Your job contains 1 sequence.
>031755
MWAAAAATVSYPQPMFANSLTNRENPCFRTFNLRASLSNYPLASRIMVRNLPFTTHEHTL
QKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA
KPGKDRFGGYPRTSGPPKQQPLSEQDEVADCWY
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 031755
(153 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2119797 - symbol:AT4G20030 species:3702 "Arabi... 463 6.4e-44 1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"... 169 5.7e-15 2
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi... 183 3.0e-14 1
TAIR|locus:2088756 - symbol:AT3G20930 species:3702 "Arabi... 188 3.2e-14 1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 181 4.9e-14 1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi... 181 4.9e-14 1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 180 6.2e-14 1
TAIR|locus:2206850 - symbol:AT1G73530 species:3702 "Arabi... 180 6.2e-14 1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 177 1.3e-13 1
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"... 173 3.4e-13 1
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"... 173 3.4e-13 1
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"... 173 3.4e-13 1
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi... 173 3.4e-13 1
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi... 172 4.4e-13 1
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin... 172 4.4e-13 1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 169 9.1e-13 1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"... 169 9.1e-13 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 169 9.1e-13 1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 169 9.1e-13 1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 169 9.1e-13 1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi... 169 9.1e-13 1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi... 169 9.1e-13 1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi... 169 9.1e-13 1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"... 169 9.1e-13 1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi... 169 9.1e-13 1
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi... 168 1.2e-12 1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding... 168 1.2e-12 1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro... 168 1.2e-12 1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot... 167 1.5e-12 1
TAIR|locus:2122990 - symbol:AT4G19610 species:3702 "Arabi... 178 1.7e-12 1
UNIPROTKB|D6W5Y5 - symbol:CIRBP "Cold-inducible RNA-bindi... 169 1.8e-12 1
ZFIN|ZDB-GENE-040426-2706 - symbol:srsf2a "serine/arginin... 166 1.9e-12 1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 163 3.9e-12 1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 162 5.0e-12 1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 162 5.0e-12 1
UNIPROTKB|B4DN89 - symbol:SRSF2 "Serine/arginine-rich-spl... 161 6.4e-12 1
TAIR|locus:2179624 - symbol:AT5G19030 species:3702 "Arabi... 161 6.4e-12 1
DICTYBASE|DDB_G0284663 - symbol:mrd1 "RNA-binding region ... 173 6.8e-12 1
UNIPROTKB|J3QL05 - symbol:SRSF2 "Serine/arginine-rich-spl... 159 1.0e-11 1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi... 159 1.0e-11 1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 159 1.0e-11 1
FB|FBgn0010263 - symbol:Rbp9 "RNA-binding protein 9" spec... 166 1.2e-11 1
UNIPROTKB|P30352 - symbol:SRSF2 "Serine/arginine-rich spl... 158 1.3e-11 1
UNIPROTKB|Q3MHR5 - symbol:SRSF2 "Serine/arginine-rich spl... 158 1.3e-11 1
UNIPROTKB|E2RDB2 - symbol:SRSF2 "Uncharacterized protein"... 158 1.3e-11 1
UNIPROTKB|J3KP15 - symbol:SRSF2 "Serine/arginine-rich-spl... 158 1.3e-11 1
UNIPROTKB|Q01130 - symbol:SRSF2 "Serine/arginine-rich spl... 158 1.3e-11 1
UNIPROTKB|I3LQ36 - symbol:I3LQ36 "Uncharacterized protein... 158 1.3e-11 1
UNIPROTKB|Q06A98 - symbol:SRSF2 "Serine/arginine-rich spl... 158 1.3e-11 1
MGI|MGI:98284 - symbol:Srsf2 "serine/arginine-rich splici... 158 1.3e-11 1
RGD|1359422 - symbol:Srsf2 "serine/arginine-rich splicing... 158 1.3e-11 1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p... 158 1.3e-11 1
UNIPROTKB|Q6PDU1 - symbol:Srsf2 "Serine/arginine-rich spl... 158 1.3e-11 1
TAIR|locus:2075860 - symbol:U11/U12-31K "U11/U12-31K" spe... 159 1.4e-11 1
UNIPROTKB|E2R228 - symbol:E2R228 "Uncharacterized protein... 157 1.7e-11 1
UNIPROTKB|J9NZ20 - symbol:ZCRB1 "Uncharacterized protein"... 157 1.7e-11 1
MGI|MGI:1914447 - symbol:Zcrb1 "zinc finger CCHC-type and... 157 1.7e-11 1
RGD|1309851 - symbol:Zcrb1 "zinc finger CCHC-type and RNA... 157 1.7e-11 1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"... 157 1.7e-11 1
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ... 156 2.2e-11 1
TAIR|locus:2159401 - symbol:GR-RBP3 "glycine-rich RNA-bin... 142 3.2e-11 2
UNIPROTKB|Q96E39 - symbol:RBMXL1 "RNA binding motif prote... 160 4.2e-11 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 152 5.8e-11 1
TAIR|locus:2019622 - symbol:GR-RBP5 "AT1G74230" species:3... 155 6.5e-11 1
UNIPROTKB|Q8TBF4 - symbol:ZCRB1 "Zinc finger CCHC-type an... 151 7.4e-11 1
UNIPROTKB|K7GNR2 - symbol:RBMX "Uncharacterized protein" ... 151 7.4e-11 1
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin... 154 8.5e-11 1
UNIPROTKB|H0Y6E7 - symbol:RBMX "RNA-binding motif protein... 154 8.8e-11 1
UNIPROTKB|H3BT71 - symbol:RBMX "RNA-binding motif protein... 154 9.2e-11 1
WB|WBGene00001368 - symbol:exc-7 species:6239 "Caenorhabd... 158 9.6e-11 1
UNIPROTKB|K7GRX3 - symbol:RBMX "Uncharacterized protein" ... 154 1.0e-10 1
RGD|1565256 - symbol:Rbmx "RNA binding motif protein, X-l... 156 1.2e-10 1
MGI|MGI:1343044 - symbol:Rbmx "RNA binding motif protein,... 156 1.2e-10 1
TAIR|locus:2172144 - symbol:AT5G54580 species:3702 "Arabi... 149 1.2e-10 1
ZFIN|ZDB-GENE-030131-2420 - symbol:srsf2b "serine/arginin... 149 1.2e-10 1
UNIPROTKB|F1P1R2 - symbol:RBM19 "Uncharacterized protein"... 159 1.3e-10 1
UNIPROTKB|I3LN96 - symbol:SNRNP35 "Uncharacterized protei... 128 1.4e-10 2
UNIPROTKB|O75526 - symbol:RBMXL2 "RNA-binding motif prote... 155 1.5e-10 1
UNIPROTKB|Q56JZ7 - symbol:ZCRB1 "Zinc finger CCHC-type an... 148 1.5e-10 1
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi... 148 1.5e-10 1
UNIPROTKB|Q1LZH0 - symbol:SNRNP35 "U11/U12 small nuclear ... 127 1.8e-10 2
UNIPROTKB|F1NZD3 - symbol:RBMX "Uncharacterized protein" ... 154 1.9e-10 1
UNIPROTKB|F1P6U2 - symbol:SNRNP35 "Uncharacterized protei... 126 1.9e-10 2
UNIPROTKB|F1RQ90 - symbol:RBMX "Uncharacterized protein" ... 154 1.9e-10 1
UNIPROTKB|D3JUI8 - symbol:RBMX "RNA-binding motif protein... 154 1.9e-10 1
UNIPROTKB|P38159 - symbol:RBMX "RNA-binding motif protein... 154 1.9e-10 1
UNIPROTKB|A5A6M3 - symbol:RBMX "RNA-binding motif protein... 154 1.9e-10 1
UNIPROTKB|Q4R7F0 - symbol:RBMX "RNA-binding motif protein... 154 1.9e-10 1
UNIPROTKB|E2R068 - symbol:RBMX "Uncharacterized protein" ... 154 1.9e-10 1
TAIR|locus:2119505 - symbol:AT4G13860 species:3702 "Arabi... 147 2.0e-10 1
UNIPROTKB|F1NEC5 - symbol:RBM19 "Uncharacterized protein"... 159 2.3e-10 1
TAIR|locus:4515103541 - symbol:AT5G08695 species:3702 "Ar... 157 2.4e-10 1
MGI|MGI:1343045 - symbol:Rbmxl1 "RNA binding motif protei... 153 2.4e-10 1
UNIPROTKB|E1BTK3 - symbol:ZCRB1 "Uncharacterized protein"... 146 2.5e-10 1
TAIR|locus:2039590 - symbol:AT2G27330 species:3702 "Arabi... 146 2.5e-10 1
TAIR|locus:2049816 - symbol:AT2G37510 species:3702 "Arabi... 146 2.5e-10 1
UNIPROTKB|Q83D11 - symbol:CBU_0935 "RNA binding protein" ... 145 3.2e-10 1
TIGR_CMR|CBU_0935 - symbol:CBU_0935 "RNA-binding protein"... 145 3.2e-10 1
POMBASE|SPBC887.05c - symbol:cwf29 "RNA-binding protein C... 145 3.2e-10 1
ASPGD|ASPL0000061066 - symbol:AN0421 species:162425 "Emer... 156 4.0e-10 1
WARNING: Descriptions of 1050 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2119797 [details] [associations]
symbol:AT4G20030 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT025729
EMBL:AK176834 IPI:IPI00538556 RefSeq:NP_567594.1 UniGene:At.26265
UniGene:At.71246 ProteinModelPortal:Q67XI5 SMR:Q67XI5 STRING:Q67XI5
EnsemblPlants:AT4G20030.1 GeneID:827748 KEGG:ath:AT4G20030
TAIR:At4g20030 HOGENOM:HOG000005780 InParanoid:Q67XI5 OMA:DEVADCW
PhylomeDB:Q67XI5 ProtClustDB:CLSN2689522 Genevestigator:Q67XI5
Uniprot:Q67XI5
Length = 152
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 95/157 (60%), Positives = 120/157 (76%)
Query: 1 MWAAAAATVSYPQPMFANS-LTNRENPCFRTFNLRASLSNYPLASRIMVRNLPFTTHEHT 59
MW+A T+S+P + ++S L N N R ++ASL NYPLAS+IMVRNLPF+T E
Sbjct: 1 MWSA---TLSFPSFVASSSSLPNYRN--LRFPKIKASLFNYPLASKIMVRNLPFSTSEDF 55
Query: 60 LQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119
L++EFSAFGE+AEVKL+KDE K+SKGYAFIQ+TSQDDA LA+E+MD + +GR+IY+DI
Sbjct: 56 LKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDI 115
Query: 120 AKPGKDRFGGYPRTSGPPKQQPLSEQ---DEVADCWY 153
AKPGK F G PRTSGPP++ E+ DEVADCWY
Sbjct: 116 AKPGKRDFQGLPRTSGPPEKSDEPEEAANDEVADCWY 152
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 169 (64.5 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
Identities = 35/87 (40%), Positives = 59/87 (67%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T+E +L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGY 130
M+ K++DGR I VD A K +R GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGY 93
Score = 34 (17.0 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 128 GGYPRTSG 135
GGY R+SG
Sbjct: 149 GGYDRSSG 156
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 38/98 (38%), Positives = 58/98 (59%)
Query: 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLA 101
+AS++ + L F T E L + FS G+V E ++V D ++ +SKG+ F+ + S D+A A
Sbjct: 32 VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91
Query: 102 LESMDHKNLDGRLIYVDIAKPGKDRFGG--YPRTSGPP 137
L + + L+GR I+VD AK + GG YP GPP
Sbjct: 92 LMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPP 129
>TAIR|locus:2088756 [details] [associations]
symbol:AT3G20930 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0000023 "maltose
metabolic process" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:Q9V535 eggNOG:COG0724 EMBL:AY099828
EMBL:AY084565 EMBL:BT002195 IPI:IPI00537313 RefSeq:NP_566672.1
UniGene:At.43817 ProteinModelPortal:Q8L440 SMR:Q8L440 PRIDE:Q8L440
EnsemblPlants:AT3G20930.1 GeneID:821642 KEGG:ath:AT3G20930
TAIR:At3g20930 InParanoid:Q8L440 OMA:KAQMVDH PhylomeDB:Q8L440
ProtClustDB:CLSN2688611 ArrayExpress:Q8L440 Genevestigator:Q8L440
Uniprot:Q8L440
Length = 374
Score = 188 (71.2 bits), Expect = 3.2e-14, P = 3.2e-14
Identities = 35/77 (45%), Positives = 56/77 (72%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L F T E TL+ F FGE+ EVK++ D+I+K+SKGYAF++YT+++ A AL+
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 105 MDHKNLDGRLIYVDIAK 121
M+ K ++G +I VD+AK
Sbjct: 343 MNGKIINGWMIVVDVAK 359
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 37/87 (42%), Positives = 59/87 (67%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L F T+E +L++ FS +G+++EV +VKD TK+S+G+ F+ + + DDA A+ +
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGY 130
M+ K +DGR I VD A K DR GGY
Sbjct: 66 MNGKAVDGRQIRVDQAGKSSGDRRGGY 92
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 33/84 (39%), Positives = 60/84 (71%)
Query: 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLA 101
+++++ V L T + +L++ FS FG++ E +L++D T++ KG+ FI + S+DDA A
Sbjct: 5 ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64
Query: 102 LESMDHKNLDGRLIYVDIAKPGKD 125
L+S+D K +DGRLI+V++AK ++
Sbjct: 65 LKSLDGKIVDGRLIFVEVAKNAEE 88
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 38/87 (43%), Positives = 59/87 (67%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T E +L++ FS +G+VAEV +VKD +K+S+G+ F+ + + +DA A+ +
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGY 130
M+ K++DGR I VD A K DR GGY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSNDRRGGY 93
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 38/107 (35%), Positives = 64/107 (59%)
Query: 36 SLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQ 95
S S+ P +++ V L F T E TL+ F FG + + +V D++ + KG+AF++Y ++
Sbjct: 70 SSSSGP-KTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETE 128
Query: 96 DDALLALESMDHKNLDGRLIYVDIAKPGKDRFGGYPRTSGP-PKQQP 141
++A+ A++ M K LDGR+I+V+ AK D PR P P+ +P
Sbjct: 129 EEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPKPQSKP 175
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 40/99 (40%), Positives = 61/99 (61%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T E L+ FS+FG ++EV +VKD T++S+G+ FI +T+ + A A+ +
Sbjct: 7 KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDR----FGGYPRTSGPPK 138
M+ ++LDGR I VD A K + FGGY R G P+
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGSRGGAFGGYERGRGYPR 105
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 35/87 (40%), Positives = 61/87 (70%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
+++V L F T+E +L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGY 130
M+ K++DGR I VD A K ++R GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSENRSRGY 93
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 35/87 (40%), Positives = 61/87 (70%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
+++V L F T+E +L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGY 130
M+ K++DGR I VD A K ++R GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSENRSRGY 93
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 35/87 (40%), Positives = 61/87 (70%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
+++V L F T+E +L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGY 130
M+ K++DGR I VD A K ++R GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSENRSRGY 93
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 37/87 (42%), Positives = 54/87 (62%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T E L+ FS +G++ EV +VKD TK+S+G+ F+ + + +DA A+
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGY 130
M+ K +DGR I VD A K DR GGY
Sbjct: 67 MNGKTVDGRQIRVDQAGKSSNDRRGGY 93
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 34/85 (40%), Positives = 58/85 (68%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T+E +L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIAKPGKDRFGG 129
M+ K++DGR I VD A G +GG
Sbjct: 67 MNGKSVDGRQIRVDQAGGGDRGYGG 91
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 35/87 (40%), Positives = 58/87 (66%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L F T+E L++ F+ +G ++EV +VKD TK+S+G+ F+ + + DDA A+ +
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGY 130
M+ K++DGR I VD A K +R GGY
Sbjct: 66 MNGKSVDGRQIRVDQAGKSSGERRGGY 92
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/87 (40%), Positives = 59/87 (67%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T+E +L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGY 130
M+ K++DGR I VD A K +R GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGY 93
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/87 (40%), Positives = 59/87 (67%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T+E +L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGY 130
M+ K++DGR I VD A K +R GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGY 93
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/87 (40%), Positives = 59/87 (67%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T+E +L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGY 130
M+ K++DGR I VD A K +R GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGY 93
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/87 (40%), Positives = 59/87 (67%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T+E +L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGY 130
M+ K++DGR I VD A K +R GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGY 93
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/87 (40%), Positives = 59/87 (67%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T+E +L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGY 130
M+ K++DGR I VD A K +R GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGY 93
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/87 (40%), Positives = 59/87 (67%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T+E +L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGY 130
M+ K++DGR I VD A K +R GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGY 93
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/87 (40%), Positives = 59/87 (67%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T+E +L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGY 130
M+ K++DGR I VD A K +R GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGY 93
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/87 (40%), Positives = 59/87 (67%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T+E +L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGY 130
M+ K++DGR I VD A K +R GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGY 93
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/87 (40%), Positives = 59/87 (67%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T+E +L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGY 130
M+ K++DGR I VD A K +R GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGY 93
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/87 (40%), Positives = 59/87 (67%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T+E +L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGY 130
M+ K++DGR I VD A K +R GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGY 93
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 35/87 (40%), Positives = 58/87 (66%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T+E L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGY 130
M+ K++DGR I VD A K +R GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGY 93
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 35/87 (40%), Positives = 58/87 (66%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T+E L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGY 130
M+ K++DGR I VD A K +R GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGY 93
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 35/87 (40%), Positives = 58/87 (66%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T+E L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGY 130
M+ K++DGR I VD A K +R GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGY 93
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 35/86 (40%), Positives = 56/86 (65%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T E L+ FS+FG ++EV +VKD T++S+G+ FI +T+ + A +A+ +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGG 129
M+ ++LDGR I VD A K + GG
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGG 92
>TAIR|locus:2122990 [details] [associations]
symbol:AT4G19610 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14787
OMA:VFREKNV IPI:IPI00517416 RefSeq:NP_193696.3 UniGene:At.50354
ProteinModelPortal:F4JT92 SMR:F4JT92 PRIDE:F4JT92
EnsemblPlants:AT4G19610.1 GeneID:827703 KEGG:ath:AT4G19610
Uniprot:F4JT92
Length = 816
Score = 178 (67.7 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 41/108 (37%), Positives = 64/108 (59%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
R+ VRNLP+T E L + FS FG+++EV LV D+ TK+S+G A+I Y + A A+E
Sbjct: 295 RLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEE 354
Query: 105 MDHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPK--QQPLSEQDEVAD 150
+D+ + GRL+++ AK + TS PK +Q EQ + ++
Sbjct: 355 LDNSSFQGRLLHILPAKHRETSDKQVNDTSNLPKTFKQKREEQRKASE 402
Score = 111 (44.1 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
SRI V+NLP E L+ FS GE+ + KL++ KS+ + FI + S +A A++
Sbjct: 2 SRICVKNLPKHVKEDQLRDHFSQKGEITDAKLMRSN-DGKSRQFGFIGFRSAQEAQQAIK 60
Query: 104 SMDHKNLDGRLIYVDIA-KPGKD 125
++ L LI V+IA K G +
Sbjct: 61 YFNNTYLGTSLIIVEIAHKVGDE 83
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 169 (64.5 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 35/87 (40%), Positives = 59/87 (67%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T+E +L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGY 130
M+ K++DGR I VD A K +R GY
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGY 93
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 33/94 (35%), Positives = 57/94 (60%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V NL + T TL++ F +G V +V + +D TK+S+G+AF+++ + DA A+++M
Sbjct: 16 LKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 106 DHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQ 139
D LDGR + V +A+ G+ Y R PP++
Sbjct: 76 DGALLDGRELRVQMARYGRPPDAHYSRRGAPPRR 109
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T E L+ FS+FG ++EV +VKD T++S+G+ FI +T+ + A A+ +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGG 129
M+ ++LDGR I VD A K + GG
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGG 92
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T E L+ FS+FG ++EV +VKD T++S+G+ FI +T+ + A A+ +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGG 129
M+ ++LDGR I VD A K + GG
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGSRGG 92
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T E L+ FS+FG ++EV +VKD T++S+G+ FI +T+ + A A+ +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGG 129
M+ ++LDGR I VD A K + GG
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGG 92
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 34/96 (35%), Positives = 58/96 (60%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V NL + T TL++ F +G V +V + +D TK+S+G+AF+++ + DA A+++M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 106 DHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQQP 141
D LDGR + V +A+ G+ + R GPP + P
Sbjct: 76 DGAVLDGRELRVQMARYGRPPDSHHSRR-GPPPRSP 110
>TAIR|locus:2179624 [details] [associations]
symbol:AT5G19030 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00544212 RefSeq:NP_197404.2
UniGene:At.31343 ProteinModelPortal:F4JZK9 SMR:F4JZK9
EnsemblPlants:AT5G19030.1 GeneID:832022 KEGG:ath:AT5G19030
OMA:RTISCVA PhylomeDB:F4JZK9 Uniprot:F4JZK9
Length = 172
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 34/90 (37%), Positives = 55/90 (61%)
Query: 38 SNYPLA-SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQD 96
S+ P + S + V+ + E L+K FS FG+V VK++ +E T++S GY ++ + S++
