Query 031754
Match_columns 153
No_of_seqs 127 out of 1075
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 04:53:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031754.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031754hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 1.6E-53 3.5E-58 299.1 14.5 141 5-147 3-146 (148)
2 COG5078 Ubiquitin-protein liga 100.0 7.5E-53 1.6E-57 301.6 17.0 142 4-147 6-151 (153)
3 KOG0419 Ubiquitin-protein liga 100.0 1.5E-50 3.3E-55 277.1 14.2 144 1-146 1-148 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 3.5E-49 7.6E-54 285.0 18.1 145 1-148 1-148 (152)
5 PLN00172 ubiquitin conjugating 100.0 2.9E-48 6.2E-53 279.0 17.5 140 5-146 3-145 (147)
6 KOG0418 Ubiquitin-protein liga 100.0 2.6E-45 5.6E-50 265.2 14.1 148 1-149 1-154 (200)
7 KOG0425 Ubiquitin-protein liga 100.0 1.7E-44 3.7E-49 254.0 15.8 140 5-146 10-163 (171)
8 KOG0424 Ubiquitin-protein liga 100.0 4.8E-44 1E-48 248.5 14.9 145 1-147 1-156 (158)
9 PF00179 UQ_con: Ubiquitin-con 100.0 2.5E-43 5.3E-48 251.6 14.0 135 7-143 1-140 (140)
10 KOG0416 Ubiquitin-protein liga 100.0 2.1E-43 4.4E-48 251.6 11.2 148 1-148 1-148 (189)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 1.5E-42 3.2E-47 247.9 15.3 136 6-143 2-141 (141)
12 KOG0426 Ubiquitin-protein liga 100.0 1.5E-42 3.3E-47 237.9 14.0 145 1-147 1-163 (165)
13 KOG0421 Ubiquitin-protein liga 100.0 2.4E-42 5.2E-47 240.0 11.3 139 4-145 30-171 (175)
14 smart00212 UBCc Ubiquitin-conj 100.0 3.9E-41 8.5E-46 241.6 16.8 139 6-146 1-144 (145)
15 KOG0422 Ubiquitin-protein liga 100.0 6.8E-38 1.5E-42 216.7 13.4 141 4-147 3-148 (153)
16 KOG0420 Ubiquitin-protein liga 100.0 1.3E-37 2.9E-42 222.2 11.7 141 4-147 29-174 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 2.7E-35 5.8E-40 210.7 8.0 139 4-144 11-152 (223)
18 KOG0427 Ubiquitin conjugating 100.0 7E-30 1.5E-34 175.3 10.6 117 4-123 16-137 (161)
19 KOG0894 Ubiquitin-protein liga 99.9 7.2E-27 1.6E-31 172.6 14.7 130 1-136 1-143 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 1.4E-23 3.1E-28 155.7 13.2 136 8-145 24-167 (258)
21 KOG0428 Non-canonical ubiquiti 99.9 1.2E-21 2.6E-26 147.7 9.7 109 4-115 12-125 (314)
22 KOG0895 Ubiquitin-conjugating 99.7 4.5E-17 9.8E-22 142.8 6.1 96 16-113 867-971 (1101)
23 KOG0896 Ubiquitin-conjugating 99.6 7.6E-15 1.6E-19 101.6 7.2 107 4-111 6-121 (138)
24 KOG0895 Ubiquitin-conjugating 99.6 1.8E-14 3.9E-19 126.7 10.2 109 4-114 283-405 (1101)
25 KOG0897 Predicted ubiquitin-co 98.6 2.6E-08 5.7E-13 67.4 3.6 92 49-142 13-109 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.6 2.1E-07 4.6E-12 65.8 7.1 66 45-112 34-105 (133)
27 PF08694 UFC1: Ubiquitin-fold 98.5 6.4E-08 1.4E-12 68.0 2.0 103 5-111 26-143 (161)
28 PF05743 UEV: UEV domain; Int 98.1 1.5E-05 3.2E-10 55.5 7.0 77 29-112 32-116 (121)
29 KOG3357 Uncharacterized conser 97.5 0.00012 2.5E-09 51.1 3.7 103 5-111 29-146 (167)
30 PF14462 Prok-E2_E: Prokaryoti 97.0 0.012 2.7E-07 40.8 9.2 92 15-111 9-119 (122)
31 KOG2391 Vacuolar sorting prote 96.9 0.011 2.4E-07 47.5 9.7 76 36-114 55-138 (365)
32 PF05773 RWD: RWD domain; Int 95.8 0.025 5.4E-07 37.8 5.1 46 26-71 26-73 (113)
33 PF14457 Prok-E2_A: Prokaryoti 95.1 0.03 6.5E-07 40.9 3.8 62 50-113 56-126 (162)
34 smart00591 RWD domain in RING 94.6 0.31 6.8E-06 32.1 7.5 27 45-71 39-65 (107)
35 KOG0309 Conserved WD40 repeat- 85.9 4.1 9E-05 36.7 7.5 65 6-71 423-491 (1081)
36 KOG4018 Uncharacterized conser 83.6 4.1 8.8E-05 31.0 5.7 41 28-69 29-71 (215)
37 PF09765 WD-3: WD-repeat regio 73.2 7.6 0.00017 31.0 4.7 83 6-111 102-186 (291)
38 PF03366 YEATS: YEATS family; 56.2 42 0.0009 21.6 4.9 44 30-75 2-45 (84)
39 PF06113 BRE: Brain and reprod 48.6 30 0.00065 28.2 4.0 34 43-76 61-95 (333)
40 PF00845 Gemini_BL1: Geminivir 45.0 49 0.0011 25.9 4.5 44 29-73 102-154 (276)
41 PF14460 Prok-E2_D: Prokaryoti 44.8 36 0.00077 24.9 3.7 41 70-114 90-133 (175)
42 cd00421 intradiol_dioxygenase 44.6 34 0.00075 24.2 3.5 24 46-69 65-89 (146)
43 PF06113 BRE: Brain and reprod 44.4 32 0.0007 28.1 3.6 25 46-70 305-329 (333)
44 KOG0662 Cyclin-dependent kinas 44.4 23 0.0005 26.9 2.6 55 61-116 167-224 (292)
45 TIGR03737 PRTRC_B PRTRC system 44.1 40 0.00087 26.0 4.0 37 70-112 131-171 (228)
46 cd03457 intradiol_dioxygenase_ 37.7 49 0.0011 24.7 3.5 24 46-69 86-109 (188)
47 PF13950 Epimerase_Csub: UDP-g 35.7 45 0.00097 20.0 2.5 18 91-108 36-53 (62)
48 PF14135 DUF4302: Domain of un 34.1 79 0.0017 24.2 4.3 69 3-79 9-101 (235)
49 cd03459 3,4-PCD Protocatechuat 32.1 70 0.0015 23.1 3.5 24 46-69 72-100 (158)
50 KOG0177 20S proteasome, regula 31.5 14 0.00031 27.6 -0.2 31 81-112 135-165 (200)
51 KOG1047 Bifunctional leukotrie 30.9 54 0.0012 28.8 3.0 29 42-71 248-279 (613)
52 PF12018 DUF3508: Domain of un 30.5 60 0.0013 25.7 3.1 29 119-147 238-266 (281)
53 PF09606 Med15: ARC105 or Med1 27.7 20 0.00044 32.7 0.0 28 44-71 711-738 (799)
54 PF11333 DUF3135: Protein of u 26.6 1.7E+02 0.0038 18.8 4.2 29 121-149 6-34 (83)
55 smart00340 HALZ homeobox assoc 26.1 47 0.001 18.7 1.3 12 4-15 20-31 (44)
56 KOG3203 Mitochondrial/chloropl 25.6 36 0.00079 24.7 1.0 14 71-86 50-63 (165)
57 KOG2851 Eukaryotic-type DNA pr 25.3 1.6E+02 0.0035 24.5 4.7 33 77-110 332-369 (412)
58 KOG4445 Uncharacterized conser 24.3 90 0.0019 25.3 3.0 25 47-71 45-69 (368)
59 PF09280 XPC-binding: XPC-bind 23.7 1.3E+02 0.0028 18.0 3.1 21 120-140 34-54 (59)
60 PF04881 Adeno_GP19K: Adenovir 23.6 81 0.0018 22.2 2.4 30 26-55 44-74 (139)
61 PF14909 SPATA6: Spermatogenes 23.3 1.5E+02 0.0032 21.2 3.7 52 18-71 85-137 (140)
62 PF11745 DUF3304: Protein of u 22.6 43 0.00093 22.8 0.9 21 81-101 50-70 (118)
63 TIGR02423 protocat_alph protoc 21.7 1.3E+02 0.0028 22.5 3.4 24 46-69 96-124 (193)
64 PF01175 Urocanase: Urocanase; 20.8 1.7E+02 0.0037 25.5 4.2 27 121-147 271-297 (546)
65 PF12652 CotJB: CotJB protein; 20.5 2.4E+02 0.0051 17.9 3.9 33 117-150 24-56 (78)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-53 Score=299.07 Aligned_cols=141 Identities=36% Similarity=0.695 Sum_probs=136.2
Q ss_pred HHHHHHHHHhC---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCceEEecCccccceeCCC
Q 031754 5 SKRREMDLMKL---MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMS 81 (153)
Q Consensus 5 ~~Rl~~el~~l---~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~ 81 (153)
.+||.||++++ +++|+++.+.++|+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||+ +.
