  ....+-.++++|...... ..+..  .++.+.+......+.+|+++|..| .|+..+ +.+|. ..
T Consensus        75 ~~Vi~l~~~~~~--~~~~~~~~~~~p~~d~~~-~~l~~~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~v~~yL~~~~  151 (195)
T 2q05_A           75 KYVLNLTMDKYT--LPNSNINIIHIPLVDDTT-TDISKYFDDVTAFLSKCDQRNEPVLVHCAAGVNRSGAMILAYLMSKN  151 (195)
T ss_dssp             SEEEECSSSCCC--CTTCCCEEEECCCCCSSS-CCCGGGHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCC--cccCCcEEEEEEcCCCCc-ccHHHHHHHHHHHHHHHHHcCCcEEEEcCCCCChHHHHHHHHHHHHh
Confidence            468999986532  222344567777653321 11111  133334433345678999999988 575533 44443 45


Q ss_pred             Ccc
Q 031752          119 GFK  121 (153)
Q Consensus       119 G~~  121 (153)
                      |.+
T Consensus       152 ~~~  154 (195)
T 2q05_A          152 KES  154 (195)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            654

>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual specificity phosphatase, DUSP13, testis and skeletal muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A

Probab=88.11  E-value=2.4  Score=29.86  Aligned_cols=76  Identities=22%  Similarity=0.266  Sum_probs=39.6

Q ss_pred             hCC-CeEEecCChhh-------hhcCCCCCcceeCccccccCCCCCCCChHHHH---HHHhhcc-CCCeEEEEeCCC-cc
Q 031752           41 ESG-YGYLDVRTAEE-------FKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLK---KVRSLCK-EEDRLVVGCQSG-AR  107 (153)
Q Consensus        41 ~~~-~~iIDvR~~~e-------~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~ivi~c~~g-~~  107 (153)
                      +.+ ..|||++.+.+       +..+  .+..+.++|..+. +..++.. .|.+   .+.+.+. .+.+|+|+|..| .|
T Consensus        69 ~~gIt~Vinl~~~~~~~~~~~~~~~~--~~i~y~~ipi~D~-p~~dl~~-~f~~~~~fI~~~l~~~~~~VLVHC~aG~sR  144 (205)
T 2pq5_A           69 QLGITHVVNAAAGKFQVDTGAKFYRG--MSLEYYGIEADDN-PFFDLSV-YFLPVARYIRAALSVPQGRVLVHCAMGVSR  144 (205)
T ss_dssp             HHTCCEEEETBCSTTSCCCHHHHTTT--SSCEEEECBCCCC-TTSCGGG-GHHHHHHHHHHHHTSTTCCEEEECSSSSSH
T ss_pred             HcCCeEEEEeCCCcccCCcchhhhcc--CCceEEeeecCCC-CcchHHH-HHHHHHHHHHHHHhcCCCeEEEECCCCCcH
Confidence            335 68999997532       1111  1234567776432 2222221 2322   2222233 678999999988 57


Q ss_pred             HH-HHHHHH-HHCCc
Q 031752          108 SL-HATADL-LGAGF  120 (153)
Q Consensus       108 a~-~~~~~L-~~~G~  120 (153)
                      |. .++.+| ...|.
T Consensus       145 S~tvv~aYLm~~~~~  159 (205)
T 2pq5_A          145 SATLVLAFLMIYENM  159 (205)
T ss_dssp             HHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHcCC
Confidence            66 344444 44564

>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1

Probab=88.10  E-value=0.071  Score=37.11  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=20.7

Q ss_pred             eEEecCChhhhhcCCCCCcceeCcccccc
Q 031752           45 GYLDVRTAEEFKEGHVDAAKIFNIPYMFN   73 (153)
Q Consensus        45 ~iIDvR~~~e~~~ghi~ga~~i~ip~~~~   73 (153)
                      ++||||.+.||.    |||  +|||...+
T Consensus       123 ~liDvRe~~E~~----pgA--~~iprg~l  145 (168)
T 1v8c_A          123 AVVRFREVEPLK----VGS--LSIPQLRV  145 (168)
T ss_dssp             EEEEEEEEEEEE----ETT--EEEEEEEE
T ss_pred             EEEECCChhhcC----CCC--EEcChhHH
Confidence            899999999998    999  99998654

>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}

Probab=87.98  E-value=2.2  Score=28.77  Aligned_cols=73  Identities=10%  Similarity=0.089  Sum_probs=37.1

Q ss_pred             hCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHH-------HHHhhccCCCeEEEEeCCCc-cHH-H
Q 031752           41 ESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLK-------KVRSLCKEEDRLVVGCQSGA-RSL-H  110 (153)
Q Consensus        41 ~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ivi~c~~g~-~a~-~  110 (153)
                      +.+ ..||+++....  .....+-.+.++|..+.      ...++.+       .+.+....+.+|+|+|..|. ||. .
T Consensus        33 ~~gIt~Vlnl~~~~~--~~~~~~~~~~~ipi~D~------~~~~l~~~~~~~~~fI~~~~~~~~~VlVHC~~G~sRS~~v  104 (161)
T 3emu_A           33 NNNISSILLVGIEVP--SLFKDQCDILRLDIVSE------EGHQLYDSIPNAIKFIIRSIQRKEGVLIISGTGVNKAPAI  104 (161)
T ss_dssp             HTTEEEEEEEC---------CTTSEEEEECCCCS------STTHHHHHHHHHHHHHHHHHHTTCEEEEEESSSSSHHHHH
T ss_pred             HCCCCEEEEeCCCCc--cccCCCCEEEEEeCcCC------CCCcHHHHHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHH
Confidence            345 57899997432  11122345667777432      1112222       22222356789999999885 654 4


Q ss_pred             HHHHHH-HCCcc
Q 031752          111 ATADLL-GAGFK  121 (153)
Q Consensus       111 ~~~~L~-~~G~~  121 (153)
                      ++.+|. ..|++
T Consensus       105 v~ayLm~~~~~s  116 (161)
T 3emu_A          105 VIAFLMYYQRLS  116 (161)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHhCCC
Confidence            445554 45643

>3cm3_A Late protein H1, dual specificity protein phosphatase; dual-specificity phosphatase, VH1, hydrolase; 1.32A {Vaccinia virus} PDB: 2rf6_A 2p4d_A

Probab=86.89  E-value=1.2  Score=30.42  Aligned_cols=75  Identities=16%  Similarity=0.122  Sum_probs=39.4

Q ss_pred             CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCC--hHHHHHHHhhccCCCeEEEEeCCC-ccHHH-HHHHHH-HC
Q 031752           44 YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN--PDFLKKVRSLCKEEDRLVVGCQSG-ARSLH-ATADLL-GA  118 (153)
Q Consensus        44 ~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ivi~c~~g-~~a~~-~~~~L~-~~  118 (153)
                      ..||+++.+.+...  -.+-.+.++|...... ..+..  .+..+.+......+.+|+++|..| .|+.. ++.+|. ..
T Consensus        58 ~~Ii~l~~~~~~~~--~~~~~~~~~p~~d~~~-~~l~~~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~v~aylm~~~  134 (176)
T 3cm3_A           58 KYVLNLTMDKYTLP--NSNINIIHIPLVDDTT-TDISKYFDDVTAFLSKCDQRNEPVLVHSAAGVNRSGAMILAYLMSKN  134 (176)
T ss_dssp             SEEEECSSSCCCCT--TSCCEEEECCCCCSSS-CCCGGGHHHHHHHHHHHHHHTCCEEEECSSSSSHHHHHHHHHHHHHC
T ss_pred             CEEEEecCCCCCcC--CCCCEEEEEECCCCCc-ccHHHHHHHHHHHHHHHHHCCCcEEEECCcCCCHHHHHHHHHHHHHh
Confidence            46899997544221  1233556677643321 11111  123333333334578999999987 56553 344443 45


Q ss_pred             Ccc
Q 031752          119 GFK  121 (153)
Q Consensus       119 G~~  121 (153)
                      |.+
T Consensus       135 ~~~  137 (176)
T 3cm3_A          135 KES  137 (176)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            654

>2y96_A Dual specificity phosphatase DUPD1; hydrolase; 2.38A {Homo sapiens}

Probab=86.65  E-value=3.3  Score=29.53  Aligned_cols=78  Identities=13%  Similarity=0.105  Sum_probs=39.9

Q ss_pred             hCC-CeEEecCChhh-hhc--C--CCCCcceeCccccccCCCCCCCChHH---HHHHHhhc-cCCCeEEEEeCCC-ccHH
Q 031752           41 ESG-YGYLDVRTAEE-FKE--G--HVDAAKIFNIPYMFNTPEGRVKNPDF---LKKVRSLC-KEEDRLVVGCQSG-ARSL  109 (153)
Q Consensus        41 ~~~-~~iIDvR~~~e-~~~--g--hi~ga~~i~ip~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~ivi~c~~g-~~a~  109 (153)
                      +.+ ..|||++.... ...  .  .-.|-.++++|..... ..++. ..|   .+.+.+.+ ..+.+|+|+|..| .|+.
T Consensus        77 ~~gIt~VInl~~~~~~~~~~~~~~~~~~i~y~~ipi~D~~-~~~l~-~~~~~~~~fI~~~l~~~~~~VLVHC~aG~sRS~  154 (219)
T 2y96_A           77 KAGFTHVLNAAHGRWNVDTGPDYYRDMDIQYHGVEADDLP-TFDLS-VFFYPAAAFIDRALSDDHSKILVHCVMGRSRSA  154 (219)
T ss_dssp             HTTCCEEEETTBSTTSBCCHHHHTTTSCCEEEECCCCSST-TSCGG-GGHHHHHHHHHHHHTSTTCCEEEECSSSSSHHH
T ss_pred             HCCCeEEEECCCCccccccchhhhcccCcEEEEEECCCCC-chhHH-HHHHHHHHHHHHHHHccCCeEEEECCCCCCHHH
Confidence            345 67999996431 000  0  0123345667764331 11211 123   22333333 5688999999988 5765


Q ss_pred             H-HHHHH-HHCCc
Q 031752          110 H-ATADL-LGAGF  120 (153)
Q Consensus       110 ~-~~~~L-~~~G~  120 (153)
                      . ++.+| ...|+
T Consensus       155 tvv~aYLm~~~~~  167 (219)
T 2y96_A          155 TLVLAYLMIHKDM  167 (219)
T ss_dssp             HHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHcCC
Confidence            4 44444 44564

>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle, hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1 c.45.1.1 PDB: 1ohc_A 1ohd_A

Probab=86.20  E-value=5.6  Score=30.56  Aligned_cols=81  Identities=7%  Similarity=0.118  Sum_probs=43.5

Q ss_pred             HHHHHHHHh-CC-CeEEecCChh----hhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEEEEeCCC
Q 031752           33 VRAAKNLLE-SG-YGYLDVRTAE----EFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSG  105 (153)
Q Consensus        33 ~~~~~~~~~-~~-~~iIDvR~~~----e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivi~c~~g  105 (153)
                      +++..+.++ .+ ..|||+|.+.    .+..   .|..++++|....    ..+..+....+.+. .+++.+|+|+|..|
T Consensus       207 ~~~~~~~L~~~GI~~VInL~~~~y~~~~~~~---~gi~~~~ipi~D~----~~P~~~~~~~fi~~~~~~~~~VLVHC~aG  279 (348)
T 1ohe_A          207 PETYIQYFKNHNVTTIIRLNKRMYDAKRFTD---AGFDHHDLFFADG----STPTDAIVKEFLDICENAEGAIAVHSKAG  279 (348)
T ss_dssp             THHHHHHHHHTTEEEEEECSCCSSCTHHHHT---TTCEEEECCCCTT----CCCCHHHHHHHHHHHHSCSSEEEEECSSS
T ss_pred             HHHHHHHHHHcCCCEEEECCCCcCChhhhhc---CCcEEEEecCCCC----CCCCHHHHHHHHHHHHhCCCcEEEECCCC
Confidence            444445554 35 5799999642    2222   2335566776421    12222333322222 45788999999988


Q ss_pred             -ccHH-HHHHHHHH-CCc
Q 031752          106 -ARSL-HATADLLG-AGF  120 (153)
Q Consensus       106 -~~a~-~~~~~L~~-~G~  120 (153)
                       .|+. .++.+|.. .|+
T Consensus       280 ~gRTGtvvaayLm~~~g~  297 (348)
T 1ohe_A          280 LGRTGTLIACYIMKHYRM  297 (348)
T ss_dssp             SHHHHHHHHHHHHHHHCC
T ss_pred             CChHHHHHHHHHHHHcCC
Confidence             4654 44555554 565

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}

Probab=86.17  E-value=2.5  Score=31.72  Aligned_cols=83  Identities=10%  Similarity=0.058  Sum_probs=46.1

Q ss_pred             cHHHHHHHHhCC-CeEEecCChhhhhcC------------CCCCcceeCccccccCCCCCCCChHH-------HHHHHhh
Q 031752           32 DVRAAKNLLESG-YGYLDVRTAEEFKEG------------HVDAAKIFNIPYMFNTPEGRVKNPDF-------LKKVRSL   91 (153)
Q Consensus        32 ~~~~~~~~~~~~-~~iIDvR~~~e~~~g------------hi~ga~~i~ip~~~~~~~~~~~~~~~-------~~~~~~~   91 (153)
                      ++.++..+-+.+ ..||+++...+....            ...|-.++++|..+.      ..+++       .+.+.+.
T Consensus        28 ~~~d~~~L~~~GIt~Vlnl~~~~e~~~~g~~~~~~~~~~~~~~gi~~~~ipi~D~------~~~~l~~~~~~~~~~I~~~  101 (294)
T 3nme_A           28 TPEDVDKLRKIGVKTIFCLQQDPDLEYFGVDISSIQAYAKKYSDIQHIRCEIRDF------DAFDLRMRLPAVVGTLYKA  101 (294)
T ss_dssp             STHHHHHHHHTTEEEEEECCCHHHHHHTTCCHHHHHHHHHTCTTCEEEECCCCTT------CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCEEEECCCCcchhhccCChhhhhhhhhhcCCcEEEEEeCCCC------CCCCHHHHHHHHHHHHHHH
Confidence            445665554556 678999987764321            112346677887422      11122       2222222