Sbjct: 70 SSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKE 129
Query: 97 DALLALESMDHKNLDGRLIYVDIAKPGKDR 126
DA A+E+M+ K DGR I V +PG R
Sbjct: 130 DAQSAVEAMNGKFFDGRFILVKFGQPGLSR 159
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 173 (66.0 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 39/82 (47%), Positives = 53/82 (64%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102
+ RI VRNL ++T E L+K FS FG+++E+ + D +KKSKG AFI Y ++A+ AL
Sbjct: 360 SGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQAL 419
Query: 103 ESMDHKNLDGRLIYVDIAKPGK 124
MD K GRLI+V PGK
Sbjct: 420 NDMDGKVFQGRLIHV---LPGK 438
Score = 122 (48.0 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 24/87 (27%), Positives = 55/87 (63%)
Query: 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDA 98
N P +S+I+++NLPF + ++K F+A+GE+ V++ K +G+ F+++ ++++A
Sbjct: 791 NKP-SSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKP-NGGHRGFGFVEFLTEEEA 848
Query: 99 LLALESMDHKNLDGRLIYVDIAKPGKD 125
A+E++ + + GR + + A+ K+
Sbjct: 849 KNAMEALGNSHFYGRHLVLQYAEQDKN 875
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 33/98 (33%), Positives = 58/98 (59%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V NL + T TL++ F +G V +V + +D TK+S+G+AF+++ + DA A+++M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 106 DHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQQPLS 143
D LDGR + V +A+ G+ + R PP+ + S
Sbjct: 76 DGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRSRSRS 113
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 30/74 (40%), Positives = 53/74 (71%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T+E +L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVD 118
M+ K++DGR I VD
Sbjct: 67 MNGKSVDGRQIRVD 80
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 29/86 (33%), Positives = 55/86 (63%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L + T E +L++ FS +G +A+V +++D T +S+G+ F+ + + +DA A+ +
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83
Query: 105 MDHKNLDGRLIYVDIAKPGKDRFGGY 130
M+ K +DGR+I VD A R GG+
Sbjct: 84 MNGKQVDGRMIRVDEAGKSGGRSGGF 109
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 166 (63.5 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 41/132 (31%), Positives = 67/132 (50%)
Query: 18 NSLTNRENPCFRTFNLRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVK 77
N+ TN N T N + P + ++V LP T + ++ F +FGEV KL++
Sbjct: 85 NNNTNNNNNNNATANNNNNNEPDP-KTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIR 143
Query: 78 DEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKDRF-GGYPRTSGP 136
D++T +S GY F+ Y Q+DA A+ +++ L + I V IA+P + G SG
Sbjct: 144 DKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGL 203
Query: 137 PKQQPLSEQDEV 148
PK S+ + +
Sbjct: 204 PKNMTQSDLESL 215
Score = 147 (56.8 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 39/127 (30%), Positives = 66/127 (51%)
Query: 3 AAAAATVSYPQPMFANSLTNRENPCFRTFNLRASLSNYPLASR---IMVRNLPFTTHEHT 59
AAAAA +P +S+ +R +P + +AS I V NL T E+
Sbjct: 317 AAAAAAAIHPNAGRYSSVISRYSPLTSDLITNGMIQGNTIASSGWCIFVYNLAPDTEENV 376
Query: 60 LQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119
L + F FG V VK+++D + K KG+ F+ T+ ++A+LA++S++ L R++ V
Sbjct: 377 LWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSLNGYTLGNRVLQVSF 436
Query: 120 AKPGKDR 126
K K++
Sbjct: 437 -KTNKNK 442
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 32/94 (34%), Positives = 57/94 (60%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V NL + T TL++ F +G V +V + +D TK+S+G+AF+++ + DA A+++M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 106 DHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQ 139
D LDGR + V +A+ G+ + R PP++
Sbjct: 76 DGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRR 109
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 32/94 (34%), Positives = 57/94 (60%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V NL + T TL++ F +G V +V + +D TK+S+G+AF+++ + DA A+++M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 106 DHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQ 139
D LDGR + V +A+ G+ + R PP++
Sbjct: 76 DGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRR 109
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 32/94 (34%), Positives = 57/94 (60%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V NL + T TL++ F +G V +V + +D TK+S+G+AF+++ + DA A+++M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 106 DHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQ 139
D LDGR + V +A+ G+ + R PP++
Sbjct: 76 DGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRR 109
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 32/94 (34%), Positives = 57/94 (60%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V NL + T TL++ F +G V +V + +D TK+S+G+AF+++ + DA A+++M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 106 DHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQ 139
D LDGR + V +A+ G+ + R PP++
Sbjct: 76 DGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRR 109
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 32/94 (34%), Positives = 57/94 (60%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V NL + T TL++ F +G V +V + +D TK+S+G+AF+++ + DA A+++M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 106 DHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQ 139
D LDGR + V +A+ G+ + R PP++
Sbjct: 76 DGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRR 109
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 34/86 (39%), Positives = 55/86 (63%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T+E L+ FS+FG + EV +VKD T++S+G+ FI +T+ + A A+ +
Sbjct: 7 KLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGG 129
+ ++LDGR I+VD A K + GG
Sbjct: 67 TNGESLDGRQIHVDHAGKSARGTRGG 92
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 32/94 (34%), Positives = 57/94 (60%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V NL + T TL++ F +G V +V + +D TK+S+G+AF+++ + DA A+++M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 106 DHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQ 139
D LDGR + V +A+ G+ + R PP++
Sbjct: 76 DGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRR 109
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 32/94 (34%), Positives = 57/94 (60%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V NL + T TL++ F +G V +V + +D TK+S+G+AF+++ + DA A+++M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 106 DHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQ 139
D LDGR + V +A+ G+ + R PP++
Sbjct: 76 DGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRR 109
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 32/94 (34%), Positives = 57/94 (60%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V NL + T TL++ F +G V +V + +D TK+S+G+AF+++ + DA A+++M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 106 DHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQ 139
D LDGR + V +A+ G+ + R PP++
Sbjct: 76 DGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRR 109
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 34/86 (39%), Positives = 54/86 (62%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T E L+ FS+FG ++EV +VKD T++S+G+ FI +T+ + A + +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGG 129
M+ ++LDGR I VD A K + GG
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGG 92
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 32/94 (34%), Positives = 57/94 (60%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V NL + T TL++ F +G V +V + +D TK+S+G+AF+++ + DA A+++M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 106 DHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQ 139
D LDGR + V +A+ G+ + R PP++
Sbjct: 76 DGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRR 109
>TAIR|locus:2075860 [details] [associations]
symbol:U11/U12-31K "U11/U12-31K" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0051302
"regulation of cell division" evidence=IMP] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 EMBL:CP002686 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011560
GO:GO:0030529 Gene3D:4.10.60.10 GO:GO:0000398 GO:GO:0032502
GO:GO:0051302 HSSP:O08583 KO:K13154 OMA:YRYSSVA EMBL:BT015938
EMBL:BT021922 IPI:IPI00529628 RefSeq:NP_187651.1 UniGene:At.39936
ProteinModelPortal:Q9CAE4 SMR:Q9CAE4 STRING:Q9CAE4
EnsemblPlants:AT3G10400.1 GeneID:820203 KEGG:ath:AT3G10400
TAIR:At3g10400 InParanoid:Q9CAE4 PhylomeDB:Q9CAE4
ProtClustDB:CLSN2684009 Genevestigator:Q9CAE4 Uniprot:Q9CAE4
Length = 261
Score = 159 (61.0 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 35/80 (43%), Positives = 49/80 (61%)
Query: 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALL 100
P S + V NL F+ + FS FG+VA V ++KD T++S+G AF+ Y S++DA
Sbjct: 54 PSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAK 113
Query: 101 ALESMDHKNLDGRLIYVDIA 120
A SMD K L+GR + V IA
Sbjct: 114 AARSMDAKILNGRKLTVSIA 133
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 32/75 (42%), Positives = 50/75 (66%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ + L F T+E L+ FS+FG ++EV +VKD T++S+G+ FI +T+ + A A+ M
Sbjct: 8 LFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPM 67
Query: 106 DHKNLDGRLIYVDIA 120
+ K+LDGR I VD A
Sbjct: 68 NGKSLDGRQIRVDHA 82
>UNIPROTKB|J9NZ20 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AAEX03015129
RefSeq:XP_534835.1 ProteinModelPortal:J9NZ20
Ensembl:ENSCAFT00000049381 GeneID:477640 KEGG:cfa:477640
Uniprot:J9NZ20
Length = 217
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALL 100
P S + V NLPF+ + L + FS +G+V +V ++KD+ T+KSKG AFI + +D AL
Sbjct: 7 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALN 66
Query: 101 ALESMDHKNLDGRLIYVDIA 120
++++K L GR+I IA
Sbjct: 67 CTRAINNKQLFGRVIKASIA 86
>MGI|MGI:1914447 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
MGI:MGI:1914447 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:AB095989 EMBL:AK012852 EMBL:AK170136
EMBL:BC058368 IPI:IPI00112291 IPI:IPI00798500 RefSeq:NP_080301.1
UniGene:Mm.293181 ProteinModelPortal:Q9CZ96 SMR:Q9CZ96
STRING:Q9CZ96 PhosphoSite:Q9CZ96 PRIDE:Q9CZ96
Ensembl:ENSMUST00000076070 Ensembl:ENSMUST00000162160 GeneID:67197
KEGG:mmu:67197 UCSC:uc007xiu.1 UCSC:uc007xiv.1 InParanoid:Q9CZ96
ChiTaRS:ZCRB1 NextBio:323848 Bgee:Q9CZ96 CleanEx:MM_ZCRB1
Genevestigator:Q9CZ96 GermOnline:ENSMUSG00000022635 Uniprot:Q9CZ96
Length = 217
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALL 100
P S + V NLPF+ + L + FS +G+V +V ++KD+ T+KSKG AFI + +D AL
Sbjct: 7 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALN 66
Query: 101 ALESMDHKNLDGRLIYVDIA 120
++++K L GR+I IA
Sbjct: 67 CTRAINNKQLFGRVIKASIA 86
>RGD|1309851 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
RGD:1309851 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:P62995 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:BC099747 IPI:IPI00211761
RefSeq:NP_001030112.1 UniGene:Rn.136969 ProteinModelPortal:Q499V6
SMR:Q499V6 STRING:Q499V6 Ensembl:ENSRNOT00000006780 GeneID:362990
KEGG:rno:362990 InParanoid:Q499V6 NextBio:682050
Genevestigator:Q499V6 GermOnline:ENSRNOG00000004996 Uniprot:Q499V6
Length = 217
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALL 100
P S + V NLPF+ + L + FS +G+V +V ++KD+ T+KSKG AFI + +D AL
Sbjct: 7 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALN 66
Query: 101 ALESMDHKNLDGRLIYVDIA 120
++++K L GR+I IA
Sbjct: 67 CTRAINNKQLFGRVIKASIA 86
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 34/91 (37%), Positives = 54/91 (59%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L F T E +L+ FS +G + V + ++ T +S+G+ F+ + + DDA ALE
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65
Query: 105 MDHKNLDGRLIYVDIAKPGKDRFGGYPRTSG 135
M+ K++DGR I VD A GK GG R+ G
Sbjct: 66 MNGKSVDGRTIRVDEA--GKGGGGGGGRSGG 94
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T E L+ F +FG ++EV +VKD T++S+G+ FI +T + A A+ +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRA 66
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGG 129
M+ ++LDGR I VD A K + GG
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGG 92
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 142 (55.0 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 34/124 (27%), Positives = 69/124 (55%)
Query: 16 FANSLTNRENPCFRTFNLRASLSNYPL--------ASRIMVRNLPFTTHEHTLQKEFSAF 67
F N L N + N + SLS+ L +S++ + + ++ E +L++ F+ +
Sbjct: 7 FGNILKQTTN---KQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKY 63
Query: 68 GEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA--KPGKD 125
GEV + +++ D T +S+G+ F+ +TS + A A++++D ++L GR++ V+ A +
Sbjct: 64 GEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRTSGG 123
Query: 126 RFGG 129
FGG
Sbjct: 124 GFGG 127
Score = 35 (17.4 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 123 GKDRFGGYPRTSGPPKQQPLS-EQDEVA 149
G+D+FG ++ + P+ E ++VA
Sbjct: 279 GEDQFGSMEKSETKMEDGPIGGEFEDVA 306
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 160 (61.4 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 38/100 (38%), Positives = 58/100 (58%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L T+E L+ F +G + EV L+KD T KS+G+AF+ + S DA A
Sbjct: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGY-----PRTSGPPK 138
M+ K+LDG+ I V+ A KP +R G + PR+ GPP+
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFER-GRHGPPPPPRSRGPPR 107
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 31/92 (33%), Positives = 57/92 (61%)
Query: 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLA 101
++S++ V L + T + +L++ F++FGEV E ++ D T +S+G+ F+ ++ +D A A
Sbjct: 33 MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92
Query: 102 LESMDHKNLDGRLIYVDIA----KPGKDRFGG 129
++ MD K L+GR I V++A + FGG
Sbjct: 93 IKEMDGKELNGRQIRVNLATERSSAPRSSFGG 124
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 155 (59.6 bits), Expect = 6.5e-11, P = 6.5e-11
Identities = 35/95 (36%), Positives = 59/95 (62%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102
+S+I V + ++T E L++ FS +GEV + K++ D T +S+G+AF+ +TS ++A A+
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 103 ESMDHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPP 137
+ +D ++L GR I V+ A FGG R G P
Sbjct: 93 Q-LDGQDLHGRRIRVNYATERGSGFGG--RGFGGP 124
>UNIPROTKB|Q8TBF4 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471111 Gene3D:4.10.60.10
HOVERGEN:HBG107480 GO:GO:0005689 CTD:85437 HOGENOM:HOG000007632
KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW eggNOG:NOG270852
EMBL:AB062361 EMBL:BC010177 EMBL:BC022543 EMBL:BK005200
IPI:IPI00154614 RefSeq:NP_149105.3 UniGene:Hs.496279 PDB:2E5H
PDBsum:2E5H ProteinModelPortal:Q8TBF4 SMR:Q8TBF4 STRING:Q8TBF4
PhosphoSite:Q8TBF4 DMDM:158931154 PRIDE:Q8TBF4 DNASU:85437
Ensembl:ENST00000266529 GeneID:85437 KEGG:hsa:85437 UCSC:uc001rmz.3
GeneCards:GC12M042705 HGNC:HGNC:29620 HPA:HPA038864 MIM:610750
neXtProt:NX_Q8TBF4 PharmGKB:PA143485674 InParanoid:Q8TBF4
PhylomeDB:Q8TBF4 EvolutionaryTrace:Q8TBF4 GenomeRNAi:85437
NextBio:76004 ArrayExpress:Q8TBF4 Bgee:Q8TBF4 CleanEx:HS_ZCRB1
Genevestigator:Q8TBF4 GermOnline:ENSG00000139168 Uniprot:Q8TBF4
Length = 217
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 32/80 (40%), Positives = 50/80 (62%)
Query: 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALL 100
P S + V NLPF+ + L + FS +G+V +V ++KD+ T+KSKG AFI + +D A
Sbjct: 7 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQN 66
Query: 101 ALESMDHKNLDGRLIYVDIA 120
++++K L GR+I IA
Sbjct: 67 CTRAINNKQLFGRVIKASIA 86
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 36/103 (34%), Positives = 55/103 (53%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L T+E L+ F +G + EV L+KD T KS+G+AF+ + S DA A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGYPRTSGPPKQQPLSEQD 146
M+ K+LDG+ I V+ A KP + PR G + S +D
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFENVYLSPRDDGYSTKDSYSSRD 111
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 154 (59.3 bits), Expect = 8.5e-11, P = 8.5e-11
Identities = 29/82 (35%), Positives = 54/82 (65%)
Query: 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDAL 99
Y A RI V NLP+ L++ FS G+V + ++V D T +S+G+ F+Q +++++
Sbjct: 203 YDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVN 262
Query: 100 LALESMDHKNLDGRLIYVDIAK 121
+A+ ++D +NL+GR I V++A+
Sbjct: 263 VAIAALDGQNLEGRAIKVNVAE 284
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 154 (59.3 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 38/99 (38%), Positives = 57/99 (57%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L T+E L+ F +G + EV L+KD T KS+G+AF+ + S DA A
Sbjct: 11 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 70
Query: 105 MDHKNLDGRLIYVDIA-KPGKD--RFGGYP--RTSGPPK 138
M+ K+LDG+ I V+ A KP + R G P R+ GPP+
Sbjct: 71 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPR 109
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 154 (59.3 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 38/99 (38%), Positives = 57/99 (57%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L T+E L+ F +G + EV L+KD T KS+G+AF+ + S DA A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 105 MDHKNLDGRLIYVDIA-KPGKD--RFGGYP--RTSGPPK 138
M+ K+LDG+ I V+ A KP + R G P R+ GPP+
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPR 107
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 158 (60.7 bits), Expect = 9.6e-11, P = 9.6e-11
Identities = 33/106 (31%), Positives = 57/106 (53%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
+ +++ LP + ++ F++ GE+ KLV+D++T +S GY F+ Y ++DAL A+
Sbjct: 42 TNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVS 101
Query: 104 SMDHKNLDGRLIYVDIAKPGKDRF-GGYPRTSGPPKQQPLSEQDEV 148
S + L + I V A+P D+ G SG PK L E + +
Sbjct: 102 SFNGLRLQNKTIKVSYARPSNDQIKGSNLYVSGIPKSMTLHELESI 147
Score = 114 (45.2 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V NL T + L + FS FG + VK+++D +T++ KGYAF+ ++ +A A+ S+
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRD-LTQQCKGYAFVSMSNYTEAYNAMLSL 434
Query: 106 DHKNLDGRLIYV 117
+ NL G+ + V
Sbjct: 435 NGTNLAGKTLQV 446
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 154 (59.3 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 38/99 (38%), Positives = 57/99 (57%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L T+E L+ F +G + EV L+KD T KS+G+AF+ + S DA A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 105 MDHKNLDGRLIYVDIA-KPGKD--RFGGYP--RTSGPPK 138
M+ K+LDG+ I V+ A KP + R G P R+ GPP+
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPR 107
>RGD|1565256 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0070062
"extracellular vesicular exosome" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
response to interleukin-1" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
Uniprot:Q4V898
Length = 390
Score = 156 (60.0 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 37/99 (37%), Positives = 56/99 (56%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L T+E L+ F +G + EV L+KD T KS+G+AF+ + S DA A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 105 MDHKNLDGRLIYVDIA-KP----GKDRFGGYPRTSGPPK 138
M+ K+LDG+ I V+ A KP G+ PR+ GPP+
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGLPPPPRSRGPPR 107
>MGI|MGI:1343044 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X chromosome"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:0071347 "cellular response to
interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
Genevestigator:Q9WV02 Uniprot:Q9WV02
Length = 391
Score = 156 (60.0 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 37/99 (37%), Positives = 56/99 (56%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L T+E L+ F +G + EV L+KD T KS+G+AF+ + S DA A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 105 MDHKNLDGRLIYVDIA-KP----GKDRFGGYPRTSGPPK 138
M+ K+LDG+ I V+ A KP G+ PR+ GPP+
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGLPPPPRSRGPPR 107
>TAIR|locus:2172144 [details] [associations]
symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
Uniprot:Q9FIU6
Length = 156
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 32/97 (32%), Positives = 54/97 (55%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102
++ + V L T L+ F+ FGEVA+ K+V D ++ SKG+ F++Y + +D+ +
Sbjct: 55 STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114
Query: 103 ESMDHKNLDGRLIYVDIAKPGKDRFGGYPRT--SGPP 137
MD K LDG +I+ + A+P + P+ S PP
Sbjct: 115 AGMDGKFLDGWVIFAEYARPREQSQSYQPQNNMSRPP 151
>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
symbol:srsf2b "serine/arginine-rich splicing
factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
Length = 220
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 35/96 (36%), Positives = 58/96 (60%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V NL + T TL++ F +G V +V + +D TK+S+G+AF+++ + DA A+++M
Sbjct: 16 LKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 106 DHKNLDGRLIYVDIAKPGK--DRF----GGYPRTSG 135
D LDGR + V +A+ G+ D + GG R SG
Sbjct: 76 DGAILDGRELRVQMARYGRPPDSYYGGGGGGRRGSG 111
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 159 (61.0 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 31/75 (41%), Positives = 48/75 (64%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102
+ R+ VRNLPFT+ E L+K FS +G ++E+ D +TKK KG+AFI Y + A+ A
Sbjct: 77 SGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPEHAVKAY 136
Query: 103 ESMDHKNLDGRLIYV 117
MD + GR++++
Sbjct: 137 AEMDGQVFQGRMMHL 151
Score = 114 (45.2 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEI-TKKSKGYAFIQYTSQDDALLAL 102
S+I+VRN+PF +++ FS FGE+ V+L K T +G+ F+ + ++ DA A
Sbjct: 495 SKILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDAKKAF 554
Query: 103 ESMDHK-NLDGRLIYVDIA 120
++ H +L GR + ++ A
Sbjct: 555 NALCHSTHLYGRRLVLEWA 573
>UNIPROTKB|I3LN96 [details] [associations]
symbol:SNRNP35 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00530000063750 KO:K13155 OMA:QHEVFVD EMBL:CU468910
RefSeq:XP_003359137.1 Ensembl:ENSSSCT00000023937 GeneID:100626152
KEGG:ssc:100626152 Uniprot:I3LN96
Length = 246
Score = 128 (50.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 39/115 (33%), Positives = 58/115 (50%)
Query: 14 PMFANSLTNR-ENPCFRTFNLRASLSNY---------PLASRIMVRNLPFTTHEHTLQKE 63
P+ A S+ E+P R RA L+ Y PL + + V L T E L++
Sbjct: 13 PLKAGSIDGTDEDPHDRAI-WRAMLARYTPNKGVTGDPLLT-LFVARLNLQTKEEKLKEV 70
Query: 64 FSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118