T Consensus 3 ~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~-~~ 81 (148)
T KOG0417|consen 3 SKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNID-SN 81 (148)
T ss_pred HHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcC-cc
Confidence 47999999865 779999999999999999999999999999999999999999999999999999999999999 69
Q ss_pred CceEcccccCCCCCCCCHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhh
Q 031754 82 GSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKGIEHFLY 147 (153)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~~ 147 (153)
|.||+|+|++.|+|++++.+||++ |++||.+||+++|++.++|.+|+.|+.+|++.||+||++++
T Consensus 82 G~IclDILk~~WsPAl~i~~Vlls-I~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA 146 (148)
T KOG0417|consen 82 GRICLDILKDQWSPALTISKVLLS-ICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYA 146 (148)
T ss_pred ccchHHhhhccCChhhHHHHHHHH-HHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999 99999999999999999999999999999999999999664
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-53 Score=301.58 Aligned_cols=142 Identities=37% Similarity=0.761 Sum_probs=137.1
Q ss_pred HHHHHHHHHHhC---CCCCcEEEecCC-CceEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCceEEecCccccceeC
Q 031754 4 PSKRREMDLMKL---MMSDYKVEMIND-GIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDE 79 (153)
Q Consensus 4 ~~~Rl~~el~~l---~~~~~~v~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~ 79 (153)
+.+||++|++++ +++++++.+.++ |+++|+++|.||.+||||||+|++.|.||++||++||+|+|.++|||||||
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~- 84 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVD- 84 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcC-
Confidence 899999999976 568999999998 999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEcccccCCCCCCCCHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhh
Q 031754 80 MSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKGIEHFLY 147 (153)
Q Consensus 80 ~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~~ 147 (153)
.+|.||+|+|.+.|+|++++.+||.+ |++||.+||.++|+|.|||++|++|+++|.++||+++++++
T Consensus 85 ~~G~vCLdIL~~~WsP~~~l~sILls-l~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~ 151 (153)
T COG5078 85 PSGNVCLDILKDRWSPVYTLETILLS-LQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYA 151 (153)
T ss_pred CCCCChhHHHhCCCCccccHHHHHHH-HHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhc
Confidence 69999999999999999999999999 99999999999999999999999999999999999999653
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-50 Score=277.15 Aligned_cols=144 Identities=33% Similarity=0.716 Sum_probs=139.0
Q ss_pred CCC-HHHHHHHHHHhC---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCceEEecCccccc
Q 031754 1 MSS-PSKRREMDLMKL---MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPN 76 (153)
Q Consensus 1 M~~-~~~Rl~~el~~l---~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpn 76 (153)
|++ |.+||++|++++ ++.||+..|.++|+..|.+.|.||.+|||+||+|++.|.|+++||.+||.|+|.+..||||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 777 788999999976 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCceEcccccCCCCCCCCHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 031754 77 IDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKGIEHFL 146 (153)
Q Consensus 77 v~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~ 146 (153)
||. +|.+|+|+|...|+|.|++.+||.+ ||+||.+|++++|+|.|||++|++|+.+|.+++++.+.+-
T Consensus 81 vya-~G~iClDiLqNrWsp~Ydva~ILts-iQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqs 148 (152)
T KOG0419|consen 81 VYA-DGSICLDILQNRWSPTYDVASILTS-IQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQS 148 (152)
T ss_pred cCC-CCcchHHHHhcCCCCchhHHHHHHH-HHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 995 9999999999999999999999999 9999999999999999999999999999999999999853
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=3.5e-49 Score=285.02 Aligned_cols=145 Identities=34% Similarity=0.652 Sum_probs=138.4
Q ss_pred CCCHHHHHHHHHHhC---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCceEEecCccccce
Q 031754 1 MSSPSKRREMDLMKL---MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNI 77 (153)
Q Consensus 1 M~~~~~Rl~~el~~l---~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv 77 (153)
|+ +.+||++|++++ +++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 1 ~~-~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV 79 (152)
T PTZ00390 1 MS-ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNI 79 (152)
T ss_pred Cc-HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceE
Confidence 55 579999999976 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCceEcccccCCCCCCCCHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhhh
Q 031754 78 DEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKGIEHFLYH 148 (153)
Q Consensus 78 ~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~~~ 148 (153)
++ +|.||+++|.+.|+|++|+.+||++ |++||.+|++++|+|.+||++|++|+++|.++||+|+++++.
T Consensus 80 ~~-~G~iCl~iL~~~W~p~~ti~~iL~~-i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~ 148 (152)
T PTZ00390 80 DK-LGRICLDILKDKWSPALQIRTVLLS-IQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAK 148 (152)
T ss_pred CC-CCeEECccCcccCCCCCcHHHHHHH-HHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 95 9999999999999999999999999 999999999999999999999999999999999999996644
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=2.9e-48 Score=279.03 Aligned_cols=140 Identities=34% Similarity=0.684 Sum_probs=134.8
Q ss_pred HHHHHHHHHhC---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCceEEecCccccceeCCC
Q 031754 5 SKRREMDLMKL---MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMS 81 (153)
Q Consensus 5 ~~Rl~~el~~l---~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~ 81 (153)
.+||++|++++ +++|+.+.+.++|+.+|+++|.||++|||+||.|++.|.||++||++||+|+|.|+++||||+. +
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~-~ 81 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS-N 81 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC-C
Confidence 48999999976 6789999999999999999999999999999999999999999999999999999999999995 9
Q ss_pred CceEcccccCCCCCCCCHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 031754 82 GSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKGIEHFL 146 (153)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~ 146 (153)
|.||+++|.++|+|++++.+||.+ |++||.+|++++|+|.+||++|.+|+++|.++||+|++++
T Consensus 82 G~iCl~il~~~W~p~~ti~~il~~-i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~ 145 (147)
T PLN00172 82 GSICLDILRDQWSPALTVSKVLLS-ISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRY 145 (147)
T ss_pred CEEEcccCcCCCCCcCcHHHHHHH-HHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999 9999999999999999999999999999999999999854
No 6
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-45 Score=265.21 Aligned_cols=148 Identities=29% Similarity=0.641 Sum_probs=142.0
Q ss_pred CCCHHHHHHHHHHhC------CCCCcEEEecCCCceEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCceEEecCccc
Q 031754 1 MSSPSKRREMDLMKL------MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYH 74 (153)
Q Consensus 1 M~~~~~Rl~~el~~l------~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H 74 (153)
|+.+.+||++|+++. ...|+.++..++|+.+..++|.||+|||||||+|.+.|.+|++|||+||+|+|.|+|||
T Consensus 1 m~~~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwH 80 (200)
T KOG0418|consen 1 MSNAFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWH 80 (200)
T ss_pred CccHHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeec
Confidence 777889999999965 35789999999999999999999999999999999999999999999999999999999
Q ss_pred cceeCCCCceEcccccCCCCCCCCHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhhhc
Q 031754 75 PNIDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKGIEHFLYHS 149 (153)
Q Consensus 75 pnv~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~~~~ 149 (153)
|||.+.+|.||+|+|++.|++++|+..+|++ ||++|..|++.+|.+...|++|.+|++.|.+.||.|+..+++.
T Consensus 81 PnVSs~tGaICLDilkd~Wa~slTlrtvLis-lQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 81 PNVSSQTGAICLDILKDQWAASLTLRTVLIS-LQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred CCCCcccccchhhhhhcccchhhhHHHHHHH-HHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999999987765
No 7
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-44 Score=254.02 Aligned_cols=140 Identities=25% Similarity=0.565 Sum_probs=129.4
Q ss_pred HHHHHHHHHhCCCCCcEEEecCC-CceEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCceEEecCccccceeCCCCc
Q 031754 5 SKRREMDLMKLMMSDYKVEMIND-GIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGS 83 (153)
Q Consensus 5 ~~Rl~~el~~l~~~~~~v~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~ 83 (153)
.+|-.++|.+.+..|+.+...++ |+++|.+.|+||++|+|+||.|+..+.||.+||.+||+++|.|.+||||||+ +|.
T Consensus 10 l~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~-~G~ 88 (171)
T KOG0425|consen 10 LLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE-DGD 88 (171)
T ss_pred HHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC-CCC
Confidence 33444455555889999988876 8999999999999999999999999999999999999999999999999995 999
Q ss_pred eEccccc-------------CCCCCCCCHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 031754 84 VCLDVIN-------------QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKGIEHFL 146 (153)
Q Consensus 84 icl~~l~-------------~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~ 146 (153)
+|++||- +.|.|..|+++||++ |.+||.+||.++|+|-|||+.|++|+++|.++|++||++.
T Consensus 89 vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllS-iIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s 163 (171)
T KOG0425|consen 89 VCISILHPPGDDPSGYELPSERWLPVQTVETILLS-IISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRS 163 (171)
T ss_pred EEEEeecCCCCCcccCCChhhccCCccchhHhHHH-HHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 9999983 579999999999999 9999999999999999999999999999999999999965
No 8
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-44 Score=248.46 Aligned_cols=145 Identities=28% Similarity=0.567 Sum_probs=135.4
Q ss_pred CCC-HHHHHHHHHHhC---CCCCcEEEecCC-----CceEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCceEEecC
Q 031754 1 MSS-PSKRREMDLMKL---MMSDYKVEMIND-----GIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNK 71 (153)
Q Consensus 1 M~~-~~~Rl~~el~~l---~~~~~~v~~~~~-----~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 71 (153)
||+ +..||++|-+.. .+-|+++.|... |+..|.|.|.|+.||+||||.|.+++.||++||.+||++.|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 666 788999988854 788999988863 68999999999999999999999999999999999999999999
Q ss_pred ccccceeCCCCceEcccccCC--CCCCCCHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhh
Q 031754 72 IYHPNIDEMSGSVCLDVINQT--WSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKGIEHFLY 147 (153)
Q Consensus 72 i~Hpnv~~~~G~icl~~l~~~--W~p~~~i~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~~ 147 (153)
+||||||+ +|.|||++|.++ |+|+.||.+||.. |+.||.+||+.+|+|.||...|.+|+.+|+++||.++++++
T Consensus 81 l~HPNVyp-sgtVcLsiL~e~~~W~paitikqiL~g-IqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a 156 (158)
T KOG0424|consen 81 LFHPNVYP-SGTVCLSILNEEKDWRPAITIKQILLG-IQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYA 156 (158)
T ss_pred CcCCCcCC-CCcEehhhhccccCCCchhhHHHHHHH-HHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhc
Confidence 99999996 999999999865 9999999999999 99999999999999999999999999999999999998653
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=2.5e-43 Score=251.61 Aligned_cols=135 Identities=36% Similarity=0.779 Sum_probs=123.5
Q ss_pred HHHHHHHhC---CCCCcEEEecCC-CceEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCceEEecCccccceeCCCC
Q 031754 7 RREMDLMKL---MMSDYKVEMIND-GIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSG 82 (153)
Q Consensus 7 Rl~~el~~l---~~~~~~v~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G 82 (153)
||++|++++ ++.|+++.+.++ |+..|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+++||||+ .+|
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~-~~G 79 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID-ENG 79 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--TTS
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccc-ccc
Confidence 888888865 789999999997 999999999999999999999999999999999999999999999999999 599
Q ss_pred ceEcccccC-CCCCCCCHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 031754 83 SVCLDVINQ-TWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKGIE 143 (153)
Q Consensus 83 ~icl~~l~~-~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~ 143 (153)
.||+++|.. .|+|++++.++|.+ |+++|.+|+.++|+|.+|+++|++|+++|.++||+|.
