Query 031753
Match_columns 153
No_of_seqs 112 out of 219
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 07:21:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031753.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031753hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_T Photosystem II reaction 66.7 7.3 0.00025 22.6 3.4 22 4-25 2-23 (32)
2 4b4a_A TATC, SEC-independent p 21.3 81 0.0028 25.3 3.6 28 67-95 67-94 (249)
3 3eyy_A Putative iron uptake re 19.7 47 0.0016 23.9 1.8 34 78-111 33-67 (145)
4 3tx3_A Uncharacterized protein 19.2 3.4E+02 0.012 21.4 13.9 54 67-120 92-150 (249)
5 1mzb_A Ferric uptake regulatio 17.5 49 0.0017 23.3 1.4 36 77-112 33-69 (136)
6 3mwm_A ZUR, putative metal upt 16.2 18 0.00063 26.0 -1.2 34 78-111 29-63 (139)
7 3cjs_B 50S ribosomal protein L 15.4 38 0.0013 22.6 0.3 13 36-48 31-43 (72)
8 1dev_B SMAD anchor for recepto 14.9 43 0.0015 20.2 0.4 13 36-48 6-18 (41)
9 1k8b_A EIF-2-beta, probable tr 13.6 94 0.0032 19.3 1.8 26 34-61 9-34 (52)
10 2fe3_A Peroxide operon regulat 13.4 68 0.0023 22.9 1.2 35 77-111 36-71 (145)
No 1
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=66.69 E-value=7.3 Score=22.59 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031753 4 IFLFWFLMSAINIALIASTFYQ 25 (153)
Q Consensus 4 ~~~~~i~a~ll~~~ll~l~vy~ 25 (153)
|++.|.+.++.+.+.+|.++++
T Consensus 2 Ea~vYt~ll~~tlgiiFFAI~F 23 (32)
T 3arc_T 2 ETITYVFIFACIIALFFFAIFF 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHhhhh
Confidence 7899999999888888877764
No 2
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=21.26 E-value=81 Score=25.28 Aligned_cols=28 Identities=14% Similarity=0.373 Sum_probs=21.4
Q ss_pred hhHHHHHHhhHHHHHHHHHHHhhccCccc
Q 031753 67 TGHWIMFLLGVPLVCYHVNLYMKRKHLID 95 (153)
Q Consensus 67 ~g~W~~~llnlPll~y~~~~y~~r~~l~D 95 (153)
..-+....+..|...|.+|++.++ |++.
T Consensus 67 vs~~~g~~~a~P~ilyQiw~Fi~P-gLy~ 94 (249)
T 4b4a_A 67 ISLAVGFIIASPVILYQFWRFIEP-ALYS 94 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-TTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cccH
Confidence 345577899999999999997764 4443
No 3
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=19.71 E-value=47 Score=23.87 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhccC-ccchhhhhhhhHHHHHHHH
Q 031753 78 PLVCYHVNLYMKRKH-LIDVTEVFRNLKVEKKFRL 111 (153)
Q Consensus 78 Pll~y~~~~y~~r~~-l~D~TeIf~~L~~~kk~~~ 111 (153)
|+.++.++.-.++++ -+++++|+|+|+.-...+.
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 677888888887665 5899999999998777664
No 4
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=19.22 E-value=3.4e+02 Score=21.45 Aligned_cols=54 Identities=22% Similarity=0.268 Sum_probs=35.6
Q ss_pred hhHHHHHHhhHHHHHHHHHH---HhhccCccch--hhhhhhhHHHHHHHHHHHHHHHHH
Q 031753 67 TGHWIMFLLGVPLVCYHVNL---YMKRKHLIDV--TEVFRNLKVEKKFRLAKLGFYVIF 120 (153)
Q Consensus 67 ~g~W~~~llnlPll~y~~~~---y~~r~~l~D~--TeIf~~L~~~kk~~~iKLafyll~ 120 (153)
...-++.++..|..-...-+ ..+++..-|. ++..+.+.+-.|+++.|+++++..