FS +G++ ++LV+D +T SKGYAFI+Y + L A D +D I+VD
Sbjct: 71 FSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERSLLKAYRDADGLVIDQHEIFVD 125
Score = 39 (18.8 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 123 GKDRFGGYPRTSGPPKQQPLSEQDE 147
G+ RFGG R P P+ + D+
Sbjct: 151 GQLRFGGRDRPFRQPINLPVVKNDQ 175
>UNIPROTKB|O75526 [details] [associations]
symbol:RBMXL2 "RNA-binding motif protein, X-linked-like-2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 CTD:27288 HOGENOM:HOG000276235
HOVERGEN:HBG063314 OMA:GDFDLRP OrthoDB:EOG4WSWBK InterPro:IPR012604
Pfam:PF08081 eggNOG:NOG140744 HSSP:Q14011 EMBL:AF069682
EMBL:AC100875 EMBL:BC057796 EMBL:AF279289 IPI:IPI00004450
RefSeq:NP_055284.3 UniGene:Hs.121605 ProteinModelPortal:O75526
SMR:O75526 IntAct:O75526 STRING:O75526 PhosphoSite:O75526
PaxDb:O75526 PRIDE:O75526 Ensembl:ENST00000306904 GeneID:27288
KEGG:hsa:27288 UCSC:uc001mfc.2 GeneCards:GC11P007068
H-InvDB:HIX0035856 H-InvDB:HIX0171337 HGNC:HGNC:17886 HPA:HPA038912
HPA:HPA051842 MIM:605444 neXtProt:NX_O75526 PharmGKB:PA162400840
InParanoid:O75526 PhylomeDB:O75526 GenomeRNAi:27288 NextBio:50232
Bgee:O75526 CleanEx:HS_RBMXL2 Genevestigator:O75526 Uniprot:O75526
Length = 392
Score = 155 (59.6 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 35/96 (36%), Positives = 52/96 (54%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L T E L+ EF +G + EV L+KD T KS+G+AF+ + S DA A
Sbjct: 9 KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARD 68
Query: 105 MDHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQQ 140
M+ K+LDG+ I V A+ K F R PP+ +
Sbjct: 69 MNGKSLDGKAIKV--AQATKPAFESSRRGPPPPRSR 102
>UNIPROTKB|Q56JZ7 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9913 "Bos taurus" [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 eggNOG:COG0724 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 EMBL:AY911330
EMBL:BC109899 IPI:IPI00690660 RefSeq:NP_001020489.1
UniGene:Bt.48372 ProteinModelPortal:Q56JZ7 SMR:Q56JZ7 STRING:Q56JZ7
Ensembl:ENSBTAT00000025452 GeneID:504536 KEGG:bta:504536 CTD:85437
HOGENOM:HOG000007632 InParanoid:Q56JZ7 KO:K13154 OMA:RXVTIMK
OrthoDB:EOG4GXFNW NextBio:20866714 Uniprot:Q56JZ7
Length = 217
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALL 100
P S + V NLPF+ + L + FS +G+V +V ++KD+ T++SKG AFI + +D A
Sbjct: 7 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQN 66
Query: 101 ALESMDHKNLDGRLIYVDIA 120
++++K L GR+I IA
Sbjct: 67 CTRAINNKQLFGRVIKASIA 86
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 28/78 (35%), Positives = 51/78 (65%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102
+S++ + L ++ E +L+ FS+FGEVAEV++ D+ + +S+G+ F+ + + DAL A
Sbjct: 40 SSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAK 99
Query: 103 ESMDHKNLDGRLIYVDIA 120
++MD K L GR + + A
Sbjct: 100 DAMDGKGLLGRPLRISFA 117
>UNIPROTKB|Q1LZH0 [details] [associations]
symbol:SNRNP35 "U11/U12 small nuclear ribonucleoprotein 35
kDa protein" species:9913 "Bos taurus" [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 GO:GO:0005689 GeneTree:ENSGT00530000063750
EMBL:BC116002 IPI:IPI00730647 RefSeq:NP_001069024.1 UniGene:Bt.5294
ProteinModelPortal:Q1LZH0 STRING:Q1LZH0 PRIDE:Q1LZH0
Ensembl:ENSBTAT00000010602 GeneID:512142 KEGG:bta:512142 CTD:11066
HOGENOM:HOG000006374 HOVERGEN:HBG104583 InParanoid:Q1LZH0 KO:K13155
OMA:QHEVFVD OrthoDB:EOG4MSD0C NextBio:20870261 Uniprot:Q1LZH0
Length = 245
Score = 127 (49.8 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALL 100
PL + + V L T E L++ FS +G++ ++LV+D +T SKGYAFI+Y + L
Sbjct: 49 PLLT-LFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKDERSLLK 107
Query: 101 ALESMDHKNLDGRLIYVD 118
A D +D I+VD
Sbjct: 108 AYRDADGLVIDQHEIFVD 125
Score = 39 (18.8 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 123 GKDRFGGYPRTSGPPKQQPLSEQDE 147
G+ RFGG R P P+ + D+
Sbjct: 151 GQLRFGGRDRPFRKPINLPVVKNDQ 175
>UNIPROTKB|F1NZD3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
Uniprot:F1NZD3
Length = 385
Score = 154 (59.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 37/100 (37%), Positives = 56/100 (56%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L T+E L+ F +G + EV L+KD T KS+G+AF+ + S DA A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGY-----PRTSGPPK 138
M+ K+LDG+ I V+ A KP + G PR+ GPP+
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGGRRGPPPPPRSRGPPR 108
>UNIPROTKB|F1P6U2 [details] [associations]
symbol:SNRNP35 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005689 GeneTree:ENSGT00530000063750 CTD:11066 KO:K13155
OMA:QHEVFVD EMBL:AAEX03014640 RefSeq:XP_534648.2
ProteinModelPortal:F1P6U2 Ensembl:ENSCAFT00000011983 GeneID:477450
KEGG:cfa:477450 Uniprot:F1P6U2
Length = 246
Score = 126 (49.4 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALL 100
PL + + V L T E L++ FS +G++ ++LV+D +T SKGYAFI+Y + +
Sbjct: 49 PLLT-LFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGLSKGYAFIEYKEERSLIK 107
Query: 101 ALESMDHKNLDGRLIYVD 118
A D +D I+VD
Sbjct: 108 AYRDADGLVIDQHEIFVD 125
Score = 40 (19.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 123 GKDRFGGYPRTSGPPKQQPLSEQDE 147
G+ RFGG R P P+ + D+
Sbjct: 151 GQLRFGGRDRPFRKPINLPIIKNDQ 175
>UNIPROTKB|F1RQ90 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
Uniprot:F1RQ90
Length = 390
Score = 154 (59.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 38/99 (38%), Positives = 57/99 (57%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L T+E L+ F +G + EV L+KD T KS+G+AF+ + S DA A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 105 MDHKNLDGRLIYVDIA-KPGKD--RFGGYP--RTSGPPK 138
M+ K+LDG+ I V+ A KP + R G P R+ GPP+
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPR 107
>UNIPROTKB|D3JUI8 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9913 "Bos taurus" [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
"extracellular vesicular exosome" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
NextBio:20869035 Uniprot:D3JUI8
Length = 391
Score = 154 (59.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 38/99 (38%), Positives = 57/99 (57%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L T+E L+ F +G + EV L+KD T KS+G+AF+ + S DA A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 105 MDHKNLDGRLIYVDIA-KPGKD--RFGGYP--RTSGPPK 138
M+ K+LDG+ I V+ A KP + R G P R+ GPP+
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPR 107
>UNIPROTKB|P38159 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
Length = 391
Score = 154 (59.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 38/99 (38%), Positives = 57/99 (57%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L T+E L+ F +G + EV L+KD T KS+G+AF+ + S DA A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 105 MDHKNLDGRLIYVDIA-KPGKD--RFGGYP--RTSGPPK 138
M+ K+LDG+ I V+ A KP + R G P R+ GPP+
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPR 107
>UNIPROTKB|A5A6M3 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9598 "Pan troglodytes" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
Length = 391
Score = 154 (59.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 38/99 (38%), Positives = 57/99 (57%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L T+E L+ F +G + EV L+KD T KS+G+AF+ + S DA A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 105 MDHKNLDGRLIYVDIA-KPGKD--RFGGYP--RTSGPPK 138
M+ K+LDG+ I V+ A KP + R G P R+ GPP+
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPR 107
>UNIPROTKB|Q4R7F0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
Uniprot:Q4R7F0
Length = 391
Score = 154 (59.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 38/99 (38%), Positives = 57/99 (57%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L T+E L+ F +G + EV L+KD T KS+G+AF+ + S DA A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 105 MDHKNLDGRLIYVDIA-KPGKD--RFGGYP--RTSGPPK 138
M+ K+LDG+ I V+ A KP + R G P R+ GPP+
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPR 107
>UNIPROTKB|E2R068 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
Uniprot:E2R068
Length = 392
Score = 154 (59.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 38/99 (38%), Positives = 57/99 (57%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L T+E L+ F +G + EV L+KD T KS+G+AF+ + S DA A
Sbjct: 10 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 69
Query: 105 MDHKNLDGRLIYVDIA-KPGKD--RFGGYP--RTSGPPK 138
M+ K+LDG+ I V+ A KP + R G P R+ GPP+
Sbjct: 70 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPR 108
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 28/78 (35%), Positives = 49/78 (62%)
Query: 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLA 101
+A+R+ V NL TT + L++ FS +G V + +++D T +S+G+ F+ Y+S +A A
Sbjct: 1 MATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAA 60
Query: 102 LESMDHKNLDGRLIYVDI 119
+ MD K L+GR + V +
Sbjct: 61 VSGMDGKELNGRRVSVKL 78
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 159 (61.0 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 31/75 (41%), Positives = 48/75 (64%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102
+ R+ VRNLPFT+ E L+K FS +G ++E+ D +TKK KG+AFI Y + A+ A
Sbjct: 401 SGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPEHAVKAY 460
Query: 103 ESMDHKNLDGRLIYV 117
MD + GR++++
Sbjct: 461 AEMDGQVFQGRMMHL 475
Score = 114 (45.2 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEI-TKKSKGYAFIQYTSQDDALLAL 102
S+I+VRN+PF +++ FS FGE+ V+L K T +G+ F+ + ++ DA A
Sbjct: 819 SKILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDAKKAF 878
Query: 103 ESMDHK-NLDGRLIYVDIA 120
++ H +L GR + ++ A
Sbjct: 879 NALCHSTHLYGRRLVLEWA 897
Score = 107 (42.7 bits), Expect = 0.00057, P = 0.00057
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAE--VKLVKDEITKKSKGYAFIQYTSQDDALLA 101
SR++V+NLP E +K F+AFG + + +K KD K + + FI Y S+D+A A
Sbjct: 2 SRLIVKNLPNGMKEDRFRKLFAAFGTLTDCCLKFTKDG---KFRKFGFIGYKSEDEAQAA 58
Query: 102 LESMDHKNLDGRLIYVDIAK 121
L + +D + V++ K
Sbjct: 59 LNHFNRSFIDTSRVTVELCK 78
>TAIR|locus:4515103541 [details] [associations]
symbol:AT5G08695 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:YLEWAPR IPI:IPI00539175 RefSeq:NP_001119193.1 UniGene:At.68994
ProteinModelPortal:F4KCG5 SMR:F4KCG5 EnsemblPlants:AT5G08695.1
GeneID:6241377 KEGG:ath:AT5G08695 Uniprot:F4KCG5
Length = 690
Score = 157 (60.3 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102
A R+ V LP++T E L + FS FG+++EV LV D+ T+ +G AF+ Y + A +A+
Sbjct: 226 AGRLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAM 285
Query: 103 ESMDHKNLDGRLIYVDIAKP 122
+ +D GR +++ AKP
Sbjct: 286 DKLDKLPFQGRTLHILPAKP 305
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 153 (58.9 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 37/99 (37%), Positives = 57/99 (57%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L T+E L+ F +G + E+ L+KD T KS+G+AF+ + S DA A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 105 MDHKNLDGRLIYVDIA-KPGKD--RFGGYP--RTSGPPK 138
M+ K+LDG+ I V+ A KP + R G P R+ GPP+
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPR 107
>UNIPROTKB|E1BTK3 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GO:GO:0005689 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AADN02010031 IPI:IPI00592809
RefSeq:XP_416034.1 ProteinModelPortal:E1BTK3
Ensembl:ENSGALT00000015532 GeneID:417791 KEGG:gga:417791
NextBio:20821039 Uniprot:E1BTK3
Length = 216
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALL 100
P S + V NLPF + L + FS +G+V +V ++KD+ T+KSKG AFI + ++ A
Sbjct: 7 PSKSTVYVSNLPFALTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKESAQN 66
Query: 101 ALESMDHKNLDGRLIYVDIA 120
++++K L GR+I IA
Sbjct: 67 CSRALNNKQLFGRVIKASIA 86
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 29/97 (29%), Positives = 61/97 (62%)
Query: 28 FRTFNLRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGY 87
+R+F L + +S + V+ + F++ E TL + FS +G+V +V ++ D+I + KG+
Sbjct: 7 YRSFT--PLLFSRSFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGF 64
Query: 88 AFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGK 124
A++ ++S+++A AL ++ + +DGR++ +D K K
Sbjct: 65 AYVTFSSKEEAEKALLELNAQLVDGRVVILDTTKAAK 101
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 42/131 (32%), Positives = 68/131 (51%)
Query: 17 ANSLTNRENPCFRTFNLRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLV 76
++SL + + C R R S P R+ V L T LQ F++FG++ + +++
Sbjct: 14 SSSLLSSPSLCVR----RCSTLTSP---RLFVSGLSRLTTNEKLQDAFASFGQLVDARVI 66
Query: 77 KDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKDRFGGYPRTSGP 136
D + +SKG+ F+ Y + +DA A M+ K LDG +I+VD A+P + PR P
Sbjct: 67 TDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPRE------PRR--P 118
Query: 137 PKQQPLSEQDE 147
+Q+PL E
Sbjct: 119 LQQEPLRPSSE 129
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 33/77 (42%), Positives = 49/77 (63%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
+I V NLP+ E+ L + FS FG + VK+V++ T +SKGYAF+ Y + A+ AL++
Sbjct: 45 QIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDA 104
Query: 105 MDHKNLDGRLIYVDIAK 121
K+L GR + V IAK
Sbjct: 105 HG-KDLQGRSLVVRIAK 120
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 33/77 (42%), Positives = 49/77 (63%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
+I V NLP+ E+ L + FS FG + VK+V++ T +SKGYAF+ Y + A+ AL++
Sbjct: 45 QIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDA 104
Query: 105 MDHKNLDGRLIYVDIAK 121
K+L GR + V IAK
Sbjct: 105 HG-KDLQGRSLVVRIAK 120
>POMBASE|SPBC887.05c [details] [associations]
symbol:cwf29 "RNA-binding protein Cwf29" species:4896
"Schizosaccharomyces pombe" [GO:0000245 "spliceosomal complex
assembly" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005686 "U2 snRNP" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC887.05c GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0000245 GO:GO:0005686 eggNOG:COG0724
HOGENOM:HOG000174091 KO:K13107 HSSP:Q14103 PIR:T40730
RefSeq:NP_596479.1 ProteinModelPortal:O94290 IntAct:O94290
STRING:O94290 EnsemblFungi:SPBC887.05c.1 GeneID:2541212
KEGG:spo:SPBC887.05c OrthoDB:EOG441TN4 NextBio:20802324
Uniprot:O94290
Length = 217
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDA 98
+Y ++ I + NL F +E + FS FGE ++ LV+D+ T KSKG+AF++Y Q
Sbjct: 26 DYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRST 85
Query: 99 LLALESMDHKNLDGRLIYVD 118
+LA+++M + L RL+ VD
Sbjct: 86 VLAVDNMTNVKLLDRLVRVD 105
>ASPGD|ASPL0000061066 [details] [associations]
symbol:AN0421 species:162425 "Emericella nidulans"
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0042134 "rRNA primary transcript binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0034462
"small-subunit processome assembly" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
EMBL:AACD01000007 GO:GO:0003723 GO:GO:0030529 GO:GO:0006364
eggNOG:NOG323716 KO:K14787 RefSeq:XP_658025.1
ProteinModelPortal:Q5BGA9 STRING:Q5BGA9
EnsemblFungi:CADANIAT00002277 GeneID:2876194 KEGG:ani:AN0421.2
HOGENOM:HOG000211156 OMA:SHKGADA OrthoDB:EOG4J40R3 Uniprot:Q5BGA9
Length = 819
Score = 156 (60.0 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 36/116 (31%), Positives = 63/116 (54%)
Query: 36 SLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQ 95
++ N +++R+ VRNL + T E L+ FS FG++ E+ + D SKG+A++QY
Sbjct: 287 NIENIRISARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADP 346
Query: 96 DDALLALESMDHKNLDGRLIYVDIAKPGKD-RFGGYPRTSGP-PKQQPLSEQDEVA 149
D A+ A ++D K GRL+++ A K + + + P KQ+ + + E A
Sbjct: 347 DAAVEAYRNLDGKIFQGRLLHILPASQKKTYKLDEHELSKLPLKKQKQIKRKQEAA 402
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 30/94 (31%), Positives = 57/94 (60%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
+++ + L + T + L++ FS +G + E +VKD T +S+G+ F+++ S+ +A A+
Sbjct: 2 AKLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMG 61
Query: 104 SMDHKNLDGRLIYVDIA--KPGKDRFGGYPRTSG 135
+M+++ DGR+I VD A +P R GG+ G
Sbjct: 62 AMNNQEFDGRIIRVDKASERPAA-RNGGFQGRGG 94
>SGD|S000005054 [details] [associations]
symbol:NOP15 "Constituent of 66S pre-ribosomal particles"
species:4932 "Saccharomyces cerevisiae" [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0042273 "ribosomal large
subunit biogenesis" evidence=IMP;IPI] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0000915 "cytokinesis, actomyosin contractile
ring assembly" evidence=IMP] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000005054 GO:GO:0005737 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0003723
GO:GO:0000915 EMBL:Z69382 GO:GO:0042273 GO:GO:0030687 GO:GO:0006364
eggNOG:NOG244773 GeneTree:ENSGT00390000011515 KO:K14838 EMBL:Z71386
EMBL:AY693098 PIR:S63051 RefSeq:NP_014289.1
ProteinModelPortal:P53927 SMR:P53927 DIP:DIP-4741N IntAct:P53927
MINT:MINT-551800 STRING:P53927 PaxDb:P53927 PeptideAtlas:P53927
EnsemblFungi:YNL110C GeneID:855613 KEGG:sce:YNL110C CYGD:YNL110c
HOGENOM:HOG000000855 OMA:QKHEERI OrthoDB:EOG4BK8DG NextBio:979795
Genevestigator:P53927 GermOnline:YNL110C Uniprot:P53927
Length = 220
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 29/78 (37%), Positives = 49/78 (62%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
I V LP HE L K F+ FG++ EV+L +++ T S+ Y F+++ +++DA++A ESM
Sbjct: 93 IYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESM 152
Query: 106 DHKNLDGRLIYVDIAKPG 123
++ L G L+ V + G
Sbjct: 153 NNYLLMGHLLQVRVLPKG 170
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 138 (53.6 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+P+ E L+ FS G V +LV D T K KGY F +Y Q+ AL A+ ++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ + GR + VD A K++
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
Score = 39 (18.8 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 119 IAKPGKDRFGGYPRTSGPPKQQPLSEQDE 147
I PGK GG +S P Q ++ QD+
Sbjct: 547 IQGPGKQ--GGGQASSFSPGQSQVTPQDQ 573
>ZFIN|ZDB-GENE-030131-579 [details] [associations]
symbol:rbmx "RNA binding motif protein, X-linked"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0071347 "cellular response to interleukin-1" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
Bgee:Q7ZWA3 Uniprot:Q7ZWA3
Length = 379
Score = 150 (57.9 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 38/99 (38%), Positives = 55/99 (55%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L T E L+ FS FG ++EV L+KD T KS+G+AF+ Y + DA A
Sbjct: 9 KLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAARE 68
Query: 105 MDHKNLDGRLIYVDIA-KPGKDRFGGY----PRTSGPPK 138
M+ K LDG+ I V+ A KP + G PR+ GP +
Sbjct: 69 MNGKPLDGKPIKVEQATKPQFETSGRRGPPPPRSRGPSR 107
>UNIPROTKB|G4NC92 [details] [associations]
symbol:MGG_01109 "Nuclear cap-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CM001235
Gene3D:3.30.70.330 GO:GO:0003676 RefSeq:XP_003717825.1
ProteinModelPortal:G4NC92 EnsemblFungi:MGG_01109T0 GeneID:2674842
KEGG:mgr:MGG_01109 Uniprot:G4NC92
Length = 155
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 31/82 (37%), Positives = 48/82 (58%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKS---KGYAFIQYTSQDDALLAL 102
+ V LP E +L F FGE+A+VK+ K++ K + +G+A+++Y DDA A+
Sbjct: 11 LYVGGLPAAATEASLHDAFIPFGEIADVKMPKNDNPKSAETHRGFAYVEYEDADDAKEAM 70
Query: 103 ESMDHKNLDGRLIYVDIAKPGK 124
++MD GR+I V AKP K
Sbjct: 71 DNMDQSEFFGRIIKVHAAKPPK 92
>UNIPROTKB|Q29RT0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
KEGG:bta:617969 KEGG:bta:782306 CTD:27288
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
Length = 396
Score = 150 (57.9 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 36/93 (38%), Positives = 53/93 (56%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L T E +L+ F +G ++EV L+KD T KS+G+AFI + S DA A+
Sbjct: 9 KLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRD 68
Query: 105 MDHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPP 137
M+ K+LDG+ I V A+ K F R GPP
Sbjct: 69 MNGKSLDGKAIKV--AQATKPAFESGRR--GPP 97
>RGD|1306751 [details] [associations]
symbol:Rbmxrtl "RNA binding motif protein, X chromosome
retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IDA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
Length = 388
Score = 149 (57.5 bits), Expect = 6.7e-10, P = 6.7e-10
Identities = 36/99 (36%), Positives = 56/99 (56%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L T+E L+ F +G + E+ L+KD T KS+G+AF+ + S DA
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68
Query: 105 MDHKNLDGRLIYVDIA-KPGKD--RFGGYP--RTSGPPK 138
M+ K+LDG+ I V+ A KP + R G P R+ GPP+
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPR 107
>RGD|1585845 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
Length = 388
Score = 149 (57.5 bits), Expect = 6.7e-10, P = 6.7e-10
Identities = 36/99 (36%), Positives = 56/99 (56%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L T+E L+ F +G + E+ L+KD T KS+G+AF+ + S DA
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68
Query: 105 MDHKNLDGRLIYVDIA-KPGKD--RFGGYP--RTSGPPK 138
M+ K+LDG+ I V+ A KP + R G P R+ GPP+
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPR 107
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 154 (59.3 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 31/93 (33%), Positives = 54/93 (58%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102
+ R+ +RN+P+T E L++ FS G ++EV D +TKK KG+AF+ Y ++A+ AL
Sbjct: 398 SGRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSAL 457
Query: 103 ESMDHKNLDGRLIYVDIAKPGKDRFGGYPRTSG 135
+D GR+++V ++ K++ P G
Sbjct: 458 AQLDGHTFQGRVLHVMASRLKKEKADQGPDAPG 490
Score = 118 (46.6 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
S+I+VRN+PF L++ F FGE+ V+L K I +G+ FI + ++ DA A
Sbjct: 805 SKILVRNIPFQATVKELRELFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAFS 864
Query: 104 SMDHK-NLDGRLIYVDIA 120
++ H +L GR + ++ A
Sbjct: 865 ALCHSTHLYGRRLVLEWA 882
Score = 115 (45.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVK--DEITKK-SKGYAFIQYTSQDDALL 100
S + ++NL F T E TLQK FS G V + K D+ K S GY F+QY + + A
Sbjct: 702 STLFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMGYGFVQYKTPEAAQK 761
Query: 101 ALESMDHKNLDGRLIYVDIAK 121
A+ + H +D + V I++
Sbjct: 762 AMRQLQHCTVDEHQLEVKISE 782
>TAIR|locus:2101714 [details] [associations]
symbol:U1-70K "AT3G50670" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA;RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 EMBL:AL132979 GO:GO:0000398
eggNOG:COG0724 EMBL:M93439 EMBL:U52909 EMBL:U52910 EMBL:AY039874
EMBL:AY094003 IPI:IPI00517859 IPI:IPI00520131 PIR:S71367