T Consensus 80 ~icl~~l~~~~W~p~~~i~~il~~-i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 80 RICLDILNPESWSPSYTIESILLS-IQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BBGHGGGTTTTC-TTSHHHHHHHH-HHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred cchhhhhhcccCCcccccccHHHH-HHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 999999985 59999999999999 9999999999999999999999999999999999984
No 10
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-43 Score=251.58 Aligned_cols=148 Identities=71% Similarity=1.242 Sum_probs=144.0
Q ss_pred CCCHHHHHHHHHHhCCCCCcEEEecCCCceEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCceEEecCccccceeCC
Q 031754 1 MSSPSKRREMDLMKLMMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEM 80 (153)
Q Consensus 1 M~~~~~Rl~~el~~l~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~ 80 (153)
|++..|||..|+.+|..++..|...++++.+++|.+.||.+|||+||++++++.+|++||++.|.|.|.++||||||++.
T Consensus 1 ms~~~rRid~Dv~KL~~s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 1 MSSGKRRIDTDVMKLLMSDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred CCCcccchhhHHHHHHhcCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEcccccCCCCCCCCHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhhh
Q 031754 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKGIEHFLYH 148 (153)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~~~ 148 (153)
+|.||+|.++..|+|.+.+..|+...|-.||..||+.||+|.|||.+|..++++|.++||+++++++-
T Consensus 81 SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~ 148 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYAT 148 (189)
T ss_pred cCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998999999999999999999999999999999999999996643
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1.5e-42 Score=247.90 Aligned_cols=136 Identities=38% Similarity=0.805 Sum_probs=129.7
Q ss_pred HHHHHHHHhC---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCceEEecCccccceeCCCC
Q 031754 6 KRREMDLMKL---MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSG 82 (153)
Q Consensus 6 ~Rl~~el~~l---~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G 82 (153)
+||++|++++ ++.|+++.+.++|++.|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||+ .+|
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~-~~G 80 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD-ENG 80 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC-CCC
Confidence 6888888865 668999999999999999999999999999999999999999999999999999999999999 599
Q ss_pred ceEcccccCC-CCCCCCHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 031754 83 SVCLDVINQT-WSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKGIE 143 (153)
Q Consensus 83 ~icl~~l~~~-W~p~~~i~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~ 143 (153)
.||++++... |+|++++.+||.+ |+++|.+|+.++|+|.+||++|++|+++|.++|++|+
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~-i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 81 KICLSILKTHGWSPAYTLRTVLLS-LQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CCchhhcCCCCcCCcCcHHHHHHH-HHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 9999999877 9999999999999 9999999999999999999999999999999999874
No 12
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-42 Score=237.92 Aligned_cols=145 Identities=27% Similarity=0.517 Sum_probs=136.1
Q ss_pred CCC-HHHHHHHHHHhC---CCCCcEEEecC-CCceEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCceEEecCcccc
Q 031754 1 MSS-PSKRREMDLMKL---MMSDYKVEMIN-DGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHP 75 (153)
Q Consensus 1 M~~-~~~Rl~~el~~l---~~~~~~v~~~~-~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hp 75 (153)
|+. |.|||++|++++ ++.|+.+.|.+ +|+++|.|.|.||++|+|+||.|..++.||.|||.+||+++|...+|||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 555 899999999987 78899888876 6899999999999999999999999999999999999999999999999
Q ss_pred ceeCCCCceEccccc-------------CCCCCCCCHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHH
Q 031754 76 NIDEMSGSVCLDVIN-------------QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKGI 142 (153)
Q Consensus 76 nv~~~~G~icl~~l~-------------~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~ 142 (153)
||+. +|+||+++|- +.|+|..+++.||++ +.+||.+||.++++|.+|+.++++|+++|.+.||..
T Consensus 81 Niy~-dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLS-V~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~l 158 (165)
T KOG0426|consen 81 NIYP-DGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLS-VVSMLAEPNDESGANVDACKMWREDREEFEKIAKRL 158 (165)
T ss_pred cccC-CCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHH-HHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHH
Confidence 9995 9999999983 579999999999999 999999999999999999999999999999999999
Q ss_pred HHHhh
Q 031754 143 EHFLY 147 (153)
Q Consensus 143 ~~~~~ 147 (153)
+++-.
T Consensus 159 vrKtL 163 (165)
T KOG0426|consen 159 VRKTL 163 (165)
T ss_pred HHHhh
Confidence 98643
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-42 Score=240.05 Aligned_cols=139 Identities=30% Similarity=0.647 Sum_probs=133.0
Q ss_pred HHHHHHHHHHhC---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCceEEecCccccceeCC
Q 031754 4 PSKRREMDLMKL---MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEM 80 (153)
Q Consensus 4 ~~~Rl~~el~~l---~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~ 80 (153)
..|||+.||+.+ ..+||++.|.++|++.|.++|.||.+|+|+|-.|++.+.||.+||+.||.|+|.|++|||||| .
T Consensus 30 V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD-~ 108 (175)
T KOG0421|consen 30 VTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVD-L 108 (175)
T ss_pred HHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCcc-c
Confidence 479999999988 457899999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCceEcccccCCCCCCCCHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHH
Q 031754 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKGIEHF 145 (153)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~ 145 (153)
.|.||+|||++.|+..|.+..||++ ||+||-+||.++|+|..||+++. |.++|.+.+.++.++
T Consensus 109 ~GnIcLDILkdKWSa~YdVrTILLS-iQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 109 SGNICLDILKDKWSAVYDVRTILLS-IQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE 171 (175)
T ss_pred cccchHHHHHHHHHHHHhHHHHHHH-HHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence 9999999999999999999999999 99999999999999999999997 999999999887764
No 14
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=3.9e-41 Score=241.57 Aligned_cols=139 Identities=34% Similarity=0.729 Sum_probs=131.5
Q ss_pred HHHHHHHHhC---CCCCcEEEecCC-CceEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCceEEecCccccceeCCC
Q 031754 6 KRREMDLMKL---MMSDYKVEMIND-GIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMS 81 (153)
Q Consensus 6 ~Rl~~el~~l---~~~~~~v~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~ 81 (153)
+||++|++.+ +++|+++.+.++ |++.|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||++ +
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~-~ 79 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDS-S 79 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECC-C
Confidence 4888888864 677999988876 9999999999999999999999999999999999999999999999999996 9
Q ss_pred CceEccccc-CCCCCCCCHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHh
Q 031754 82 GSVCLDVIN-QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKGIEHFL 146 (153)
Q Consensus 82 G~icl~~l~-~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~ 146 (153)
|.||++++. ++|+|++++.++|.. |+++|.+|+.++|+|.+|+++|++|+++|.++|++++++.
T Consensus 80 G~icl~~l~~~~W~p~~~l~~il~~-i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~ 144 (145)
T smart00212 80 GEICLDILKQEKWSPATTLETVLLS-IQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKY 144 (145)
T ss_pred CCEehhhcCCCCCCCCCcHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence 999999998 899999999999999 9999999999999999999999999999999999999853
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-38 Score=216.72 Aligned_cols=141 Identities=28% Similarity=0.609 Sum_probs=129.9
Q ss_pred HHHHHHHHHHhCCCCCc----EEEecCCCceEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCceEEecCccccceeC
Q 031754 4 PSKRREMDLMKLMMSDY----KVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDE 79 (153)
Q Consensus 4 ~~~Rl~~el~~l~~~~~----~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~ 79 (153)
+.+||.|||..+...+. .+..+++|+..|++.+. |.+-||..|.|+++|.||.+|||+||+|.|.|+|||||||+
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 67999999998743332 35667789999999998 89999999999999999999999999999999999999997
Q ss_pred CCCceEccccc-CCCCCCCCHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhh
Q 031754 80 MSGSVCLDVIN-QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKGIEHFLY 147 (153)
Q Consensus 80 ~~G~icl~~l~-~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~~ 147 (153)
.|.+|+.++. ++|.|+....+||+. +..++.+|++++|++.|+|..|.+|+..|.++|.++++++.
T Consensus 82 -~gqvClPiis~EnWkP~T~teqVlqa-Li~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~ 148 (153)
T KOG0422|consen 82 -KGQVCLPIISAENWKPATRTEQVLQA-LIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYS 148 (153)
T ss_pred -CCceeeeeeecccccCcccHHHHHHH-HHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhc
Confidence 7999999986 899999999999998 99999999999999999999999999999999999999654
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-37 Score=222.24 Aligned_cols=141 Identities=35% Similarity=0.669 Sum_probs=126.0
Q ss_pred HHHHHHHHHHhC-CCCCcEEEec--CCC--ceEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCceEEecCcccccee
Q 031754 4 PSKRREMDLMKL-MMSDYKVEMI--NDG--IQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNID 78 (153)
Q Consensus 4 ~~~Rl~~el~~l-~~~~~~v~~~--~~~--~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~ 78 (153)
+.-||++|+.++ .+++++.... .++ ..+.+++|. |.++.|.||.|.|.+.+|+.||+.||+|.|.|+|||||||
T Consensus 29 a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId 107 (184)
T KOG0420|consen 29 ALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNID 107 (184)
T ss_pred HHHHHHhhhhhccCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcC
Confidence 577999999977 5566653322 233 335899997 9999999999999999999999999999999999999999
Q ss_pred CCCCceEcccccCCCCCCCCHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHhh
Q 031754 79 EMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKGIEHFLY 147 (153)
Q Consensus 79 ~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~~ 147 (153)
. +|.||++||+++|+|..++.+|+.+ ++.||.+|+++||+|.|||..+++|++.|..+||......+
T Consensus 108 ~-~GnVCLnILRedW~P~lnL~sIi~G-L~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~ 174 (184)
T KOG0420|consen 108 L-DGNVCLNILREDWRPVLNLNSIIYG-LQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGC 174 (184)
T ss_pred C-cchHHHHHHHhcCccccchHHHHHH-HHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCc
Confidence 5 9999999999999999999999988 99999999999999999999999999999999999887543
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-35 Score=210.66 Aligned_cols=139 Identities=27% Similarity=0.588 Sum_probs=134.0
Q ss_pred HHHHHHHHHHhC---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCceEEecCccccceeCC
Q 031754 4 PSKRREMDLMKL---MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEM 80 (153)
Q Consensus 4 ~~~Rl~~el~~l---~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~ 80 (153)
..+.+.+|+..+ ++.||+|.+.++|.....+.|.||.||||++|.|+..+.+..|||.+||+-+|.|+||||||- .
