Query 031753
Match_columns 153
No_of_seqs 112 out of 219
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 07:21:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031753.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031753hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtt1 f.23.34.1 (T:1-30) Pho 29.7 35 0.0025 17.7 3.4 22 4-25 2-23 (30)
2 d1mzba_ a.4.5.42 (A:) Ferric u 22.4 16 0.0011 24.2 1.4 34 78-111 32-66 (134)
3 d1otsa_ f.20.1.1 (A:) Clc chlo 9.5 1.3E+02 0.0098 23.2 4.1 35 74-109 409-443 (444)
4 d1mmsa2 d.47.1.1 (A:8-70) Ribo 9.4 36 0.0026 20.7 0.3 13 36-48 25-37 (63)
5 d2fuea1 c.108.1.10 (A:13-256) 8.6 27 0.0019 23.1 -0.7 17 36-52 228-244 (244)
6 d1of9a_ a.64.1.4 (A:) Ameobapo 8.6 58 0.0043 19.1 1.1 25 22-47 51-75 (77)
7 d2gycg2 d.47.1.1 (G:2-72) Ribo 7.7 36 0.0027 21.1 -0.2 14 35-48 29-42 (71)
8 d2gtga1 a.64.1.1 (A:2-79) Sapo 7.4 1.3E+02 0.0096 17.1 2.5 19 28-47 57-75 (78)
9 d1nkla_ a.64.1.1 (A:) NK-lysin 7.4 1.3E+02 0.0097 17.2 2.5 25 22-47 50-74 (78)
10 d1wiba_ d.47.1.1 (A:) 60S ribo 6.6 57 0.0041 21.1 0.3 13 36-48 42-54 (92)
No 1
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=29.75 E-value=35 Score=17.74 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 031753 4 IFLFWFLMSAINIALIASTFYQ 25 (153)
Q Consensus 4 ~~~~~i~a~ll~~~ll~l~vy~ 25 (153)
|...|++.|....++.|..+|+
T Consensus 2 e~i~yv~ifac~i~lfffaiff 23 (30)
T d2axtt1 2 ETITYVFIFACIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceeehHHHHHHHHHHHHHHHHh
Confidence 5666777666666777766654
No 2
>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.41 E-value=16 Score=24.21 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhccC-ccchhhhhhhhHHHHHHHH
Q 031753 78 PLVCYHVNLYMKRKH-LIDVTEVFRNLKVEKKFRL 111 (153)
Q Consensus 78 Pll~y~~~~y~~r~~-l~D~TeIf~~L~~~kk~~~ 111 (153)
|+.+..++...+.++ -++.++|||+|+.-...+.
T Consensus 32 h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~gl 66 (134)
T d1mzba_ 32 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 66 (134)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhccE
Confidence 677778888777664 5899999998887776654
No 3
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=9.46 E-value=1.3e+02 Score=23.21 Aligned_cols=35 Identities=14% Similarity=0.080 Sum_probs=26.3
Q ss_pred HhhHHHHHHHHHHHhhccCccchhhhhhhhHHHHHH
Q 031753 74 LLGVPLVCYHVNLYMKRKHLIDVTEVFRNLKVEKKF 109 (153)
Q Consensus 74 llnlPll~y~~~~y~~r~~l~D~TeIf~~L~~~kk~ 109 (153)
++-.-+.+|-+.+..+++.+|| +-+-++++++++|
T Consensus 409 ~~ia~~~a~~v~~~~~~~siY~-~~l~~~~~~~~~~ 443 (444)
T d1otsa_ 409 MIITGLGATLLAQFTGGKPLYS-AILARTLAKQEAE 443 (444)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHH-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCCChHH-HHHHHHHHhhhcc
Confidence 4444567888888888888998 6677788877765
No 4
>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=9.37 E-value=36 Score=20.71 Aligned_cols=13 Identities=31% Similarity=0.378 Sum_probs=10.9
Q ss_pred cCChHHhhhhcCC
Q 031753 36 DINPFEASSRINF 48 (153)
Q Consensus 36 ~iNPiD~c~rlN~ 48 (153)
=+|..|+|+..|.