Q ss_pred             c-cCCCeEEEEeCCCc-cHH-HHHHHHHH-CCc
Q 031752           92 C-KEEDRLVVGCQSGA-RSL-HATADLLG-AGF  120 (153)
Q Consensus        92 ~-~~~~~ivi~c~~g~-~a~-~~~~~L~~-~G~  120 (153)
                      + ..+.+|+|+|..|. ||. .++.+|.. .|.
T Consensus       102 l~~~g~~VLVHC~aG~sRS~tvv~ayLm~~~g~  134 (294)
T 3nme_A          102 VKRNGGVTYVHSTAGMGRAPAVALTYMFWVQGY  134 (294)
T ss_dssp             HHHHCSEEEEECSSSSSHHHHHHHHHHHHTSCC
T ss_pred             HHhCCCEEEEECCCCCchhHHHHHHHHHHHhCC
Confidence            3 34789999999885 654 45566654 354

>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}

Probab=84.87  E-value=1.6  Score=30.08  Aligned_cols=38  Identities=11%  Similarity=0.117  Sum_probs=29.4

Q ss_pred             cCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031752           93 KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM  131 (153)
Q Consensus        93 ~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~  131 (153)
                      .++.+++|+|++-..+..++..|...|+. +..+.|++.
T Consensus        44 ~~~~k~lVF~~~~~~~~~l~~~L~~~g~~-~~~lhg~~~   81 (185)
T 2jgn_A           44 GKDSLTLVFVETKKGADSLEDFLYHEGYA-CTSIHGDRS   81 (185)
T ss_dssp             -CCSCEEEEESCHHHHHHHHHHHHHTTCC-EEEEC----
T ss_pred             CCCCeEEEEECCHHHHHHHHHHHHHcCCc-eEEEeCCCC
Confidence            46788999999988889999999999986 888888864

>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}

Probab=82.31  E-value=2.1  Score=28.66  Aligned_cols=36  Identities=19%  Similarity=0.391  Sum_probs=31.4

Q ss_pred             CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccH
Q 031752           94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH  130 (153)
Q Consensus        94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~  130 (153)
                      ++.+++++|++...+..++..|...|+. +..+.|++
T Consensus        34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~-~~~~hg~~   69 (163)
T 2hjv_A           34 NPDSCIIFCRTKEHVNQLTDELDDLGYP-CDKIHGGM   69 (163)
T ss_dssp             CCSSEEEECSSHHHHHHHHHHHHHTTCC-EEEECTTS
T ss_pred             CCCcEEEEECCHHHHHHHHHHHHHcCCc-EEEEeCCC
Confidence            5678999999988899999999999987 78888885

>2c46_A MRNA capping enzyme; phosphatase, transferase, hydrolase, mRNA processing, multifunctional enzyme, nucleotidyltransferase; 1.6A {Homo sapiens} PDB: 1i9s_A 1i9t_A

Probab=81.62  E-value=8.3  Score=27.93  Aligned_cols=85  Identities=15%  Similarity=0.231  Sum_probs=45.2

Q ss_pred             eecHHHHHHHHhC---C-CeEEecCChh------hhhcCCCCCcceeCccccccCCCCCCCChH----HHHHHHhhcc--
Q 031752           30 TVDVRAAKNLLES---G-YGYLDVRTAE------EFKEGHVDAAKIFNIPYMFNTPEGRVKNPD----FLKKVRSLCK--   93 (153)
Q Consensus        30 ~i~~~~~~~~~~~---~-~~iIDvR~~~------e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~----~~~~~~~~~~--   93 (153)
                      +.++.++.+.++.   + ..|||++.+.      .+...+|   .++++|....   +..+..+    |.+.+.+.+.  
T Consensus        66 r~~~~~v~~~l~~~~~~i~~VInL~~e~~~y~~~~~~~~gi---~y~~~p~~D~---~~~P~~~~l~~~~~~i~~~~~~~  139 (241)
T 2c46_A           66 RFHPSMLSNYLKSLKVKMGLLVDLTNTSRFYDRNDIEKEGI---KYIKLQCKGH---GECPTTENTETFIRLCERFNERN  139 (241)
T ss_dssp             CCCHHHHHHHHHHHTCEEEEEEECSSCSCSSCTHHHHTTTC---EEEECCCCCT---TCCCCHHHHHHHHHHHTTC----
T ss_pred             cCCHHHHHHHHHHhCCCcceeeeccCCCCCCCHHHHHHCCC---EEEEEecCCC---CCCCChHHHHHHHHHHHHHHHhC
Confidence            4567877776642   3 6899999653      2222222   4566776321   1122222    3333333222  


Q ss_pred             CCCeEEEEeCCCc-cHH-HHHHHHHH-CCc
Q 031752           94 EEDRLVVGCQSGA-RSL-HATADLLG-AGF  120 (153)
Q Consensus        94 ~~~~ivi~c~~g~-~a~-~~~~~L~~-~G~  120 (153)
                      ++.+|+|+|..|. |+. .++.+|.. .|+
T Consensus       140 ~~~~VlVHC~aG~gRTGt~ia~yLm~~~~~  169 (241)
T 2c46_A          140 PPELIGVHCTHGFNRTGFLICAFLVEKMDW  169 (241)
T ss_dssp             -CEEEEEECSSSSHHHHHHHHHHHHHTTCC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence            3578999999774 654 44555554 564

>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19

Probab=80.56  E-value=2.6  Score=28.61  Aligned_cols=36  Identities=19%  Similarity=0.207  Sum_probs=31.4

Q ss_pred             CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccH
Q 031752           94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH  130 (153)
Q Consensus        94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~  130 (153)
                      +.++++++|++-..+..++..|...|+. +..+.|++
T Consensus        30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~-~~~~hg~~   65 (172)
T 1t5i_A           30 EFNQVVIFVKSVQRCIALAQLLVEQNFP-AIAIHRGM   65 (172)
T ss_dssp             CCSSEEEECSSHHHHHHHHHHHHHTTCC-EEEECTTS
T ss_pred             CCCcEEEEECCHHHHHHHHHHHHhcCCC-EEEEECCC
Confidence            5678999999988899999999999987 77888885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	153
d1tq1a_	119	c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senesc	1e-22
d1gmxa_	108	c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia	3e-10
d1e0ca2	136	c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacte	7e-10
d1qxna_	137	c.46.1.3 (A:) Polysulfide-sulfur transferase (sulf	1e-08
d1urha2	120	c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtran	5e-07
d1yt8a1	136	c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase	1e-06
d1e0ca1	135	c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter	2e-06
d1yt8a3	157	c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase	3e-06
d1hzma_	154	c.46.1.1 (A:) Erk2 binding domain of Mapk phosphat	4e-06
d1okga2	139	c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtran	7e-06
d1c25a_	161	c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId:	2e-05
d1yt8a4	130	c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase	4e-05
d1rhsa2	144	c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [	1e-04
d1yt8a2	101	c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase P	1e-04
d1t3ka_	132	c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {	3e-04
d1urha1	147	c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransf	6e-04
d1uara2	141	c.46.1.2 (A:145-285) Sulfurtransferase {Thermus th	0.001
d2gwfa1	135	c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal h	0.002

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 84.5 bits (208), Expect = 1e-22
 Identities = 57/113 (50%), Positives = 72/113 (63%), Gaps = 2/113 (1%)

Query: 30  TVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVR 89
           +V V  A +LL +G+ YLDVRT EEF +GH   A   N+PYM     G  KN DFL++V 
Sbjct: 9   SVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAI--NVPYMNRGASGMSKNTDFLEQVS 66

Query: 90  SLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA 142
           S   + D ++VGCQSG RS+ AT DLL AGF  V +  GG+ AW +NGL  KA
Sbjct: 67  SHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTKA 119

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

 Score = 52.4 bits (125), Expect = 3e-10
 Identities = 23/108 (21%), Positives = 34/108 (31%), Gaps = 15/108 (13%)

Query: 30  TVDVRAAKNLLESGYGYL-DVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKV 88
            ++V  A   L+     L D+R  + F  GH   A       +         +       
Sbjct: 6   CINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFMRDNDFDTPV---- 61

Query: 89  RSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQN 136
                     +V C  G  S  A   LL  G+  V +  GG  AW + 
Sbjct: 62  ----------MVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ 99

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 51.9 bits (123), Expect = 7e-10
 Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 10/115 (8%)

Query: 36  AKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCK-- 93
              L  +     D R+ +E++   V AAK  +IP   N       +P    ++R+     
Sbjct: 20  LGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALRIRTDIAGR 79

Query: 94  -------EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQN-GLKV 140
                   +  +V  CQ+  RS          G+  V  + G    W  +    V
Sbjct: 80  LEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPV 134

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

 Score = 48.7 bits (115), Expect = 1e-08
 Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 26  AEVITVDVRAAKNLLESGYGY--LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPD 83
           A+++ +  + A  LL+       +DVR  +E K       K +             K+  
Sbjct: 20  ADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAKSGL 79

Query: 84  FLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLK-VKA 142
             +K   +          C++ AR+  A   L   GFK + N  GG   W++ GL  +  
Sbjct: 80  DPEKPVVVF---------CKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDR 130

Query: 143 REKPADH 149
                 H
Sbjct: 131 SHHHHHH 137

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

 Score = 44.2 bits (103), Expect = 5e-07
 Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 14/118 (11%)

Query: 28  VITV-DVRAAKNLLESGYGYLDVRTAEEFK-----------EGHVDAAKIFNIPYMFNTP 75
           V+ V DV  A +  E+    +D R A  F             GH+  A       +    
Sbjct: 5   VVKVTDVLLASH--ENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREG 62

Query: 76  EGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAW 133
           E +  +             +  ++V C SG  +      L      +V  + G    W
Sbjct: 63  ELKTTDELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW 120

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.3 bits (101), Expect = 1e-06
 Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 15/118 (12%)

Query: 26  AEVITVDVRAAKNLLESGYGY--LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPD 83
               ++     + LL++      LD R  +E++   +          +         +P 
Sbjct: 21  RHTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGAELVLRVAELAPDPR 80

Query: 84  FLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFK-HVSNFGGGHMAWVQNGLKV 140
                        R++V C    RS+  T  LL AG    V+    G + W   G ++
Sbjct: 81  T------------RVIVNCAGRTRSIIGTQSLLNAGIPNPVAALRNGTIGWTLAGQQL 126

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 42.8 bits (99), Expect = 2e-06
 Identities = 24/126 (19%), Positives = 39/126 (30%), Gaps = 8/126 (6%)

Query: 28  VITVDVRAAKNLLESGYGYLDVRTAEEFKEGH------VDAAKIFNIPYMFNTPEGRVKN 81
           VI         L       +D+ +A  + EGH      VD  +           +   + 
Sbjct: 10  VIEPA-DLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQ 68

Query: 82  PDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVK 141
            + L        E   +V   + G  +      L   G +      GG  AW+     + 
Sbjct: 69  LESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPL- 127

Query: 142 AREKPA 147
           +RE PA
Sbjct: 128 SRELPA 133

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 157

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 42.6 bits (99), Expect = 3e-06
 Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 16/128 (12%)

Query: 27  EVITVDVRAAKNLLESGYGYL-DVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFL 85
              T+D     + L      + D   +  + + H+  A       +    E         
Sbjct: 3   RADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQLKQALER-------- 54

Query: 86  KKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKV-KARE 144
                     +R V+ C S   +  A A++     K V    GG  AWV  GL       
Sbjct: 55  ------LGTAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTEDGES 108

Query: 145 KPADHRSD 152
             A  R D
Sbjct: 109 LLASPRID 116

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 4e-06
 Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 19/126 (15%)

Query: 29  ITVDVRAAKNLLESGYGY---LDVRTAEEFKEGHVDAAKIFNIPYM--FNTPEGRVKNPD 83
           I+  V      LE G      +D R  E ++  H+++A    IP +      +G +    
Sbjct: 16  ISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRA 75

Query: 84  FLKKVRSLCKEEDR-----LVVGCQSGARS---------LHATADLLGAGFKHVSNFGGG 129
              +     +   R     +V+  +S +           L      L           GG
Sbjct: 76  LFTRGEDRDRFTRRCGTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLEGG 135

Query: 130 HMAWVQ 135
              +  
Sbjct: 136 FSKFQA 141

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]} Length = 139

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

 Score = 40.9 bits (95), Expect = 7e-06
 Identities = 17/110 (15%), Positives = 31/110 (28%), Gaps = 20/110 (18%)

Query: 47  LDVRTAEEF-----------KEGHVDAAK---------IFNIPYMFNTPEGRVKNPDFLK 86
            D R+A+ F             GH++ A+               +  + E    N   + 
Sbjct: 16  TDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVV 75

Query: 87  KVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQN 136
           +      +    V  C SG  +    A +   G  H   + G    +   
Sbjct: 76  QGAGDAADLSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGL 125

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 2e-05
 Identities = 18/144 (12%), Positives = 40/144 (27%), Gaps = 25/144 (17%)

Query: 10  FLRGLFLLLLICRSSGAEVITVDVRAAKNLLESGYGY-------LDVRTAEEFKEGHVDA 62
           F +G     +  +    + I+ ++    ++L   +         +D R   E++ GH+  
Sbjct: 6   FSKGYLFHTVAGKHQDLKYISPEI--MASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKG 63