T Consensus 11 vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa-a 89 (223)
T KOG0423|consen 11 VIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA-A 89 (223)
T ss_pred HHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc-c
Confidence 367888999976 888999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCceEcccccCCCCCCCCHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 031754 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRAAYEQRVKGIEH 144 (153)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~ 144 (153)
+|.||.+.|+.+|+|..+|..||.. |.+||..|++++.+|.+|.+++.+|.++|.++||-++.
T Consensus 90 NGEICVNtLKkDW~p~LGirHvLlt-ikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~Te 152 (223)
T KOG0423|consen 90 NGEICVNTLKKDWNPSLGIRHVLLT-IKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTE 152 (223)
T ss_pred CceehhhhhhcccCcccchhhHhhh-hheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999 99999999999999999999999999999999999987
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7e-30 Score=175.30 Aligned_cols=117 Identities=25% Similarity=0.582 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhC---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCceEEecCc-cccceeC
Q 031754 4 PSKRREMDLMKL---MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKI-YHPNIDE 79 (153)
Q Consensus 4 ~~~Rl~~el~~l---~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv~~ 79 (153)
+.+||+|||.++ +|.|+... ..+|+..|.+.+.|.+||.|+|.+|.++++||+.||++.|+|.|+.++ .||+||
T Consensus 16 at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiY- 93 (161)
T KOG0427|consen 16 ATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIY- 93 (161)
T ss_pred HHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCcee-
Confidence 689999999965 78899888 457999999999999999999999999999999999999999999986 899999
Q ss_pred CCCceEcccccCCCCCCCCHHHHHHHHHHHhhc-CCCCCCCccHH
Q 031754 80 MSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLL-YPNPSDPLNGE 123 (153)
Q Consensus 80 ~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~-~p~~~~p~n~~ 123 (153)
++|.||+|+|.+.|+|++++.+|.++ |.+||. ..+...|.+.+
T Consensus 94 SNGHICL~iL~d~WsPAmsv~SvClS-IlSMLSSs~eKqrP~Dn~ 137 (161)
T KOG0427|consen 94 SNGHICLDILYDSWSPAMSVQSVCLS-ILSMLSSSKEKQRPTDND 137 (161)
T ss_pred cCCeEEEEeecccCCcchhhHHHHHH-HHHHHccCccccCCCccc
Confidence 59999999999999999999999999 888887 44555565444
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.2e-27 Score=172.65 Aligned_cols=130 Identities=22% Similarity=0.489 Sum_probs=106.1
Q ss_pred CCC--HHHHHHHHHHhC---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCceEEecC--cc
Q 031754 1 MSS--PSKRREMDLMKL---MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNK--IY 73 (153)
Q Consensus 1 M~~--~~~Rl~~el~~l---~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~--i~ 73 (153)
|++ +.+||+||++.+ +.++|.+.|.++|+.+||.++.||++|||+||.|+.++.||++||++||.|++.|+ .|
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRF 80 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRF 80 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCce
Confidence 666 799999999966 78899999999999999999999999999999999999999999999999999996 34
Q ss_pred ccceeCCCCceEcccc---cCCCCCCCCHHHHHHHHHHHhhcC--CCCCCCccHH-HHHHHHhCHHHHH
Q 031754 74 HPNIDEMSGSVCLDVI---NQTWSPMFDLVNVFEVFLPQLLLY--PNPSDPLNGE-AAALLMRDRAAYE 136 (153)
Q Consensus 74 Hpnv~~~~G~icl~~l---~~~W~p~~~i~~il~~~i~~ll~~--p~~~~p~n~~-a~~~~~~~~~~f~ 136 (153)
-+| -++||++- .+.|+|++++..||.+ +.++|.+ |...+..-.+ -.++|+.+.-+|+
T Consensus 81 ktn-----tRLCLSiSDfHPdsWNP~WsVStILtG-LlSFM~e~~pTtGSI~tS~~~kr~lA~~SlaFN 143 (244)
T KOG0894|consen 81 KTN-----TRLCLSISDFHPDSWNPGWSVSTILTG-LLSFMTEDSPTTGSIETSDQDKRMLAKSSLAFN 143 (244)
T ss_pred ecC-----ceEEEeccccCcCcCCCcccHHHHHHH-HHHHHhcCCCccCcccccHHHHHHHHHhhhhhc
Confidence 444 67999764 5999999999999999 6666653 4555543222 3455555555555
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.4e-23 Score=155.69 Aligned_cols=136 Identities=21% Similarity=0.334 Sum_probs=121.2
Q ss_pred HHHHHH---hCCCCCcEEEecCCCceEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCC--CCCceEEecCccccceeCCCC
Q 031754 8 REMDLM---KLMMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPY--KSPSIGFVNKIYHPNIDEMSG 82 (153)
Q Consensus 8 l~~el~---~l~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~--~pP~v~f~t~i~Hpnv~~~~G 82 (153)
|+.|+. +.+.+||+|.|+-.|-+.|.++|++ ..+.|.||+|+|.|.+|++||. +.|+|.|.+.+|||+|.+.++
T Consensus 24 llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~sk 102 (258)
T KOG0429|consen 24 LLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSK 102 (258)
T ss_pred HHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCcc
Confidence 444444 2367899999999999999999994 5678999999999999999995 689999999999999999999
Q ss_pred ceEcccccCCCCCC-CCHHHHHHHHHHHhhcCCCCCCC--ccHHHHHHHHhCHHHHHHHHHHHHHH
Q 031754 83 SVCLDVINQTWSPM-FDLVNVFEVFLPQLLLYPNPSDP--LNGEAAALLMRDRAAYEQRVKGIEHF 145 (153)
Q Consensus 83 ~icl~~l~~~W~p~-~~i~~il~~~i~~ll~~p~~~~p--~n~~a~~~~~~~~~~f~~~~~~~~~~ 145 (153)
.+|++-....|+-. ..|..+|.. ++..|++|+.+.+ .|+||+.+|++++++|.++|+++++-
T Consensus 103 eLdl~raf~eWRk~ehhiwqvL~y-lqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~ 167 (258)
T KOG0429|consen 103 ELDLNRAFPEWRKEEHHIWQVLVY-LQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKA 167 (258)
T ss_pred ceeHhhhhhhhhccccHHHHHHHH-HHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99998877779664 599999988 9999999998776 59999999999999999999999983
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.2e-21 Score=147.67 Aligned_cols=109 Identities=23% Similarity=0.500 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhCCCC--CcEEEecCCCceEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCceEEecCccccceeCCC
Q 031754 4 PSKRREMDLMKLMMS--DYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMS 81 (153)
Q Consensus 4 ~~~Rl~~el~~l~~~--~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~ 81 (153)
+.|||++|.+++..+ .+-..+.++|+++|+++|.||.+|-|+||+|+.+|.||.|||++||.+-.+|+--..- .+
T Consensus 12 aVkRlmkEa~El~~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE---~n 88 (314)
T KOG0428|consen 12 AVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRFE---VN 88 (314)
T ss_pred HHHHHHHHHHHhcCchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCcee---eC
Confidence 689999999988443 4778899999999999999999999999999999999999999999999888532222 34
Q ss_pred CceEcccc---cCCCCCCCCHHHHHHHHHHHhhcCCC
Q 031754 82 GSVCLDVI---NQTWSPMFDLVNVFEVFLPQLLLYPN 115 (153)
Q Consensus 82 G~icl~~l---~~~W~p~~~i~~il~~~i~~ll~~p~ 115 (153)
-+||+++- .+.|.|+|++...|..+|-.|=..|+
T Consensus 89 kKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~ 125 (314)
T KOG0428|consen 89 KKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPE 125 (314)
T ss_pred ceEEEEecCCCccccCcchhHHHHHHHHHccccCCCC
Confidence 68999886 48999999999999883444434554
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=4.5e-17 Score=142.81 Aligned_cols=96 Identities=25% Similarity=0.560 Sum_probs=89.5
Q ss_pred CCCCcEEEecCCCceEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCceEEecC--ccccceeCCCCceEccccc---
Q 031754 16 MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNK--IYHPNIDEMSGSVCLDVIN--- 90 (153)
Q Consensus 16 ~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~--i~Hpnv~~~~G~icl~~l~--- 90 (153)
.+.||.|...++.+...++.|.|+.+|||.+|.|.|.|.||.+||..||.|...+. .++||.|+ +|+||+++|.
T Consensus 867 ~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~-~g~vc~s~l~tw~ 945 (1101)
T KOG0895|consen 867 LPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYE-DGKVCLSLLNTWH 945 (1101)
T ss_pred CCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccccc-ccceehhhhcccc
Confidence 67899999999999999999999999999999999999999999999999999985 58999996 9999999995
Q ss_pred ----CCCCCCCCHHHHHHHHHHHhhcC
Q 031754 91 ----QTWSPMFDLVNVFEVFLPQLLLY 113 (153)
Q Consensus 91 ----~~W~p~~~i~~il~~~i~~ll~~ 113 (153)
+-|+|+-++.++|.+ ||.|+-+
T Consensus 946 g~~~e~w~~~s~~lq~l~s-~q~l~l~ 971 (1101)
T KOG0895|consen 946 GRGNEVWNPSSSILQVLVS-IQGLVLN 971 (1101)
T ss_pred CCCccccCcchhHHHHHHH-hhhhhcc
Confidence 679999999999999 9998863
No 23
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=7.6e-15 Score=101.62 Aligned_cols=107 Identities=18% Similarity=0.279 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhC----CCCCcEEEecCC-C--ceEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCceEEecCccccc
Q 031754 4 PSKRREMDLMKL----MMSDYKVEMIND-G--IQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPN 76 (153)
Q Consensus 4 ~~~Rl~~el~~l----~~~~~~v~~~~~-~--~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpn 76 (153)
+.-||++|+.+= -+..++....++ | +..|..+|.||+.|+||+.+|.++|.+.++||..||+|+|.+++.-..