T Consensus 25 GiNi~~F~k~fN~ 37 (63)
T d1mmsa2 25 GVNIMEFCKRFNA 37 (63)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHH
Confidence 4799999999984
No 5
>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.60 E-value=27 Score=23.13 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=14.5
Q ss_pred cCChHHhhhhcCCchhH
Q 031753 36 DINPFEASSRINFWVEP 52 (153)
Q Consensus 36 ~iNPiD~c~rlN~lVlP 52 (153)
-.||.|..++++.+++|
T Consensus 228 v~na~~~~k~~~~~~~~ 244 (244)
T d2fuea1 228 VVSPQDTVQRCREIFFP 244 (244)
T ss_dssp CSSHHHHHHHHHHHHCT
T ss_pred cCCHHHHHHHHHHhcCC
Confidence 45999999999988887
No 6
>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId: 5759]}
Probab=8.56 E-value=58 Score=19.15 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=16.8
Q ss_pred HHHHHHhhhccccccCChHHhhhhcC
Q 031753 22 TFYQLLCLLDLESDDINPFEASSRIN 47 (153)
Q Consensus 22 ~vy~lI~l~DLe~D~iNPiD~c~rlN 47 (153)
.-|.=..++.++.+ .||-+.|+.++
T Consensus 51 ~~y~~~ii~~l~~~-~~p~~iC~~l~ 75 (77)
T d1of9a_ 51 DFGIDKLIQLIEDK-VDANAICAKIH 75 (77)
T ss_dssp HHCHHHHHHHHHHT-CCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHhcC
Confidence 34444555666664 59999998875
No 7
>d2gycg2 d.47.1.1 (G:2-72) Ribosomal protein L11, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.68 E-value=36 Score=21.14 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=11.4
Q ss_pred ccCChHHhhhhcCC
Q 031753 35 DDINPFEASSRINF 48 (153)
Q Consensus 35 D~iNPiD~c~rlN~ 48 (153)
-=+|.+|+|++.|.
T Consensus 29 ~GiNi~~F~k~fN~ 42 (71)
T d2gycg2 29 QGVNIMEFCKAFNA 42 (71)
T ss_dssp SSCCSSSSSTTTTT
T ss_pred cCcCHHHHHHHHHH
Confidence 34789999999994
No 8
>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.44 E-value=1.3e+02 Score=17.06 Aligned_cols=19 Identities=21% Similarity=0.190 Sum_probs=13.4
Q ss_pred hhhccccccCChHHhhhhcC
Q 031753 28 CLLDLESDDINPFEASSRIN 47 (153)
Q Consensus 28 ~l~DLe~D~iNPiD~c~rlN 47 (153)
.++-++. ..||-+.|+.++
T Consensus 57 ii~~l~~-~~~p~~iC~~l~ 75 (78)
T d2gtga1 57 ILSILLE-EVSPELVCSMLH 75 (78)
T ss_dssp HHHHHHT-TCCHHHHHHHTT
T ss_pred HHHHHHh-CCCHHHHHHHcC
Confidence 3344544 669999999876
No 9
>d1nkla_ a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]}
Probab=7.39 E-value=1.3e+02 Score=17.20 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=16.9
Q ss_pred HHHHHHhhhccccccCChHHhhhhcC
Q 031753 22 TFYQLLCLLDLESDDINPFEASSRIN 47 (153)
Q Consensus 22 ~vy~lI~l~DLe~D~iNPiD~c~rlN 47 (153)
.-|.=..++.++. ..||-+.|+.++
T Consensus 50 ~~y~~~ii~~l~~-~~~p~~iC~~l~ 74 (78)
T d1nkla_ 50 RSFLRRISWDILT-GKKPQAICVDIK 74 (78)
T ss_dssp HHHHHHHHHHHHT-TCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHh-CCCHHHHHhhhC
Confidence 3444445556655 569999999875
No 10
>d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.62 E-value=57 Score=21.12 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=11.1
Q ss_pred cCChHHhhhhcCC
Q 031753 36 DINPFEASSRINF 48 (153)
Q Consensus 36 ~iNPiD~c~rlN~ 48 (153)
=+|+.++|+++|.
T Consensus 42 Gini~~f~k~fN~ 54 (92)
T d1wiba_ 42 GLSPKKVGDDIAK 54 (92)
T ss_dssp CSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3799999999996
Done!