Query: 63  AKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGA---- 118
           A   N+       E           V +  K    +     S  R       +       
Sbjct: 64  AV--NLH----MEEEVEDFLLKKPIVPTDGKRVIVVFHCEFSSERGPRMCRYVRERDRLG 117

Query: 119 ------GFKHVSNFGGGHMAWVQN 136
                  +  +    GG+  +   
Sbjct: 118 NEYPKLHYPELYVLKGGYKEFFMK 141

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.8 bits (89), Expect = 4e-05
 Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 16/115 (13%)

Query: 26  AEVITVDVRAAKNLLESGYG---YLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNP 82
           A V  +D+       +        LDVRT EE++ GH+  ++      +    +      
Sbjct: 20  AGVERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQLVQETDHVASVR 79

Query: 83  DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNG 137
                         RLV+    G R+  + + L   G++ V+   G   A     
Sbjct: 80  GA------------RLVLVDDDGVRANMSASWLAQMGWQ-VAVLDGLSEADFSER 121

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.9 bits (87), Expect = 1e-04
 Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 13/115 (11%)

Query: 37  KNLLESGYGYLDVRTAEEFK----EGHVDAAKIFNIPY-------MFNTPEGRVKNPDFL 85
           +NL    +  +D R    +     E         +I          F T +G  K+P+ L
Sbjct: 20  ENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEEL 79

Query: 86  KKVRSLCK--EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGL 138
           + +    K      L+  C+ G  + H        G   V+ + G    W     
Sbjct: 80  RAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAP 134

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.9 bits (84), Expect = 1e-04
 Identities = 23/110 (20%), Positives = 30/110 (27%), Gaps = 12/110 (10%)

Query: 28  VITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKK 87
           V T     A  L       LDVR  + F + H   A    +  +      RV   D    
Sbjct: 3   VRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARVPRRD--TP 60

Query: 88  VRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNG 137
           +      E    V  Q               G+  V+   GG   W   G
Sbjct: 61  ITVYDDGEGLAPVAAQRLHDL----------GYSDVALLDGGLSGWRNAG 100

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.6 bits (83), Expect = 3e-04
 Identities = 17/124 (13%), Positives = 33/124 (26%), Gaps = 3/124 (2%)

Query: 27  EVITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFL 85
            +  +       L        +DVR  E   +GH+  +  +      +     V+N    
Sbjct: 6   SISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNVKDK 65

Query: 86  KKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKV-KARE 144
             +               +     +        G K++     G   W  +G  V +  E
Sbjct: 66  DTLVFHSALSQV-RGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRCAE 124

Query: 145 KPAD 148
            P  
Sbjct: 125 VPCK 128

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

 Score = 36.0 bits (82), Expect = 6e-04
 Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 12/120 (10%)

Query: 27  EVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIP-YMFNTPEGRVKNPDFL 85
           E+  +D R A    E           +E+  GH+  A  F+I     +T       P   
Sbjct: 18  EIQIIDARMASPGQEDRNVA------QEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPE 71

Query: 86  KKVRSLCKE----EDRLVVGCQS-GARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKV 140
               ++ +     +  L+V  +     +  A   L   G + VS  GGG   W ++ L +
Sbjct: 72  TFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLL 131

>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} Length = 141

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 35.2 bits (80), Expect = 0.001
 Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 19/124 (15%)

Query: 32  DVRAAKNLLESGYGYL-DVRTAEEFK--------EGHVDAAKIFNIPYMFNTPEGRVKNP 82
           DV      ++ G G L DVR+ +E++             A +  +IP   N P  +  NP
Sbjct: 8   DVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNP 67

Query: 83  DFLKKVRSLCKE---------EDRLVVGCQSGARSLHATADL-LGAGFKHVSNFGGGHMA 132
           D   K     +          +  +VV C+   RS H+   L    G+ HV N+ G    
Sbjct: 68  DGTFKSAEELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWTE 127

Query: 133 WVQN 136
           W   
Sbjct: 128 WGNL 131

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 0.002
 Identities = 12/128 (9%), Positives = 36/128 (28%), Gaps = 23/128 (17%)

Query: 30  TVDVRAAKNLLESGYGY---LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN----- 81
            +  +    ++         +D R  +++++  +  +   ++P    +P           
Sbjct: 2   AITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSL--SVPEEAISPGVTASWIEAHL 59

Query: 82  PDFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFG-------------G 128
           PD  K         + +V+     +         L +    +  +              G
Sbjct: 60  PDDSKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEG 119

Query: 129 GHMAWVQN 136
           G+  W+  
Sbjct: 120 GYENWLLC 127

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	153
d1tq1a_	119	Thiosulfate sulfurtransferase/Senescence-associate	99.95
d1yt8a1	136	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.95
d1gmxa_	108	Sulfurtransferase GlpE {Escherichia coli [TaxId: 5	99.94
d1qxna_	137	Polysulfide-sulfur transferase (sulfide dehydrogen	99.93
d1yt8a3	157	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.93
d1yt8a2	101	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.92
d1e0ca2	136	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.92
d1urha1	147	3-mercaptopyruvate sulfurtransferase {Escherichia	99.92
d1rhsa1	149	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1e0ca1	135	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.91
d1yt8a4	130	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.91
d1uara1	143	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.91
d1rhsa2	144	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1t3ka_	132	Dual specificity phosphatase Cdc25 {Thale cress (A	99.89
d1uara2	141	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.89
d1okga1	156	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.87
d1urha2	120	3-mercaptopyruvate sulfurtransferase {Escherichia	99.87
d1okga2	139	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.83
d1c25a_	161	CDC25a {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1ymka1	174	CDC25b {Human (Homo sapiens) [TaxId: 9606]}	99.78
d2gwfa1	135	Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Hum	99.71
d1hzma_	154	Erk2 binding domain of Mapk phosphatase mkp-3 {Hum	99.65
d1xria_	151	Putative phosphatase At1g05000 {Thale cress (Arabi	96.44
d1c4oa2	174	Nucleotide excision repair enzyme UvrB {Thermus th	94.93
d1ywfa1	272	Phosphotyrosine protein phosphatase PtpB {Mycobact	92.51
d1t5la2	181	Nucleotide excision repair enzyme UvrB {Bacillus c	92.26
d1fpza_	176	Kinase associated phosphatase (kap) {Human (Homo s	91.97
d1ohea2	182	Proline directed phosphatase CDC14b2 {Human (Homo	90.77
d1jr6a_	138	HCV helicase domain {Human hepatitis C virus (HCV)	89.73
d1rxda_	152	Protein tyrosine phosphatase type IVa {Human (Homo	88.56
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	87.93
d1hv8a2	155	Putative DEAD box RNA helicase {Archaeon Methanoco	87.61
d1m3ga_	145	Mapk phosphatase {Human (Homo sapiens), pac-1 [Tax	87.52
d1fuka_	162	Initiation factor 4a {Baker's yeast (Saccharomyces	86.22
d1t5ia_	168	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	86.01
d1oywa3	200	RecQ helicase domain {Escherichia coli [TaxId: 562	85.2
d1s2ma2	171	Putative ATP-dependent RNA helicase DHH1 {Baker's	84.88
d1mkpa_	144	Mapk phosphatase {Human (Homo sapiens), pyst1 (mkp	82.5
d2j0sa2	168	Probable ATP-dependent RNA helicase DDX48 {Human (	81.75
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	80.65

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.95  E-value=8.1e-29  Score=165.28  Aligned_cols=112  Identities=50%  Similarity=0.795  Sum_probs=100.3

Q ss_pred             ceeecHHHHHHHHhCCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCCcc
Q 031752           28 VITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSGAR  107 (153)
Q Consensus        28 ~~~i~~~~~~~~~~~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g~~  107 (153)
                      ...+++.++.++++++..|||||++.||..||||||  +|+|+...........+++.+.+...++++++||+||++|.|
T Consensus         7 p~~i~~~~a~~l~~~g~~liDvR~~~e~~~ghi~ga--~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~C~~G~r   84 (119)
T d1tq1a_           7 PSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGA--INVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGGR   84 (119)
T ss_dssp             CEEEEHHHHHHHHHHTCCEEEESCHHHHHHCCBTTB--EECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESSCSH
T ss_pred             CCccCHHHHHHHHHCcCEEEECCCHHHHHcCCCCCc--cchhhcccccccccccHHHHHHHHHhcCCCcEEEEEcCCcCc
Confidence            567899999999988889999999999999999999  999987665555555567878777767899999999999999


Q ss_pred             HHHHHHHHHHCCccceeeccccHHHHHhCCCcee
Q 031752          108 SLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVK  141 (153)
Q Consensus       108 a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~  141 (153)
                      |..+++.|.+.||+||++|.||+.+|.++|+|++
T Consensus        85 s~~a~~~L~~~G~~nv~~l~GG~~~W~~~g~P~e  118 (119)
T d1tq1a_          85 SIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK  118 (119)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECCHHHHHHHTCCCC
T ss_pred             HHHHHHHHHhcccCCeEEecChHHHHHHCCCCcc
Confidence            9999999999999999999999999999999986

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=2.1e-27  Score=161.83  Aligned_cols=108  Identities=21%  Similarity=0.432  Sum_probs=97.1

Q ss_pred             CcceeecHHHHHHHHhCC--CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEEEEe
Q 031752           26 AEVITVDVRAAKNLLESG--YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGC  102 (153)
Q Consensus        26 ~~~~~i~~~~~~~~~~~~--~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivi~c  102 (153)
                      ...+.|+++++.++++++  .+|||||++.||..||||||  +|+|..           ++...+.++ .+++++||+||
T Consensus        21 ~~~~~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpGA--i~ip~~-----------~l~~~~~~l~~~~~~~iV~~C   87 (136)
T d1yt8a1          21 RHTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGG--ISVPGA-----------ELVLRVAELAPDPRTRVIVNC   87 (136)
T ss_dssp             HCCCEECHHHHHHHHHTTCSEEEEECSCHHHHHHSBCTTC--EECCGG-----------GHHHHHHHHCCSTTSEEEEEC
T ss_pred             cCCCccCHHHHHHHHhcCCCcEEEEcCChhhccceecCCc--hhhhhh-----------HHHHHhhcccccccceEEEEc
Confidence            345689999999999653  78999999999999999999  999996           777778777 56788999999


Q ss_pred             CCCccHHHHHHHHHHCCccc-eeeccccHHHHHhCCCceecCCCC
Q 031752          103 QSGARSLHATADLLGAGFKH-VSNFGGGHMAWVQNGLKVKAREKP  146 (153)
Q Consensus       103 ~~g~~a~~~~~~L~~~G~~~-v~~l~gG~~~w~~~g~~~~~~~~~  146 (153)
                      ++|.+|..++..|.+.||.| |++|.||+.+|+.+|+|++++...
T Consensus        88 ~~g~rs~~aa~~L~~~G~~~~V~~L~GG~~~W~~~G~pve~g~~~  132 (136)
T d1yt8a1          88 AGRTRSIIGTQSLLNAGIPNPVAALRNGTIGWTLAGQQLEHGQTR  132 (136)
T ss_dssp             SSSHHHHHHHHHHHHTTCSSCEEEETTHHHHHHHTTCCCBCSCCC
T ss_pred             CCCCchHHHHHHHHHcCCCceEEEeCCcHHHHHHCCCCceeCCCC
Confidence            99999999999999999986 999999999999999999998753

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=3.8e-27  Score=154.58  Aligned_cols=103  Identities=23%  Similarity=0.353  Sum_probs=91.4

Q ss_pred             CCcceeecHHHHHHHHhCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeC
Q 031752           25 GAEVITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQ  103 (153)
Q Consensus        25 ~~~~~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~  103 (153)
                      +..+..|+++++.++++++ .+|||||++.||..||||||  +|+|..           ++...+..+ +++++||+||.
T Consensus         1 m~~~~~Is~~e~~~~l~~~~~~liDvR~~~e~~~ghI~gA--~~ip~~-----------~l~~~~~~~-~~~~~ivv~c~   66 (108)
T d1gmxa_           1 MDQFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQA--FHLTND-----------TLGAFMRDN-DFDTPVMVMCY   66 (108)
T ss_dssp             CCSCEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTC--EECCHH-----------HHHHHHHHS-CTTSCEEEECS
T ss_pred             CCCCCEeCHHHHHHHHHCCCeEEEECCCHHHHHhcCCCCc--ccccch-----------hHHHHhhhc-cccCcccccCC
Confidence            3567889999999999764 89999999999999999999  999995           666666654 89999999999


Q ss_pred             CCccHHHHHHHHHHCCccceeeccccHHHHHhCCCceec
Q 031752          104 SGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKA  142 (153)
Q Consensus       104 ~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~  142 (153)
                      +|.+|..++..|.+.||+||++|.||+.+|.++ +|.+.
T Consensus        67 ~g~rs~~~a~~L~~~G~~~v~~l~GG~~~W~~~-~p~e~  104 (108)
T d1gmxa_          67 HGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAEV  104 (108)
T ss_dssp             SSSHHHHHHHHHHHHTCSSEEEETTHHHHHHHH-CGGGE
T ss_pred             CChHHHHHHHHHHHcCCCCEEEEcChHHHHHHc-CCCcc
Confidence            999999999999999999999999999999754 77653

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

Probab=99.93  E-value=3.6e-26  Score=155.82  Aligned_cols=112  Identities=25%  Similarity=0.363  Sum_probs=95.5