T Consensus 6 rnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~g 85 (138)
T KOG0896|consen 6 RNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNG 85 (138)
T ss_pred cchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecc
Confidence 345888888743 333455555544 3 678999999999999999999999999999999999999999999999
Q ss_pred eeCCCCceEcccc--cCCCCCCCCHHHHHHHHHHHhh
Q 031754 77 IDEMSGSVCLDVI--NQTWSPMFDLVNVFEVFLPQLL 111 (153)
Q Consensus 77 v~~~~G~icl~~l--~~~W~p~~~i~~il~~~i~~ll 111 (153)
|+..+|.+.-..+ ..+|+-.++++.+|.. +..++
T Consensus 86 vn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~-lr~~m 121 (138)
T KOG0896|consen 86 VNSSNGVVDPRDITVLARWQRSYSIKMVLGQ-LRKEM 121 (138)
T ss_pred cccCCCccCccccchhhcccccchhhHHHHh-hhHHH
Confidence 9988888865333 3799999999999988 65433
No 24
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.8e-14 Score=126.72 Aligned_cols=109 Identities=26% Similarity=0.539 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhC---CCCCcEEEecCCCceEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCceEEecC---ccccce
Q 031754 4 PSKRREMDLMKL---MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNK---IYHPNI 77 (153)
Q Consensus 4 ~~~Rl~~el~~l---~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~---i~Hpnv 77 (153)
-.+|+.+|++-+ .+.|+.+.+.+.++...++.|.||.+|||++|+|.|.|.||..||..||.|.+.+. .+.||.
T Consensus 283 ~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNl 362 (1101)
T KOG0895|consen 283 WSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNL 362 (1101)
T ss_pred hHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCc
Confidence 368999999854 67889999999999999999999999999999999999999999999999999986 689999
Q ss_pred eCCCCceEccccc-------CCCCCC-CCHHHHHHHHHHHhhcCC
Q 031754 78 DEMSGSVCLDVIN-------QTWSPM-FDLVNVFEVFLPQLLLYP 114 (153)
Q Consensus 78 ~~~~G~icl~~l~-------~~W~p~-~~i~~il~~~i~~ll~~p 114 (153)
|. +|+||+++|. +.|+|. .++.++|.. ||.++.+-
T Consensus 363 Yn-~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~s-IQ~Li~~e 405 (1101)
T KOG0895|consen 363 YN-DGKVCLSLLGTWTGSRREKWTPNGSSLLQVLES-IQGLILNE 405 (1101)
T ss_pred cc-CceEEeeeeeecccccccCCCccccchhhhhhh-hhhhhccc
Confidence 95 9999999984 689998 799999999 99998754
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.6e-08 Score=67.40 Aligned_cols=92 Identities=15% Similarity=0.300 Sum_probs=63.3
Q ss_pred EEEEEEeCCCCCCCCCceEEecCccccceeCCCCceEccccc-CCCCCCCCHHHHHHHHHHHhhcCCC--CCCCccHHHH
Q 031754 49 WRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSVCLDVIN-QTWSPMFDLVNVFEVFLPQLLLYPN--PSDPLNGEAA 125 (153)
Q Consensus 49 f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~icl~~l~-~~W~p~~~i~~il~~~i~~ll~~p~--~~~p~n~~a~ 125 (153)
.-+.+.|+++||+.||.++...++..-.---.+|+||+.++. ++|+.+++++.++++ |..++-... ...+++.+-.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~q-iaatlVkG~~ri~~~a~k~sk 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQ-IAATLVKGGARIEFPAEKSSK 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHH-HHHHhhccceeEecCcchhhh
Confidence 456788999999999999987764333222248999999996 799999999999999 777776543 3455554433
Q ss_pred HHHHh--CHHHHHHHHHHH
Q 031754 126 ALLMR--DRAAYEQRVKGI 142 (153)
Q Consensus 126 ~~~~~--~~~~f~~~~~~~ 142 (153)
+|.. -.+.|+..++..
T Consensus 92 -~~s~~qa~~sfksLv~~h 109 (122)
T KOG0897|consen 92 -LYSHSQAQQSFKSLVQIH 109 (122)
T ss_pred -HhhHHHHHHHHHHHHHHH
Confidence 4422 233454444443
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.59 E-value=2.1e-07 Score=65.75 Aligned_cols=66 Identities=26% Similarity=0.631 Sum_probs=58.8
Q ss_pred CCcEEEEEEEeCCCCCCCCCceEEecCc---cccceeCCCCceEc---ccccCCCCCCCCHHHHHHHHHHHhhc
Q 031754 45 HGGVWRIRVELPDAYPYKSPSIGFVNKI---YHPNIDEMSGSVCL---DVINQTWSPMFDLVNVFEVFLPQLLL 112 (153)
Q Consensus 45 ~gg~f~~~i~fp~~yP~~pP~v~f~t~i---~Hpnv~~~~G~icl---~~l~~~W~p~~~i~~il~~~i~~ll~ 112 (153)
.|+.+.+.|.+|++||..||.|....+. +-|||+. +|.+|+ ...-+.|.|.-.+..+|.. ...+|.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~-~G~LCl~~~~~~~D~~~P~~~~~~~l~~-a~~lL~ 105 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVES-DGKLCLLDEELVLDPWDPEGIIADCLER-AIRLLE 105 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcC-CCeEEEecCCcccCccCHHHHHHHHHHH-HHHHHH
Confidence 6899999999999999999999888644 6899995 999999 7777999999999999988 777776
No 27
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.48 E-value=6.4e-08 Score=68.03 Aligned_cols=103 Identities=17% Similarity=0.296 Sum_probs=52.7
Q ss_pred HHHHHHHHHhCCCCCcEEEecCCCceEEEEEEeCCCCCCCCC----------cEEEEEEEeCCCCCCCCCceEEec-Ccc
Q 031754 5 SKRREMDLMKLMMSDYKVEMINDGIQEFYVHFQGPNESPYHG----------GVWRIRVELPDAYPYKSPSIGFVN-KIY 73 (153)
Q Consensus 5 ~~Rl~~el~~l~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~g----------g~f~~~i~fp~~yP~~pP~v~f~t-~i~ 73 (153)
.+||.+|+..|.. +|+..+++...|.-.=..+.||-|.| ..|.+++.+|..||..||.+.... .--
T Consensus 26 ~~RLKEEy~aLI~---Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLdGK 102 (161)
T PF08694_consen 26 VQRLKEEYQALIK---YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPELDGK 102 (161)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGGTTT
T ss_pred HHHHHHHHHHHHH---HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceeccccCCc
Confidence 5799999986521 22222222333322222334444443 346677778999999999998764 234
Q ss_pred ccceeCCCCceEccccc----CCCCCCCCHHHHHHHHHHHhh
Q 031754 74 HPNIDEMSGSVCLDVIN----QTWSPMFDLVNVFEVFLPQLL 111 (153)
Q Consensus 74 Hpnv~~~~G~icl~~l~----~~W~p~~~i~~il~~~i~~ll 111 (153)
....| .+|+||++.++ ..-.|.++|...|..++--.|
T Consensus 103 TaKMY-RGGkIClt~HFkPLWakN~PkfGIaHalaLGL~PWL 143 (161)
T PF08694_consen 103 TAKMY-RGGKICLTDHFKPLWAKNVPKFGIAHALALGLGPWL 143 (161)
T ss_dssp -SSBC-CCCBB---TTHHHHHHCTTTT--HHHHHHHTHHHHH
T ss_pred hhhhh-cCceEeeecccchhhhhcCCchhHHHHHHhccchhh
Confidence 56778 49999999986 345788999988765454444
No 28
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.10 E-value=1.5e-05 Score=55.51 Aligned_cols=77 Identities=25% Similarity=0.506 Sum_probs=50.2
Q ss_pred ceEEEEEEeCCCCCCCCCcEE--EEEEEeCCCCCCCCCceEEecCc-----cccceeCCCCceEcccccCCCCC-CCCHH
Q 031754 29 IQEFYVHFQGPNESPYHGGVW--RIRVELPDAYPYKSPSIGFVNKI-----YHPNIDEMSGSVCLDVINQTWSP-MFDLV 100 (153)
Q Consensus 29 ~~~w~~~i~gp~~t~y~gg~f--~~~i~fp~~yP~~pP~v~f~t~i-----~Hpnv~~~~G~icl~~l~~~W~p-~~~i~ 100 (153)
+....++| .-.|+|..| .+.|.+|.+||.+||.|...... -+.+|| .+|+|.+..|. +|++ ..++.
T Consensus 32 LL~L~Gti----pi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd-~~G~v~~pyL~-~W~~~~s~L~ 105 (121)
T PF05743_consen 32 LLCLYGTI----PITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVD-SNGRVYLPYLQ-NWNPPSSNLV 105 (121)
T ss_dssp EEEEEEEE----EECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB--TTSBB-SHHHH-T--TTTS-HH
T ss_pred EEEEecCc----ccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeEC-CCCCEeCchhc-cCCCCCCCHH
Confidence 33444444 335778777 67778999999999999886532 244999 49999888875 6877 77888
Q ss_pred HHHHHHHHHhhc
Q 031754 101 NVFEVFLPQLLL 112 (153)
Q Consensus 101 ~il~~~i~~ll~ 112 (153)
+++.. ++..|.