RefSeq:NP_190636.1 RefSeq:NP_850676.1 UniGene:At.25571
ProteinModelPortal:Q42404 SMR:Q42404 IntAct:Q42404 STRING:Q42404
PaxDb:Q42404 PRIDE:Q42404 EnsemblPlants:AT3G50670.1 GeneID:824230
KEGG:ath:AT3G50670 GeneFarm:4534 TAIR:At3g50670
HOGENOM:HOG000236289 InParanoid:Q42404 KO:K11093 OMA:KKSRGYL
PhylomeDB:Q42404 ProtClustDB:CLSN2918318 Genevestigator:Q42404
GermOnline:AT3G50670 InterPro:IPR022023 Pfam:PF12220 Uniprot:Q42404
Length = 427
Score = 149 (57.5 bits), Expect = 8.1e-10, P = 8.1e-10
Identities = 31/90 (34%), Positives = 50/90 (55%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V L + + E +++EF ++G + V LV D++T K KGYAFI+Y D A +
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 106 DHKNLDGRLIYVDIAKPGKDRFGGYPRTSG 135
D + +DGR + VD+ + G+ PR G
Sbjct: 200 DGQKIDGRRVLVDVER-GRTVPNWRPRRLG 228
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 28/88 (31%), Positives = 53/88 (60%)
Query: 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLA 101
+ S++ V NL + + L++ F+A+G V ++V D T +S+G+ F++ S +A A
Sbjct: 1 MGSKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAA 60
Query: 102 LESMDHKNLDGRLIYVDIAKPGKDRFGG 129
+ ++ K +DGR + V+ A+P +R GG
Sbjct: 61 IAGLNGKEMDGRNLMVNEARP-PERRGG 87
>UNIPROTKB|Q16560 [details] [associations]
symbol:SNRNP35 "U11/U12 small nuclear ribonucleoprotein 35
kDa protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0003723 HSSP:Q9V535
eggNOG:COG0724 GO:GO:0005689 CTD:11066 HOGENOM:HOG000006374
HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD OrthoDB:EOG4MSD0C
EMBL:U44798 EMBL:U44799 EMBL:AK290127 EMBL:BC009622 EMBL:BC047678
EMBL:BC054034 EMBL:BC093671 EMBL:BC111955 EMBL:BK005197
IPI:IPI00007576 IPI:IPI00377030 PIR:G02371 RefSeq:NP_073208.1
RefSeq:NP_851030.1 UniGene:Hs.632738 ProteinModelPortal:Q16560
SMR:Q16560 STRING:Q16560 PhosphoSite:Q16560 DMDM:74754517
PRIDE:Q16560 DNASU:11066 Ensembl:ENST00000350887
Ensembl:ENST00000412157 Ensembl:ENST00000526639 GeneID:11066
KEGG:hsa:11066 UCSC:uc001ufb.1 UCSC:uc021rfv.1
GeneCards:GC12P123891 HGNC:HGNC:30852 neXtProt:NX_Q16560
PharmGKB:PA164726115 InParanoid:Q16560 ChiTaRS:SNRNP35
GenomeRNAi:11066 NextBio:42065 Bgee:Q16560 CleanEx:HS_SNRNP35
Genevestigator:Q16560 Uniprot:Q16560
Length = 246
Score = 123 (48.4 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALL 100
PL + + V L T E L++ FS +G++ ++LV+D +T SKGYAFI+Y + +
Sbjct: 49 PLLT-LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIK 107
Query: 101 ALESMDHKNLDGRLIYVD 118
A D +D I+VD
Sbjct: 108 AYRDADGLVIDQHEIFVD 125
Score = 37 (18.1 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 123 GKDRFGGYPRTSGPPKQQPLSEQD 146
G+ RFGG R P P+ + D
Sbjct: 151 GQLRFGGRDRPFRKPINLPVVKND 174
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 138 (53.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+P+ E L+ FS G V +LV D T K KGY F +Y Q+ AL A+ ++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ + GR + VD A K++
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
Score = 34 (17.0 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 119 IAKPGKDRFGGYPRTSGPPKQQPLSEQDE 147
+ G + GG +S P Q ++ QD+
Sbjct: 488 VGMQGAGKQGGGQPSSFSPGQSQVTPQDQ 516
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 138 (53.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+P+ E L+ FS G V +LV D T K KGY F +Y Q+ AL A+ ++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ + GR + VD A K++
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
Score = 35 (17.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 123 GKDRFGGYPRTSGPPKQQPLSEQDE 147
G + GG +S P Q ++ QD+
Sbjct: 550 GASKQGGSQPSSFSPGQSQVTPQDQ 574
>UNIPROTKB|I3LH22 [details] [associations]
symbol:LOC100514264 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU915617
Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
Length = 161
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 30/84 (35%), Positives = 52/84 (61%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F + + L+ S+F ++EV +VKD T++S+G+ FI +T+ + A + +
Sbjct: 7 KLFVGGLNFNSDKQALEDHISSFRPISEVVIVKDRETQRSRGFGFITFTNPEHASNVMRA 66
Query: 105 MDHKNLDGRLIYVDIAKPGKDRFG 128
M+ ++LDGR I+VD A GK G
Sbjct: 67 MNGESLDGRQIHVDHA--GKSAQG 88
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 29/85 (34%), Positives = 51/85 (60%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
R V L + T + +LQ FS +G+V + K++ D T +S+G+ F+ + S + A+E+
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 105 MDHKNLDGRLIYVDIAKPGKDRFGG 129
M+ ++LDGR I V+ A+ + GG
Sbjct: 67 MNGQDLDGRNITVNEAQSRRSDGGG 91
>TAIR|locus:2171539 [details] [associations]
symbol:RPS19 "ribosomal protein S19" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA;NAS] [GO:0015935 "small ribosomal
subunit" evidence=IEA] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=RCA] [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=IDA] InterPro:IPR000504
InterPro:IPR002222 InterPro:IPR005732 InterPro:IPR012677
InterPro:IPR020934 InterPro:IPR023575 Pfam:PF00076 Pfam:PF00203
PRINTS:PR00975 PROSITE:PS00323 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003735 eggNOG:COG0724
GO:GO:0005763 EMBL:AB018117 Gene3D:3.30.860.10 HAMAP:MF_00531
SUPFAM:SSF54570 TIGRFAMs:TIGR01050 KO:K02965 EMBL:X78035
EMBL:X77989 EMBL:AY045963 EMBL:AY091354 EMBL:Z18203 IPI:IPI00544075
PIR:S71114 RefSeq:NP_568681.1 UniGene:At.5396
ProteinModelPortal:P39697 SMR:P39697 STRING:P39697 PaxDb:P39697
PRIDE:P39697 EnsemblPlants:AT5G47320.1 GeneID:834779
KEGG:ath:AT5G47320 GeneFarm:3993 TAIR:At5g47320 InParanoid:P39697
PhylomeDB:P39697 Genevestigator:P39697 GermOnline:AT5G47320
Uniprot:P39697
Length = 212
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 26/80 (32%), Positives = 53/80 (66%)
Query: 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLA 101
+++++ + L T EH+L+ FS+F V E +++ +++T +S+GY F+ + S+D A A
Sbjct: 29 MSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSA 88
Query: 102 LESMDHKNLDGRLIYVDIAK 121
+ +M+ + L+G I V++AK
Sbjct: 89 ISAMNGQELNGFNISVNVAK 108
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 148 (57.2 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 35/105 (33%), Positives = 52/105 (49%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+P+ E L++ FS G V +KLV D + K KG+ F +Y Q+ AL A+ ++
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 106 DHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQQPLSEQDEVAD 150
+ + GR + VD A K R GP + P E E D
Sbjct: 78 NGYEIGGRTLRVDNACTEKSRMEMQQLLQGPQVENPYGEPCEPED 122
>UNIPROTKB|F1N0L5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:DAAA02045406 EMBL:DAAA02045407
EMBL:DAAA02045408 EMBL:DAAA02045409 EMBL:DAAA02045410
EMBL:DAAA02045411 EMBL:DAAA02045412 IPI:IPI00742584
Ensembl:ENSBTAT00000045133 Uniprot:F1N0L5
Length = 920
Score = 152 (58.6 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 29/75 (38%), Positives = 48/75 (64%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102
+ R+ VRNLP+T+ E L+K FS +G V+E+ D +TKK KG+AF+ + + A+ A
Sbjct: 362 SGRLFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAY 421
Query: 103 ESMDHKNLDGRLIYV 117
+D + GR+++V
Sbjct: 422 AEVDGQVFQGRMLHV 436
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 138 (53.6 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+P+ E L+ FS G V +LV D T K KGY F +Y Q+ AL A+ ++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ + GR + VD A K++
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
Score = 34 (17.0 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 123 GKDRFGGYPRTSGPPKQQPLSEQDE 147
G + GG +S P Q ++ QD+
Sbjct: 566 GASKQGGGQPSSFSPGQSQVTPQDQ 590
>FB|FBgn0036018 [details] [associations]
symbol:CG3335 species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0004386 eggNOG:COG0724 HSSP:Q61474 EMBL:AY113652
ProteinModelPortal:Q8MYR4 SMR:Q8MYR4 STRING:Q8MYR4 PaxDb:Q8MYR4
PRIDE:Q8MYR4 FlyBase:FBgn0036018 HOGENOM:HOG000132447
InParanoid:Q8MYR4 OrthoDB:EOG4M63ZP ArrayExpress:Q8MYR4 Bgee:Q8MYR4
Uniprot:Q8MYR4
Length = 918
Score = 151 (58.2 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 33/83 (39%), Positives = 48/83 (57%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102
+ RI RNL +TT E L+K F FG V EV L D++T+K KG+ + Y + AL A
Sbjct: 363 SGRIFFRNLAYTTTEEDLRKLFEQFGPVVEVNLPLDKLTRKIKGFGTVTYMMPEHALKAF 422
Query: 103 ESMDHKNLDGRLIYVDIAKPGKD 125
++D + GRL+++ P KD
Sbjct: 423 NTLDGTDFHGRLLHL---LPSKD 442
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 124 (48.7 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 22/71 (30%), Positives = 45/71 (63%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L F T + +L+ F +G + + ++KD TK+S+G+ F+ Y+S D+ ++++
Sbjct: 34 KLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNASMDA 93
Query: 105 MDHKNLDGRLI 115
HK +DGRL+
Sbjct: 94 RPHK-VDGRLV 103
Score = 43 (20.2 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 122 PGKDRFGGYPRTSGP 136
P K FGG R SGP
Sbjct: 380 PMKGNFGGGGRNSGP 394
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 148 (57.2 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 40/98 (40%), Positives = 55/98 (56%)
Query: 32 NLRASLSNYPLAS--RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAF 89
N AS N A R+ V N+ F+ E+ LQ F FGE+ V+L KDE T +S+GY F
Sbjct: 259 NSEASSGNKHSAPFHRLYVGNIHFSIDENDLQSVFEPFGELEFVQLQKDE-TGRSRGYGF 317
Query: 90 IQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKDRF 127
+Q+ + A ALE M+ +L GR I V + G D+F
Sbjct: 318 VQFRDPNQAREALEKMNGYDLGGRAIRVGL---GNDKF 352
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 144 (55.7 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 31/89 (34%), Positives = 52/89 (58%)
Query: 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDAL 99
Y A R+ V NLP+ L++ FS G+V E ++V D T +S+G+ F+ + D+
Sbjct: 240 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 299
Query: 100 LALESMDHKNLDGRLIYVDIAKPGKDRFG 128
A+ ++D +NL+GR I V++A+ R G
Sbjct: 300 EAISALDGQNLEGRAIRVNVAEERPPRRG 328
Score = 113 (44.8 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 27/93 (29%), Positives = 48/93 (51%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
+++ V NL + + L F G V +++ + T +S+G+ F+ +S D+A A+E
Sbjct: 150 AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209
Query: 104 SMDHKNLDGRLIYVDIAKPGKDRFGGYPRTSGP 136
+ +L+GRL+ V+ A P R PR P
Sbjct: 210 KFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEP 242
>UNIPROTKB|Q6IRQ4 [details] [associations]
symbol:rbmx "RNA-binding motif protein, X chromosome"
species:8355 "Xenopus laevis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
Length = 370
Score = 145 (56.1 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 38/100 (38%), Positives = 55/100 (55%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L T+E L+ F +G V EV L+KD T KS+G+AF+ + S DA A
Sbjct: 9 KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARE 68
Query: 105 MDHKNLDGRLIYVDIA-KPG---KDRFGG--YPRTSGPPK 138
++ K LDG+ I V+ A KP R G PR+ GPP+
Sbjct: 69 LNGKALDGKPIKVEQATKPSFSTPSRRGPPTSPRSRGPPR 108
>UNIPROTKB|Q47X92 [details] [associations]
symbol:CPS_3920 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
HOGENOM:HOG000276232 RefSeq:YP_270578.1 ProteinModelPortal:Q47X92
STRING:Q47X92 GeneID:3522867 KEGG:cps:CPS_3920 PATRIC:21470731
eggNOG:NOG258387 OMA:HELEGRQ ProtClustDB:CLSK913470
BioCyc:CPSY167879:GI48-3933-MONOMER Uniprot:Q47X92
Length = 78
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
+++VRNL +T E L+ FSA G VAE LV D+ T KSKG+AF++ ++ +A +AL S
Sbjct: 2 KLLVRNLSRSTTEQELRILFSAHGTVAECSLVLDQATAKSKGFAFVEMPNEAEAKVALSS 61
Query: 105 MDHKNLDGRLIYVDIAK 121
+ + I V IA+
Sbjct: 62 LHETRVAKNKIRVKIAQ 78
>TIGR_CMR|CPS_3920 [details] [associations]
symbol:CPS_3920 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR HOGENOM:HOG000276232
RefSeq:YP_270578.1 ProteinModelPortal:Q47X92 STRING:Q47X92
GeneID:3522867 KEGG:cps:CPS_3920 PATRIC:21470731 eggNOG:NOG258387
OMA:HELEGRQ ProtClustDB:CLSK913470
BioCyc:CPSY167879:GI48-3933-MONOMER Uniprot:Q47X92
Length = 78
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
+++VRNL +T E L+ FSA G VAE LV D+ T KSKG+AF++ ++ +A +AL S
Sbjct: 2 KLLVRNLSRSTTEQELRILFSAHGTVAECSLVLDQATAKSKGFAFVEMPNEAEAKVALSS 61
Query: 105 MDHKNLDGRLIYVDIAK 121
+ + I V IA+
Sbjct: 62 LHETRVAKNKIRVKIAQ 78
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 32/92 (34%), Positives = 52/92 (56%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
R V L + T++ LQ+ FS FG+V + K++ D + +S+G+ F+ + + A+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 105 MDHKNLDGRLIYVDIAKP-GKDRFGGYPRTSG 135
M+ K LDGR+I V+ A+ G GG SG
Sbjct: 67 MNGKELDGRVITVNEAQSRGSGGGGGGRGGSG 98
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 32/105 (30%), Positives = 61/105 (58%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ + NL + T + L++ F +G++ +V + +D+ +++SKG+ F+++ + DA AL+
Sbjct: 21 LKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRT 80
Query: 106 DHKNLDGRLIYVDIAK---PGKDRFG----GYPRTSGPPKQQPLS 143
D K +DGR + V +AK P +R G G R S P+++ S
Sbjct: 81 DGKLVDGRELRVTLAKYDRPSDERGGRGGGGGRRRSRSPRRRSRS 125
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 32/105 (30%), Positives = 61/105 (58%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ + NL + T + L++ F +G++ +V + +D+ +++SKG+ F+++ + DA AL+
Sbjct: 21 LKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRT 80
Query: 106 DHKNLDGRLIYVDIAK---PGKDRFG----GYPRTSGPPKQQPLS 143
D K +DGR + V +AK P +R G G R S P+++ S
Sbjct: 81 DGKLVDGRELRVTLAKYDRPSDERGGRGGGGGRRRSRSPRRRSRS 125
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 150 (57.9 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 29/75 (38%), Positives = 48/75 (64%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102
+ R+ VRNLP+T+ E L+K FS +G ++E+ D +TKK KG+AFI + + A+ A
Sbjct: 401 SGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAY 460
Query: 103 ESMDHKNLDGRLIYV 117
+D + GR+++V
Sbjct: 461 SEVDGQVFQGRMLHV 475
Score = 125 (49.1 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEI-TKKSKGYAFIQYTSQDDALLAL 102
S+I+VRN+PF H +++ FS FGE+ V+L K T +G+ F+ + ++ DA A
Sbjct: 832 SKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891
Query: 103 ESMDHK-NLDGRLIYVDIA 120
++ H +L GR + ++ A
Sbjct: 892 NALCHSTHLYGRRLVLEWA 910
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 150 (57.9 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/75 (37%), Positives = 48/75 (64%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102
+ R+ +RNLP+T+ E LQ+ FS FG ++E+ D +TKK KG+AF+ + + A+ A
Sbjct: 404 SGRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFVTFIFPEHAVRAY 463
Query: 103 ESMDHKNLDGRLIYV 117
+D + GR+++V
Sbjct: 464 AEVDGQVFQGRMLHV 478
Score = 123 (48.4 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 27/79 (34%), Positives = 48/79 (60%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEI-TKKSKGYAFIQYTSQDDALLAL 102
S+I+VRN+PF + +Q+ FS FGE+ V+L K T +G+ F+ + ++ DA A
Sbjct: 832 SKILVRNIPFQADKREIQELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891
Query: 103 ESMDHK-NLDGRLIYVDIA 120
+++ H +L GR + ++ A
Sbjct: 892 QALCHSTHLYGRRLVLEWA 910
>UNIPROTKB|A9UMT9 [details] [associations]
symbol:LOC100135403 "LOC100135403 protein" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
STRING:A9UMT9 Uniprot:A9UMT9
Length = 375
Score = 144 (55.7 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 38/100 (38%), Positives = 55/100 (55%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L T+E L+ F +G V EV L+KD T KS+G+AF+ + S DA A
Sbjct: 9 KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARE 68
Query: 105 MDHKNLDGRLIYVDIA-KPG---KDRFGGYP--RTSGPPK 138
++ K LDG+ I V+ A KP R G P R+ GPP+
Sbjct: 69 LNGKALDGKPIKVEQATKPSFSAPSRRGPPPPPRSRGPPR 108
>ZFIN|ZDB-GENE-041210-114 [details] [associations]
symbol:zcrb1 "zinc finger CCHC-type and RNA binding
motif 1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 ZFIN:ZDB-GENE-041210-114 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:AL929504 GeneTree:ENSGT00600000084414
HSSP:Q7YZ92 CTD:85437 HOGENOM:HOG000007632 KO:K13154
OrthoDB:EOG4GXFNW EMBL:BC092992 IPI:IPI00501794
RefSeq:NP_001017589.1 UniGene:Dr.80171 ProteinModelPortal:Q5SP50
SMR:Q5SP50 Ensembl:ENSDART00000067174 GeneID:550251 KEGG:dre:550251
eggNOG:NOG270852 InParanoid:Q5SP50 OMA:YRYSSVA NextBio:20879514
Bgee:Q5SP50 Uniprot:Q5SP50
Length = 218
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALL 100
P S + V N+PF+ + K S +G+V +V +VKD+ T+ SKG AF+ + ++ A
Sbjct: 7 PSKSTVYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDRESAYN 66
Query: 101 ALESMDHKNLDGRLIYVDIA 120
S+++K L GR++ IA
Sbjct: 67 CSRSLNNKQLFGRMVKASIA 86
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 149 (57.5 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 28/75 (37%), Positives = 48/75 (64%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102
+ R+ VRNLP+T+ E L+K FS +G ++E+ D +TKK KG+AF+ + + A+ A
Sbjct: 402 SGRLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAY 461
Query: 103 ESMDHKNLDGRLIYV 117
+D + GR+++V
Sbjct: 462 AEVDGQVFQGRMLHV 476
Score = 115 (45.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEI-TKKSKGYAFIQYTSQDDALLAL 102
S+I+VRN+PF +++ FS FGE+ V+L K T +G+ F+ + ++ DA A
Sbjct: 837 SKILVRNIPFQADSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRAF 896
Query: 103 ESMDHK-NLDGRLIYVDIA 120
++ H +L GR + ++ A
Sbjct: 897 NALCHSTHLYGRRLVLEWA 915
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 142 (55.0 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 31/98 (31%), Positives = 50/98 (51%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+ + E T++ FS G V +K+V D T K KGY FI++ A +A+ ++
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79
Query: 106 DHKNLDGRLIYVDIAKPGK--DRFGGYPRTSGPPKQQP 141
+ L GR++ VD A G + FG P ++ P
Sbjct: 80 NGYELSGRILRVDSAAGGMNMEEFGSSSNAPAPVEENP 117
>UNIPROTKB|H0YHU8 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC008119 HGNC:HGNC:16860 ChiTaRS:SART3
EMBL:AC010206 Ensembl:ENST00000547397 Bgee:H0YHU8 Uniprot:H0YHU8
Length = 144
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 34/126 (26%), Positives = 63/126 (50%)
Query: 13 QPMFANSLTNR-ENPCFRTFNLRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVA 71
+PMF + ++ +NP F+ F SL + ++ + LPF+ + L++ A G V
Sbjct: 12 RPMFVSPCVDKSKNPDFKVFRYSTSLEKH----KLFISGLPFSCTKEELEEICKAHGTVK 67
Query: 72 EVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKDRFGGYP 131
+++LV + K KG A+++Y ++ A A+ MD + +I V I+ P + + P
Sbjct: 68 DLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNPPQRKVPEKP 126
Query: 132 RTSGPP 137
T P
Sbjct: 127 ETRKAP 132
>UNIPROTKB|Q60AQ3 [details] [associations]
symbol:MCA0793 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR RefSeq:YP_113294.1
ProteinModelPortal:Q60AQ3 GeneID:3103031 KEGG:mca:MCA0793
PATRIC:22605384 OMA:INMEGHE Uniprot:Q60AQ3
Length = 141
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 44/128 (34%), Positives = 73/128 (57%)
Query: 8 TVSYPQPMFANSLTNRENPCFRTFNLRASLSNYPLAS---RIMVRNLPFTTHEHTLQKEF 64
T + +P+F++SL+ P F LR++L Y A ++ VRNLP T E L++ F
Sbjct: 20 TGRFKRPVFSSSLS--ATPRF-VAALRSTLL-YEGAQHMLKLFVRNLPPQTTEAGLKELF 75
Query: 65 SAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGK 124
+ +G+V E++L +D T K++G A + + A A+E++D + +G+ IYV + K G
Sbjct: 76 TGYGKVFELQLSRDMFTGKARGTASVSMEGHE-ARKAIEALDGSDYEGKTIYVALDK-GP 133
Query: 125 DRFGGYPR 132
R GG R
Sbjct: 134 -RSGGRGR 140
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 31/78 (39%), Positives = 46/78 (58%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
++I V +L + LQ F +GE+ E KL+ D T +SKG+AFI Y +QD A A+
Sbjct: 18 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 77
Query: 104 SMDHKNLDGRLIYVDIAK 121
+ +L GR I V+IA+
Sbjct: 78 KANGIDLQGRKIRVNIAR 95
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 31/78 (39%), Positives = 46/78 (58%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
++I V +L + LQ F +GE+ E KL+ D T +SKG+AFI Y +QD A A+
Sbjct: 18 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 77
Query: 104 SMDHKNLDGRLIYVDIAK 121
+ +L GR I V+IA+
Sbjct: 78 KANGIDLQGRKIRVNIAR 95
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 30/97 (30%), Positives = 56/97 (57%)
Query: 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLA 101
+++++ + L + T + +L+ F+ FG+V + K++ D T +S+G+ F+ + + A A
Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92
Query: 102 LESMDHKNLDGRLIYVDIA--KPGKDR-FGGYPRTSG 135
+ MD K L+GR I V+ A +P R +GG SG
Sbjct: 93 ISEMDGKELNGRHIRVNPANDRPSAPRAYGGGGGYSG 129
>TAIR|locus:2027438 [details] [associations]
symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
Genevestigator:Q9FZ84 Uniprot:Q9FZ84
Length = 155
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 36/104 (34%), Positives = 58/104 (55%)
Query: 33 LRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQY 92
L+ +LS P S+I V L +T L++ F +FG++ + +V D + S+G+ F+ Y
Sbjct: 27 LQGNLSLTP--SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTY 84
Query: 93 TSQDDALLALESMDHKNLDGRLIYVDIAKPGKDRFGG-YPRTSG 135
S + A A+++M +K LDGR+I V A G GG + R G
Sbjct: 85 DSIEVANNAMQAMQNKELDGRIIGVHPADSGGGGGGGGFARRGG 128
>SGD|S000001323 [details] [associations]
symbol:SNP1 "Component of U1 snRNP required for mRNA splicing
via spliceosome" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000243 "commitment
complex" evidence=IPI] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0030619 "U1 snRNA binding"
evidence=IPI] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0005685
"U1 snRNP" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000001323 GO:GO:0000166
EMBL:BK006942 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
EMBL:Z38060 GO:GO:0000243 eggNOG:COG0724 GO:GO:0071004
GO:GO:0005685 KO:K11093 InterPro:IPR022023 Pfam:PF12220
GeneTree:ENSGT00530000063750 HOGENOM:HOG000000970 OrthoDB:EOG4HMNKR
GO:GO:0030619 EMBL:X59986 EMBL:AY558085 PIR:S16815
RefSeq:NP_012203.1 ProteinModelPortal:Q00916 SMR:Q00916
DIP:DIP-663N IntAct:Q00916 MINT:MINT-397124 STRING:Q00916
PaxDb:Q00916 PeptideAtlas:Q00916 EnsemblFungi:YIL061C GeneID:854749
KEGG:sce:YIL061C CYGD:YIL061c OMA:ETSSSAY NextBio:977479
Genevestigator:Q00916 GermOnline:YIL061C Uniprot:Q00916
Length = 300
Score = 139 (54.0 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 30/79 (37%), Positives = 48/79 (60%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
I + LP+ E LQK F FGE+ ++++VKD+IT+KSKGYAFI + + +A + +