Q ss_pred             hhcCCcceeecHHHHHHHHhC--CCeEEecCChhhhhcCC---CCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCC
Q 031752           22 RSSGAEVITVDVRAAKNLLES--GYGYLDVRTAEEFKEGH---VDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEE   95 (153)
Q Consensus        22 ~~~~~~~~~i~~~~~~~~~~~--~~~iIDvR~~~e~~~gh---i~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~   95 (153)
                      ..+.+.+..|+++++.+++++  +.+|||||++.||+.+|   |+|+  +++|..           .+...+... ++++
T Consensus        16 ~~a~~~~~~Isp~e~~~ll~~~~~~~lIDvR~~~E~~~~hip~i~~a--~~ip~~-----------~l~~~~~~~~~~~~   82 (137)
T d1qxna_          16 KAAKADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNY--KHMSRG-----------KLEPLLAKSGLDPE   82 (137)
T ss_dssp             HHHHHSSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSE--EECCTT-----------TSHHHHHHHCCCTT
T ss_pred             HHHHccCCEEcHHHHHHHHHcCcCEEEEECCcHHHHHHhcccccccc--ccCCcc-----------cccccccccccCcc
Confidence            445667889999999999964  38999999999999998   5556  888874           444455444 6899


Q ss_pred             CeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCCC
Q 031752           96 DRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKP  146 (153)
Q Consensus        96 ~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~  146 (153)
                      ++||+||.+|.+|..++..|.+.||+||++|.||+.+|.++|+|+......
T Consensus        83 ~~ivvyC~~G~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~P~~~~~~~  133 (137)
T d1qxna_          83 KPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDRSHH  133 (137)
T ss_dssp             SCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEECCCCC
T ss_pred             cceeeeecccchHHHHHHHHHHcCCCcEEEecCHHHHHHHcCCCCCCCCcc
Confidence            999999999999999999999999999999999999999999999866543

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=4.9e-26  Score=158.43  Aligned_cols=108  Identities=22%  Similarity=0.293  Sum_probs=96.5

Q ss_pred             CcceeecHHHHHHHHhCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCC
Q 031752           26 AEVITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQS  104 (153)
Q Consensus        26 ~~~~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~  104 (153)
                      .....|+++++.++++++ .+|||||+..||..||||||  +|+|..           ++....... +++++||+||.+
T Consensus         2 P~~~~Is~~el~~~l~~~~~~ivDvR~~~e~~~ghIpga--~~~~~~-----------~~~~~~~~~-~~~~~vv~~c~~   67 (157)
T d1yt8a3           2 PRADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGA--AWVLRS-----------QLKQALERL-GTAERYVLTCGS   67 (157)
T ss_dssp             CCCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTC--EECCGG-----------GHHHHHHHH-CCCSEEEEECSS
T ss_pred             CCCCEECHHHHHHHHhCCCeEEEEeCCHHHHhhcccccc--eecccc-----------ccccccccc-ccCcceeeccCC
Confidence            456789999999999865 88999999999999999999  999986           565555554 789999999999


Q ss_pred             CccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCCCC
Q 031752          105 GARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKPA  147 (153)
Q Consensus       105 g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~~  147 (153)
                      |.+|..+++.|..+||.||++|.||+.+|.++|+|++++...+
T Consensus        68 g~rs~~~a~~l~~~G~~~v~~L~GG~~~W~~aGlp~~~~~~~~  110 (157)
T d1yt8a3          68 SLLARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTEDGESLL  110 (157)
T ss_dssp             SHHHHHHHHHHHHHHCSCEEEETTHHHHHHHTTCCCBCSSCCB
T ss_pred             cchHHHHHHHHhcccCceEEEecCCHHHHhhCCCCCcCCCCCC
Confidence            9999999999999999999999999999999999999877544

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=3.4e-25  Score=143.32  Aligned_cols=97  Identities=20%  Similarity=0.272  Sum_probs=85.1

Q ss_pred             eeecHHHHHHHHh--CCCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEEEEeCCC
Q 031752           29 ITVDVRAAKNLLE--SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVGCQSG  105 (153)
Q Consensus        29 ~~i~~~~~~~~~~--~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivi~c~~g  105 (153)
                      ..+|.+|+.+.+.  ++.+|||||++.||..||||||  +|+|..           .+...+... .+++++|++||.+|
T Consensus         2 ~v~S~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgA--i~~~~~-----------~~~~~~~~~~~~~~~~vv~~~~~g   68 (101)
T d1yt8a2           2 AVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFA--ANLPLS-----------RLELEIHARVPRRDTPITVYDDGE   68 (101)
T ss_dssp             EEECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTC--EECCGG-----------GHHHHHHHHSCCTTSCEEEECSSS
T ss_pred             CcCcHHHHHHHHHCCCCeEEEECCCHHHHHhccCCCc--cccccc-----------chhhhhhhcccccCceeeeccchh
Confidence            4578899998774  3488999999999999999999  999985           555555555 56788999999999


Q ss_pred             ccHHHHHHHHHHCCccceeeccccHHHHHhCCC
Q 031752          106 ARSLHATADLLGAGFKHVSNFGGGHMAWVQNGL  138 (153)
Q Consensus       106 ~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~  138 (153)
                      .++..+++.|.++||+||++|+||+.+|+++|.
T Consensus        69 ~~s~~~~~~l~~~G~~nV~~l~GG~~~W~~aGg  101 (101)
T d1yt8a2          69 GLAPVAAQRLHDLGYSDVALLDGGLSGWRNAGG  101 (101)
T ss_dssp             SHHHHHHHHHHHTTCSSEEEETTHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHcCCCcEEEeCChHHHHHHCcC
Confidence            999999999999999999999999999999873

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.92  E-value=2.2e-25  Score=151.75  Aligned_cols=115  Identities=19%  Similarity=0.323  Sum_probs=96.7

Q ss_pred             CCcceeecHHHHHHHHhCC-CeEEecCChhhhh--------cCCCCCcceeCcccccc-CCCCCCC-ChHHHHHHHhh-c
Q 031752           25 GAEVITVDVRAAKNLLESG-YGYLDVRTAEEFK--------EGHVDAAKIFNIPYMFN-TPEGRVK-NPDFLKKVRSL-C   92 (153)
Q Consensus        25 ~~~~~~i~~~~~~~~~~~~-~~iIDvR~~~e~~--------~ghi~ga~~i~ip~~~~-~~~~~~~-~~~~~~~~~~~-~   92 (153)
                      ....+.++.+++.+.++++ .+|||+|++.||.        .||||||  +|+|+..+ ++.+.+. .+++.+.+.+. +
T Consensus         8 ~~~~~~~s~d~l~~~l~~~~~~liD~R~~~ey~G~~~~~~~~GhIPGA--inip~~~~~~~~~~~~~~~~l~~~~~~~gi   85 (136)
T d1e0ca2           8 LHDEPTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGA--VNFEWTAAMDPSRALRIRTDIAGRLEELGI   85 (136)
T ss_dssp             CCSTTBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTTC--EECCGGGGEEGGGTTEECTTHHHHHHHTTC
T ss_pred             cCCCceEcHHHHHHhhCCCCeEEEECcChHHhcccccccccCCcchhH--hhhhhhhhhccccccchhHHHhhhhhhccc
Confidence            3455689999999999764 8899999999996        6899999  99998765 3333332 34677777777 8


Q ss_pred             cCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHhC-CCcee
Q 031752           93 KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQN-GLKVK  141 (153)
Q Consensus        93 ~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~-g~~~~  141 (153)
                      +++++||+||++|.+|..+++.|+.+||+||++|+||+.+|.+. +.|++
T Consensus        86 ~~~~~vV~yC~~G~~a~~~~~~l~~~G~~~v~~ydGg~~eW~~~~~~PvE  135 (136)
T d1e0ca2          86 TPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVE  135 (136)
T ss_dssp             CTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHHHTTCTTCCCB
T ss_pred             CCCCceEEeCCChHHHHHHHHHHHHcCCCCcEEecCCHHHHhcCCCCCCc
Confidence            99999999999999999999999999999999999999999764 88876

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=8.4e-25  Score=150.64  Aligned_cols=118  Identities=19%  Similarity=0.232  Sum_probs=97.0

Q ss_pred             eeecHHHHHHHHhC-CCeEEecC----------ChhhhhcCCCCCcceeCccccccC-CC----CCCCC-hHHHHHHHhh
Q 031752           29 ITVDVRAAKNLLES-GYGYLDVR----------TAEEFKEGHVDAAKIFNIPYMFNT-PE----GRVKN-PDFLKKVRSL   91 (153)
Q Consensus        29 ~~i~~~~~~~~~~~-~~~iIDvR----------~~~e~~~ghi~ga~~i~ip~~~~~-~~----~~~~~-~~~~~~~~~~   91 (153)
                      ..++++++.+.+++ +.+|||+|          ...+|..||||||  +++|+..+. +.    ..++. +++.+.+.++
T Consensus         3 ~lVs~~wL~~~L~~~~v~iiD~r~~~~~~~~~~~~~~y~~gHIPGA--i~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~   80 (147)
T d1urha1           3 WFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGA--VFFDIEALSDHTSPLPHMLPRPETFAVAMREL   80 (147)
T ss_dssp             CEECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTC--EECCGGGGSCSSSSSSSCCCCHHHHHHHHHHT
T ss_pred             ccCcHHHHHHHhCCCCeEEEEeeCCCCCccCccHHHHHHhCCcccc--EEeehhhhccccccccccCCCHHHHHHHHHHh
Confidence            46899999999976 48999999          3468999999999  888876551 11    22333 4666677777


Q ss_pred             -ccCCCeEEEEeCC-CccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCCCCC
Q 031752           92 -CKEEDRLVVGCQS-GARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKPAD  148 (153)
Q Consensus        92 -~~~~~~ivi~c~~-g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~~~  148 (153)
                       ++++++||+||.+ +..|.++++.|+.+||+||++|+||+.+|+++|+|++++.++.+
T Consensus        81 Gi~~~~~vVvY~~~~~~~A~r~~~~L~~~G~~~V~vLdGG~~~W~~~g~pv~~~~~~~~  139 (147)
T d1urha1          81 GVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEEGAVELP  139 (147)
T ss_dssp             TCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBBSCCCCC
T ss_pred             CcCCCCeEEEEeCCCcccchhHHHHHHhhcccceEEeCChHHHHHHcCCCccCCCCCCC
Confidence             9999999999985 45688999999999999999999999999999999999886554

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=2.7e-24  Score=148.38  Aligned_cols=120  Identities=20%  Similarity=0.196  Sum_probs=97.6

Q ss_pred             cceeecHHHHHHHHhC-----CCeEEecC--------ChhhhhcCCCCCcceeCccccccCC-----CCCCC-ChHHHHH
Q 031752           27 EVITVDVRAAKNLLES-----GYGYLDVR--------TAEEFKEGHVDAAKIFNIPYMFNTP-----EGRVK-NPDFLKK   87 (153)
Q Consensus        27 ~~~~i~~~~~~~~~~~-----~~~iIDvR--------~~~e~~~ghi~ga~~i~ip~~~~~~-----~~~~~-~~~~~~~   87 (153)
                      ....|+++++.+.+++     +++|||||        ...+|.+||||||  +++++..+..     ...+. ...|.+.
T Consensus         6 ~~~lVs~~wL~~~L~~~~~~~~~~IiD~r~~~~~~~~~~~~y~~gHIPGA--v~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (149)
T d1rhsa1           6 YRALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGA--SFFDIEECRDKASPYEVMLPSEAGFADY   83 (149)
T ss_dssp             CCSEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTC--EECCTTTSSCTTSSSSSCCCCHHHHHHH
T ss_pred             CCCccCHHHHHHHHhccCCCCCEEEEEecCcCCCCcchHHHHHHhcccCc--eeccHHhhcccccchhhhhhhhHHHHHH
Confidence            4467899999999973     37899999        4678999999999  8888765421     12222 3367777


Q ss_pred             HHhh-ccCCCeEEEEeCC---CccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCCCCC
Q 031752           88 VRSL-CKEEDRLVVGCQS---GARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKPAD  148 (153)
Q Consensus        88 ~~~~-~~~~~~ivi~c~~---g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~~~  148 (153)
                      +.+. ++++++||+||++   +..+.++++.|+.+||+||++|+||+.+|+++|+|++++.+.++
T Consensus        84 l~~~Gi~~~~~vVvy~~~~~~~~~a~r~~w~L~~~G~~~V~vLdGG~~~W~~~G~pv~~~~~~~~  148 (149)
T d1rhsa1          84 VGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTSEPSRPE  148 (149)
T ss_dssp             HHHTTCCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCSCCCCC
T ss_pred             HhhhhccCCceeEEeeccCCcchhhhHHHHHHHHcCCCceEEeCCcHHHHHHCcCcccCCCCCCC
Confidence            7777 9999999999974   45689999999999999999999999999999999998876554

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.91  E-value=4.2e-24  Score=144.36  Aligned_cols=116  Identities=16%  Similarity=0.159  Sum_probs=91.3

Q ss_pred             eeecHHHHHHHHhC-CCeEEecCChhhhhcCCCCCcceeCccccccCCC-----CCCCChH-HHHHHHhh-ccCCCeEEE
Q 031752           29 ITVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPE-----GRVKNPD-FLKKVRSL-CKEEDRLVV  100 (153)
Q Consensus        29 ~~i~~~~~~~~~~~-~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~-----~~~~~~~-~~~~~~~~-~~~~~~ivi  100 (153)
                      ..|+++++.+++++ +++|||||++.+|..||||||  +|+|...+...     ......+ +....... ......+++
T Consensus         9 ~lIs~~el~~~l~~~~~viiDvR~~~ey~~gHIpgA--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   86 (135)
T d1e0ca1           9 LVIEPADLQARLSAPELILVDLTSAARYAEGHIPGA--RFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVV   86 (135)
T ss_dssp             SEECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTC--EECCGGGGSCCCTTCTTSCCCHHHHHHHHHHHTCCTTCEEEE
T ss_pred             cEeeHHHHHHHhcCCCeEEEECCCHHHHhcccCccc--cccchhhhhhcccccchhhcchhhhhhhhccccccccccccc
Confidence            45899999999976 488999999999999999999  89887665211     1122222 23333333 567777888