T Consensus 106 ~lv~~-l~~~F~ 116 (121)
T PF05743_consen 106 DLVQE-LQAVFS 116 (121)
T ss_dssp HHHHH-HHHCCC
T ss_pred HHHHH-HHHHHh
Confidence 88877 666654
No 29
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.00012 Score=51.06 Aligned_cols=103 Identities=17% Similarity=0.337 Sum_probs=67.8
Q ss_pred HHHHHHHHHhCCCCCcEEEecCCCceEEEEEEeCCCCCCCCC----------cEEEEEEEeCCCCCCCCCceEEec-Ccc
Q 031754 5 SKRREMDLMKLMMSDYKVEMINDGIQEFYVHFQGPNESPYHG----------GVWRIRVELPDAYPYKSPSIGFVN-KIY 73 (153)
Q Consensus 5 ~~Rl~~el~~l~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~g----------g~f~~~i~fp~~yP~~pP~v~f~t-~i~ 73 (153)
.+||.+|+..+. -+|+..+++...|.-.--.++||-|-| ..|.+++.+|-.||...|.+.... .--
T Consensus 29 vqrlkeey~sli---~yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgk 105 (167)
T KOG3357|consen 29 VQRLKEEYQSLI---AYVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGK 105 (167)
T ss_pred HHHHHHHHHHHH---HHHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCch
Confidence 578999988663 234444555556655445578888877 346667777999999999987643 123
Q ss_pred ccceeCCCCceEccccc-CCC---CCCCCHHHHHHHHHHHhh
Q 031754 74 HPNIDEMSGSVCLDVIN-QTW---SPMFDLVNVFEVFLPQLL 111 (153)
Q Consensus 74 Hpnv~~~~G~icl~~l~-~~W---~p~~~i~~il~~~i~~ll 111 (153)
.-..+ .+|+||+.-.. .-| .|.+++...+..++.-.|
T Consensus 106 takmy-rggkiclt~hfkplwarn~pkfgiaha~algl~pwl 146 (167)
T KOG3357|consen 106 TAKMY-RGGKICLTDHFKPLWARNVPKFGIAHAMALGLAPWL 146 (167)
T ss_pred hhhhh-cCceEeeccccchhhhhcCcchhHHHHHHhccchhh
Confidence 34566 48999997654 445 567777777644344443
No 30
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.99 E-value=0.012 Score=40.84 Aligned_cols=92 Identities=21% Similarity=0.348 Sum_probs=64.6
Q ss_pred CCCCCcEEEecCCCceEEEEEEeC--CCCCCCCCcEEEEEEEeCCCCCCCCCceEEecCccccceeCCCCce--Eccc--
Q 031754 15 LMMSDYKVEMINDGIQEFYVHFQG--PNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV--CLDV-- 88 (153)
Q Consensus 15 l~~~~~~v~~~~~~~~~w~~~i~g--p~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~i--cl~~-- 88 (153)
|...|+..+...+.-..|.+ |.| -+.+.|.+..-.+.|.+|+.||..+|...+..+-.... .+|.| |-+.
T Consensus 9 L~~~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~---~G~~iP~~~~~~~ 84 (122)
T PF14462_consen 9 LDGRGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA---DGGPIPNAAEVTQ 84 (122)
T ss_pred HHhcCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc---CCCcCCchhcchh
Confidence 34567888887777777876 544 46778999999999999999999999877765433222 12334 4322
Q ss_pred ------------ccCCCCCCC-CHHHHHHHHHHHhh
Q 031754 89 ------------INQTWSPMF-DLVNVFEVFLPQLL 111 (153)
Q Consensus 89 ------------l~~~W~p~~-~i~~il~~~i~~ll 111 (153)
....|.|.. ++.+.|.. |...|
T Consensus 85 ~~~G~~wQrWSRH~~~W~P~~D~l~T~l~~-v~~~L 119 (122)
T PF14462_consen 85 TFDGRTWQRWSRHNNPWRPGVDDLWTHLAR-VEHAL 119 (122)
T ss_pred hcCCeeeeeecCCCCCCCCCCCcHHHHHHH-HHHHH
Confidence 125798976 88888877 66655
No 31
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.011 Score=47.55 Aligned_cols=76 Identities=28% Similarity=0.492 Sum_probs=57.0
Q ss_pred EeCCCCCCCCCcEE--EEEEEeCCCCCCCCCceEEecC-----ccccceeCCCCceEcccccCCCCC-CCCHHHHHHHHH
Q 031754 36 FQGPNESPYHGGVW--RIRVELPDAYPYKSPSIGFVNK-----IYHPNIDEMSGSVCLDVINQTWSP-MFDLVNVFEVFL 107 (153)
Q Consensus 36 i~gp~~t~y~gg~f--~~~i~fp~~yP~~pP~v~f~t~-----i~Hpnv~~~~G~icl~~l~~~W~p-~~~i~~il~~~i 107 (153)
+.|---.+|.|..| .+.|.+.+.||..||.+..... -.|-+||. +|.|-|..|. +|.+ +..+..++.. +
T Consensus 55 ~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~-nG~V~LPYLh-~W~~pssdLv~Liq~-l 131 (365)
T KOG2391|consen 55 LDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDP-NGKVYLPYLH-NWDPPSSDLVGLIQE-L 131 (365)
T ss_pred ccCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCC-CCeEechhhc-cCCCccchHHHHHHH-H
Confidence 34444557888776 5677789999999999977542 14899995 9999999985 6865 6688888877 6
Q ss_pred HHhhcCC
Q 031754 108 PQLLLYP 114 (153)
Q Consensus 108 ~~ll~~p 114 (153)
...|.++
T Consensus 132 ~a~f~~~ 138 (365)
T KOG2391|consen 132 IAAFSED 138 (365)
T ss_pred HHHhcCC
Confidence 6666654
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.81 E-value=0.025 Score=37.79 Aligned_cols=46 Identities=15% Similarity=0.222 Sum_probs=29.2
Q ss_pred CCCceEEEEEEeC--CCCCCCCCcEEEEEEEeCCCCCCCCCceEEecC
Q 031754 26 NDGIQEFYVHFQG--PNESPYHGGVWRIRVELPDAYPYKSPSIGFVNK 71 (153)
Q Consensus 26 ~~~~~~w~~~i~g--p~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 71 (153)
..+...+.+.+.+ ...+.-....+.+.+.||++||..+|.|...+.
T Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 26 SKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp SSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred cCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 3445566666632 233344466899999999999999999987764
No 33
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.12 E-value=0.03 Score=40.89 Aligned_cols=62 Identities=21% Similarity=0.359 Sum_probs=48.4
Q ss_pred EEEEEeCCCCCCCCCceEEecCc---cccceeCCC-----CceEccccc-CCCCCCCCHHHHHHHHHHHhhcC
Q 031754 50 RIRVELPDAYPYKSPSIGFVNKI---YHPNIDEMS-----GSVCLDVIN-QTWSPMFDLVNVFEVFLPQLLLY 113 (153)
Q Consensus 50 ~~~i~fp~~yP~~pP~v~f~t~i---~Hpnv~~~~-----G~icl~~l~-~~W~p~~~i~~il~~~i~~ll~~ 113 (153)
.+.|.|+.+||..+|.|.+.... .+|+++. . ..+|+.--. ..|.+..++..+|.. |..+|.+
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~-~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~r-l~~Wl~~ 126 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNP-GPEGEPVSLCLYEGPWSEWRPSWGPEGFLDR-LFDWLRD 126 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCC-CCCCCCccceEecCCHHHhhhccCHHHHHHH-HHHHHHH
Confidence 46789999999999988777543 3577773 4 678985543 679999999999998 8888864
No 34
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=94.62 E-value=0.31 Score=32.09 Aligned_cols=27 Identities=30% Similarity=0.617 Sum_probs=22.8
Q ss_pred CCcEEEEEEEeCCCCCCCCCceEEecC
Q 031754 45 HGGVWRIRVELPDAYPYKSPSIGFVNK 71 (153)
Q Consensus 45 ~gg~f~~~i~fp~~yP~~pP~v~f~t~ 71 (153)
..-.+.+.+.||++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999988763
No 35
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.93 E-value=4.1 Score=36.70 Aligned_cols=65 Identities=22% Similarity=0.386 Sum_probs=43.8
Q ss_pred HHHHHHHHhC--CCCCcEEEecCCCceEEEEEEeCCCCCCCCCcEE-EEEEEeCCCCCCC-CCceEEecC
Q 031754 6 KRREMDLMKL--MMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVW-RIRVELPDAYPYK-SPSIGFVNK 71 (153)
Q Consensus 6 ~Rl~~el~~l--~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f-~~~i~fp~~yP~~-pP~v~f~t~ 71 (153)
+-|.+|+.-+ .-+.+.++-.+..-..-.+++-||-.. -.|.+| ++.|.||.+||.+ +|.++|..+
T Consensus 423 QnLgeE~S~Ig~k~~nV~fEkidva~Rsctvsln~p~~~-~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 423 QNLGEEFSLIGVKIRNVNFEKIDVADRSCTVSLNCPNHR-VDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhHHhHHhHhhccccccceEeeccccceEEEEecCCCCc-cccceeEEEEEeccccCCCCCCCceEEecC
Confidence 4556666644 334566665555556677777766433 355555 8999999999995 899999753
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=83.61 E-value=4.1 Score=31.02 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=26.9
Q ss_pred CceEEEEEEeCCCCC--CCCCcEEEEEEEeCCCCCCCCCceEEe
Q 031754 28 GIQEFYVHFQGPNES--PYHGGVWRIRVELPDAYPYKSPSIGFV 69 (153)
Q Consensus 28 ~~~~w~~~i~gp~~t--~y~gg~f~~~i~fp~~yP~~pP~v~f~ 69 (153)
++..+.++|.-..+. -+.| .+.+.+.++++||..+|-+.+.
T Consensus 29 ~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 29 DPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred CCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceecc
Confidence 333356666522222 2323 7899999999999999999443
No 37
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=73.25 E-value=7.6 Score=31.02 Aligned_cols=83 Identities=18% Similarity=0.366 Sum_probs=49.7
Q ss_pred HHHHHHHHhCC-CCCcEEEecCCCceEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCceEEecCccccceeCCCCce
Q 031754 6 KRREMDLMKLM-MSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNIDEMSGSV 84 (153)
Q Consensus 6 ~Rl~~el~~l~-~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~G~i 84 (153)
.+|.+|+..+. ...+.+.. ++++...++.+. ++ .....++|.++.+||.++|.+...-++ .