Sbjct: 109 IFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKEI 168
Query: 106 D-HKNLD--GRLIYVDIAK 121
H+ + R+ VDI +
Sbjct: 169 GVHRGIQIKDRICIVDIER 187
>TAIR|locus:2173338 [details] [associations]
symbol:SC35 "ortholog of human splicing factor SC35"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AB008268 HSSP:P19339 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276233 KO:K12891 OMA:DHRRRTR EMBL:AY063890
EMBL:AY122917 EMBL:AY127004 EMBL:AY143851 IPI:IPI00549029
RefSeq:NP_201225.1 RefSeq:NP_851261.1 UniGene:At.23698
UniGene:At.49215 ProteinModelPortal:Q9FMG4 SMR:Q9FMG4 STRING:Q9FMG4
PaxDb:Q9FMG4 PRIDE:Q9FMG4 EnsemblPlants:AT5G64200.1
EnsemblPlants:AT5G64200.2 GeneID:836541 KEGG:ath:AT5G64200
TAIR:At5g64200 InParanoid:Q9FMG4 ProtClustDB:CLSN2914827
ArrayExpress:Q9FMG4 Genevestigator:Q9FMG4 Uniprot:Q9FMG4
Length = 303
Score = 139 (54.0 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 32/97 (32%), Positives = 54/97 (55%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
++V N+ F T L F+ +G+V +V + +D T S+G+AF++Y +D+A A+E +
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77
Query: 106 DHKNLDGRLIYVDIAK--PGKDRFGGYPRTSGPPKQQ 140
D + +DGR I V AK P ++ PPK +
Sbjct: 78 DGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSR 114
>ZFIN|ZDB-GENE-061013-298 [details] [associations]
symbol:rbm46 "RNA binding motif protein 46"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-061013-298
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:BC124720 IPI:IPI00610686 RefSeq:NP_001073493.2
UniGene:Dr.132665 ProteinModelPortal:Q08BH5 SMR:Q08BH5
GeneID:566042 KEGG:dre:566042 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW NextBio:20887996 ArrayExpress:Q08BH5
Uniprot:Q08BH5
Length = 510
Score = 143 (55.4 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 41/91 (45%), Positives = 53/91 (58%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ VRNL +T E TL+ EFS ++K E KK YAFI + +++DAL ALESM
Sbjct: 222 LYVRNLMLSTTEETLRSEFS------QLKPGSVERVKKLTDYAFIHFYNREDALTALESM 275
Query: 106 DHKNLDGRLIYVDIAKP----GKDRFGGYPR 132
+ K +DG I V +AKP G RFG PR
Sbjct: 276 NGKVIDGSPIEVTLAKPASKDGNKRFG--PR 304
>TAIR|locus:2075676 [details] [associations]
symbol:AT3G47120 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL133292
EMBL:BT002472 EMBL:BT010369 IPI:IPI00540994 PIR:T45648
RefSeq:NP_190296.1 UniGene:At.35841 HSSP:Q9V535
ProteinModelPortal:Q9SD61 SMR:Q9SD61 IntAct:Q9SD61 PaxDb:Q9SD61
PRIDE:Q9SD61 EnsemblPlants:AT3G47120.1 GeneID:823865
KEGG:ath:AT3G47120 TAIR:At3g47120 eggNOG:COG0724
HOGENOM:HOG000174091 InParanoid:Q9SD61 KO:K13107 OMA:GHEEDRS
PhylomeDB:Q9SD61 ProtClustDB:CLSN2915690 Genevestigator:Q9SD61
Uniprot:Q9SD61
Length = 352
Score = 140 (54.3 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 38 SNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDD 97
+ Y ++ + V +PF E L FS +GE+ +V L++D+ T KSKG+AF+ Y Q
Sbjct: 30 AKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRS 89
Query: 98 ALLALESMDHKNLDGRLIYVD 118
+LA+++++ + GR I VD
Sbjct: 90 TILAVDNLNGALVLGRTIKVD 110
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 146 (56.5 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 28/75 (37%), Positives = 48/75 (64%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102
+ R+ VRNL +T+ E L+K FSA+G ++E+ D +TKK KG+AF+ + + A+ A
Sbjct: 399 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAY 458
Query: 103 ESMDHKNLDGRLIYV 117
+D + GR+++V
Sbjct: 459 AEVDGQVFQGRMLHV 473
Score = 120 (47.3 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEI-TKKSKGYAFIQYTSQDDALLAL 102
S+I+VRN+PF ++ +++ FS FGE+ V+L K T +G+ F+ + ++ DA A
Sbjct: 824 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 883
Query: 103 ESMDHK-NLDGRLIYVDIA 120
++ H +L GR + ++ A
Sbjct: 884 NALCHSTHLYGRRLVLEWA 902
Score = 107 (42.7 bits), Expect = 0.00057, P = 0.00057
Identities = 36/112 (32%), Positives = 56/112 (50%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAE--VKLVKDEITKKSKGYAFIQYTSQDDALLA 101
SR++V+NLP E ++ F+AFG + + +K KD K + + FI + S+++A A
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDG---KFRKFGFIGFKSEEEAQAA 58
Query: 102 LESMDHKNLDGRLIYVDIAK----PGKDR-FGGYPRTSGPPKQQPLSEQDEV 148
L +D I V+ K P K R + + + S PKQ P QD V
Sbjct: 59 LNHFHRSFIDTTRITVEFCKSFGDPSKPRAWSKHAQKSSQPKQ-P--SQDSV 107
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 138 (53.6 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V+ L T E TL++ F G V ++V D T SKG+ F+ + S++DA A E+M
Sbjct: 199 LFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 255
Query: 106 DHKNLDGRLIYVDIAKP-GKDRFGG 129
+ +DG + +D AKP G+ FGG
Sbjct: 256 EDGEIDGNKVTLDWAKPKGEGGFGG 280
Score = 115 (45.5 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 26/77 (33%), Positives = 48/77 (62%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+++ NL ++ E TLQ+ F + +K+ +++ KSKGYAFI++ S +DA AL S
Sbjct: 113 LVLSNLSYSATEETLQEVFE---KATFIKVPQNQ-NGKSKGYAFIEFASFEDAKEALNSC 168
Query: 106 DHKNLDGRLIYVDIAKP 122
+ + ++GR I +++ P
Sbjct: 169 NKREIEGRAIRLELQGP 185
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 27/79 (34%), Positives = 50/79 (63%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V + T E +L FS+FG++ +++ + TKK++G+AF++Y DDA AL +M
Sbjct: 10 LFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYNM 69
Query: 106 DHKNLDGRLIYVDIAKPGK 124
++ L+G+ I+V+ +K K
Sbjct: 70 NNFELNGKRIHVNYSKTKK 88
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 27/79 (34%), Positives = 50/79 (63%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V + T E +L FS+FG++ +++ + TKK++G+AF++Y DDA AL +M
Sbjct: 10 LFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYNM 69
Query: 106 DHKNLDGRLIYVDIAKPGK 124
++ L+G+ I+V+ +K K
Sbjct: 70 NNFELNGKRIHVNYSKTKK 88
>UNIPROTKB|E2RIB8 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005794 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074976 KO:K14573 CTD:55131 OMA:KSMNMKE
EMBL:AAEX03009272 EMBL:AAEX03009273 RefSeq:XP_532435.3
ProteinModelPortal:E2RIB8 Ensembl:ENSCAFT00000002617 GeneID:475203
KEGG:cfa:475203 NextBio:20851079 Uniprot:E2RIB8
Length = 751
Score = 144 (55.7 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 34/106 (32%), Positives = 60/106 (56%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
+R+++RNL F E L+ F +G V EV + + K +G+AF+Q+ + +A AL+
Sbjct: 114 ARLIIRNLSFKCSEDDLKTVFGQYGAVLEVNIPRKP-DGKMRGFAFVQFKNLLEAGKALK 172
Query: 104 SMDHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQQPLSEQDEVA 149
SM+ K + GR + VD A KD++ S P +++P + E++
Sbjct: 173 SMNMKEIKGRTVAVDWAV-AKDKYKNTQSASAPGEKRPEPKHQELS 217
Score = 110 (43.8 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ +RNL F + E L + FG++ V++V T+ SKG AF Q+ +Q+ A LE+
Sbjct: 329 VFIRNLSFDSEEEELGELLQQFGDLKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLEAA 388
Query: 106 DHKN------LDGRLIYVDIA 120
+ LDGR + VD+A
Sbjct: 389 SPETEGGGLKLDGRQLRVDLA 409
Score = 108 (43.1 bits), Expect = 0.00029, P = 0.00029
Identities = 29/108 (26%), Positives = 55/108 (50%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V LP + L++ FS G + + +V ++ +K +G+ ++ ++ +D AL+ +
Sbjct: 6 LFVSRLPPSARSEQLEELFSQVGPLKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 106 DHKNLDGRLIYVDIAKP---GKDRFGGYPRTSGPPKQQPLSEQDEVAD 150
+G I V IAK K + G S PPK++P ++ +VAD
Sbjct: 66 T--TFEGCKINVTIAKKKQRNKSKEKGENENSEPPKKEPKPKKPKVAD 111
Score = 34 (17.0 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 131 PRTSGPPKQQPLSEQDE 147
P T P ++QP +D+
Sbjct: 595 PATGEPQQEQPALGKDQ 611
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 142 (55.0 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 33/85 (38%), Positives = 49/85 (57%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V+ L T E TL++ F G V ++V D T SKG+ F+ + S++DA A E+M
Sbjct: 431 LFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKTAKEAM 487
Query: 106 DHKNLDGRLIYVDIAKP-GKDRFGG 129
+ +DG + +D AKP GK FGG
Sbjct: 488 EDGEIDGNKVTLDWAKPKGKGGFGG 512
Score = 108 (43.1 bits), Expect = 0.00020, P = 0.00020
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+++ NL ++ E TLQ+ F E A V KSKGYAFI++ S +DA AL S
Sbjct: 345 LVLSNLSYSATEETLQEVF----EKATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSC 400
Query: 106 DHKNLDGRLIYVDIAKP 122
+ ++GR I +++ P
Sbjct: 401 NKMEIEGRTIRLELQGP 417
>UNIPROTKB|F1P133 [details] [associations]
symbol:F1P133 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:YMEGCAP EMBL:AADN02013152
IPI:IPI00575891 ProteinModelPortal:F1P133
Ensembl:ENSGALT00000006408 Uniprot:F1P133
Length = 166
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 31/91 (34%), Positives = 52/91 (57%)
Query: 38 SNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDD 97
+ Y ++ + + LP+ E + FS +GEV + LV+D+ T KSKG+ F+ Y Q
Sbjct: 30 AEYKDSAWVFIGGLPYQLTEGDVICVFSQYGEVVNINLVRDKKTGKSKGFCFLCYEDQRS 89
Query: 98 ALLALESMDHKNLDGRLIYVD-IA--KPGKD 125
+LA+++ + + GR I VD +A +P KD
Sbjct: 90 TVLAVDNFNGIKIKGRTIRVDHVANYRPPKD 120
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 50 NLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKN 109
N+P+ E L+ FS G V +LV D T K KGY F +Y Q+ AL A+ +++ +
Sbjct: 3 NIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGRE 62
Query: 110 LDGRLIYVDIAKPGKDR 126
GR + VD A K++
Sbjct: 63 FSGRALRVDNAASEKNK 79
>ZFIN|ZDB-GENE-040825-2 [details] [associations]
symbol:snrnp70 "small nuclear ribonucleoprotein 70
(U1)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0060218 "hematopoietic stem cell differentiation" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040825-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0060218 GO:GO:0030529
KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 EMBL:BX324157 EMBL:AY648811
IPI:IPI00817875 RefSeq:NP_001003875.1 UniGene:Dr.35845
STRING:Q6DRE8 Ensembl:ENSDART00000055279 GeneID:445398
KEGG:dre:445398 InParanoid:Q6DRE8 NextBio:20832103 Uniprot:Q6DRE8
Length = 495
Score = 141 (54.7 bits), Expect = 7.7e-09, P = 7.7e-09
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V + + T E L++EF +G + + +V ++ T K +GYAFI+Y + D A +
Sbjct: 105 LFVARINYDTTESKLRREFEVYGPIKRIYIVYNKKTGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 106 DHKNLDGRLIYVDIAKPGKDRFGGYPRTSG 135
D K +DGR + VD+ + G+ G PR G
Sbjct: 165 DGKKIDGRRVLVDVER-GRTVKGWRPRRLG 193
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 26/83 (31%), Positives = 49/83 (59%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
+ + ++N + +L++ FS FG+ VK+++D KSKG+ F+ Y +DA A+E
Sbjct: 104 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVE 162
Query: 104 SMDHKNLDGRLIYVDIAKPGKDR 126
M+ K + G++I+V A+ +R
Sbjct: 163 EMNGKEISGKIIFVGRAQKKVER 185
>CGD|CAL0000019 [details] [associations]
symbol:orf19.1646 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0000019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000014
EMBL:AACQ01000013 GO:GO:0006364 RefSeq:XP_721604.1
RefSeq:XP_721723.1 ProteinModelPortal:Q5AJS6 STRING:Q5AJS6
GeneID:3636592 GeneID:3636694 KEGG:cal:CaO19.1646
KEGG:cal:CaO19.9215 eggNOG:NOG323716 KO:K14787 Uniprot:Q5AJS6
Length = 841
Score = 143 (55.4 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 33/107 (30%), Positives = 58/107 (54%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
R+ +RN+ + E + FS +G + EV + D T KSKG+ ++Q+ ++DA A S
Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRS 370
Query: 105 MDHKNLDGRLIYVDIAKPGKD-RFGGYPRTSGP-PKQQPLSEQDEVA 149
+D + GRL+++ A KD R + + P KQ+ L ++ + A
Sbjct: 371 LDKQIFQGRLLHILPADKKKDHRLDEFDLKNLPLKKQRELKKKAQAA 417
Score = 113 (44.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 23/87 (26%), Positives = 51/87 (58%)
Query: 35 ASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTS 94
+S+ +S+I+++NLPF L + F AFG++ V++ K + + ++G+AF+++
Sbjct: 708 SSIKKSGKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPK-KFDQSARGFAFVEFNL 766
Query: 95 QDDALLALESMDHKNLDGRLIYVDIAK 121
+A A+ ++ +L GR + + A+
Sbjct: 767 MKEAETAMSQLEGVHLLGRRLVMQYAE 793
Score = 109 (43.4 bits), Expect = 0.00022, P = 0.00022
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
SR++V+ LP E L++ FS G+V +VKL+K +S+ +AFI Y S D A A++
Sbjct: 2 SRLIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKR-NGESRKFAFIGYKSADAAERAVK 60
Query: 104 SMDHKNLDGRLIYVDIAKPGKD 125
+ +D I V+ AK D
Sbjct: 61 YFNKSFIDTARIEVEFAKTFSD 82
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 142 (55.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 35/98 (35%), Positives = 54/98 (55%)
Query: 33 LRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQY 92
L+ S S + + V+ L T E TL++ F G V ++V D T SKG+ F+ +
Sbjct: 558 LQGSNSRSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDF 614
Query: 93 TSQDDALLALESMDHKNLDGRLIYVDIAKP-GKDRFGG 129
S++DA A E+M+ +DG + +D AKP G+ FGG
Sbjct: 615 NSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGG 652
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 144 (55.7 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 40/105 (38%), Positives = 58/105 (55%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
SRI V +L F+ E ++ FS FG + + L KD + KSKGYAFI+Y +Q+ A AL+
Sbjct: 588 SRIYVGSLHFSLTEDVIRATFSVFGNIKSLALGKDA-SGKSKGYAFIEYDNQESAAKALQ 646
Query: 104 SMDHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQQPLSEQDEV 148
SM + + GR I V A+P F G +QQ +Q ++
Sbjct: 647 SMTNYVMCGRAIKV--ARP----FTGTGSHQQQQQQQQQQQQQQI 685
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 34/105 (32%), Positives = 55/105 (52%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
+ I V+NL E LQ FS FG++ VK+++D+ + S+G+ F+ + +DA A+
Sbjct: 191 TNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDD-SGHSRGFGFVNFEKHEDAQKAVT 249
Query: 104 SMDHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQQPLSEQDEV 148
M+ K + GRL+YV A+ +R R KQ L+ V
Sbjct: 250 DMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGV 294
Score = 115 (45.5 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 28/85 (32%), Positives = 49/85 (57%)
Query: 33 LRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQY 92
+ AS YPLAS + V +L E L ++FS G + +++ +D T++S GYA+I +
Sbjct: 1 MNASGPGYPLAS-LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINF 59
Query: 93 TSQDDALLALESMDHKNLDGRLIYV 117
DA AL++M+ + + G+ I +
Sbjct: 60 QQPADAERALDTMNFEVIKGQPIRI 84
>POMBASE|SPAC19A8.13 [details] [associations]
symbol:usp101 "U1 snRNP-associated protein Usp101
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000243
"commitment complex" evidence=ISO] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0030619 "U1
snRNA binding" evidence=ISO] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC19A8.13
GO:GO:0005829 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0005685 GO:GO:0000395 KO:K11093 InterPro:IPR022023
Pfam:PF12220 PIR:T37948 RefSeq:NP_593779.1 HSSP:P62995
ProteinModelPortal:O13829 DIP:DIP-59803N STRING:O13829
EnsemblFungi:SPAC19A8.13.1 GeneID:2542461 KEGG:spo:SPAC19A8.13
HOGENOM:HOG000000970 OMA:YLPPVED OrthoDB:EOG4HMNKR NextBio:20803517
GO:GO:0030619 Uniprot:O13829
Length = 261
Score = 134 (52.2 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 27/90 (30%), Positives = 53/90 (58%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ + L + T E +++EF+ +G + +++V++++T KS GYAF+ + + D +A ++
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 106 DHKNLDGRLIYVDIAKPGKDRFGGYPRTSG 135
L+GR I VD+ + G+ G PR G
Sbjct: 162 AGLMLNGRRIVVDVER-GRTVKGWLPRKLG 190
>TAIR|locus:2079276 [details] [associations]
symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
Genevestigator:Q9LIN3 Uniprot:Q9LIN3
Length = 245
Score = 133 (51.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 34/99 (34%), Positives = 53/99 (53%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQ---DDALLA 101
R + L +TT + L+ F +G + E K+V D+ + +S+G+ FI + + D+A+ A
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 102 LESMDHKNLDGRLIYVDIAKP-----GKDRFGGYPRTSG 135
+ MD LDGR I VD A+P G+D G R G
Sbjct: 68 MNGMD---LDGRTITVDKAQPHQGGAGRDNDGDRGRDRG 103
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 137 (53.3 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V+ L T E TL++ F G + ++V D T SKG+ F+ + S++DA A E+M
Sbjct: 228 LFVKGLSEETTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 284
Query: 106 DHKNLDGRLIYVDIAKP-GKDRFGG 129
+ +DG + +D AKP G+ FGG
Sbjct: 285 EDGEIDGNKVTLDWAKPKGEGGFGG 309
Score = 115 (45.5 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 26/77 (33%), Positives = 48/77 (62%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+++ NL ++ E TLQ+ F + +K+ +++ KSKGYAFI++ S +DA AL S
Sbjct: 142 LVLSNLAYSATEETLQEVFE---KATFIKVPQNQ-NGKSKGYAFIEFASFEDAKEALNSC 197
Query: 106 DHKNLDGRLIYVDIAKP 122
+ + ++GR I +++ P
Sbjct: 198 NKREIEGRAIRLELQGP 214
Score = 104 (41.7 bits), Expect = 0.00057, P = 0.00057
Identities = 35/105 (33%), Positives = 51/105 (48%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102
A ++ +NLP+ + L KE F + E++LV + KSKG A+I++ ++ DA L
Sbjct: 46 ARTLLAKNLPYKVTQDEL-KE--VFEDAVEIRLVSKD--GKSKGIAYIEFKTEADAEKTL 100
Query: 103 ESMDHKNLDGR---LIYVDIAKPGKDRFGGYPRT-SGPPKQQPLS 143
E +DGR L Y +D GG T SG K LS
Sbjct: 101 EEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLS 145
>DICTYBASE|DDB_G0279695 [details] [associations]
symbol:DDB_G0279695 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0279695 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000032 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_641604.1
ProteinModelPortal:Q54WE9 PRIDE:Q54WE9 EnsemblProtists:DDB0233747
GeneID:8622181 KEGG:ddi:DDB_G0279695 InParanoid:Q54WE9 OMA:HEMDGRQ
Uniprot:Q54WE9
Length = 84
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 28/79 (35%), Positives = 51/79 (64%)
Query: 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLA 101
+ +RI V +P++ + L+ FS FG V++ +V D ITK+SKG+ F+ + + + A A
Sbjct: 1 MTNRIFVARIPWSICKIALKTHFSKFGPVSDGYVVLDRITKRSKGFGFVTFDNAESAQNA 60
Query: 102 LESMDHKNLDGRLIYVDIA 120
+ S+ H+ +DGR + V++A
Sbjct: 61 VNSV-HE-MDGRQLVVNLA 77
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 24/64 (37%), Positives = 45/64 (70%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T+E +L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHK 108
M+ K
Sbjct: 67 MNGK 70
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 24/64 (37%), Positives = 45/64 (70%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T+E +L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHK 108
M+ K
Sbjct: 67 MNGK 70
>UNIPROTKB|G3MY63 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063480 EMBL:DAAA02005516 EMBL:DAAA02005517
EMBL:DAAA02005518 Ensembl:ENSBTAT00000065390 Uniprot:G3MY63
Length = 271
Score = 134 (52.2 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 40/123 (32%), Positives = 62/123 (50%)
Query: 18 NSLTNRENPCFRT-FNLRASLSNYP--LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVK 74
+SL+ NP N S Y + +RI V + F T+E+ L+K FS +G V EVK
Sbjct: 16 DSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVK 75
Query: 75 LVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKDRFGGYPRTS 134
+V D SKGY F+ + +Q+DA L+ + N + + +I + + G PR+S
Sbjct: 76 IVNDR-AGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKL--NIGPAIRKQQVGIPRSS 132
Query: 135 GPP 137
P
Sbjct: 133 IMP 135
>FB|FBgn0028382 [details] [associations]
symbol:cyp33 "cyclophilin-33" species:7227 "Drosophila
melanogaster" [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=IEA;NAS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0006457 "protein folding" evidence=IEA;NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006911 "phagocytosis, engulfment" evidence=IMP] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 EMBL:AE013599 GO:GO:0006457 GO:GO:0006911
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 GeneTree:ENSGT00690000101651
KO:K09564 EMBL:AF182826 EMBL:AY061421 RefSeq:NP_523773.1
UniGene:Dm.2854 ProteinModelPortal:Q9V3G3 SMR:Q9V3G3 DIP:DIP-21959N
IntAct:Q9V3G3 MINT:MINT-1643160 STRING:Q9V3G3 PaxDb:Q9V3G3
PRIDE:Q9V3G3 EnsemblMetazoa:FBtr0086945 GeneID:36984
KEGG:dme:Dmel_CG4886 UCSC:CG4886-RA CTD:36984 FlyBase:FBgn0028382
InParanoid:Q9V3G3 OMA:AFIEFEL OrthoDB:EOG4QV9TN PhylomeDB:Q9V3G3
GenomeRNAi:36984 NextBio:801358 Bgee:Q9V3G3 GermOnline:CG4886
Uniprot:Q9V3G3
Length = 300
Score = 135 (52.6 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
I V L E L F FG++A++++ D +++ +G+AFI+Y +DA A+++M
Sbjct: 8 IYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNM 67
Query: 106 DHKNLDGRLIYVDIAKP 122
+ L GR I V++AKP
Sbjct: 68 NDSELCGRTIRVNLAKP 84
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 138 (53.6 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+P+ E L+ FS G V +LV D T K KGY F +Y Q+ AL A+ ++
Sbjct: 22 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 81
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ + GR + VD A K++
Sbjct: 82 NGREFSGRALRVDNAASEKNK 102
>MGI|MGI:1922638 [details] [associations]
symbol:Boll "bol, boule-like (Drosophila)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0007126
"meiosis" evidence=ISO] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=ISO] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0045948 "positive regulation of translational initiation"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1922638 GO:GO:0007275
GO:GO:0005737 GO:GO:0030154 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 CTD:66037
eggNOG:NOG260394 HOGENOM:HOG000095250 HOVERGEN:HBG048761
OrthoDB:EOG4MPHQQ EMBL:AF272859 EMBL:AK016125 EMBL:BY103870
IPI:IPI00403643 IPI:IPI00886395 RefSeq:NP_001106838.1
RefSeq:NP_083543.2 UniGene:Mm.483408 ProteinModelPortal:Q924M5
SMR:Q924M5 STRING:Q924M5 PhosphoSite:Q924M5 PRIDE:Q924M5
DNASU:75388 Ensembl:ENSMUST00000159398 GeneID:75388 KEGG:mmu:75388
UCSC:uc007bal.1 UCSC:uc007bam.1 GeneTree:ENSGT00530000063480
InParanoid:Q924M5 NextBio:342892 Bgee:Q924M5 CleanEx:MM_BOLL
Genevestigator:Q924M5 GermOnline:ENSMUSG00000025977 Uniprot:Q924M5
Length = 281
Score = 134 (52.2 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 42/126 (33%), Positives = 63/126 (50%)
Query: 15 MFANSLTNRENPCFRT-FNLRASLSNYP--LASRIMVRNLPFTTHEHTLQKEFSAFGEVA 71
M +SL+ NP N S Y + +RI V + F T+E+ L+K FS +G V
Sbjct: 1 MQTDSLSPSPNPVSPVPLNNPTSGPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVK 60
Query: 72 EVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKDRFGGYP 131
EVK+V D SKGY FI + +Q+DA L+ + N + + +I + + G P