Q ss_pred             EeC-CCccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCCC
Q 031752          101 GCQ-SGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKP  146 (153)
Q Consensus       101 ~c~-~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~  146 (153)
                      ||. ++.++.++++.|+..||+||++|+||+.+|+++|+|++++.+.
T Consensus        87 ~~~~~~~~~~~~~~~l~~~G~~~V~~l~GG~~~W~~~g~p~~~~~p~  133 (135)
T d1e0ca1          87 YDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSRELPA  133 (135)
T ss_dssp             ECSSSSHHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCCCCC
T ss_pred             cccccCccchhhHHHHHhccCCCEEEecChHHHHHHCCCCCCCCCCC
Confidence            876 5667889999999999999999999999999999999987764

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=7.5e-25  Score=147.96  Aligned_cols=104  Identities=23%  Similarity=0.251  Sum_probs=89.2

Q ss_pred             CcceeecHHHHHHHHhCC---CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-ccCCCeEEEE
Q 031752           26 AEVITVDVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVVG  101 (153)
Q Consensus        26 ~~~~~i~~~~~~~~~~~~---~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivi~  101 (153)
                      ..+..|+++++.++++++   .+|||||++.||..||||||  +|+|+.           ++....... .+++++||+|
T Consensus        20 ~~~~~I~~~e~~~~l~~~~~~~~liDvR~~~e~~~ghipga--i~~p~~-----------~~~~~~~~~~~~~~~~ivl~   86 (130)
T d1yt8a4          20 AGVERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGS--RSTPGG-----------QLVQETDHVASVRGARLVLV   86 (130)
T ss_dssp             HTCEEECHHHHHHHHHCTTSCEEEEECSCHHHHHHCBCTTC--EECCHH-----------HHHHSHHHHCCSBTCEEEEE
T ss_pred             cCCcccCHHHHHHHHHccCCCEEEEECCCcHHHhcCccCCc--cccccc-----------ccccccccccCCccceEEee
Confidence            357899999999999753   58999999999999999999  999995           555544444 6789999999


Q ss_pred             eCCCccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecC
Q 031752          102 CQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAR  143 (153)
Q Consensus       102 c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~  143 (153)
                      |.+|.||..++..|.++|| ++++|.||+.+|..++.....+
T Consensus        87 C~~G~rS~~aa~~L~~~G~-~v~~l~GG~~aw~~~~g~~~~p  127 (130)
T d1yt8a4          87 DDDGVRANMSASWLAQMGW-QVAVLDGLSEADFSERGAWSAP  127 (130)
T ss_dssp             CSSSSHHHHHHHHHHHTTC-EEEEECSCCGGGCCBCSSCCCC
T ss_pred             cCCCccHHHHHHHHHHcCC-CeEEEcCchHHHHHhcCCCCCC
Confidence            9999999999999999999 6999999999998876554443

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=8e-25  Score=150.10  Aligned_cols=117  Identities=20%  Similarity=0.258  Sum_probs=95.0

Q ss_pred             eeecHHHHHHHHhCC-CeEEecCC-hhhhhcCCCCCcceeCcccccc--CC-CCCCC-ChHHHHHHHhh-ccCCCeEEEE
Q 031752           29 ITVDVRAAKNLLESG-YGYLDVRT-AEEFKEGHVDAAKIFNIPYMFN--TP-EGRVK-NPDFLKKVRSL-CKEEDRLVVG  101 (153)
Q Consensus        29 ~~i~~~~~~~~~~~~-~~iIDvR~-~~e~~~ghi~ga~~i~ip~~~~--~~-~~~~~-~~~~~~~~~~~-~~~~~~ivi~  101 (153)
                      ..|+++++.+.++++ ++|||||. ..+|..||||||  +|+|+...  .+ ...+. .++|.+.+.++ ++++++||+|
T Consensus         7 ~lVs~~~l~~~l~~~~v~iiDvr~~~~~y~~gHIPgA--i~~~~~~~~~~~~~~~l~~~~~l~~~~~~~Gi~~~~~iVvy   84 (143)
T d1uara1           7 VLVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGA--QKIDWQRDFWDPVVRDFISEEEFAKLMERLGISNDTTVVLY   84 (143)
T ss_dssp             GEECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTC--EEECHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             ccCcHHHHHHHhCCCCeEEEECCCCHHHHhcCCCCCc--ccccccccccccccccchhhHHHHHHhhhhccCCCceEEEe
Confidence            578999999998764 88999995 788999999999  88876433  11 12222 33677777777 8999999999


Q ss_pred             eCCCc-cHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCCCC
Q 031752          102 CQSGA-RSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKPA  147 (153)
Q Consensus       102 c~~g~-~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~~  147 (153)
                      |+++. .|.++++.|+.+||++|++|+||+.+|+.+|+|++++.+..
T Consensus        85 ~~~~~~~a~~~~~~l~~~G~~~V~vldGG~~~W~~~g~p~~~~~~~~  131 (143)
T d1uara1          85 GDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLTTEVPSY  131 (143)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCBCCCCCC
T ss_pred             cCCCcccchhHHHHHHHhCCceEEEEcCcHHHHHHCCCCccCCCCCC
Confidence            98665 57889999999999999999999999999999999876444

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=7.4e-24  Score=145.37  Aligned_cols=115  Identities=21%  Similarity=0.376  Sum_probs=95.2

Q ss_pred             ceeecHHHHHHHHhC-CCeEEecCChhhhh------------cCCCCCcceeCcccccc-CCCCCCCChHHHHHHH-hh-
Q 031752           28 VITVDVRAAKNLLES-GYGYLDVRTAEEFK------------EGHVDAAKIFNIPYMFN-TPEGRVKNPDFLKKVR-SL-   91 (153)
Q Consensus        28 ~~~i~~~~~~~~~~~-~~~iIDvR~~~e~~------------~ghi~ga~~i~ip~~~~-~~~~~~~~~~~~~~~~-~~-   91 (153)
                      ...++.+++.+.+++ +.+|||+|++.+|.            .||||||  +|+|+..+ .+.+.+..++..+.+. +. 
T Consensus        10 ~~i~~~~ev~~~l~~~~~~iiD~R~~~ef~G~~~~~~~~~~~~GhIpgA--~~ip~~~~~~~~~~~~~~~~l~~~~~~~g   87 (144)
T d1rhsa2          10 SLLKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGS--VNMPFMNFLTEDGFEKSPEELRAMFEAKK   87 (144)
T ss_dssp             GGEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTC--EECCGGGGBCTTSCBCCHHHHHHHHHHTT
T ss_pred             HHeecHHHHHHHhcCCCcEEEECCCCHHHcCCCCCCccccceeeehhhh--hhcchhhhhhhhcccCCHHHHHHHHHHcC
Confidence            346799999888875 48999999999995            6999999  99998766 5556666665555444 44 


Q ss_pred             ccCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHhCC---CceecCC
Q 031752           92 CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQNG---LKVKARE  144 (153)
Q Consensus        92 ~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g---~~~~~~~  144 (153)
                      ++++++||+||++|.+|..++..|..+||++|++|+||+..|.+.+   .|++++.
T Consensus        88 i~~~~~iI~yC~sG~~A~~~~~~l~~lG~~~v~~YdGsw~eW~~~~~p~~pV~~G~  143 (144)
T d1rhsa2          88 VDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPETWVSQGK  143 (144)
T ss_dssp             CCTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHHHHHHSCGGGEEBTTB
T ss_pred             CCCCCCEEEEecccchHHHHHHHHHHcCCCCCEEeCCCHHHHhhcCCCCCCcCCCC
Confidence            8999999999999999999999999999999999999999999765   4555543

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.89  E-value=5.7e-24  Score=143.83  Aligned_cols=114  Identities=18%  Similarity=0.227  Sum_probs=89.5

Q ss_pred             CCcceeecHHHHHHHHhCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeC
Q 031752           25 GAEVITVDVRAAKNLLESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQ  103 (153)
Q Consensus        25 ~~~~~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~  103 (153)
                      ...+..|+++++.++++++ .+|||||++.||..||||||  +|+|+..+      .  +....+....++++++|+||.
T Consensus         4 ~~~v~~I~~~el~~~~~~~~v~iIDvR~~~e~~~ghIpgA--inip~~~~------~--~~~~~~~~~~~~~~~iv~~c~   73 (132)
T d1t3ka_           4 ARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGS--LHYASGSF------D--DKISHLVQNVKDKDTLVFHSA   73 (132)
T ss_dssp             CSSSEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSS--EEECCSSS------S--TTHHHHHHTCCSCCEEEESSS
T ss_pred             ccCCCEECHHHHHHHHhCCCeEEEEccCHHHHHhccCccc--ceeeeecc------c--ccccccccccccccceEEEec
Confidence            3457899999999998765 78999999999999999999  99999533      2  222333333577889999998


Q ss_pred             CC-ccHHHHHHHHH--------HCCccceeeccccHHHHHhCCCceecCCCCCC
Q 031752          104 SG-ARSLHATADLL--------GAGFKHVSNFGGGHMAWVQNGLKVKAREKPAD  148 (153)
Q Consensus       104 ~g-~~a~~~~~~L~--------~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~~~  148 (153)
                      .+ .++..++..|.        ..||+||++|.||+.+|.++|+|+.+....+.
T Consensus        74 ~~~~~~~~aa~~l~~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~pv~~~~~~p~  127 (132)
T d1t3ka_          74 LSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRCAEVPC  127 (132)
T ss_dssp             CCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSCCCSCSSC
T ss_pred             cccccchHHHHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHcCCCcccCCCCCC
Confidence            54 46666555443        46999999999999999999999998775543

>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=4.7e-23  Score=140.84  Aligned_cols=111  Identities=26%  Similarity=0.462  Sum_probs=89.5

Q ss_pred             cHHHHHHHH---hC-CCeEEecCChhhhh----------------cCCCCCcceeCcccccc-CCCCCCCChH-HHHHHH
Q 031752           32 DVRAAKNLL---ES-GYGYLDVRTAEEFK----------------EGHVDAAKIFNIPYMFN-TPEGRVKNPD-FLKKVR   89 (153)
Q Consensus        32 ~~~~~~~~~---~~-~~~iIDvR~~~e~~----------------~ghi~ga~~i~ip~~~~-~~~~~~~~~~-~~~~~~   89 (153)
                      ..+++.+.+   ++ +.+|||+|++.+|.                .||||||  +|+|+..+ +..+.+..++ +.+.+.
T Consensus         5 ~~~~v~~~~~~~~~~~~~lvD~R~~~ey~G~~~~~~~~~~~~~~r~GhIpgA--~nlp~~~~~~~~~~~~~~~~~~~~~~   82 (141)
T d1uara2           5 YRDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGA--KNIPWAKAVNPDGTFKSAEELRALYE   82 (141)
T ss_dssp             CHHHHHHHHHHHHTTSEEEEECSCHHHHHTCC--------CCCSCCSBCTTC--EECCGGGGBCTTSCBCCHHHHHHHHG
T ss_pred             cHHHHHHHHHHhhCCCcEEEeCCCHHHcCCccCcccccCcccceeeeEeCCc--cccccccccccccccccHHHHHHHHH
Confidence            445555444   33 47899999999996                6999999  99998776 5555555554 444554


Q ss_pred             hh-ccCCCeEEEEeCCCccHHHHHHHHHH-CCccceeeccccHHHHHh-CCCceecCC
Q 031752           90 SL-CKEEDRLVVGCQSGARSLHATADLLG-AGFKHVSNFGGGHMAWVQ-NGLKVKARE  144 (153)
Q Consensus        90 ~~-~~~~~~ivi~c~~g~~a~~~~~~L~~-~G~~~v~~l~gG~~~w~~-~g~~~~~~~  144 (153)
                      .. ++++++||+||++|.+|..++..|.. +||+||++|+||+.+|.+ .+.|++++.
T Consensus        83 ~~gi~~d~~vV~yC~~G~~As~~~~~l~~~~G~~~v~~ydGs~~eW~~~~~~Pv~~g~  140 (141)
T d1uara2          83 PLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPIAKGE  140 (141)
T ss_dssp             GGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTCCCBCSC
T ss_pred             HhCCCCCCeEEEEecCcchHHHHHHHHHHHcCCCCeeEeCCcHHHHhcCCCCCcccCC
Confidence            54 89999999999999999999999986 899999999999999977 699999875

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.87  E-value=4.3e-22  Score=137.89  Aligned_cols=116  Identities=18%  Similarity=0.213  Sum_probs=92.7

Q ss_pred             ceeecHHHHHHHHhCCCeEEecC--------ChhhhhcCCCCCcceeCcccccc--C--CCC----CCCC-hHHHHHHHh
Q 031752           28 VITVDVRAAKNLLESGYGYLDVR--------TAEEFKEGHVDAAKIFNIPYMFN--T--PEG----RVKN-PDFLKKVRS   90 (153)
Q Consensus        28 ~~~i~~~~~~~~~~~~~~iIDvR--------~~~e~~~ghi~ga~~i~ip~~~~--~--~~~----~~~~-~~~~~~~~~   90 (153)
                      ...|+++++.+.+++ +.|||||        ...+|..||||||  +++++...  .  +..    .+++ .+|.+.+.+
T Consensus         7 ~~lvs~~~L~~~l~d-~~iiD~r~~l~~~~~g~~~Y~~gHIPGA--~~~d~~~~l~~~~~~~~~~~~lP~~~~~~~~l~~   83 (156)
T d1okga1           7 KVFLDPSEVADHLAE-YRIVDCRYSLKIKDHGSIQYAKEHVKSA--IRADVDTNLSKLVPTSTARHPLPPCAEFIDWCMA   83 (156)
T ss_dssp             CCEECHHHHTTCGGG-SEEEECCCCSSSTTTTTTHHHHCEETTC--EECCTTTTSCCCCTTCCCSSCCCCHHHHHHHHHH
T ss_pred             CcEeCHHHHHHhcCC-CEEEEeeccCCCCcchHHHHHHcCCCCC--eEcCHHHhcccccCCCCCccccCCHHHHHHHHHh
Confidence            357999999888765 8999999        4688999999999  77665432  1  111    1333 477778888