T Consensus 102 s~ll~EIe~IGW~kl~~i~~-d~~ls~i~l~~~---D~---~R~H~l~l~l~~~yp~~~p~~~~~~P~-~---------- 163 (291)
T PF09765_consen 102 SNLLKEIEAIGWDKLVQIQF-DDDLSTIKLKIF---DS---SRQHYLELKLPSNYPFEPPSCSLDLPI-P---------- 163 (291)
T ss_dssp -CHHHHHHHHHCGCCEEEEE--CCCSEEEEEEE---TT---CEEEEEEEETTTTTTTSEEEECS-TTS------------
T ss_pred HHHHHHHHHhccccceEEec-CCCccEEEEEEE---cC---CceEEEEEEECCCCCCCCceeeCCCCc-c----------
Confidence 46777777662 23333332 567888888886 22 267789999999999999975422211 1
Q ss_pred EcccccCCCCC-CCCHHHHHHHHHHHhh
Q 031754 85 CLDVINQTWSP-MFDLVNVFEVFLPQLL 111 (153)
Q Consensus 85 cl~~l~~~W~p-~~~i~~il~~~i~~ll 111 (153)
+...|.+ ..++.+++.. ++..+
T Consensus 164 ----~~~~w~~~~ssL~~v~~q-F~~~l 186 (291)
T PF09765_consen 164 ----FSLSWSPSQSSLKDVVQQ-FQEAL 186 (291)
T ss_dssp ----HHHHHHCHT-SHHHHHHH-HHHHH
T ss_pred ----hhhhhcccccCHHHHHHH-HHHHH
Confidence 1124666 5677777766 44433
No 38
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=56.16 E-value=42 Score=21.59 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=30.1
Q ss_pred eEEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCceEEecCcccc
Q 031754 30 QEFYVHFQGPNESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHP 75 (153)
Q Consensus 30 ~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hp 75 (153)
..|.+-+.|+.+.....-+=++.+.+.+.|+. |...+..+.|.-
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPFev 45 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPFEV 45 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTEEE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCCEE
Confidence 57999999988765555666899999999886 666666664443
No 39
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=48.56 E-value=30 Score=28.25 Aligned_cols=34 Identities=26% Similarity=0.490 Sum_probs=29.5
Q ss_pred CCCCcEEEEEEEeCCCCCCCCCceEEec-Cccccc
Q 031754 43 PYHGGVWRIRVELPDAYPYKSPSIGFVN-KIYHPN 76 (153)
Q Consensus 43 ~y~gg~f~~~i~fp~~yP~~pP~v~f~t-~i~Hpn 76 (153)
||.|...+-+|.|...+|..||-+.|-. .-|+|-
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 5889999999999999999999999973 348884
No 40
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=45.00 E-value=49 Score=25.95 Aligned_cols=44 Identities=14% Similarity=0.434 Sum_probs=28.9
Q ss_pred ceEEEEEEeCCCCCCC-CC---cEEEEEEEeC-----CCCCCCCCceEEecCcc
Q 031754 29 IQEFYVHFQGPNESPY-HG---GVWRIRVELP-----DAYPYKSPSIGFVNKIY 73 (153)
Q Consensus 29 ~~~w~~~i~gp~~t~y-~g---g~f~~~i~fp-----~~yP~~pP~v~f~t~i~ 73 (153)
..-|.+... ..+|.- .| ..|+.++.+. .|-||+||+|..+++-|
T Consensus 102 p~PWkl~Yr-V~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 102 PIPWKLYYR-VEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CCCeEEEEE-eecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 334666555 333332 23 4466777775 68899999999998754
No 41
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=44.77 E-value=36 Score=24.92 Aligned_cols=41 Identities=24% Similarity=0.432 Sum_probs=23.6
Q ss_pred cCccc---cceeCCCCceEcccccCCCCCCCCHHHHHHHHHHHhhcCC
Q 031754 70 NKIYH---PNIDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYP 114 (153)
Q Consensus 70 t~i~H---pnv~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p 114 (153)
|+.|| +||+. +|.||+.... .|.......+..+-..+|..+
T Consensus 90 T~Ly~aPf~NV~~-~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ 133 (175)
T PF14460_consen 90 TPLYHAPFFNVYS-NGSVCWGNNS---LPKISTLASIEAWEDAFFNSP 133 (175)
T ss_pred CeeEeCCccccCC-CCcEeeCCCc---CCCccCHHHHHHHHHHHhCCC
Confidence 45565 59994 9999997743 233433444555234444444
No 42
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=44.55 E-value=34 Score=24.17 Aligned_cols=24 Identities=38% Similarity=0.725 Sum_probs=21.7
Q ss_pred CcEEEEEEEeCCCCC-CCCCceEEe
Q 031754 46 GGVWRIRVELPDAYP-YKSPSIGFV 69 (153)
Q Consensus 46 gg~f~~~i~fp~~yP-~~pP~v~f~ 69 (153)
.|.|.|.-.+|-.|| ..||.|-|.
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 489999999999999 999998876
No 43
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=44.43 E-value=32 Score=28.05 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=21.6
Q ss_pred CcEEEEEEEeCCCCCCCCCceEEec
Q 031754 46 GGVWRIRVELPDAYPYKSPSIGFVN 70 (153)
Q Consensus 46 gg~f~~~i~fp~~yP~~pP~v~f~t 70 (153)
+-.|-+.|.+|..||...|.++|.+
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe
Confidence 3457888889999999999999986
No 44
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=44.37 E-value=23 Score=26.90 Aligned_cols=55 Identities=25% Similarity=0.399 Sum_probs=41.6
Q ss_pred CCCCceEEecCcccccee-CCCCceEcccccCCC--CCCCCHHHHHHHHHHHhhcCCCC
Q 031754 61 YKSPSIGFVNKIYHPNID-EMSGSVCLDVINQTW--SPMFDLVNVFEVFLPQLLLYPNP 116 (153)
Q Consensus 61 ~~pP~v~f~t~i~Hpnv~-~~~G~icl~~l~~~W--~p~~~i~~il~~~i~~ll~~p~~ 116 (153)
..||.|.|-.+.|...|| ++.|.|--.+-..+| -|.-.+.+-|.. |-.++-.|+.
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkr-if~~lg~p~e 224 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKR-IFRLLGTPTE 224 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHH-HHHHhCCCcc
Confidence 479999999999999988 334555445555666 677888888888 8888877754
No 45
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=44.12 E-value=40 Score=26.03 Aligned_cols=37 Identities=19% Similarity=0.370 Sum_probs=22.3
Q ss_pred cCccc---cceeCCCCceEcccccCCCCCCC-CHHHHHHHHHHHhhc
Q 031754 70 NKIYH---PNIDEMSGSVCLDVINQTWSPMF-DLVNVFEVFLPQLLL 112 (153)
Q Consensus 70 t~i~H---pnv~~~~G~icl~~l~~~W~p~~-~i~~il~~~i~~ll~ 112 (153)
|+.|| +||++ +|.||+.... .|.. ++.+ +.. ....|.
T Consensus 131 T~L~~aPffNV~~-~G~VC~G~~~---~P~~~~~~~-i~~-we~~FF 171 (228)
T TIGR03737 131 TKLYQAPLFNVWS-NGEICAGNAR---LPDRPTVAN-ISA-WEDAFF 171 (228)
T ss_pred CeeccCCcCccCC-CCeEeeCCCc---CCCCcCHHH-HHH-HHHHHh
Confidence 34555 49995 9999997654 3433 5555 544 444444
No 46
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=37.71 E-value=49 Score=24.66 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.7
Q ss_pred CcEEEEEEEeCCCCCCCCCceEEe
Q 031754 46 GGVWRIRVELPDAYPYKSPSIGFV 69 (153)
Q Consensus 46 gg~f~~~i~fp~~yP~~pP~v~f~ 69 (153)
.|.|.|+=.+|--||.++|.|-|.
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEE
Confidence 488999999999999999998876
No 47
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=35.65 E-value=45 Score=20.05 Aligned_cols=18 Identities=17% Similarity=0.444 Sum_probs=10.9
Q ss_pred CCCCCCCCHHHHHHHHHH
Q 031754 91 QTWSPMFDLVNVFEVFLP 108 (153)
Q Consensus 91 ~~W~p~~~i~~il~~~i~ 108 (153)
-+|.|.++|.++|.....
T Consensus 36 LgW~p~~~L~~~i~~~w~ 53 (62)
T PF13950_consen 36 LGWKPKYSLEDMIRDAWN 53 (62)
T ss_dssp C----SSSHHHHHHHHHH
T ss_pred hCCCcCCCHHHHHHHHHH
Confidence 489999999999987333
No 48
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=34.13 E-value=79 Score=24.18 Aligned_cols=69 Identities=17% Similarity=0.324 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHhCCCCCcEEEecCCCceEEEEEEeCCCCCCCCCcEEEEEEEeCCCC----------------------C
Q 031754 3 SPSKRREMDLMKLMMSDYKVEMINDGIQEFYVHFQGPNESPYHGGVWRIRVELPDAY----------------------P 60 (153)
Q Consensus 3 ~~~~Rl~~el~~l~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~y----------------------P 60 (153)
++..|+...+.++..- ..+...-|.+.+....+.-| || |.|.+.|.++= .
T Consensus 9 s~~eR~~e~~~~~k~~------L~~a~~GW~~~yyp~~~~~~-GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~Y~~~~ 80 (235)
T PF14135_consen 9 SPAERINEALAEYKKI------LTSAPNGWKLEYYPKTDQSY-GG-YTFLMKFDDDGKVTMASDFDSASTPSTSSYRLKQ 80 (235)
T ss_pred CHHHHHHHHHHHHHHH------HhcCCCceEEEEECCCCccC-Cc-EEEEEEECCCCeEEEEEccCCCCceeeEEEEEec
Confidence 4678888877654210 01233447777773333334 44 77777776543 1
Q ss_pred CCCCceEEec--CccccceeC
Q 031754 61 YKSPSIGFVN--KIYHPNIDE 79 (153)
Q Consensus 61 ~~pP~v~f~t--~i~Hpnv~~ 79 (153)
..-|.+.|.| +++|--.++
T Consensus 81 ~~gp~LsFdTyN~~iH~~s~p 101 (235)
T PF14135_consen 81 DQGPVLSFDTYNEYIHYFSDP 101 (235)
T ss_pred CCceEEEEEeCCceEEEccCC
Confidence 2237888877 377877765
No 49
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=32.10 E-value=70 Score=23.10 Aligned_cols=24 Identities=38% Similarity=0.790 Sum_probs=21.4
Q ss_pred CcEEEEEEEeCCCCC-----CCCCceEEe
Q 031754 46 GGVWRIRVELPDAYP-----YKSPSIGFV 69 (153)
Q Consensus 46 gg~f~~~i~fp~~yP-----~~pP~v~f~ 69 (153)
.|.|.|+-.+|.-|| ..||.|-|.
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 388999999999999 899998876
No 50
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=31.49 E-value=14 Score=27.64 Aligned_cols=31 Identities=13% Similarity=0.533 Sum_probs=25.0
Q ss_pred CCceEcccccCCCCCCCCHHHHHHHHHHHhhc
Q 031754 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLL 112 (153)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~ 112 (153)
.+..|++++...|+|.+|.+.-+.. ++-++.