Sbjct: 61 EVKIVNDR-AGVSKGYGFITFETQEDAQKILQEAEKLNYKDKKL--NIGPAIRKQQVGIP 117
Query: 132 RTSGPP 137
R+S P
Sbjct: 118 RSSLMP 123
>UNIPROTKB|Q8N9W6 [details] [associations]
symbol:BOLL "Protein boule-like" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008494
"translation activator activity" evidence=IDA] [GO:0045948
"positive regulation of translational initiation" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126 "meiosis"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0007126
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 EMBL:CH471063
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008494
EMBL:AF272858 EMBL:AM295005 EMBL:AK058099 EMBL:AK093453
EMBL:AK097795 EMBL:AC011997 EMBL:BC033674 IPI:IPI00056506
IPI:IPI00377133 IPI:IPI00396276 IPI:IPI00871244 RefSeq:NP_149019.1
RefSeq:NP_932074.1 UniGene:Hs.169797 ProteinModelPortal:Q8N9W6
SMR:Q8N9W6 IntAct:Q8N9W6 STRING:Q8N9W6 PhosphoSite:Q8N9W6
DMDM:44887719 PRIDE:Q8N9W6 DNASU:66037 Ensembl:ENST00000321801
Ensembl:ENST00000392296 Ensembl:ENST00000433157 GeneID:66037
KEGG:hsa:66037 UCSC:uc002uur.2 UCSC:uc002uus.2 UCSC:uc002uut.2
UCSC:uc002uuu.1 CTD:66037 GeneCards:GC02M198591 H-InvDB:HIX0030239
HGNC:HGNC:14273 HPA:HPA018678 MIM:606165 neXtProt:NX_Q8N9W6
PharmGKB:PA25397 eggNOG:NOG260394 HOGENOM:HOG000095250
HOVERGEN:HBG048761 OrthoDB:EOG4MPHQQ GenomeRNAi:66037 NextBio:67546
ArrayExpress:Q8N9W6 Bgee:Q8N9W6 CleanEx:HS_BOLL
Genevestigator:Q8N9W6 GermOnline:ENSG00000152430 GO:GO:0045948
Uniprot:Q8N9W6
Length = 283
Score = 134 (52.2 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 41/126 (32%), Positives = 62/126 (49%)
Query: 15 MFANSLTNRENPCFRT-FNLRASLSNYP--LASRIMVRNLPFTTHEHTLQKEFSAFGEVA 71
M +SL+ NP N S Y + +RI V + F T+E L+K FS +G V
Sbjct: 1 MQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVK 60
Query: 72 EVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKDRFGGYP 131
EVK+V D SKGY F+ + +Q+DA L+ + N + + +I + + G P
Sbjct: 61 EVKIVNDR-AGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKL--NIGPAIRKQQVGIP 117
Query: 132 RTSGPP 137
R+S P
Sbjct: 118 RSSIMP 123
>TAIR|locus:2086325 [details] [associations]
symbol:AT3G15010 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009693
GO:GO:0006952 GO:GO:0005730 GO:GO:0000166 GO:GO:0008219
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150 EMBL:AP000370
HSSP:P09651 KO:K12741 eggNOG:NOG300400 EMBL:AY063846 EMBL:AY091228
EMBL:AK316731 IPI:IPI00519744 RefSeq:NP_188119.1 RefSeq:NP_974317.1
UniGene:At.27179 ProteinModelPortal:Q9LKA4 SMR:Q9LKA4 IntAct:Q9LKA4
PaxDb:Q9LKA4 PRIDE:Q9LKA4 EnsemblPlants:AT3G15010.1
EnsemblPlants:AT3G15010.2 GeneID:820730 KEGG:ath:AT3G15010
TAIR:At3g15010 HOGENOM:HOG000090575 InParanoid:Q9LKA4 OMA:MGAQYGG
PhylomeDB:Q9LKA4 ProtClustDB:CLSN2685088 ArrayExpress:Q9LKA4
Genevestigator:Q9LKA4 Uniprot:Q9LKA4
Length = 404
Score = 137 (53.3 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 29/84 (34%), Positives = 47/84 (55%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ +R L T L+ FS++G++ E ++ D++T KSKGY F+ + D ALLAL+
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 105 MDHKNLDGRLIYVDIAKPGKDRFG 128
K +DGR+ +A G G
Sbjct: 136 PS-KKIDGRVTVTQLAASGNQGTG 158
Score = 117 (46.2 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 34/96 (35%), Positives = 49/96 (51%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
+I V N+PF L F A+G+V E L D++T KS+G+A Y + + A AL
Sbjct: 168 KIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALAD 227
Query: 105 MDHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQQ 140
K +DG+ + +A GK GG P G P+ Q
Sbjct: 228 -PVKVIDGKHLNCKLAVDGKK--GGKP---GMPQAQ 257
>DICTYBASE|DDB_G0275027 [details] [associations]
symbol:DDB_G0275027 "SRA stem-loop-interacting
RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
Uniprot:Q86I71
Length = 91
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 28/84 (33%), Positives = 53/84 (63%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
++I V LP++ + L+ FS FG + + +V D +TK+SKG+ F+Q+ S++ A+
Sbjct: 4 NKIFVTRLPWSVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKESVQNAIN 63
Query: 104 SMDHKNLDGRLIYVD--IAKPGKD 125
S D++ ++GR + V+ +AK K+
Sbjct: 64 S-DNE-INGRKLVVNEALAKDFKE 85
>UNIPROTKB|I3LLT9 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00600000084414 EMBL:CU915556
Ensembl:ENSSSCT00000027399 OMA:SINGKEM Uniprot:I3LLT9
Length = 94
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 26/70 (37%), Positives = 44/70 (62%)
Query: 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALL 100
P S + V NLPF+ + L + FS +G+V +V ++KD+ T+KSKG AFI + +D A
Sbjct: 7 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQN 66
Query: 101 ALESMDHKNL 110
++++K +
Sbjct: 67 CTRAINNKQV 76
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 30/101 (29%), Positives = 54/101 (53%)
Query: 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLA 101
+A + V ++ + E L++ FS G V V ++ D T +SKG +++ ++++A A
Sbjct: 1 MAKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEA 60
Query: 102 LESMDHKNLDGRLIYVDIAKPGKDRFGGYPRTSGP-PKQQP 141
+E++D L R+I V +A+P K PR P P +P
Sbjct: 61 IETLDGALLRNRVITVSVARPQKQATRPAPRRGKPGPGGRP 101
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 30/101 (29%), Positives = 54/101 (53%)
Query: 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLA 101
+A + V ++ + E L++ FS G V V ++ D T +SKG +++ ++++A A
Sbjct: 1 MAKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEA 60
Query: 102 LESMDHKNLDGRLIYVDIAKPGKDRFGGYPRTSGP-PKQQP 141
+E++D L R+I V +A+P K PR P P +P
Sbjct: 61 IETLDGALLRNRVITVSVARPQKQATRPAPRRGKPGPGGRP 101
>UNIPROTKB|C1JGV6 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:DAAA02005516 EMBL:DAAA02005517 EMBL:DAAA02005518 EMBL:FJ623266
IPI:IPI00867153 UniGene:Bt.25777 Ensembl:ENSBTAT00000044801
Uniprot:C1JGV6
Length = 295
Score = 134 (52.2 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 40/123 (32%), Positives = 62/123 (50%)
Query: 18 NSLTNRENPCFRT-FNLRASLSNYP--LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVK 74
+SL+ NP N S Y + +RI V + F T+E+ L+K FS +G V EVK
Sbjct: 16 DSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVK 75
Query: 75 LVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKDRFGGYPRTS 134
+V D SKGY F+ + +Q+DA L+ + N + + +I + + G PR+S
Sbjct: 76 IVNDR-AGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKL--NIGPAIRKQQVGIPRSS 132
Query: 135 GPP 137
P
Sbjct: 133 IMP 135
>UNIPROTKB|F1P6I8 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:AAEX03017986 Ensembl:ENSCAFT00000037605 Uniprot:F1P6I8
Length = 295
Score = 134 (52.2 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 40/123 (32%), Positives = 62/123 (50%)
Query: 18 NSLTNRENPCFRT-FNLRASLSNYP--LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVK 74
+SL+ NP N S Y + +RI V + F T+E+ L+K FS +G V EVK
Sbjct: 16 DSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVK 75
Query: 75 LVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKDRFGGYPRTS 134
+V D SKGY F+ + +Q+DA L+ + N + + +I + + G PR+S
Sbjct: 76 IVNDR-AGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKL--NIGPAIRKQQVGIPRSS 132
Query: 135 GPP 137
P
Sbjct: 133 IMP 135
>UNIPROTKB|F1SI86 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:CU469305 Ensembl:ENSSSCT00000017510 Uniprot:F1SI86
Length = 295
Score = 134 (52.2 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 40/123 (32%), Positives = 62/123 (50%)
Query: 18 NSLTNRENPCFRT-FNLRASLSNYP--LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVK 74
+SL+ NP N S Y + +RI V + F T+E+ L+K FS +G V EVK
Sbjct: 16 DSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVK 75
Query: 75 LVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKDRFGGYPRTS 134
+V D SKGY F+ + +Q+DA L+ + N + + +I + + G PR+S
Sbjct: 76 IVNDR-AGVSKGYGFVTFETQEDAQRILQEAEKLNYKDKKL--NIGPAIRKQQVGIPRSS 132
Query: 135 GPP 137
P
Sbjct: 133 IMP 135
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 137 (53.3 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+P+ E L+ FS G V +LV D T K KGY F +Y Q+ AL A+ ++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ + GR + VD A K++
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 135 (52.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 31/106 (29%), Positives = 53/106 (50%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
+ ++V LP + L+ FS+ GEV KL++D++ S GY F+ Y + +DA A+
Sbjct: 34 TNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIS 93
Query: 104 SMDHKNLDGRLIYVDIAKPGKDRF-GGYPRTSGPPKQQPLSEQDEV 148
+++ L + I V A+P D SG PK + +E+
Sbjct: 94 TLNGLRLQSKTIKVSYARPSSDSIKDANLYISGLPKTMTQKDVEEM 139
Score = 107 (42.7 bits), Expect = 0.00014, P = 0.00014
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
I + NL E L + F FG V VK+++D T K KG+ F+ T ++A +A+ S+
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 106 DHKNLDGRLIYV 117
+ L +++ V
Sbjct: 320 NGYRLGDKILQV 331
>UNIPROTKB|E2QRU8 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR022023 Pfam:PF12220 Ensembl:ENSCAFT00000005969
Uniprot:E2QRU8
Length = 386
Score = 136 (52.9 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 29/90 (32%), Positives = 49/90 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V + + T E L++EF +G + + +V + + K +GYAFI+Y + D A +
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 106 DHKNLDGRLIYVDIAKPGKDRFGGYPRTSG 135
D K +DGR + VD+ + G+ G PR G
Sbjct: 165 DGKKIDGRRVLVDVER-GRTVKGWRPRRLG 193
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 138 (53.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALL 100
P + + V NLPF+ +E ++ + F G V ++L D + + KG+ ++QY+S D+A
Sbjct: 381 PESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARK 440
Query: 101 ALESMDHKNLDGRLIYVDIAKPGKDRFGG 129
A + +DGR I +D + P + GG
Sbjct: 441 AYNELQGAEIDGRPIRLDFSTPRANNGGG 469
Score = 134 (52.2 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102
++ + V NL + E L +EF FGE++ +++ + T +S+G+ ++++T+ DA A
Sbjct: 276 SANLFVGNLSWNVTEEWLHQEFEQFGELS-ARIMTERDTGRSRGFGYVEFTNAADAAKAY 334
Query: 103 ESMDHKNLDGRLIYVDIA--KPGKDRFGGY 130
E+M +DGR I +D A +P GG+
Sbjct: 335 EAMKEHEIDGRKINLDYATGRPANKDQGGF 364
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 139 (54.0 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 27/83 (32%), Positives = 50/83 (60%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
+ I V+N+ E + +K FS FG++ + L KD+ KSKG+ F+ + + A+ A+E
Sbjct: 233 TNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQ-DGKSKGFGFVNFEDHESAVKAVE 291
Query: 104 SMDHKNLDGRLIYVDIAKPGKDR 126
++ K ++G+ IYV A+ ++R
Sbjct: 292 ELNDKEINGQKIYVGRAQKKRER 314
Score = 129 (50.5 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 25/76 (32%), Positives = 47/76 (61%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V+NL T L++EF FG + K++ DE KSKG+ F+ +T+ ++A A+ M
Sbjct: 338 LFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDE-AGKSKGFGFVCFTTPEEATKAITEM 396
Query: 106 DHKNLDGRLIYVDIAK 121
+ + ++G+ +YV +A+
Sbjct: 397 NTRMINGKPLYVALAQ 412
Score = 120 (47.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 22/71 (30%), Positives = 45/71 (63%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102
++ + V L + +E TL + FS G+V+ +++ +D ++KKS GYA++ Y +D A+
Sbjct: 51 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAI 110
Query: 103 ESMDHKNLDGR 113
E +++ ++GR
Sbjct: 111 EELNYNPIEGR 121
>UNIPROTKB|E1BQR8 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0030895 "apolipoprotein B mRNA editing enzyme
complex" evidence=IEA] [GO:0050821 "protein stabilization"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720 GO:GO:0050821
GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:AADN02035165
IPI:IPI00576681 ProteinModelPortal:E1BQR8
Ensembl:ENSGALT00000005974 Uniprot:E1BQR8
Length = 540
Score = 138 (53.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 34/91 (37%), Positives = 54/91 (59%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ VRNL +T E T++KEF+ +K E KK + YAF+ + ++DA+ A++++
Sbjct: 233 LYVRNLMLSTTEETIEKEFN------NIKQGAVERVKKIRDYAFVHFNKREDAVHAMKAL 286
Query: 106 DHKNLDGRLIYVDIAKP-GKDRFGGYPRTSG 135
+ K LDG I V +AKP KD + Y R +G
Sbjct: 287 NGKVLDGSPIEVTLAKPVDKDSYVRYTRGTG 317
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 139 (54.0 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 35/103 (33%), Positives = 56/103 (54%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
+ + ++NL + LQ FS FG VK++ DE + KSKG+ F+ + +DA A++
Sbjct: 191 TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVD 249
Query: 104 SMDHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQ-QPLSEQ 145
M+ K+L+G+ IYV A+ +R G KQ +P EQ
Sbjct: 250 EMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQ 292
Score = 131 (51.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
I V+NL + TL FSAFG + K+V DE SKGY F+ + +Q++A A+E M
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKM 158
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ L+ R ++V K +DR
Sbjct: 159 NGMFLNDRKVFVGRFKSRRDR 179
>UNIPROTKB|F1SD00 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:CT954228
Ensembl:ENSSSCT00000011416 Uniprot:F1SD00
Length = 546
Score = 138 (53.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAF--GEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
+ VRNL +T E ++KEF+ G V VK ++D YAF+ +T+++DA+ A++
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD--------YAFVHFTNREDAVEAMK 284
Query: 104 SMDHKNLDGRLIYVDIAKP-GKDRFGGYPRTSG 135
+++ K LDG I V +AKP KD + Y R +G
Sbjct: 285 ALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTG 317
>UNIPROTKB|Q66II8 [details] [associations]
symbol:snrnp70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0043484 "regulation of RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0060218 GO:GO:0043484
GO:GO:0000398 eggNOG:COG0724 KO:K11093 InterPro:IPR022023
Pfam:PF12220 CTD:6625 GeneTree:ENSGT00530000063750
OrthoDB:EOG4CJVJ7 HOVERGEN:HBG012300 EMBL:CR760195 EMBL:BC081331
RefSeq:NP_001008126.1 UniGene:Str.26779 ProteinModelPortal:Q66II8
STRING:Q66II8 Ensembl:ENSXETT00000049555 GeneID:493488
KEGG:xtr:493488 Xenbase:XB-GENE-992818 InParanoid:Q66II8
OMA:RHDKYDR Bgee:Q66II8 Uniprot:Q66II8
Length = 471
Score = 137 (53.3 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 29/90 (32%), Positives = 50/90 (55%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V + + T E L++EF +G + + +V ++ + K +GYAFI+Y + D A +
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 106 DHKNLDGRLIYVDIAKPGKDRFGGYPRTSG 135
D K +DGR + VD+ + G+ G PR G
Sbjct: 165 DGKKIDGRRVLVDVER-GRTVKGWRPRRLG 193
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 137 (53.3 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+P+ E L+ FS G V +LV D T K KGY F +Y Q+ AL A+ ++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ + GR + VD A K++
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>TAIR|locus:2103670 [details] [associations]
symbol:UBA2A "UBP1-associated protein 2A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0017091 "AU-rich element
binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=TAS] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002686
GO:GO:0009693 GO:GO:0006952 GO:GO:0009738 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0010150 GO:GO:0017091
GO:GO:0048255 EMBL:AL390921 HSSP:Q14103 KO:K12741
ProtClustDB:CLSN2683657 EMBL:AF367280 EMBL:AY037245 EMBL:AY091040
EMBL:AY117351 EMBL:AY133549 EMBL:BT006368 EMBL:AJ439404
IPI:IPI00547983 PIR:T51274 RefSeq:NP_001190109.1
RefSeq:NP_001190110.1 RefSeq:NP_567042.1 RefSeq:NP_850710.1
RefSeq:NP_850711.1 UniGene:At.9845 SMR:Q9LES2 IntAct:Q9LES2
STRING:Q9LES2 EnsemblPlants:AT3G56860.1 EnsemblPlants:AT3G56860.2
EnsemblPlants:AT3G56860.3 EnsemblPlants:AT3G56860.4
EnsemblPlants:AT3G56860.5 GeneID:824853 KEGG:ath:AT3G56860
TAIR:At3g56860 InParanoid:Q9LES2 OMA:ADEDPVH Genevestigator:Q9LES2
Uniprot:Q9LES2
Length = 478
Score = 137 (53.3 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 38/110 (34%), Positives = 54/110 (49%)
Query: 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALL 100
P+ +I V L + T TL + F +GE+ + K V D+I+ KSKGY FI Y S+ A
Sbjct: 137 PVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARN 196
Query: 101 ALESMDHKNLDGRLIYVDIAKPGKDRFGGYPRTSGP---PKQQPLSEQDE 147
AL+ K + R+ +A G FGG P + P Q SE +
Sbjct: 197 ALKQ-PQKKIGSRMTACQLASKGPV-FGGAPIAAAAVSAPAQHSNSEHTQ 244
Score = 111 (44.1 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 32/101 (31%), Positives = 47/101 (46%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
+I V N+ L FS FGE+ E L D+ T + KG+ Y S + A ALE
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Query: 105 MDHKNLDGRLIY----VDIAKPGKDRFGGY-PRTSGPPKQQ 140
HK +G +++ +D KPGK + + P P+ Q
Sbjct: 306 -PHKTFEGHILHCQKAIDGPKPGKQQQHHHNPHAYNNPRYQ 345
>RGD|1559527 [details] [associations]
symbol:Boll "bol, boule-like (Drosophila)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0007126 "meiosis"
evidence=IEA;ISO] [GO:0008494 "translation activator activity"
evidence=IEA;ISO] [GO:0045948 "positive regulation of translational
initiation" evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559527
GO:GO:0007126 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0008494 CTD:66037 OrthoDB:EOG4MPHQQ GO:GO:0045948
GeneTree:ENSGT00530000063480 EMBL:CH473965 EMBL:AC103419
EMBL:AC122091 IPI:IPI00884580 RefSeq:NP_001106841.1
RefSeq:XP_003750748.1 UniGene:Rn.145717 Ensembl:ENSRNOT00000021299
GeneID:100911373 GeneID:501143 KEGG:rno:100911373 KEGG:rno:501143
UCSC:RGD:1559527 NextBio:708414 Uniprot:D4ACT7
Length = 293
Score = 133 (51.9 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 34/96 (35%), Positives = 53/96 (55%)
Query: 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLA 101
+ +RI V + F T+E+ L+K FS +G V EVK+V D SKGY FI + +Q+DA
Sbjct: 43 IPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQEDAQKI 101
Query: 102 LESMDHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPP 137
L+ + N + + +I + + G PR+S P
Sbjct: 102 LQEAEKLNYKDKKL--NIGPAIRKQQVGIPRSSIMP 135
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 39/111 (35%), Positives = 54/111 (48%)
Query: 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEV-KLVKDEITKKSKGYAFIQYTSQDD 97
N + + I + NL E L FSAFG + + K+++D T SKGYAFI + S D
Sbjct: 52 NLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDA 111
Query: 98 ALLALESMDHKNLDGRLIYVDIA--KPGKDRFGGYPRTSGPPKQQPLSEQD 146
+ A+E+M+ + L R I V A K K G Q PLS+ D
Sbjct: 112 SDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQAD 162
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 139 (54.0 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 35/108 (32%), Positives = 59/108 (54%)
Query: 25 NPCFRTFNLRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKS 84
+P ++ N+ A + + VR L T E TL++ F G ++ ++V D T S
Sbjct: 532 SPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSIS-ARIVTDRDTGSS 588
Query: 85 KGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKP-GK-DRFGGY 130
KG+ F+ ++S +DA A E+M+ +DG + +D AKP G+ R GG+
Sbjct: 589 KGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGEFQRGGGF 636
Score = 109 (43.4 bits), Expect = 0.00017, P = 0.00017
Identities = 23/77 (29%), Positives = 45/77 (58%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
++V NL + E TLQ+ F + +K+ ++ + KGYAF+++ + +DA AL S
Sbjct: 461 LIVNNLSYAASEETLQELFK---KATSIKMPQNN-QGRPKGYAFVEFPTAEDAKEALNSC 516
Query: 106 DHKNLDGRLIYVDIAKP 122
++ ++GR I ++ + P
Sbjct: 517 NNTEIEGRAIRLEFSSP 533
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 139 (54.0 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 35/108 (32%), Positives = 59/108 (54%)
Query: 25 NPCFRTFNLRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKS 84
+P ++ N+ A + + VR L T E TL++ F G ++ ++V D T S
Sbjct: 534 SPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSIS-ARIVTDRDTGSS 590
Query: 85 KGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKP-GK-DRFGGY 130
KG+ F+ ++S +DA A E+M+ +DG + +D AKP G+ R GG+
Sbjct: 591 KGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGEFQRGGGF 638
Score = 109 (43.4 bits), Expect = 0.00017, P = 0.00017
Identities = 23/77 (29%), Positives = 45/77 (58%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
++V NL + E TLQ+ F + +K+ ++ + KGYAF+++ + +DA AL S
Sbjct: 463 LIVNNLSYAASEETLQELFK---KATSIKMPQNN-QGRPKGYAFVEFPTAEDAKEALNSC 518
Query: 106 DHKNLDGRLIYVDIAKP 122
++ ++GR I ++ + P
Sbjct: 519 NNTEIEGRAIRLEFSSP 535
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 139 (54.0 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 35/108 (32%), Positives = 59/108 (54%)
Query: 25 NPCFRTFNLRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKS 84
+P ++ N+ A + + VR L T E TL++ F G ++ ++V D T S
Sbjct: 534 SPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSIS-ARIVTDRDTGSS 590
Query: 85 KGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKP-GK-DRFGGY 130
KG+ F+ ++S +DA A E+M+ +DG + +D AKP G+ R GG+
Sbjct: 591 KGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGEFQRGGGF 638
Score = 109 (43.4 bits), Expect = 0.00017, P = 0.00017
Identities = 23/77 (29%), Positives = 45/77 (58%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
++V NL + E TLQ+ F + +K+ ++ + KGYAF+++ + +DA AL S
Sbjct: 463 LIVNNLSYAASEETLQELFK---KATSIKMPQNN-QGRPKGYAFVEFPTAEDAKEALNSC 518
Query: 106 DHKNLDGRLIYVDIAKP 122
++ ++GR I ++ + P
Sbjct: 519 NNTEIEGRAIRLEFSSP 535
>UNIPROTKB|F2Z2G3 [details] [associations]
symbol:BOLL "Protein boule-like" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011997
HGNC:HGNC:14273 IPI:IPI01018166 ProteinModelPortal:F2Z2G3
SMR:F2Z2G3 Ensembl:ENST00000430004 OMA:YQAPAQC ArrayExpress:F2Z2G3
Bgee:F2Z2G3 Uniprot:F2Z2G3
Length = 333
Score = 134 (52.2 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 41/126 (32%), Positives = 62/126 (49%)
Query: 15 MFANSLTNRENPCFRT-FNLRASLSNYP--LASRIMVRNLPFTTHEHTLQKEFSAFGEVA 71
M +SL+ NP N S Y + +RI V + F T+E L+K FS +G V
Sbjct: 1 MQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVK 60
Query: 72 EVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKDRFGGYP 131
EVK+V D SKGY F+ + +Q+DA L+ + N + + +I + + G P
Sbjct: 61 EVKIVNDR-AGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKL--NIGPAIRKQQVGIP 117
Query: 132 RTSGPP 137
R+S P
Sbjct: 118 RSSIMP 123
>UNIPROTKB|E1B7G9 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