Q ss_pred             h-ccCCCeEEEEeCC-C-ccHHHHHHHHHHCCccceeeccccHHHHHhCCCceecCCCCC
Q 031752           91 L-CKEEDRLVVGCQS-G-ARSLHATADLLGAGFKHVSNFGGGHMAWVQNGLKVKAREKPA  147 (153)
Q Consensus        91 ~-~~~~~~ivi~c~~-g-~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~g~~~~~~~~~~  147 (153)
                      + ++++++||+||+. | ..+.++++.|+.+|+ +|++|+||+.+|+++|+|++++.+..
T Consensus        84 lGI~~~~~VVvYd~~~g~~~A~R~~w~L~~~G~-~v~iLdGG~~aW~~~G~pv~t~~p~~  142 (156)
T d1okga1          84 NGMAGELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLEMESGEPSS  142 (156)
T ss_dssp             TTCSSSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCCEECSCCCS
T ss_pred             ccccCCceEEEEeCCCCchHHHHHHHHHHHcCC-eeEEeCCCHHHHHHCCCCCCCCCCCC
Confidence            7 9999999999864 3 468899999999997 69999999999999999999886543

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=2.6e-22  Score=133.16  Aligned_cols=102  Identities=22%  Similarity=0.351  Sum_probs=85.0

Q ss_pred             eecHHHHHHHHhC-CCeEEecCChhhhh-----------cCCCCCcceeCccccccCCCCCCCCh-HHHHHHHhh-ccCC
Q 031752           30 TVDVRAAKNLLES-GYGYLDVRTAEEFK-----------EGHVDAAKIFNIPYMFNTPEGRVKNP-DFLKKVRSL-CKEE   95 (153)
Q Consensus        30 ~i~~~~~~~~~~~-~~~iIDvR~~~e~~-----------~ghi~ga~~i~ip~~~~~~~~~~~~~-~~~~~~~~~-~~~~   95 (153)
                      .++.+|+....++ +.+|||+|++.+|.           .||||||  +|+|+........+... ++...+... ++++
T Consensus         5 ~~~~~ev~~~~~~~~~~liD~R~~~~f~G~~~~~~~~~~~G~Ipga--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   82 (120)
T d1urha2           5 VVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGA--LNVPWTELVREGELKTTDELDAIFFGRGVSYD   82 (120)
T ss_dssp             BCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSSCTTC--EECCGGGGBSSSSBCCHHHHHHHHHTTTCCSS
T ss_pred             HccHHHHHHHhhCCCcEEEeCCCHHHcCcccCCccccccccccccc--chhchhhcccccccCCHHHhhhhhhhcccCcc
Confidence            4678888887765 48999999999995           6999999  99998777555555544 444455555 8999


Q ss_pred             CeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHHH
Q 031752           96 DRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAW  133 (153)
Q Consensus        96 ~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w  133 (153)
                      ++||+||++|.+|..++..|+.+||+||++|+||+.+|
T Consensus        83 ~~ii~yC~sG~~A~~~~~~L~~lG~~~v~~y~Gs~~eW  120 (120)
T d1urha2          83 KPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW  120 (120)
T ss_dssp             SCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-
T ss_pred             CceEEEccchhHHHHHHHHHHHcCCCCceEcCCChhhC
Confidence            99999999999999999999999999999999999988

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.83  E-value=1.4e-21  Score=133.09  Aligned_cols=101  Identities=18%  Similarity=0.288  Sum_probs=79.2

Q ss_pred             hCCCeEEecCChhhhh-----------cCCCCCcceeCcccccc-C---CCCCCCCh-HHHHHHHhh------ccCCCeE
Q 031752           41 ESGYGYLDVRTAEEFK-----------EGHVDAAKIFNIPYMFN-T---PEGRVKNP-DFLKKVRSL------CKEEDRL   98 (153)
Q Consensus        41 ~~~~~iIDvR~~~e~~-----------~ghi~ga~~i~ip~~~~-~---~~~~~~~~-~~~~~~~~~------~~~~~~i   98 (153)
                      ..+.+|||+|++.+|.           .||||||  +|+|+..+ .   ....+..+ ++.+.+...      ++++++|
T Consensus        10 ~p~~vlvD~R~~~ef~G~~~~~~~~~~~GHIpgA--vnip~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v   87 (139)
T d1okga2          10 PPQAIITDARSADRFASTVRPYAADKMPGHIEGA--RNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVVQGAGDAADLSSF   87 (139)
T ss_dssp             CTTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTC--EECCGGGGEECCSSSCEECCHHHHHHHHHTTCC-----CCCTTS
T ss_pred             CCCeEEEeCCCHHHhCCcCCCcccCCcCceeCCC--eeccchhhccccccccccCCHHHhhhhhhhhhhhccCCCCCCeE
Confidence            3458999999999997           7999999  99998654 1   12223333 344444332      5677899


Q ss_pred             EEEeCCCccHHHHHHHHHHCCccceeeccccHHHHHh-CCCceecC
Q 031752           99 VVGCQSGARSLHATADLLGAGFKHVSNFGGGHMAWVQ-NGLKVKAR  143 (153)
Q Consensus        99 vi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~w~~-~g~~~~~~  143 (153)
                      |+||++|.+|..++..|..+||++|++|+||+.+|.+ .+.|++++
T Consensus        88 V~yC~sG~~Aa~~~~~L~~~G~~~v~vydGsw~eW~~~~~~Pv~~~  133 (139)
T d1okga2          88 VFSCGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIMRS  133 (139)
T ss_dssp             EEECSSSSTHHHHHHHHHHTTSCCCEECSSHHHHHHHHTHHHHHHH
T ss_pred             EEECCCcHHHHHHHHHHHHhCCCCccCCCCCHHHHhCCCCCCeeec
Confidence            9999999999999999999999999999999999976 58888764

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.1e-20  Score=131.61  Aligned_cols=107  Identities=13%  Similarity=0.182  Sum_probs=83.5

Q ss_pred             cCCcceeecHHHHHHHHhC-------CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-----
Q 031752           24 SGAEVITVDVRAAKNLLES-------GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-----   91 (153)
Q Consensus        24 ~~~~~~~i~~~~~~~~~~~-------~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-----   91 (153)
                      .......|+++++.+++++       +++|||||++.||..|||+||  +|+|..          ..+.+.+.+.     
T Consensus        18 ~~~~~k~Is~~~l~~ll~~~~~~~~~~~~IIDvR~~~Ey~~gHI~gA--inip~~----------~~~~~~l~~~~~~~~   85 (161)
T d1c25a_          18 KHQDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGA--VNLHME----------EEVEDFLLKKPIVPT   85 (161)
T ss_dssp             SCTTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTC--EECCSH----------HHHHHHTTTSCCCCC
T ss_pred             CCCCCCccCHHHHHHHHhhhhhcccCCEEEEECCCHHHHHhhhcCCc--EEcCcH----------HHHHHHHhhhhhhhh
Confidence            4566788999999999963       378999999999999999999  999974          1222333222     


Q ss_pred             ccCCCeEEEEeC-CCccHHHHHHHHHHC----------CccceeeccccHHHHHhCCCceec
Q 031752           92 CKEEDRLVVGCQ-SGARSLHATADLLGA----------GFKHVSNFGGGHMAWVQNGLKVKA  142 (153)
Q Consensus        92 ~~~~~~ivi~c~-~g~~a~~~~~~L~~~----------G~~~v~~l~gG~~~w~~~g~~~~~  142 (153)
                      ..+...||+||. ++.|+..+++.|+..          ||++|++|.||+.+|.+..-++..
T Consensus        86 ~~~~~~vV~yc~~s~~rs~~~a~~l~~~~~~~~~~~~~g~~~V~vL~GG~~~w~~~~p~lc~  147 (161)
T d1c25a_          86 DGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKCQSYCE  147 (161)
T ss_dssp             TTSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHHHGGGEE
T ss_pred             hccCCeEEEEeccccccHHHHHHHHHHHHHhhccccccCCCeEEEECCcHHHHHHHCcCccC
Confidence            223445889998 788999999988753          999999999999999987655554

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.3e-19  Score=125.46  Aligned_cols=106  Identities=15%  Similarity=0.201  Sum_probs=82.6

Q ss_pred             cCCcceeecHHHHHHHHhC-------CCeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhh-----
Q 031752           24 SGAEVITVDVRAAKNLLES-------GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-----   91 (153)
Q Consensus        24 ~~~~~~~i~~~~~~~~~~~-------~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~-----   91 (153)
                      .+.....|+++++.+++++       +++|||||++.||..|||+||  +|+|..           ++..+....     
T Consensus        18 ~~~~~k~Isp~eL~~ll~~~~~~~~~~~lIID~R~~~Ey~~gHI~gA--iNi~~~-----------~~~~~~~~~~~~~~   84 (174)
T d1ymka1          18 KHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTA--VNLPLE-----------RDAESFLLKSPIAP   84 (174)
T ss_dssp             SSTTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTC--EECCSH-----------HHHHHHHHTTTCCC
T ss_pred             ccCCCcEeCHHHHHHHHhhhhhcccCCEEEEECCCchhhhhhhcCCc--cccCch-----------HHHHHHHHHhhhhh
Confidence            4566788999999999963       278999999999999999999  999985           444332211     


Q ss_pred             --ccCCCeEEEEeC-CCccHHHHHHHHHH----------CCccceeeccccHHHHHhCCCceec
Q 031752           92 --CKEEDRLVVGCQ-SGARSLHATADLLG----------AGFKHVSNFGGGHMAWVQNGLKVKA  142 (153)
Q Consensus        92 --~~~~~~ivi~c~-~g~~a~~~~~~L~~----------~G~~~v~~l~gG~~~w~~~g~~~~~  142 (153)
                        .++.+.||+||. ++.++..++..|+.          .||++|++|.||+.+|.+.--.+..
T Consensus        85 ~~~~~~~~vV~yc~~s~~r~~~~a~~l~~~~~~~~~~~~~g~~~VyiL~GGf~~f~~~yP~lCe  148 (174)
T d1ymka1          85 CSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCE  148 (174)
T ss_dssp             ----CEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGGEE
T ss_pred             hhhccCceEEEEeCCCCchHHHHHHHHHHHHHHhhhccccCCceEEEecCcHHHHHHhCchhcc
Confidence              345566999998 56688888888874          4999999999999999876544444

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=6.4e-18  Score=113.66  Aligned_cols=105  Identities=10%  Similarity=0.097  Sum_probs=73.5

Q ss_pred             eecHHHHHHHHhCC---CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCC------ChHHHHHHHhhccCCCeEEE
Q 031752           30 TVDVRAAKNLLESG---YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVK------NPDFLKKVRSLCKEEDRLVV  100 (153)
Q Consensus        30 ~i~~~~~~~~~~~~---~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ivi  100 (153)
                      .|+++|+.+++++.   .+|||||++.||..+|||||  +|||...+.......      .+...... ......+.||+
T Consensus         2 ~Is~~eL~~~l~~~~~~~liiDvR~~~ey~~~hI~gA--inip~~~l~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~iV~   78 (135)
T d2gwfa1           2 AITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHS--LSVPEEAISPGVTASWIEAHLPDDSKDTW-KKRGNVEYVVL   78 (135)
T ss_dssp             EECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTC--EECCGGGCCTTCCHHHHHHTSCHHHHHHH-HTTTTSSEEEE
T ss_pred             eECHHHHHHHHhcCCCCEEEEEecCCccccCCccCCe--EEeCHHHcccccchhhhhhhhhHHHHHHH-hccCCCCeEEE
Confidence            68999999999752   78999999999999999999  999987664321110      11111111 22457788999


Q ss_pred             EeCCCc-cH---HH----HHHHHH-----HCCccceeeccccHHHHHhCC
Q 031752          101 GCQSGA-RS---LH----ATADLL-----GAGFKHVSNFGGGHMAWVQNG  137 (153)
Q Consensus       101 ~c~~g~-~a---~~----~~~~L~-----~~G~~~v~~l~gG~~~w~~~g  137 (153)
                      ||..+. ++   ..    ..+.|.     ..|..+|++|+||+++|.+..
T Consensus        79 yd~~s~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~iL~GG~~~w~~~y  128 (135)
T d2gwfa1          79 LDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLCY  128 (135)
T ss_dssp             ECSSCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHHC
T ss_pred             EeCCCCcccHHHHHHHHHHHHHHhcccccccCCCcEEEEechHHHHHHhC
Confidence            998553 21   21    223333     357789999999999999873

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.5e-16  Score=109.27  Aligned_cols=105  Identities=16%  Similarity=0.135  Sum_probs=71.8