T Consensus 92 lf~~va~~IaapF~~~LAE~VE~~l~g~~~~~~~~~~~~~~l~r~l~~~l~~l~~~l~~ 150 (249)
T 3tx3_A 92 IFSTIMHLIAAPFNGLLAEKVERYESGESLGDEGFLGLFKDIPRTLKREMQKLMYYIPR 150 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCSSGGGSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446666777776666655 3333333333 556788889999999999999653
No 5
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=17.52 E-value=49 Score=23.35 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhccC-ccchhhhhhhhHHHHHHHHH
Q 031753 77 VPLVCYHVNLYMKRKH-LIDVTEVFRNLKVEKKFRLA 112 (153)
Q Consensus 77 lPll~y~~~~y~~r~~-l~D~TeIf~~L~~~kk~~~i 112 (153)
-|+.+..++...++++ -+++++|+|+|+.-...+.+
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3677788888777654 48999999999887776643
No 6
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=16.20 E-value=18 Score=25.96 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhccC-ccchhhhhhhhHHHHHHHH
Q 031753 78 PLVCYHVNLYMKRKH-LIDVTEVFRNLKVEKKFRL 111 (153)
Q Consensus 78 Pll~y~~~~y~~r~~-l~D~TeIf~~L~~~kk~~~ 111 (153)
|+.+..++...++++ -++.++|+|+|+.-...+.
T Consensus 29 h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 29 FRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 556666776666544 4788888888877666543
No 7
>3cjs_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 3cju_B* 2bcw_A
Probab=15.42 E-value=38 Score=22.57 Aligned_cols=13 Identities=23% Similarity=0.115 Sum_probs=11.2
Q ss_pred cCChHHhhhhcCC
Q 031753 36 DINPFEASSRINF 48 (153)
Q Consensus 36 ~iNPiD~c~rlN~ 48 (153)
=+||.|+|+.+|.
T Consensus 31 Gvni~~f~k~fN~ 43 (72)
T 3cjs_B 31 GANIMEFVKAFNA 43 (72)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3799999999995
No 8
>1dev_B SMAD anchor for receptor activation; beta sheet, three-helix bundle, signaling protein; 2.20A {Homo sapiens} SCOP: j.64.1.1 PDB: 1mk2_B
Probab=14.91 E-value=43 Score=20.18 Aligned_cols=13 Identities=38% Similarity=0.217 Sum_probs=10.6
Q ss_pred cCChHHhhhhcCC
Q 031753 36 DINPFEASSRINF 48 (153)
Q Consensus 36 ~iNPiD~c~rlN~ 48 (153)
=.||+|.|+.+-+
T Consensus 6 PNnPmEYCStiPP 18 (41)
T 1dev_B 6 PNNPAEYCSTIPP 18 (41)
T ss_dssp TTCGGGTCBCSCH
T ss_pred CCCcchhhccCCc
Confidence 3799999998765
No 9
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=13.55 E-value=94 Score=19.27 Aligned_cols=26 Identities=23% Similarity=0.121 Sum_probs=20.2
Q ss_pred cccCChHHhhhhcCCchhHHHHHHHHHH
Q 031753 34 SDDINPFEASSRINFWVEPEFLLQGLFC 61 (153)
Q Consensus 34 ~D~iNPiD~c~rlN~lVlPE~~~h~~l~ 61 (153)
+-+.|=.|.|+++|| -||++.+-+.+
T Consensus 9 Tvi~Nf~~Ia~~L~R--~p~hv~ky~~~ 34 (52)
T 1k8b_A 9 TIIRNFRELAKAVNR--DEEFFAKYLLK 34 (52)
T ss_dssp EEECCHHHHHHHHHT--CHHHHHHHHHH
T ss_pred EEEECHHHHHHHHCC--CHHHHHHHHHH
Confidence 446788999999999 58887776553
No 10
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=13.37 E-value=68 Score=22.91 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhccC-ccchhhhhhhhHHHHHHHH
Q 031753 77 VPLVCYHVNLYMKRKH-LIDVTEVFRNLKVEKKFRL 111 (153)
Q Consensus 77 lPll~y~~~~y~~r~~-l~D~TeIf~~L~~~kk~~~ 111 (153)
-|+.+..++...++++ -+++++|+|.|+.-...+.
T Consensus 36 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 36 AHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp SCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3677888888887664 4899999999988776654
Done!