EMBL:DAAA02058697 EMBL:DAAA02058698 IPI:IPI01002256
RefSeq:XP_003587913.1 ProteinModelPortal:E1B7G9
Ensembl:ENSBTAT00000033157 GeneID:100336715 KEGG:bta:100336715
Uniprot:E1B7G9
Length = 595
Score = 138 (53.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAF--GEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
+ VRNL +T E ++KEF+ G V VK ++D YAF+ +T+++DA+ A++
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD--------YAFVHFTNREDAVEAMK 284
Query: 104 SMDHKNLDGRLIYVDIAKP-GKDRFGGYPRTSG 135
+++ K LDG I V +AKP KD + Y R +G
Sbjct: 285 ALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTG 317
>UNIPROTKB|P08621 [details] [associations]
symbol:SNRNP70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 EMBL:CH471177
GO:GO:0043484 GO:GO:0000398 eggNOG:COG0724 PDB:3CW1 PDB:3PGW
PDBsum:3CW1 PDBsum:3PGW KO:K11093 OMA:KKSRGYL InterPro:IPR022023
Pfam:PF12220 CTD:6625 OrthoDB:EOG4CJVJ7 EMBL:X04654 EMBL:X06814
EMBL:X06815 EMBL:X06817 EMBL:X07402 EMBL:X06816 EMBL:X06812
EMBL:X06811 EMBL:X07401 EMBL:X07403 EMBL:M22636 EMBL:M57939
EMBL:M57929 EMBL:M57930 EMBL:M57932 EMBL:M57934 EMBL:M57937
EMBL:M57935 EMBL:AK096783 EMBL:X84841 EMBL:AL117507 EMBL:BC001315
IPI:IPI00219483 IPI:IPI00219484 IPI:IPI00219485 IPI:IPI00290204
PIR:A25707 PIR:S00674 RefSeq:NP_003080.2 UniGene:Hs.467097 PDB:2L5I
PDB:2L5J PDBsum:2L5I PDBsum:2L5J ProteinModelPortal:P08621
SMR:P08621 DIP:DIP-29406N IntAct:P08621 MINT:MINT-5004037
STRING:P08621 PhosphoSite:P08621 DMDM:13635663 PaxDb:P08621
PRIDE:P08621 Ensembl:ENST00000221448 Ensembl:ENST00000401730
Ensembl:ENST00000544278 GeneID:6625 KEGG:hsa:6625 UCSC:uc002pmk.3
GeneCards:GC19P049588 HGNC:HGNC:11150 HPA:CAB001718 MIM:180740
neXtProt:NX_P08621 PharmGKB:PA35992 InParanoid:P08621
ChiTaRS:SNRNP70 EvolutionaryTrace:P08621 GenomeRNAi:6625
NextBio:25805 PMAP-CutDB:P08621 ArrayExpress:P08621 Bgee:P08621
Genevestigator:P08621 GermOnline:ENSG00000104852 Uniprot:P08621
Length = 437
Score = 136 (52.9 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 29/90 (32%), Positives = 49/90 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V + + T E L++EF +G + + +V + + K +GYAFI+Y + D A +
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 106 DHKNLDGRLIYVDIAKPGKDRFGGYPRTSG 135
D K +DGR + VD+ + G+ G PR G
Sbjct: 165 DGKKIDGRRVLVDVER-GRTVKGWRPRRLG 193
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 137 (53.3 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+P+ E L+ FS G V +LV D T K KGY F +Y Q+ AL A+ ++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ + GR + VD A K++
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|Q1RMR2 [details] [associations]
symbol:SNRNP70 "U1 small nuclear ribonucleoprotein 70 kDa"
species:9913 "Bos taurus" [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0043484 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000236289 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 EMBL:BC114762 IPI:IPI00711491
RefSeq:NP_001069514.1 UniGene:Bt.12748 ProteinModelPortal:Q1RMR2
STRING:Q1RMR2 PRIDE:Q1RMR2 Ensembl:ENSBTAT00000002587 GeneID:535113
KEGG:bta:535113 CTD:6625 GeneTree:ENSGT00530000063750
InParanoid:Q1RMR2 OrthoDB:EOG4CJVJ7 NextBio:20876626
ArrayExpress:Q1RMR2 Uniprot:Q1RMR2
Length = 439
Score = 136 (52.9 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 29/90 (32%), Positives = 49/90 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V + + T E L++EF +G + + +V + + K +GYAFI+Y + D A +
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 106 DHKNLDGRLIYVDIAKPGKDRFGGYPRTSG 135
D K +DGR + VD+ + G+ G PR G
Sbjct: 165 DGKKIDGRRVLVDVER-GRTVKGWRPRRLG 193
>UNIPROTKB|F6V5G7 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 Ensembl:ENSCAFT00000005969
EMBL:AAEX03000805 RefSeq:XP_541503.2 ProteinModelPortal:F6V5G7
GeneID:484388 KEGG:cfa:484388 Uniprot:F6V5G7
Length = 439
Score = 136 (52.9 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 29/90 (32%), Positives = 49/90 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V + + T E L++EF +G + + +V + + K +GYAFI+Y + D A +
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 106 DHKNLDGRLIYVDIAKPGKDRFGGYPRTSG 135
D K +DGR + VD+ + G+ G PR G
Sbjct: 165 DGKKIDGRRVLVDVER-GRTVKGWRPRRLG 193
>DICTYBASE|DDB_G0280529 [details] [associations]
symbol:cstf2 "cleavage stimulation factor 64 kDa
subunit" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0280529 GO:GO:0005634 GO:GO:0000166
GenomeReviews:CM000152_GR Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 EMBL:AAFI02000036 eggNOG:COG0724 GO:GO:0006379
KO:K14407 InterPro:IPR025742 Pfam:PF14327 RefSeq:XP_641214.1
ProteinModelPortal:Q54V94 EnsemblProtists:DDB0233706 GeneID:8622595
KEGG:ddi:DDB_G0280529 InParanoid:Q54V94 Uniprot:Q54V94
Length = 541
Score = 125 (49.1 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLA 101
++ + V N+P+ +E L + FS G+V +L++D+ +KKSKGY F +Y + D+AL A
Sbjct: 1 MSKSVFVGNIPYEANEKDLIEIFSGVGKVVSFRLLEDKDSKKSKGYGFCEYENVDNALSA 60
Query: 102 LESMDHKNLDGRLIYVDIA 120
+ + R++ V A
Sbjct: 61 IRNYMLFTFGNRVLRVSYA 79
Score = 34 (17.0 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 134 SGPPKQQPLSEQDE 147
S P QQP +Q +
Sbjct: 247 SNPKNQQPQQQQQQ 260
>MGI|MGI:98341 [details] [associations]
symbol:Snrnp70 "small nuclear ribonucleoprotein 70 (U1)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98341 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0043484 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000236289 KO:K11093 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 CTD:6625
GeneTree:ENSGT00530000063750 OrthoDB:EOG4CJVJ7 ChiTaRS:SNRNP70
EMBL:AK133115 EMBL:AK146729 EMBL:X15769 EMBL:X15770 EMBL:X15771
EMBL:X15772 EMBL:X15774 EMBL:X15775 EMBL:X15776 IPI:IPI00230541
IPI:IPI00625105 PIR:S04336 PIR:S04824 RefSeq:NP_033250.3
UniGene:Mm.216386 ProteinModelPortal:Q62376 SMR:Q62376
MINT:MINT-1868298 STRING:Q62376 PhosphoSite:Q62376 PaxDb:Q62376
PRIDE:Q62376 Ensembl:ENSMUST00000074575 GeneID:20637 KEGG:mmu:20637
HOVERGEN:HBG094947 InParanoid:Q62376 NextBio:299035 Bgee:Q62376
Genevestigator:Q62376 GermOnline:ENSMUSG00000063511 Uniprot:Q62376
Length = 448
Score = 136 (52.9 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 29/90 (32%), Positives = 49/90 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V + + T E L++EF +G + + +V + + K +GYAFI+Y + D A +
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 106 DHKNLDGRLIYVDIAKPGKDRFGGYPRTSG 135
D K +DGR + VD+ + G+ G PR G
Sbjct: 165 DGKKIDGRRVLVDVER-GRTVKGWRPRRLG 193
>UNIPROTKB|I3LNE5 [details] [associations]
symbol:SNRNP70 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 OMA:KKSRGYL
InterPro:IPR022023 Pfam:PF12220 GeneTree:ENSGT00530000063750
EMBL:FP102974 Ensembl:ENSSSCT00000022304 Uniprot:I3LNE5
Length = 452
Score = 136 (52.9 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 29/90 (32%), Positives = 49/90 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V + + T E L++EF +G + + +V + + K +GYAFI+Y + D A +
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 106 DHKNLDGRLIYVDIAKPGKDRFGGYPRTSG 135
D K +DGR + VD+ + G+ G PR G
Sbjct: 165 DGKKIDGRRVLVDVER-GRTVKGWRPRRLG 193
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 138 (53.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+P+ E L+ FS G V +LV D T K KGY F +Y Q+ AL A+ ++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ + GR + VD A K++
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 138 (53.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+P+ E L+ FS G V +LV D T K KGY F +Y Q+ AL A+ ++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ + GR + VD A K++
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 137 (53.3 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 31/105 (29%), Positives = 56/105 (53%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
+ + ++N + +L++ FS FG+ VK+++D KSKG+ F+ Y +DA A+E
Sbjct: 93 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVE 151
Query: 104 SMDHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQQPLSEQDEV 148
M+ K + G++I+V A+ +R R KQ+ +S V
Sbjct: 152 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV 196
Score = 122 (48.0 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ ++NL + L FSAFG + K+V DE SKGYAF+ + +Q+ A A+E M
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 60
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ L+ R ++V K K+R
Sbjct: 61 NGMLLNDRKVFVGRFKSRKER 81
Score = 118 (46.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 25/90 (27%), Positives = 53/90 (58%)
Query: 37 LSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQD 96
+S Y + ++NL T + L+KEFS FG + K++ ++ +SKG+ F+ ++S +
Sbjct: 190 ISRYQ-GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPE 246
Query: 97 DALLALESMDHKNLDGRLIYVDIAKPGKDR 126
+A A+ M+ + + + +YV +A+ ++R
Sbjct: 247 EATKAVTEMNGRIVGSKPLYVALAQRKEER 276
>UNIPROTKB|F1S1L9 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
Uniprot:F1S1L9
Length = 551
Score = 137 (53.3 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+P+ E L+ FS G V +LV D T K KGY F +Y Q+ AL A+ ++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ + GR + VD A K++
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>FB|FBgn0260456 [details] [associations]
symbol:CG4806 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE013599 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:Q9V535
GeneTree:ENSGT00550000074976 KO:K14573 OMA:MHALECL ChiTaRS:CG33228
FlyBase:FBgn0260456 EMBL:BT023833 RefSeq:NP_611955.2
UniGene:Dm.2200 SMR:Q9W124 STRING:Q9W124 EnsemblMetazoa:FBtr0072332
GeneID:37948 KEGG:dme:Dmel_CG4806 UCSC:CG4806-RA InParanoid:Q9W124
GenomeRNAi:37948 NextBio:806205 Uniprot:Q9W124
Length = 657
Score = 138 (53.6 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 43/143 (30%), Positives = 72/143 (50%)
Query: 7 ATVSYPQPMFANSLTNRENPCFRTFNLRASLSN-YPLASRIMVRNLPFTTHEHTLQKEFS 65
A S QP + R NP F T L+ +R++VRN+ + + E +L++ F
Sbjct: 13 AAESQSQP--ETGVRKRRNP-FNTQRLKEEKERRQKKRARLIVRNISYKSTEDSLREHFG 69
Query: 66 AFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKD 125
+G + +V ++K K G AF+QY + + A A+ + + K L GR ++VD A GKD
Sbjct: 70 QWGTLEDVHILKRG-DGKLVGCAFVQYETINQATKAILNSNGKELLGRKVFVDWAL-GKD 127
Query: 126 RF-GGYPRTSGPPKQQPLSEQDE 147
+ P+ P +++P E E
Sbjct: 128 EYVSKNPKDEEPDEKKPKVEVKE 150
>UNIPROTKB|K7GQE7 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
Length = 555
Score = 137 (53.3 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+P+ E L+ FS G V +LV D T K KGY F +Y Q+ AL A+ ++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ + GR + VD A K++
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>FB|FBgn0032822 [details] [associations]
symbol:CG10466 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:COG0724 KO:K13107 GeneTree:ENSGT00600000084414 HSSP:P33240
RefSeq:NP_610003.1 UniGene:Dm.28254 ProteinModelPortal:Q9VIS0
SMR:Q9VIS0 IntAct:Q9VIS0 MINT:MINT-903544 STRING:Q9VIS0
PaxDb:Q9VIS0 PRIDE:Q9VIS0 EnsemblMetazoa:FBtr0081291
EnsemblMetazoa:FBtr0332178 GeneID:35268 KEGG:dme:Dmel_CG10466
UCSC:CG10466-RA FlyBase:FBgn0032822 InParanoid:Q9VIS0 OMA:YMEGCAP
OrthoDB:EOG4ZPCBP PhylomeDB:Q9VIS0 GenomeRNAi:35268 NextBio:792713
ArrayExpress:Q9VIS0 Bgee:Q9VIS0 Uniprot:Q9VIS0
Length = 154
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 31/89 (34%), Positives = 50/89 (56%)
Query: 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDAL 99
Y ++ I V P+T E L FS +GEV + L++D T KSKG+ F+ Y Q +
Sbjct: 30 YKDSAWIFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCFLCYEDQRSTV 89
Query: 100 LALESMDHKNLDGRLIYVD-IA--KPGKD 125
LA+++++ + R + VD +A KP K+
Sbjct: 90 LAVDNLNGIKILDRTLRVDHVADYKPPKE 118
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N PF T E L FS+ G++ V++V D T + +G+AFI++ + A A+E M
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 106 DHKNLDGRLIYVDIA 120
+ +GR + V++A
Sbjct: 67 NGAEFNGRPLRVNLA 81
>MGI|MGI:1919414 [details] [associations]
symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1919414 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
EMBL:AL672042 GeneTree:ENSGT00600000084414 CTD:51634
HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:AK076115 EMBL:AK168018
EMBL:BC026976 IPI:IPI00261255 RefSeq:NP_775552.1 UniGene:Mm.32561
ProteinModelPortal:Q8R0F5 SMR:Q8R0F5 STRING:Q8R0F5
PhosphoSite:Q8R0F5 PRIDE:Q8R0F5 Ensembl:ENSMUST00000033433
GeneID:209003 KEGG:mmu:209003 UCSC:uc009tct.1 InParanoid:A2AF74
NextBio:372506 Bgee:Q8R0F5 CleanEx:MM_RBMX2 Genevestigator:Q8R0F5
GermOnline:ENSMUSG00000031107 Uniprot:Q8R0F5
Length = 326
Score = 133 (51.9 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 38 SNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDD 97
S Y ++ I V LP+ E + FS +GE+ + LV+D+ T KSKG+ F+ Y Q
Sbjct: 30 SEYKHSAWIFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRS 89
Query: 98 ALLALESMDHKNLDGRLIYVD 118
+LA+++ + + GR I VD
Sbjct: 90 TVLAVDNFNGIKIKGRTIRVD 110
>UNIPROTKB|Q8HXM1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
Uniprot:Q8HXM1
Length = 572
Score = 137 (53.3 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+P+ E L+ FS G V +LV D T K KGY F +Y Q+ AL A+ ++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ + GR + VD A K++
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|K7GS58 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
Length = 572
Score = 137 (53.3 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+P+ E L+ FS G V +LV D T K KGY F +Y Q+ AL A+ ++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ + GR + VD A K++
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|E2RP40 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
KEGG:cfa:492015 Uniprot:E2RP40
Length = 577
Score = 137 (53.3 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+P+ E L+ FS G V +LV D T K KGY F +Y Q+ AL A+ ++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ + GR + VD A K++
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 137 (53.3 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+P+ E L+ FS G V +LV D T K KGY F +Y Q+ AL A+ ++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ + GR + VD A K++
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 137 (53.3 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+P+ E L+ FS G V +LV D T K KGY F +Y Q+ AL A+ ++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ + GR + VD A K++
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 137 (53.3 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+P+ E L+ FS G V +LV D T K KGY F +Y Q+ AL A+ ++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ + GR + VD A K++
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>ZFIN|ZDB-GENE-060824-3 [details] [associations]
symbol:a1cf "apobec1 complementation factor"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001159 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50137 SMART:SM00360
InterPro:IPR014720 ZFIN:ZDB-GENE-060824-3 GO:GO:0000166
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005622
GO:GO:0003725 EMBL:BX248126 IPI:IPI00486366
Ensembl:ENSDART00000010358 Bgee:E7F6B7 Uniprot:E7F6B7
Length = 588
Score = 137 (53.3 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAF--GEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
+ VRNL T E T++KEF++ G V VK ++D YAF+ ++ ++DA+ A+
Sbjct: 233 LYVRNLMLPTTEETIEKEFNSIKPGAVERVKKIRD--------YAFVHFSQREDAINAMN 284
Query: 104 SMDHKNLDGRLIYVDIAKP-GKDRFGGYPRTSG 135
+++ K +DG I V +AKP KD + Y R +G
Sbjct: 285 ALNGKVIDGSPIEVTLAKPVDKDSYVRYTRGTG 317
Score = 111 (44.1 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 31/109 (28%), Positives = 59/109 (54%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
S I V LP E L FG++ EV+++ D ++GYAF+ ++++ +A A++
Sbjct: 56 SEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMD-FNGNNRGYAFVTFSTKQEAKNAMK 114
Query: 104 SMDHKNL-DGRLIYVDIAKPGKDRF-GGYPRTSGPPKQQPLSEQDEVAD 150
+++ + +GRL+ V + F GG P+T +++ L+E +V D
Sbjct: 115 QLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTK--KREEILAEMKKVTD 161
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 137 (53.3 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+P+ E L+ FS G V +LV D T K KGY F +Y Q+ AL A+ ++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ + GR + VD A K++
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|F1MVI1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
Uniprot:F1MVI1
Length = 592
Score = 137 (53.3 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+P+ E L+ FS G V +LV D T K KGY F +Y Q+ AL A+ ++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ + GR + VD A K++
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|I3LE23 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
Length = 592
Score = 137 (53.3 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+P+ E L+ FS G V +LV D T K KGY F +Y Q+ AL A+ ++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ + GR + VD A K++
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>RGD|619834 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=ISO;ISS]
[GO:0003727 "single-stranded RNA binding" evidence=ISO;ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0004131 "cytosine
deaminase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005720 "nuclear heterochromatin" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=NAS;IMP]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;ISS;TAS] [GO:0050821 "protein stabilization"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
RGD:619834 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821 GO:GO:0000166
CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895 GO:GO:0005720
GO:GO:0004131 GO:GO:0003729 GO:GO:0003727 GO:GO:0016554
GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 OrthoDB:EOG4SXNCC EMBL:AF290984 EMBL:AF442133
EMBL:AF442134 EMBL:AF442135 EMBL:AY028945 IPI:IPI00382071
IPI:IPI00679207 IPI:IPI00679214 IPI:IPI00679221 RefSeq:NP_596891.1
UniGene:Rn.162520 ProteinModelPortal:Q923K9 SMR:Q923K9
STRING:Q923K9 PhosphoSite:Q923K9 PRIDE:Q923K9
Ensembl:ENSRNOT00000052256 GeneID:170912 KEGG:rno:170912
UCSC:RGD:619834 eggNOG:NOG246793 InParanoid:Q923K9 OMA:HAGVHHI
NextBio:621377 ArrayExpress:Q923K9 Genevestigator:Q923K9
Uniprot:Q923K9
Length = 594
Score = 137 (53.3 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 34/93 (36%), Positives = 57/93 (61%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAF--GEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
+ VRNL +T E ++KEF++ G V VK ++D YAF+ +++++DA+ A++
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD--------YAFVHFSNREDAVEAMK 284
Query: 104 SMDHKNLDGRLIYVDIAKP-GKDRFGGYPRTSG 135
+++ K LDG I V +AKP KD + Y R +G
Sbjct: 285 ALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTG 317
>UNIPROTKB|F1LNL0 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 RGD:619834 GO:GO:0050821 GO:GO:0000166
GO:GO:0030895 GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
IPI:IPI00679207 Ensembl:ENSRNOT00000067643 ArrayExpress:F1LNL0
Uniprot:F1LNL0
Length = 594
Score = 137 (53.3 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 34/93 (36%), Positives = 57/93 (61%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAF--GEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
+ VRNL +T E ++KEF++ G V VK ++D YAF+ +++++DA+ A++
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD--------YAFVHFSNREDAVEAMK 284
Query: 104 SMDHKNLDGRLIYVDIAKP-GKDRFGGYPRTSG 135
+++ K LDG I V +AKP KD + Y R +G
Sbjct: 285 ALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTG 317
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 138 (53.6 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V+ L T E TL++ F G V ++V D T SKG+ F+ + S++DA A E+M
Sbjct: 574 LFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 630
Query: 106 DHKNLDGRLIYVDIAKP-GKDRFGG 129
+ +DG + +D AKP G+ FGG
Sbjct: 631 EDGEIDGNKVTLDWAKPKGEGGFGG 655
Score = 115 (45.5 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 26/77 (33%), Positives = 48/77 (62%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+++ NL ++ E TLQ+ F + +K+ +++ KSKGYAFI++ S +DA AL S
Sbjct: 488 LVLSNLSYSATEETLQEVFE---KATFIKVPQNQ-NGKSKGYAFIEFASFEDAKEALNSC 543
Query: 106 DHKNLDGRLIYVDIAKP 122
+ + ++GR I +++ P
Sbjct: 544 NKREIEGRAIRLELQGP 560
Score = 105 (42.0 bits), Expect = 0.00094, P = 0.00094
Identities = 35/105 (33%), Positives = 51/105 (48%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102
A ++ +NLP+ + L KE F + AE++LV + KSKG A+I++ ++ DA
Sbjct: 392 ARTLLAKNLPYKVTQDEL-KE--VFEDAAEIRLVSKD--GKSKGIAYIEFKTEADAEKTF 446
Query: 103 ESMDHKNLDGR---LIYVDIAKPGKDRFGGYPRT-SGPPKQQPLS 143
E +DGR L Y +D GG T SG K LS
Sbjct: 447 EEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLS 491
>MGI|MGI:1917115 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0004131
"cytosine deaminase activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005720 "nuclear heterochromatin" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=ISO]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;TAS] [GO:0050821 "protein stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 InterPro:IPR014720 MGI:MGI:1917115 GO:GO:0005783
GO:GO:0005737 GO:GO:0050821 GO:GO:0000166 CTD:29974
eggNOG:NOG258596 HOVERGEN:HBG051917 OMA:PGYAVPN GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:AY566862 EMBL:AY566863
EMBL:AY566864 EMBL:AC117816 EMBL:AC125019 EMBL:BC089622
IPI:IPI00357048 IPI:IPI00665782 IPI:IPI00667120
RefSeq:NP_001074543.1 UniGene:Mm.87538 ProteinModelPortal:Q5YD48
SMR:Q5YD48 STRING:Q5YD48 PhosphoSite:Q5YD48 PaxDb:Q5YD48
PRIDE:Q5YD48 Ensembl:ENSMUST00000075838 GeneID:69865 KEGG:mmu:69865
UCSC:uc008het.1 UCSC:uc008heu.1 UCSC:uc008hev.1
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 InParanoid:Q5YD48
OrthoDB:EOG4SXNCC NextBio:330501 Bgee:Q5YD48 CleanEx:MM_A1CF
Genevestigator:Q5YD48 GermOnline:ENSMUSG00000052595 Uniprot:Q5YD48
Length = 595
Score = 137 (53.3 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 34/93 (36%), Positives = 57/93 (61%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAF--GEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
+ VRNL +T E ++KEF++ G V VK ++D YAF+ +++++DA+ A++
Sbjct: 233 LYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD--------YAFVHFSNREDAVEAMK 284
Query: 104 SMDHKNLDGRLIYVDIAKP-GKDRFGGYPRTSG 135
+++ K LDG I V +AKP KD + Y R +G
Sbjct: 285 ALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTG 317