Q ss_pred             ceeecHHHHHHHHh---CCCeEEecCChhhhhcCCCCCcceeCcccccc----------CCCCCCCChHHHHHHHhhccC
Q 031752           28 VITVDVRAAKNLLE---SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFN----------TPEGRVKNPDFLKKVRSLCKE   94 (153)
Q Consensus        28 ~~~i~~~~~~~~~~---~~~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~----------~~~~~~~~~~~~~~~~~~~~~   94 (153)
                      ...+|++++.+.++   +..+|||||++.||..||||||  +|+|....          .....+...+....+.. ...
T Consensus        15 ~~~~s~e~L~~~l~~~~~~~lilDvR~~~ey~~~HI~gA--ini~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   91 (154)
T d1hzma_          15 AISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESA--INVAIPGIMLRRLQKGNLPVRALFTRGEDRDRFTR-RCG   91 (154)
T ss_dssp             SSBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSC--CCCCCSSHHHHTBCCSCCCTTTTSTTSHHHHHHHH-STT
T ss_pred             cCccCHHHHHHHHhcCCCCEEEEECCCHHHHhcCCCCCC--cccCcHHHHhhhccCCcccccccCCcHHHHHHHhh-cCC
Confidence            34588899999886   2388999999999999999999  88776433          00112222233333333 367


Q ss_pred             CCeEEEEeCCCc----------cHHHHHHHHHHCCccceeeccccHHHHHhC
Q 031752           95 EDRLVVGCQSGA----------RSLHATADLLGAGFKHVSNFGGGHMAWVQN  136 (153)
Q Consensus        95 ~~~ivi~c~~g~----------~a~~~~~~L~~~G~~~v~~l~gG~~~w~~~  136 (153)
                      ++.||+||..+.          +.....+.|...|+ +|++|+||+.+|.+.
T Consensus        92 ~~~VVvYd~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~v~iL~GG~~~w~~~  142 (154)
T d1hzma_          92 TDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGC-RAFYLEGGFSKFQAE  142 (154)
T ss_dssp             SSCEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTC-CCEECCCCHHHHHHH
T ss_pred             CCeEEEEcCCCchhhhhHHHHHHHHHHHHHHHhcCC-eEEEEeCcHHHHHHH
Confidence            788999998542          12233444555554 699999999999875

>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Putative phosphatase At1g05000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.44  E-value=0.0028  Score=41.51  Aligned_cols=96  Identities=10%  Similarity=0.023  Sum_probs=53.8

Q ss_pred             ecHHHHHHHHhCC-CeEEecCChhhhhcC----CCCCcceeCccccccCCCCCCCChHHHHHHHhh--ccCCCeEEEEeC
Q 031752           31 VDVRAAKNLLESG-YGYLDVRTAEEFKEG----HVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVVGCQ  103 (153)
Q Consensus        31 i~~~~~~~~~~~~-~~iIDvR~~~e~~~g----hi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivi~c~  103 (153)
                      .+++++..+.+-+ ..|||.|++.+....    .-.|...+++|.............+....+.+.  -..+.+++++|.
T Consensus        21 ~t~~~~~~L~~lgIktIidLr~~~e~~~~~~~~~~~gi~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlvHC~  100 (151)
T d1xria_          21 PDSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGIRLFQFGIEGNKEPFVNIPDHKIRMALKVLLDEKNHPVLIHCK  100 (151)
T ss_dssp             CCHHHHHHHHHHTCSEEEECCSSCCCHHHHHHHHHHTCEEEECCCCCCCGGGCCCCHHHHHHHHHHHHCGGGCSEEEECS
T ss_pred             CCHHHHHHHHHCCCCEEEECCCcchhhcccchhhhcCceEeecCccccccccccccHHHHHHHHHHHhcCCCCCEEEEcC
Confidence            5677775554446 689999986654321    112445677776544211111122333333332  246788999999


Q ss_pred             CCc-cHHHH-HHHHHHCCccceeec
Q 031752          104 SGA-RSLHA-TADLLGAGFKHVSNF  126 (153)
Q Consensus       104 ~g~-~a~~~-~~~L~~~G~~~v~~l  126 (153)
                      .|. |+..+ +-.|...|.+.-.++
T Consensus       101 ~GkdRTG~v~a~~l~~~g~~~~~i~  125 (151)
T d1xria_         101 RGKHRTGCLVGCLRKLQKWCLTSIF  125 (151)
T ss_dssp             SSSSHHHHHHHHHHHHTTBCHHHHH
T ss_pred             CCchHHHHHHHHHHHHcCCCHHHHH
Confidence            885 66544 445566787643333

>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]

Probab=94.93  E-value=0.014  Score=39.32  Aligned_cols=48  Identities=15%  Similarity=0.160  Sum_probs=41.5

Q ss_pred             HHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031752           83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM  131 (153)
Q Consensus        83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~  131 (153)
                      ++.+++.+...+++++++||.+-..+...+..|.+.|+. +..+.|+++
T Consensus        19 dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~-a~~~Hg~~~   66 (174)
T d1c4oa2          19 DLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIR-ARYLHHELD   66 (174)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCC-EEEECTTCC
T ss_pred             HHHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCc-eEEEecccc
Confidence            566666665678999999999988999999999999998 889999874

>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Mycobacterial PtpB-like
domain: Phosphotyrosine protein phosphatase PtpB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.51  E-value=0.44  Score=33.53  Aligned_cols=45  Identities=22%  Similarity=0.398  Sum_probs=28.2

Q ss_pred             CcceeecHHHHHHHHhCC-CeEEecCChhhhhc---CCCC-CcceeCccc
Q 031752           26 AEVITVDVRAAKNLLESG-YGYLDVRTAEEFKE---GHVD-AAKIFNIPY   70 (153)
Q Consensus        26 ~~~~~i~~~~~~~~~~~~-~~iIDvR~~~e~~~---ghi~-ga~~i~ip~   70 (153)
                      .....++.++...+-+-+ ..|||.|++.|...   ..++ |....++|.
T Consensus        28 ~~l~~lt~~d~~~L~~lgI~tViDLRs~~E~~~~~~~~~~~~~~~~~~p~   77 (272)
T d1ywfa1          28 SELSRLDDAGRATLRRLGITDVADLRSSREVARRGPGRVPDGIDVHLLPF   77 (272)
T ss_dssp             SCCTTCCHHHHHHHHHHTCCEEEECCCHHHHHHHCSCCCCTTCEEEECCC
T ss_pred             CCcCcCCHHHHHHHHHCCCcEEEECCCHHHHhhcCCCCCCCCceEEEecC
Confidence            345667888876654335 68999999999743   2333 333445554

>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=92.26  E-value=0.071  Score=35.74  Aligned_cols=48  Identities=21%  Similarity=0.246  Sum_probs=40.2

Q ss_pred             HHHHHHHhhccCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031752           83 DFLKKVRSLCKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM  131 (153)
Q Consensus        83 ~~~~~~~~~~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~  131 (153)
                      ++..++.+.+.++..++++|++-..+..++..|...|+. +..+.|++.
T Consensus        19 ~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~-~~~~hg~~~   66 (181)
T d1t5la2          19 DLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIK-VAYLHSEIK   66 (181)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCC-EEEECSSCC
T ss_pred             HHHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcc-eeEecCCcc
Confidence            566666655567889999999988899999999999998 888999873

>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Kinase associated phosphatase (kap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.97  E-value=0.18  Score=33.33  Aligned_cols=82  Identities=17%  Similarity=0.171  Sum_probs=46.6

Q ss_pred             HHHHHHHHhCC-CeEEecCChhhhhcCCCC---------CcceeCccccccCCCCCCCCh----HHHHHHHhhccCCCeE
Q 031752           33 VRAAKNLLESG-YGYLDVRTAEEFKEGHVD---------AAKIFNIPYMFNTPEGRVKNP----DFLKKVRSLCKEEDRL   98 (153)
Q Consensus        33 ~~~~~~~~~~~-~~iIDvR~~~e~~~ghi~---------ga~~i~ip~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i   98 (153)
                      .+++..+.+.+ ..||..-+..|+....++         |-.++++|..+    ...+..    ++.+.+.+.+..+++|
T Consensus        37 ~~dl~~L~~~gi~~Vv~L~~~~E~~~~~~~~~~~~~~~~gi~~~~~p~~D----~~~p~~~~~~~~~~~i~~~l~~~~~V  112 (176)
T d1fpza_          37 QKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIAD----GGTPDIASCCEIMEELTTCLKNYRKT  112 (176)
T ss_dssp             HHHHHHHHHHTCCEEEECCCHHHHHHTTCTTHHHHHHHTTCEEEECCCCT----TCCCCHHHHHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHhCCCCEEEEeCChhhhhhcCCCcHHHHHHHcCCEEEeCCccC----CCchhhHHHHHHHHHHHHHHHcCCeE
Confidence            45565565555 578888887776544433         22345666532    222221    2333333336678899


Q ss_pred             EEEeCCCc-cHH-HHHHHHHHC
Q 031752           99 VVGCQSGA-RSL-HATADLLGA  118 (153)
Q Consensus        99 vi~c~~g~-~a~-~~~~~L~~~  118 (153)
                      +|+|..|. |+. .++.+|...
T Consensus       113 ~VHC~~G~gRtg~v~~~~Li~~  134 (176)
T d1fpza_         113 LIHSYGGLGRSCLVAACLLLYL  134 (176)
T ss_dssp             EEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEecCCCCchHHHHHHHHHHH
Confidence            99999774 665 445556543

>d1ohea2 c.45.1.1 (A:199-380) Proline directed phosphatase CDC14b2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Proline directed phosphatase CDC14b2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.77  E-value=0.76  Score=30.34  Aligned_cols=85  Identities=6%  Similarity=0.061  Sum_probs=46.7

Q ss_pred             eecHHHHHHHHh-CC-CeEEecCCh----hhhhcCCCCCcceeCccccccCCCCCCCChH-HHHHHHhhccCCCeEEEEe
Q 031752           30 TVDVRAAKNLLE-SG-YGYLDVRTA----EEFKEGHVDAAKIFNIPYMFNTPEGRVKNPD-FLKKVRSLCKEEDRLVVGC  102 (153)
Q Consensus        30 ~i~~~~~~~~~~-~~-~~iIDvR~~----~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ivi~c  102 (153)
                      .-+++++.+.++ .+ ..||+++.+    ..+....|   .++++|..+.    ..+..+ ..+.+....+.+.+|+|+|
T Consensus        44 ~~~~~~~l~~l~~~gi~~Ii~l~~~~~~~~~~~~~gi---~~~~~p~~D~----~~P~~~~i~~~i~~~~~~~~~V~VHC  116 (182)
T d1ohea2          44 QHSPETYIQYFKNHNVTTIIRLNKRMYDAKRFTDAGF---DHHDLFFADG----STPTDAIVKEFLDICENAEGAIAVHS  116 (182)
T ss_dssp             BCCTHHHHHHHHHTTEEEEEECSCCSSCTHHHHTTTC---EEEECCCCTT----CCCCHHHHHHHHHHHHSCSSEEEEEC
T ss_pred             ccCHHHHHHHHHhcCCCEEEEecCCCcCccccccCCc---EEEecCCCCC----CCcCHHHHHHHHHHHHcCCCcEEEEe
Confidence            334566666665 45 568999753    22222223   4566666422    222222 2333333356789999999


Q ss_pred             CCCc-cHH-HHHHHHH-HCCcc
Q 031752          103 QSGA-RSL-HATADLL-GAGFK  121 (153)
Q Consensus       103 ~~g~-~a~-~~~~~L~-~~G~~  121 (153)
                      ..|. |+. .++.+|. ..|++
T Consensus       117 ~~G~gRsgt~~a~yL~~~~~~~  138 (182)
T d1ohea2         117 KAGLGRTGTLIACYIMKHYRMT  138 (182)
T ss_dssp             SSSSHHHHHHHHHHHHHHHCCC
T ss_pred             CCCCcchHHHHHHHHHHHcCCC
Confidence            9885 765 4455554 45654

>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=89.73  E-value=0.099  Score=33.40  Aligned_cols=37  Identities=19%  Similarity=0.290  Sum_probs=31.9

Q ss_pred             CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031752           94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM  131 (153)
Q Consensus        94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~  131 (153)
                      ++.+.++||++...+..++..|...|+. +..+.+|+.
T Consensus        34 ~~~k~IVFc~t~~~ae~la~~L~~~G~~-~~~~H~~~~   70 (138)
T d1jr6a_          34 KGGRHLIFCHSKKKCDELAAKLVALGIN-AVAYYRGLD   70 (138)
T ss_dssp             TTSCEEEECSCHHHHHHHHHHHHHHTCE-EEEECTTCC
T ss_pred             CCCCEEEEeCcHHHHHHHHHHHhccccc-hhhhhccch
Confidence            5678899999999999999999999987 777887753

>d1rxda_ c.45.1.1 (A:) Protein tyrosine phosphatase type IVa {Human (Homo sapiens), pr-1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Protein tyrosine phosphatase type IVa
species: Human (Homo sapiens), pr-1 [TaxId: 9606]

Probab=88.56  E-value=0.29  Score=31.17  Aligned_cols=84  Identities=17%  Similarity=0.233  Sum_probs=44.2

Q ss_pred             ecHHHHHHHHhC-C-CeEEecCChh----hhhcCCCCCcceeCccccccCCCCCCCChH----HHHHHHhh--ccCCCeE
Q 031752           31 VDVRAAKNLLES-G-YGYLDVRTAE----EFKEGHVDAAKIFNIPYMFNTPEGRVKNPD----FLKKVRSL--CKEEDRL   98 (153)
Q Consensus        31 i~~~~~~~~~~~-~-~~iIDvR~~~----e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~i   98 (153)
                      -+..++.+.+.+ + ..||.+..+.    .+..-+|   ...++|..+.    ..++.+    +...+...  .+.+.+|
T Consensus        20 ~t~~~f~~~l~~~~i~~Iv~l~e~~y~~~~~~~~~i---~~~~~~~~d~----~~p~~~~~~~~~~~~~~~~~~~~~~~v   92 (152)
T d1rxda_          20 ATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGI---HVLDWPFDDG----APPSNQIVDDWLSLVKIKFREEPGCCI   92 (152)
T ss_dssp             GGHHHHHHHHHHTTEEEEEECSCCCSCCHHHHHTTC---EEEECCC--C----CCCCHHHHHHHHHHHHHHHHHSTTCEE
T ss_pred             hhHHHHHHHHHHhCCeEEeecccccCCchheeecce---EEEEeeCCCC----CCCCHHHHHHHHHHHHHHHHhCCCCCE
Confidence            355666666653 4 5688887532    2222222   3455665322    122222    22222222  3568899