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~l-mkKCv~ 165 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDL-MKKCVL 165 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHH-HHHHHH
Confidence 5779999999999999999988755 555443
No 51
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=30.85 E-value=54 Score=28.81 Aligned_cols=29 Identities=31% Similarity=0.833 Sum_probs=22.5
Q ss_pred CCCCCcEEEEEEEeCCCCCC---CCCceEEecC
Q 031754 42 SPYHGGVWRIRVELPDAYPY---KSPSIGFVNK 71 (153)
Q Consensus 42 t~y~gg~f~~~i~fp~~yP~---~pP~v~f~t~ 71 (153)
+||.=|.|.+ +.+|++||+ +-|.++|.|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4555577776 557999999 4799999986
No 52
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=30.46 E-value=60 Score=25.66 Aligned_cols=29 Identities=24% Similarity=-0.001 Sum_probs=25.7
Q ss_pred CccHHHHHHHHhCHHHHHHHHHHHHHHhh
Q 031754 119 PLNGEAAALLMRDRAAYEQRVKGIEHFLY 147 (153)
Q Consensus 119 p~n~~a~~~~~~~~~~f~~~~~~~~~~~~ 147 (153)
-.+.+|+..|..+++.|...+.+.+++..
T Consensus 238 F~s~~aa~~F~~~P~~yi~~v~~~ar~~p 266 (281)
T PF12018_consen 238 FSSREAAYRFAEDPERYIQAVLEKARKNP 266 (281)
T ss_pred eCCHHHHHHHHHCHHHHHHHHHHHHhhCH
Confidence 36899999999999999999999998653
No 53
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=27.69 E-value=20 Score=32.70 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=0.0
Q ss_pred CCCcEEEEEEEeCCCCCCCCCceEEecC
Q 031754 44 YHGGVWRIRVELPDAYPYKSPSIGFVNK 71 (153)
Q Consensus 44 y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 71 (153)
+--.+=.+.|.+|.|||..+|.+.+.+.
T Consensus 711 ~LP~VPPl~l~vP~~YP~~sp~~~~~~~ 738 (799)
T PF09606_consen 711 NLPSVPPLRLTVPADYPRQSPQCSVDRD 738 (799)
T ss_dssp ----------------------------
T ss_pred CCCCCCCeeEeCCCCCCccCCcCcccHH
Confidence 3345556889999999999999987654
No 54
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=26.62 E-value=1.7e+02 Score=18.76 Aligned_cols=29 Identities=24% Similarity=0.192 Sum_probs=21.6
Q ss_pred cHHHHHHHHhCHHHHHHHHHHHHHHhhhc
Q 031754 121 NGEAAALLMRDRAAYEQRVKGIEHFLYHS 149 (153)
Q Consensus 121 n~~a~~~~~~~~~~f~~~~~~~~~~~~~~ 149 (153)
-.+...+.++|+++|+..-++.++....+
T Consensus 6 FD~L~~LA~~dPe~fe~lr~~~~ee~I~~ 34 (83)
T PF11333_consen 6 FDELKELAQNDPEAFEQLRQELIEEMIES 34 (83)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 34567788899999998888877765443
No 55
>smart00340 HALZ homeobox associated leucin zipper.
Probab=26.12 E-value=47 Score=18.65 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhC
Q 031754 4 PSKRREMDLMKL 15 (153)
Q Consensus 4 ~~~Rl~~el~~l 15 (153)
..+||++|+.++
T Consensus 20 eNrRL~ke~~eL 31 (44)
T smart00340 20 ENRRLQKEVQEL 31 (44)
T ss_pred HHHHHHHHHHHH
Confidence 368999998876
No 56
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=25.61 E-value=36 Score=24.68 Aligned_cols=14 Identities=43% Similarity=0.876 Sum_probs=11.1
Q ss_pred CccccceeCCCCceEc
Q 031754 71 KIYHPNIDEMSGSVCL 86 (153)
Q Consensus 71 ~i~Hpnv~~~~G~icl 86 (153)
++|||+.| .|.+|+
T Consensus 50 PiYhP~~D--cGD~VV 63 (165)
T KOG3203|consen 50 PIYHPSTD--CGDHVV 63 (165)
T ss_pred CccCCccC--CCCEEE
Confidence 69999999 576654
No 57
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=25.31 E-value=1.6e+02 Score=24.49 Aligned_cols=33 Identities=21% Similarity=0.476 Sum_probs=24.0
Q ss_pred eeCCCCceEccccc---CCCCCCC--CHHHHHHHHHHHh
Q 031754 77 IDEMSGSVCLDVIN---QTWSPMF--DLVNVFEVFLPQL 110 (153)
Q Consensus 77 v~~~~G~icl~~l~---~~W~p~~--~i~~il~~~i~~l 110 (153)
|.+.+|.||..+=- +...|.. +|.+++.. +.++
T Consensus 332 VHP~Tg~VcVPidv~~~d~Fdp~~vPti~~l~eE-l~~~ 369 (412)
T KOG2851|consen 332 VHPKTGRVCVPIDVSKVDEFDPEKVPTISDLLEE-LESL 369 (412)
T ss_pred ccCCCCceEeecchhhccccCcccCCcHHHHHHH-Hhhc
Confidence 44459999987642 5666654 88899888 7777
No 58
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=24.26 E-value=90 Score=25.34 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=21.3
Q ss_pred cEEEEEEEeCCCCCCCCCceEEecC
Q 031754 47 GVWRIRVELPDAYPYKSPSIGFVNK 71 (153)
Q Consensus 47 g~f~~~i~fp~~yP~~pP~v~f~t~ 71 (153)
-.+.+.+..++.||...|+|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4567888889999999999998864
No 59
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=23.74 E-value=1.3e+02 Score=17.96 Aligned_cols=21 Identities=10% Similarity=0.192 Sum_probs=18.4
Q ss_pred ccHHHHHHHHhCHHHHHHHHH
Q 031754 120 LNGEAAALLMRDRAAYEQRVK 140 (153)
Q Consensus 120 ~n~~a~~~~~~~~~~f~~~~~ 140 (153)
.|++.+++...|+++|.+...
T Consensus 34 ~nP~l~q~I~~n~e~Fl~ll~ 54 (59)
T PF09280_consen 34 SNPQLLQLIQQNPEEFLRLLN 54 (59)
T ss_dssp CSHHHHHHHHHTHHHHHHHHH
T ss_pred cCHHHHHHHHHCHHHHHHHHc
Confidence 589999999999999988754
No 60
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=23.56 E-value=81 Score=22.19 Aligned_cols=30 Identities=17% Similarity=0.239 Sum_probs=19.6
Q ss_pred CCCceEEEEEEeCCCCCCCC-CcEEEEEEEe
Q 031754 26 NDGIQEFYVHFQGPNESPYH-GGVWRIRVEL 55 (153)
Q Consensus 26 ~~~~~~w~~~i~gp~~t~y~-gg~f~~~i~f 55 (153)
..|...|.|++.|++||+.. +..|-+.+.|
T Consensus 44 PGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 44 PGDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred CCCCcceEEEEECCCCcceeccccchheeeH
Confidence 35677888999999988765 2344443333
No 61
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=23.34 E-value=1.5e+02 Score=21.19 Aligned_cols=52 Identities=17% Similarity=0.373 Sum_probs=34.9
Q ss_pred CCcEEEecCCCceEEEEEEeCCCC-CCCCCcEEEEEEEeCCCCCCCCCceEEecC
Q 031754 18 SDYKVEMINDGIQEFYVHFQGPNE-SPYHGGVWRIRVELPDAYPYKSPSIGFVNK 71 (153)
Q Consensus 18 ~~~~v~~~~~~~~~w~~~i~gp~~-t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 71 (153)
.|..+.--+.|.... ....|.- +-|.|-.=.+.+.-...||--.|++.|.|+
T Consensus 85 ~g~iLA~ye~n~rDf--LfP~p~~~~~~~g~~revLM~~t~~FpGIaPklEfST~ 137 (140)
T PF14909_consen 85 AGEILAYYEENTRDF--LFPEPKLTPSYPGVDREVLMKRTSGFPGIAPKLEFSTK 137 (140)
T ss_pred CCcEEEEEeccccce--EcCCCCCCCCCCCCCEEEEeeccCCCCCCCceEEEEEE
Confidence 344444444554443 3444443 346677778888899999999999999985
No 62
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=22.60 E-value=43 Score=22.82 Aligned_cols=21 Identities=19% Similarity=0.506 Sum_probs=16.4
Q ss_pred CCceEcccccCCCCCCCCHHH
Q 031754 81 SGSVCLDVINQTWSPMFDLVN 101 (153)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~ 101 (153)
+|.+|.-.+...|+|.+++.-
T Consensus 50 Gg~~CC~~~p~~W~pg~tv~V 70 (118)
T PF11745_consen 50 GGFTCCVSLPRKWRPGLTVKV 70 (118)
T ss_pred CceEEEEEcCCCCCCCCEEEE
Confidence 556788888899999987653
No 63
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=21.75 E-value=1.3e+02 Score=22.52 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=19.5
Q ss_pred CcEEEEEEEeCCCCCC-----CCCceEEe
Q 031754 46 GGVWRIRVELPDAYPY-----KSPSIGFV 69 (153)
Q Consensus 46 gg~f~~~i~fp~~yP~-----~pP~v~f~ 69 (153)
.|.|.|+-..|-.||. .||.|-|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3889999999999998 67776554
No 64
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=20.78 E-value=1.7e+02 Score=25.54 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=22.6
Q ss_pred cHHHHHHHHhCHHHHHHHHHHHHHHhh
Q 031754 121 NGEAAALLMRDRAAYEQRVKGIEHFLY 147 (153)
Q Consensus 121 n~~a~~~~~~~~~~f~~~~~~~~~~~~ 147 (153)
-.|+.++.++|++.|.++|++..++..
T Consensus 271 ~eea~~l~~~dp~~~~~~v~~Sl~rhv 297 (546)
T PF01175_consen 271 FEEANELRAEDPEEFKERVQESLARHV 297 (546)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 456788889999999999999888753
No 65
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=20.55 E-value=2.4e+02 Score=17.91 Aligned_cols=33 Identities=24% Similarity=0.192 Sum_probs=23.7
Q ss_pred CCCccHHHHHHHHhCHHHHHHHHHHHHHHhhhcc
Q 031754 117 SDPLNGEAAALLMRDRAAYEQRVKGIEHFLYHSL 150 (153)
Q Consensus 117 ~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~~~~~ 150 (153)
.+|-+.+|...|..-.+...+..+++.+ .|+.+
T Consensus 24 THP~d~~Al~~y~~~~~~~~~l~~~Ye~-~yGPL 56 (78)
T PF12652_consen 24 THPDDQEALEYYNEYSKQRKQLKKEYEK-RYGPL 56 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHH-HhCCC
Confidence 5688899999987777776666666666 55544
Done!