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 138 (53.6 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V+ L T E TL++ F G V ++V D T SKG+ F+ + S++DA A E+M
Sbjct: 575 LFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 631
Query: 106 DHKNLDGRLIYVDIAKP-GKDRFGG 129
+ +DG + +D AKP G+ FGG
Sbjct: 632 EDGEIDGNKVTLDWAKPKGEGGFGG 656
Score = 115 (45.5 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 26/77 (33%), Positives = 48/77 (62%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+++ NL ++ E TLQ+ F + +K+ +++ KSKGYAFI++ S +DA AL S
Sbjct: 489 LVLSNLSYSATEETLQEVFE---KATFIKVPQNQ-NGKSKGYAFIEFASFEDAKEALNSC 544
Query: 106 DHKNLDGRLIYVDIAKP 122
+ + ++GR I +++ P
Sbjct: 545 NKREIEGRAIRLELQGP 561
Score = 105 (42.0 bits), Expect = 0.00094, P = 0.00094
Identities = 35/105 (33%), Positives = 51/105 (48%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102
A ++ +NLP+ + L KE F + AE++LV + KSKG A+I++ ++ DA
Sbjct: 393 ARTLLAKNLPYKVTQDEL-KE--VFEDAAEIRLVSKD--GKSKGIAYIEFKTEADAEKTF 447
Query: 103 ESMDHKNLDGR---LIYVDIAKPGKDRFGGYPRT-SGPPKQQPLS 143
E +DGR L Y +D GG T SG K LS
Sbjct: 448 EEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLS 492
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 138 (53.6 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V+ L T E TL++ F G V ++V D T SKG+ F+ + S++DA A E+M
Sbjct: 576 LFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 632
Query: 106 DHKNLDGRLIYVDIAKP-GKDRFGG 129
+ +DG + +D AKP G+ FGG
Sbjct: 633 EDGEIDGNKVTLDWAKPKGEGGFGG 657
Score = 115 (45.5 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 26/77 (33%), Positives = 48/77 (62%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+++ NL ++ E TLQ+ F + +K+ +++ KSKGYAFI++ S +DA AL S
Sbjct: 490 LVLSNLSYSATEETLQEVFE---KATFIKVPQNQ-NGKSKGYAFIEFASFEDAKEALNSC 545
Query: 106 DHKNLDGRLIYVDIAKP 122
+ + ++GR I +++ P
Sbjct: 546 NKREIEGRAIRLELQGP 562
Score = 105 (42.0 bits), Expect = 0.00094, P = 0.00094
Identities = 35/105 (33%), Positives = 51/105 (48%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102
A ++ +NLP+ + L KE F + AE++LV + KSKG A+I++ ++ DA
Sbjct: 394 ARTLLAKNLPYKVTQDEL-KE--VFEDAAEIRLVSKD--GKSKGIAYIEFKTEADAEKTF 448
Query: 103 ESMDHKNLDGR---LIYVDIAKPGKDRFGGYPRT-SGPPKQQPLS 143
E +DGR L Y +D GG T SG K LS
Sbjct: 449 EEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLS 493
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 137 (53.3 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+P+ E L+ FS G V +LV D T K KGY F +Y Q+ AL A+ ++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ + GR + VD A K++
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 138 (53.6 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V+ L T E TL++ F G V ++V D T SKG+ F+ + S++DA A E+M
Sbjct: 577 LFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 633
Query: 106 DHKNLDGRLIYVDIAKP-GKDRFGG 129
+ +DG + +D AKP G+ FGG
Sbjct: 634 EDGEIDGNKVTLDWAKPKGEGGFGG 658
Score = 108 (43.1 bits), Expect = 0.00027, P = 0.00027
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+++ NL ++ E TLQ+ F E A V KSKGYAFI++ S +DA AL S
Sbjct: 491 LVLSNLSYSATEETLQEVF----EKATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSC 546
Query: 106 DHKNLDGRLIYVDIAKP 122
+ ++GR I +++ P
Sbjct: 547 NKMEIEGRTIRLELQGP 563
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 138 (53.6 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V+ L T E TL++ F G V ++V D T SKG+ F+ + S++DA A E+M
Sbjct: 574 LFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 630
Query: 106 DHKNLDGRLIYVDIAKP-GKDRFGG 129
+ +DG + +D AKP G+ FGG
Sbjct: 631 EDGEIDGNKVTLDWAKPKGEGGFGG 655
Score = 111 (44.1 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+++ NL ++ E TLQ+ F + +K+ +++ KSKGYAFI++ S +DA AL S
Sbjct: 488 LVLSNLSYSATEETLQEVFE---KATFIKVPQNQ-QGKSKGYAFIEFASFEDAKEALNSC 543
Query: 106 DHKNLDGRLIYVDIAKP 122
+ ++GR I +++ P
Sbjct: 544 NKMEIEGRTIRLELQGP 560
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 138 (53.6 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V+ L T E TL++ F G V ++V D T SKG+ F+ + S++DA A E+M
Sbjct: 578 LFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 634
Query: 106 DHKNLDGRLIYVDIAKP-GKDRFGG 129
+ +DG + +D AKP G+ FGG
Sbjct: 635 EDGEIDGNKVTLDWAKPKGEGGFGG 659
Score = 108 (43.1 bits), Expect = 0.00027, P = 0.00027
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+++ NL ++ E TLQ+ F E A V KSKGYAFI++ S +DA AL S
Sbjct: 492 LVLSNLSYSATEETLQEVF----EKATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSC 547
Query: 106 DHKNLDGRLIYVDIAKP 122
+ ++GR I +++ P
Sbjct: 548 NKMEIEGRTIRLELQGP 564
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 138 (53.6 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V+ L T E TL++ F G V ++V D T SKG+ F+ + S++DA A E+M
Sbjct: 579 LFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 635
Query: 106 DHKNLDGRLIYVDIAKP-GKDRFGG 129
+ +DG + +D AKP G+ FGG
Sbjct: 636 EDGEIDGNKVTLDWAKPKGEGGFGG 660
Score = 115 (45.5 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 26/77 (33%), Positives = 48/77 (62%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+++ NL ++ E TLQ+ F + +K+ +++ KSKGYAFI++ S +DA AL S
Sbjct: 493 LVLSNLSYSATEETLQEVFE---KATFIKVPQNQ-NGKSKGYAFIEFASFEDAKEALNSC 548
Query: 106 DHKNLDGRLIYVDIAKP 122
+ + ++GR I +++ P
Sbjct: 549 NKREIEGRAIRLELQGP 565
>UNIPROTKB|D4A5K7 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28 (Predicted),
isoform CRA_b" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1311336 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473959 EMBL:AC096035 GeneTree:ENSGT00550000074976 KO:K14573
CTD:55131 IPI:IPI00949364 RefSeq:NP_001101320.1 UniGene:Rn.50022
Ensembl:ENSRNOT00000064007 GeneID:312182 KEGG:rno:312182
NextBio:664628 Uniprot:D4A5K7
Length = 700
Score = 124 (48.7 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 35/113 (30%), Positives = 61/113 (53%)
Query: 22 NRENPCFRTFNLRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEIT 81
N E+P + +A +++ +R+++RNL F E L+ F+ +G V EV + +
Sbjct: 94 NSESPKKEPKHKKAKVADKK--ARLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKP-D 150
Query: 82 KKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKDRFGGYPRTS 134
K +G+AFIQ+ + +A AL+ + K + GR + VD A KD++ TS
Sbjct: 151 GKMRGFAFIQFKNLLEAGKALKGANMKEIKGRTVAVDWAV-AKDKYKDAQHTS 202
Score = 110 (43.8 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDA--LLALE 103
+ +RNL F + E L + FG++ V++V T+ SKG AF Q+ +Q+ A LA
Sbjct: 331 VFIRNLSFDSEEEALGEVLQQFGDLKYVRIVLHPDTEHSKGCAFAQFVTQEAAQKCLAAA 390
Query: 104 SMDHKN----LDGRLIYVDIA 120
S + + LDGR + VD+A
Sbjct: 391 SPETEGGGLKLDGRQLKVDLA 411
Score = 37 (18.1 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 126 RFGGYPRTSGPPKQQPLSEQDE 147
+ G P TS P K+Q +D+
Sbjct: 539 KMGSKPVTSKPQKEQKEQGKDK 560
Score = 35 (17.4 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 127 FGGYPRTSGPPKQQPLSE 144
F P T GP K+ P+ E
Sbjct: 501 FNNNPETFGPQKR-PIVE 517
>UNIPROTKB|Q8N7X1 [details] [associations]
symbol:RBMXL3 "RNA-binding motif protein, X-linked-like-3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL589786 EMBL:AK301904 EMBL:AK097568 IPI:IPI00167369
RefSeq:NP_001138818.1 UniGene:Hs.376008 ProteinModelPortal:Q8N7X1
SMR:Q8N7X1 PhosphoSite:Q8N7X1 PaxDb:Q8N7X1 PRIDE:Q8N7X1
Ensembl:ENST00000424776 GeneID:139804 KEGG:hsa:139804
UCSC:uc011mte.1 CTD:139804 GeneCards:GC0XP114423 HGNC:HGNC:26859
neXtProt:NX_Q8N7X1 PharmGKB:PA164725338 eggNOG:NOG331461
HOGENOM:HOG000112105 InParanoid:Q8N7X1 OMA:YEEYRGR
OrthoDB:EOG4ZPDV2 GenomeRNAi:139804 NextBio:84044 Bgee:Q8N7X1
CleanEx:HS_CXorf55 Genevestigator:Q8N7X1 Uniprot:Q8N7X1
Length = 1067
Score = 140 (54.3 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 34/102 (33%), Positives = 50/102 (49%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L T E L+ EF +G + +V L+KD T KS+G+AF+ + S DA A
Sbjct: 9 KLFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARD 68
Query: 105 MDHKNLDGRLIYV-DIAKPGKDRFGGYPRTSGPPKQQPLSEQ 145
M+ K LDG+ I V KP P T G + S +
Sbjct: 69 MNGKYLDGKAIMVAQTIKPAFKSSRWVPPTPGSGSRSRFSHR 110
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 137 (53.3 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+P+ E L+ FS G V +LV D T K KGY F +Y Q+ AL A+ ++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ + GR + VD A K++
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>SGD|S000006316 [details] [associations]
symbol:MRD1 "Essential conserved small ribosomal subunit
(40s) synthesis factor" species:4932 "Saccharomyces cerevisiae"
[GO:0005730 "nucleolus" evidence=IDA] [GO:0042134 "rRNA primary
transcript binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000472
"endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA
from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000006316 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BK006949
GO:GO:0030686 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0724
EMBL:U32445 GO:GO:0000480 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 OMA:VFREKNV PIR:S59777
RefSeq:NP_015437.1 ProteinModelPortal:Q06106 SMR:Q06106
DIP:DIP-6281N IntAct:Q06106 MINT:MINT-600745 STRING:Q06106
PaxDb:Q06106 PeptideAtlas:Q06106 EnsemblFungi:YPR112C GeneID:856228
KEGG:sce:YPR112C CYGD:YPR112c GeneTree:ENSGT00700000104575
NextBio:981470 Genevestigator:Q06106 GermOnline:YPR112C
Uniprot:Q06106
Length = 887
Score = 139 (54.0 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 32/104 (30%), Positives = 58/104 (55%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
R+ +RN+ +T+ E +K FS FGE+ EV + D T +SKG+A++ + +A+ A
Sbjct: 346 RLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVE 405
Query: 105 MDHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQQPLSEQDEV 148
+D + GRL+++ PG+++ + K PL +Q E+
Sbjct: 406 LDKQIFQGRLLHI---LPGEEK-KSHRLDEFDLKNMPLKKQKEL 445
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 137 (53.3 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 31/105 (29%), Positives = 56/105 (53%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
+ + ++N + +L++ FS FG+ VK+++D KSKG+ F+ Y +DA A+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVE 249
Query: 104 SMDHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQQPLSEQDEV 148
M+ K + G++I+V A+ +R R KQ+ +S V
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV 294
Score = 125 (49.1 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 28/85 (32%), Positives = 51/85 (60%)
Query: 33 LRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQY 92
+ A+ S+YP+AS + V +L E L ++FS G V +++ +D IT++S GYA++ +
Sbjct: 1 MNAAASSYPMAS-LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF 59
Query: 93 TSQDDALLALESMDHKNLDGRLIYV 117
DA AL++M+ + G+ I +
Sbjct: 60 QQPADAERALDTMNFDVIKGKPIRI 84
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ ++NL + L FSAFG + K+V DE SKGYAF+ + +Q+ A A+E M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ L+ R ++V K K+R
Sbjct: 159 NGMLLNDRKVFVGRFKSRKER 179
Score = 118 (46.6 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 25/90 (27%), Positives = 53/90 (58%)
Query: 37 LSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQD 96
+S Y + ++NL T + L+KEFS FG + K++ ++ +SKG+ F+ ++S +
Sbjct: 288 ISRYQ-GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPE 344
Query: 97 DALLALESMDHKNLDGRLIYVDIAKPGKDR 126
+A A+ M+ + + + +YV +A+ ++R
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>UNIPROTKB|F1NZU2 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GeneTree:ENSGT00550000074366
GO:GO:0003676 EMBL:AADN02002396 IPI:IPI00570859
Ensembl:ENSGALT00000025521 ArrayExpress:F1NZU2 Uniprot:F1NZU2
Length = 447
Score = 135 (52.6 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 37/96 (38%), Positives = 52/96 (54%)
Query: 28 FRTFNLR-ASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKG 86
F TF + A+ L + VRNL T E L+K FS FG++ VK +KD
Sbjct: 206 FVTFCTKEAAQEAVKLVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD-------- 257
Query: 87 YAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKP 122
YAFI + +D A+ A+E M+ K+L+G I + AKP
Sbjct: 258 YAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 293
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 137 (53.3 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V+ L T E TL++ F G + ++V D T SKG+ F+ + S++DA A E+M
Sbjct: 489 LFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 545
Query: 106 DHKNLDGRLIYVDIAKP-GKDRFGG 129
+ +DG + +D AKP G+ FGG
Sbjct: 546 EDGEIDGNKVTLDWAKPKGEGGFGG 570
Score = 118 (46.6 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 26/77 (33%), Positives = 48/77 (62%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+++ NL ++ E TLQ+ F + +K+ +++ KSKGYAFI++ S +DA AL S
Sbjct: 403 LVLSNLSYSATEETLQEVFE---KATHIKVPQNQ-NGKSKGYAFIEFASFEDAKEALNSC 458
Query: 106 DHKNLDGRLIYVDIAKP 122
+ + ++GR I +++ P
Sbjct: 459 NKREIEGRAIRLELQGP 475
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 137 (53.3 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 31/105 (29%), Positives = 58/105 (55%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
+ + ++N + L++ FSAFG VK++ D+ T +S+G+ F+ Y + ++A A+
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVS 249
Query: 104 SMDHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQQPLSEQDEV 148
M+ K ++GR+IYV A+ +R G R KQ+ ++ V
Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGV 294
Score = 117 (46.2 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 28/85 (32%), Positives = 50/85 (58%)
Query: 33 LRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQY 92
+ A+ + YPLAS + V +L E L ++FS G + +++ +D T++S GYA+I +
Sbjct: 1 MNATGAGYPLAS-LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINF 59
Query: 93 TSQDDALLALESMDHKNLDGRLIYV 117
DA AL++M+ + + GR I +
Sbjct: 60 QQPADAERALDTMNFEVIKGRPIRI 84
Score = 110 (43.8 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ ++NL + L FSAFG + K+V DE S+GY F+ + +Q+ A A+++M
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTM 158
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ L+ R ++V K ++R
Sbjct: 159 NGMLLNDRKVFVGHFKSRRER 179
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 137 (53.3 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V+ L T E TL++ F G + ++V D T SKG+ F+ + S++DA A E+M
Sbjct: 494 LFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 550
Query: 106 DHKNLDGRLIYVDIAKP-GKDRFGG 129
+ +DG + +D AKP G+ FGG
Sbjct: 551 EDGEIDGNKVTLDWAKPKGEGGFGG 575
Score = 118 (46.6 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 26/77 (33%), Positives = 48/77 (62%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+++ NL ++ E TLQ+ F + +K+ +++ KSKGYAFI++ S +DA AL S
Sbjct: 408 LVLSNLSYSATEETLQEVFE---KATHIKVPQNQ-NGKSKGYAFIEFASFEDAKEALNSC 463
Query: 106 DHKNLDGRLIYVDIAKP 122
+ + ++GR I +++ P
Sbjct: 464 NKREIEGRAIRLELQGP 480
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 137 (53.3 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V+ L T E TL++ F G + ++V D T SKG+ F+ + S++DA A E+M
Sbjct: 494 LFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 550
Query: 106 DHKNLDGRLIYVDIAKP-GKDRFGG 129
+ +DG + +D AKP G+ FGG
Sbjct: 551 EDGEIDGNKVTLDWAKPKGEGGFGG 575
Score = 118 (46.6 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 26/77 (33%), Positives = 48/77 (62%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+++ NL ++ E TLQ+ F + +K+ +++ KSKGYAFI++ S +DA AL S
Sbjct: 408 LVLSNLSYSATEETLQEVFE---KATHIKVPQNQ-NGKSKGYAFIEFASFEDAKEALNSC 463
Query: 106 DHKNLDGRLIYVDIAKP 122
+ + ++GR I +++ P
Sbjct: 464 NKREIEGRAIRLELQGP 480
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 137 (53.3 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 31/105 (29%), Positives = 57/105 (54%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
+ + ++N + +L++ FS FG+ VK+++D + KSKG+ F+ Y +DA A+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVE 249
Query: 104 SMDHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQQPLSEQDEV 148
M+ K + G++I+V A+ +R R KQ+ +S V
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV 294
Score = 125 (49.1 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 28/85 (32%), Positives = 51/85 (60%)
Query: 33 LRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQY 92
+ A+ S+YP+AS + V +L E L ++FS G V +++ +D IT++S GYA++ +
Sbjct: 1 MNAAASSYPMAS-LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF 59
Query: 93 TSQDDALLALESMDHKNLDGRLIYV 117
DA AL++M+ + G+ I +
Sbjct: 60 QQPADAERALDTMNFDVIKGKPIRI 84
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ ++NL + L FSAFG + K+V DE SKGYAF+ + +Q+ A A+E M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ L+ R ++V K K+R
Sbjct: 159 NGMLLNDRKVFVGRFKSRKER 179
Score = 118 (46.6 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 25/90 (27%), Positives = 53/90 (58%)
Query: 37 LSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQD 96
+S Y + ++NL T + L+KEFS FG + K++ ++ +SKG+ F+ ++S +
Sbjct: 288 ISRYQ-GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPE 344
Query: 97 DALLALESMDHKNLDGRLIYVDIAKPGKDR 126
+A A+ M+ + + + +YV +A+ ++R
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 137 (53.3 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 31/105 (29%), Positives = 56/105 (53%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
+ + ++N + +L++ FS FG+ VK+++D KSKG+ F+ Y +DA A+E
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVE 249
Query: 104 SMDHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQQPLSEQDEV 148
M+ K + G++I+V A+ +R R KQ+ +S V
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV 294
Score = 125 (49.1 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 28/85 (32%), Positives = 51/85 (60%)
Query: 33 LRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQY 92
+ A+ S+YP+AS + V +L E L ++FS G V +++ +D IT++S GYA++ +
Sbjct: 1 MNAAASSYPMAS-LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF 59
Query: 93 TSQDDALLALESMDHKNLDGRLIYV 117
DA AL++M+ + G+ I +
Sbjct: 60 QQPADAERALDTMNFDVIKGKPIRI 84
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ ++NL + L FSAFG + K+V DE SKGYAF+ + +Q+ A A+E M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ L+ R ++V K K+R
Sbjct: 159 NGMLLNDRKVFVGRFKSRKER 179
Score = 118 (46.6 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 25/90 (27%), Positives = 53/90 (58%)
Query: 37 LSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQD 96
+S Y + ++NL T + L+KEFS FG + K++ ++ +SKG+ F+ ++S +
Sbjct: 288 ISRYQ-GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPE 344
Query: 97 DALLALESMDHKNLDGRLIYVDIAKPGKDR 126
+A A+ M+ + + + +YV +A+ ++R
Sbjct: 345 EATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>UNIPROTKB|G1K177 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
Uniprot:G1K177
Length = 644
Score = 137 (53.3 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V N+P+ E L+ FS G V +LV D T K KGY F +Y Q+ AL A+ ++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 DHKNLDGRLIYVDIAKPGKDR 126
+ + GR + VD A K++
Sbjct: 78 NGREFSGRALRVDNAASEKNK 98
>UNIPROTKB|Q3ZBT6 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9913 "Bos taurus" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P62995 KO:K12897
OrthoDB:EOG4BVRW2 EMBL:BC103113 IPI:IPI00717759
RefSeq:NP_001029948.1 UniGene:Bt.49333 ProteinModelPortal:Q3ZBT6
SMR:Q3ZBT6 STRING:Q3ZBT6 PRIDE:Q3ZBT6 Ensembl:ENSBTAT00000002225
GeneID:615156 KEGG:bta:615156 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 InParanoid:Q3ZBT6 OMA:YDDREYY NextBio:20899475
Uniprot:Q3ZBT6
Length = 288
Score = 131 (51.2 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 48 VRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDH 107
V L T E L++ FS +G +A+V +V D+ +++S+G+AF+ + + DDA A E +
Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181
Query: 108 KNLDGRLIYVDIA 120
LDGR I VD +
Sbjct: 182 MELDGRRIRVDFS 194
>UNIPROTKB|E2RD37 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:YDDREYY EMBL:AAEX03017294
ProteinModelPortal:E2RD37 PRIDE:E2RD37 Ensembl:ENSCAFT00000021194
NextBio:20853966 Uniprot:E2RD37
Length = 288
Score = 131 (51.2 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 48 VRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDH 107
V L T E L++ FS +G +A+V +V D+ +++S+G+AF+ + + DDA A E +
Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181
Query: 108 KNLDGRLIYVDIA 120
LDGR I VD +
Sbjct: 182 MELDGRRIRVDFS 194
>UNIPROTKB|P62995 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=TAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:CH471052 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:U61267 EMBL:U87836 EMBL:AF057159 EMBL:U68063
EMBL:AK301118 EMBL:BC000160 EMBL:BC000451 EMBL:BC005898
IPI:IPI00220938 IPI:IPI00301503 IPI:IPI00472633
RefSeq:NP_001230808.1 RefSeq:NP_004584.1 UniGene:Hs.533122 PDB:2CQC
PDB:2KXN PDB:2RRA PDB:2RRB PDBsum:2CQC PDBsum:2KXN PDBsum:2RRA
PDBsum:2RRB ProteinModelPortal:P62995 SMR:P62995 DIP:DIP-42278N
IntAct:P62995 MINT:MINT-5004415 STRING:P62995 PhosphoSite:P62995
DMDM:51703330 PaxDb:P62995 PRIDE:P62995 DNASU:6434
Ensembl:ENST00000342294 Ensembl:ENST00000382191
Ensembl:ENST00000453386 Ensembl:ENST00000456380 GeneID:6434
KEGG:hsa:6434 UCSC:uc003fpv.3 GeneCards:GC03M185632
H-InvDB:HIX0003928 HGNC:HGNC:10781 HPA:CAB011692 MIM:602719
neXtProt:NX_P62995 PharmGKB:PA35697 InParanoid:P62995
PhylomeDB:P62995 ChiTaRS:TRA2B EvolutionaryTrace:P62995
GenomeRNAi:6434 NextBio:24991 Bgee:P62995 CleanEx:HS_SFRS10
Genevestigator:P62995 GermOnline:ENSG00000136527 Uniprot:P62995
Length = 288
Score = 131 (51.2 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 48 VRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDH 107
V L T E L++ FS +G +A+V +V D+ +++S+G+AF+ + + DDA A E +
Sbjct: 122 VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 181
Query: 108 KNLDGRLIYVDIA 120
LDGR I VD +
Sbjct: 182 MELDGRRIRVDFS 194
WARNING: HSPs involving 900 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.396 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 153 153 0.00081 105 3 11 22 0.50 31
30 0.41 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1150
No. of states in DFA: 585 (62 KB)
Total size of DFA: 142 KB (2088 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.69u 0.09s 17.78t Elapsed: 00:00:01
Total cpu time: 17.70u 0.09s 17.79t Elapsed: 00:00:01
Start: Tue May 21 00:17:25 2013 End: Tue May 21 00:17:26 2013
WARNINGS ISSUED: 2