Q ss_pred             EEEeCCCc-cHH-HHHHHHHHCCcc
Q 031752           99 VVGCQSGA-RSL-HATADLLGAGFK  121 (153)
Q Consensus        99 vi~c~~g~-~a~-~~~~~L~~~G~~  121 (153)
                      +|+|..|. |+. .++..|...|++
T Consensus        93 ~VHC~~G~gRsg~~~a~~l~~~~~~  117 (152)
T d1rxda_          93 AVHCVAGLGRAPVLVALALIEGGMK  117 (152)
T ss_dssp             EEECSSSSTTHHHHHHHHHHHTTCC
T ss_pred             EEEEcCCcccHHHHHHHHHHHhCcC
Confidence            99999764 654 556667767764

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=87.93  E-value=0.63  Score=30.16  Aligned_cols=47  Identities=15%  Similarity=0.297  Sum_probs=34.9

Q ss_pred             HHHHHHhh-ccCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031752           84 FLKKVRSL-CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM  131 (153)
Q Consensus        84 ~~~~~~~~-~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~  131 (153)
                      |.+.+... ++++++|+++. .|+.+.-++..|.+.|+.+++++.=..+
T Consensus         5 ~~~~l~~~~~~~~~~vlIlG-aGGaarai~~aL~~~g~~~I~I~nR~~~   52 (167)
T d1npya1           5 IVKLIEKYHLNKNAKVIVHG-SGGMAKAVVAAFKNSGFEKLKIYARNVK   52 (167)
T ss_dssp             HHHHHHHTTCCTTSCEEEEC-SSTTHHHHHHHHHHTTCCCEEEECSCHH
T ss_pred             HHHHHHHcCCCCCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEecccHH
Confidence            44555555 66888888884 5666777888999999999988866543

>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.61  E-value=0.47  Score=30.29  Aligned_cols=44  Identities=20%  Similarity=0.218  Sum_probs=33.7

Q ss_pred             HHHHhh-ccCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccH
Q 031752           86 KKVRSL-CKEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGH  130 (153)
Q Consensus        86 ~~~~~~-~~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~  130 (153)
                      +.+.++ -+.+.+.++||++-..+..+++.|...|+. +..+.|++
T Consensus        18 ~~L~~ll~~~~~k~IIF~~s~~~~~~l~~~L~~~g~~-~~~~~~~~   62 (155)
T d1hv8a2          18 EALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFK-AGAIHGDL   62 (155)
T ss_dssp             HHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTCC-EEEECSSS
T ss_pred             HHHHHHHccCCCCEEEEECchHHHHHHHhhhcccccc-cccccccc
Confidence            344444 345667899999888889999999999987 77777774

>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Mapk phosphatase
species: Human (Homo sapiens), pac-1 [TaxId: 9606]

Probab=87.52  E-value=0.95  Score=28.44  Aligned_cols=78  Identities=18%  Similarity=0.149  Sum_probs=42.2

Q ss_pred             hCC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCC--hHHHHHHHhhccCCCeEEEEeCCCc-cHH-HHHHHH
Q 031752           41 ESG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN--PDFLKKVRSLCKEEDRLVVGCQSGA-RSL-HATADL  115 (153)
Q Consensus        41 ~~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ivi~c~~g~-~a~-~~~~~L  115 (153)
                      +.+ ..||++.........+.  -.+.++|..+... .++..  ++..+.+.+....+++|+|+|..|. ||. .++.+|
T Consensus        27 ~~gI~~Iin~~~~~~~~~~~~--~~y~~i~i~D~~~-~~i~~~~~~~~~~i~~~~~~~~~VlVHC~~G~sRS~~v~~aYL  103 (145)
T d1m3ga_          27 ACGITAVLNVSASCPNHFEGL--FRYKSIPVEDNQM-VEISAWFQEAIGFIDWVKNSGGRVLVHSQAGISRSATICLAYL  103 (145)
T ss_dssp             HHTCSEEEECSSSSSEEECSS--SEEEECCCCCSTT-CCCTTSHHHHHHHHHHHHHTTCCEEECCSSSSSHHHHHHHHHH
T ss_pred             HcCCcEEEEecCCCCcCCCCc--eEEEEEeccCCch-hhHHHHHHHHHHHHHHhhccCceEEEEcccccccHHHHHHHHH
Confidence            335 56899876433222222  2446677654322 22221  1333444333567899999999885 665 555556


Q ss_pred             HH-CCcc
Q 031752          116 LG-AGFK  121 (153)
Q Consensus       116 ~~-~G~~  121 (153)
                      .. .|++
T Consensus       104 m~~~~~~  110 (145)
T d1m3ga_         104 MQSRRVR  110 (145)
T ss_dssp             HHTTCCH
T ss_pred             HHHhCCC
Confidence            54 5654

>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.22  E-value=0.58  Score=30.22  Aligned_cols=38  Identities=18%  Similarity=0.160  Sum_probs=32.3

Q ss_pred             cCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031752           93 KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM  131 (153)
Q Consensus        93 ~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~  131 (153)
                      .+.++++++|++...+...+..|...|+. +..+.|++.
T Consensus        25 ~~~~k~iIF~~s~~~~~~l~~~L~~~~~~-~~~~~~~~~   62 (162)
T d1fuka_          25 ISVTQAVIFCNTRRKVEELTTKLRNDKFT-VSAIYSDLP   62 (162)
T ss_dssp             TTCSCEEEEESSHHHHHHHHHHHHHTTCC-EEEECTTSC
T ss_pred             CCCCcEEEEEEEEchHHHHHHHHhhcCce-EEEeccCCc
Confidence            36678999999988889999999999997 888888763

>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.01  E-value=0.54  Score=30.53  Aligned_cols=37  Identities=19%  Similarity=0.180  Sum_probs=31.4

Q ss_pred             CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031752           94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM  131 (153)
Q Consensus        94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~  131 (153)
                      ....++++|++-..+..+...|.+.|+. +..+.|++.
T Consensus        26 ~~~k~iIF~~~~~~~~~l~~~L~~~~~~-~~~ihg~~~   62 (168)
T d1t5ia_          26 EFNQVVIFVKSVQRCIALAQLLVEQNFP-AIAIHRGMP   62 (168)
T ss_dssp             CCSSEEEECSSHHHHHHHHHHHHHTTCC-EEEECTTSC
T ss_pred             CCCeEEEEEeeeecchhhhhhhcccccc-ccccccccc
Confidence            5567999999887888999999999986 888999864

>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=85.20  E-value=0.62  Score=31.27  Aligned_cols=38  Identities=18%  Similarity=0.313  Sum_probs=32.8

Q ss_pred             cCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031752           93 KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM  131 (153)
Q Consensus        93 ~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~  131 (153)
                      .+++.++|||++-..+..++..|...|+. +..+.|+..
T Consensus        28 ~~~~~~IIF~~t~~~~~~l~~~l~~~~~~-~~~~h~~~~   65 (200)
T d1oywa3          28 QRGKSGIIYCNSRAKVEDTAARLQSKGIS-AAAYHAGLE   65 (200)
T ss_dssp             TTTCCEEEECSSHHHHHHHHHHHHHTTCC-EEEECTTSC
T ss_pred             cCCCCEEEEEeeehhhHHhhhhhccCCce-eEEecCCCc
Confidence            46778999999988899999999999987 888888863

>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.88  E-value=0.56  Score=30.45  Aligned_cols=38  Identities=11%  Similarity=0.120  Sum_probs=31.9

Q ss_pred             cCCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHH
Q 031752           93 KEEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHM  131 (153)
Q Consensus        93 ~~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~  131 (153)
                      .+..+++++|++-..+..++..|...|+. +..+.|++.
T Consensus        30 ~~~~k~iVF~~~~~~~~~l~~~L~~~g~~-~~~~h~~~~   67 (171)
T d1s2ma2          30 LQINQAIIFCNSTNRVELLAKKITDLGYS-CYYSHARMK   67 (171)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHHTCC-EEEECTTSC
T ss_pred             CCCCceEEEEeeeehhhHhHHhhhccccc-ccccccccc
Confidence            46678999999888888999999999988 777888764

>d1mkpa_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pyst1 (mkp3) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Mapk phosphatase
species: Human (Homo sapiens), pyst1 (mkp3) [TaxId: 9606]

Probab=82.50  E-value=1.2  Score=27.72  Aligned_cols=78  Identities=17%  Similarity=0.113  Sum_probs=40.2

Q ss_pred             CC-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCC--hHHHHHHHhhccCCCeEEEEeCCCc-cHH-HHHHHHH
Q 031752           42 SG-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKN--PDFLKKVRSLCKEEDRLVVGCQSGA-RSL-HATADLL  116 (153)
Q Consensus        42 ~~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ivi~c~~g~-~a~-~~~~~L~  116 (153)
                      .+ ..||++..+.........+-.+.++|..+... .++..  +...+.+.+....+.+|+|+|..|. ||. .++.+|.
T Consensus        28 ~gI~~Iin~~~~~~~~~~~~~~~~y~~~~~~D~~~-~~i~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~vv~aYLm  106 (144)
T d1mkpa_          28 FGIKYILNVTPNLPNLFENAGEFKYKQIPISDHWS-QNLSQFFPEAISFIDEARGKNCGVLVHSLAGISRSVTVTVAYLM  106 (144)
T ss_dssp             TTEEEEEECCSSCCCEEEEETTEEEEECCCCCSTT-CCSGGGHHHHHHHHHHHHHTTCEEEEECSSCSHHHHHHHHHHHH
T ss_pred             CCCcEEEEccccCCccccCCCceEEEEEEEecCCC-CCHHHHHHHHHHHHHHhhhccceEEEEecccccchHHHHHHHHH
Confidence            45 46889875432111222333456666654322 12221  1222333333568899999999875 655 4445555


Q ss_pred             H-CCc
Q 031752          117 G-AGF  120 (153)
Q Consensus       117 ~-~G~  120 (153)
                      . .|.
T Consensus       107 ~~~~~  111 (144)
T d1mkpa_         107 QKLNL  111 (144)
T ss_dssp             HHHTC
T ss_pred             HHhCC
Confidence            4 564

>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.75  E-value=0.97  Score=29.29  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=32.4

Q ss_pred             CCCeEEEEeCCCccHHHHHHHHHHCCccceeeccccHHH
Q 031752           94 EEDRLVVGCQSGARSLHATADLLGAGFKHVSNFGGGHMA  132 (153)
Q Consensus        94 ~~~~ivi~c~~g~~a~~~~~~L~~~G~~~v~~l~gG~~~  132 (153)
                      +..+++++|++...+..++..|...|+. +..+.|+...
T Consensus        33 ~~~k~iiF~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~   70 (168)
T d2j0sa2          33 TITQAVIFCNTKRKVDWLTEKMREANFT-VSSMHGDMPQ   70 (168)
T ss_dssp             TSSEEEEECSSHHHHHHHHHHHHHTTCC-CEEECTTSCH
T ss_pred             CCCceEEEeeeHHHHHHHHHHhhhcccc-hhhhhhhhhH
Confidence            5678999999988889999999999987 7788887643

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=80.65  E-value=4.6  Score=27.93  Aligned_cols=90  Identities=19%  Similarity=0.212  Sum_probs=51.1

Q ss_pred             ecHHHHHHHHh---C-C-CeEEecCChhhhhcCCCCCcceeCccccccCCCCCCCChHHHHHHHhhccCCCeEEEEeCCC
Q 031752           31 VDVRAAKNLLE---S-G-YGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVVGCQSG  105 (153)
Q Consensus        31 i~~~~~~~~~~---~-~-~~iIDvR~~~e~~~ghi~ga~~i~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivi~c~~g  105 (153)
                      ++.+++.++++   + + -.+|.|.++.|.....-.|+..+-|-.  -+-.+.-.+.+-...+...++++  +++++.+|
T Consensus       136 L~~~~l~~l~~~a~~lgl~~LvEvh~~~El~~a~~~~a~iIGINn--RnL~t~~vd~~~~~~L~~~ip~~--~~~IaESG  211 (247)
T d1a53a_         136 LTERELESLLEYARSYGMEPLIEINDENDLDIALRIGARFIGINS--RDLETLEINKENQRKLISMIPSN--VVKVAESG  211 (247)
T ss_dssp             SCHHHHHHHHHHHHTTTCCCEEEECSHHHHHHHHHTTCSEEEEES--BCTTTCCBCHHHHHHHHHHSCTT--SEEEEESC
T ss_pred             ccHHHHHHHHHHHHHHhhhHHhhcCCHHHHHHHHhCCCCeEeeec--cChhhhhhhhhHHHHHHhhCCCC--CeEEEecC
Confidence            45566666654   2 3 478999999998764333442222211  11111111122233333444544  36677899


Q ss_pred             ccHHHHHHHHHHCCcccee
Q 031752          106 ARSLHATADLLGAGFKHVS  124 (153)
Q Consensus       106 ~~a~~~~~~L~~~G~~~v~  124 (153)
                      ..+..-++.+.+.|++.+.
T Consensus       212 I~t~~dv~~l~~~G~davL  230 (247)
T d1a53a_         212 ISERNEIEELRKLGVNAFL  230 (247)
T ss_dssp             CCCHHHHHHHHHTTCCEEE
T ss_pred             CCCHHHHHHHHHCCCCEEE
Confidence            8888888899999999543