BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031755
(153 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 55/81 (67%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T+E +L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIAKPGKD 125
M+ K++DGR I VD A D
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSD 87
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 55/81 (67%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T+E +L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIAKPGKD 125
M+ K++DGR I VD A D
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSD 87
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 54/81 (66%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T+E L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIAKPGKD 125
M+ K++DGR I VD A D
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSD 87
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 54/81 (66%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T+E L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIAKPGKD 125
M+ K++DGR I VD A D
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSD 87
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 54/81 (66%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T+E L++ FS +G+++EV +VKD T++S+G+ F+ + + DDA A+ +
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIAKPGKD 125
M+ K++DGR I VD A D
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSD 87
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102
+ RI VRNL ++T E L+K FS FG+++E+ + D +KKSKG AFI Y ++A+ AL
Sbjct: 360 SGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQAL 419
Query: 103 ESMDHKNLDGRLIYVDIAKPGK 124
MD K GRLI+V PGK
Sbjct: 420 NDMDGKVFQGRLIHV---LPGK 438
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102
+S+I+++NLPF + ++K F+A+GE+ V++ K + +G+ F+++ ++++A A+
Sbjct: 794 SSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPK-KPNGGHRGFGFVEFLTEEEAKNAM 852
Query: 103 ESMDHKNLDGRLIYVDIAKPGKD 125
E++ + + GR + + A+ K+
Sbjct: 853 EALGNSHFYGRHLVLQYAEQDKN 875
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
++V+N+PF T EH L + FS FGE++ V + ++ A I+Y ++A + +++
Sbjct: 555 LLVKNIPFKTQEHELHELFSKFGELSRV------VLSPARTIALIEYIHPNEAKVGFKNL 608
Query: 106 DHKNLDGRLIYVDIAKPG 123
+ +Y++ A G
Sbjct: 609 AYSKFHHVPLYLEWAPEG 626
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
+RI V+ LP + ++ F FG V + K++K + KS+ + FI ++++ A AL
Sbjct: 4 TRICVKQLPKHLTDKRFKEHFEKFGTVTDAKIIKKD--GKSRLFGFIGFSTEQSAKNAL- 60
Query: 104 SMDHKNLDGRLIYVDIA 120
S++ +D I V+ A
Sbjct: 61 SLNGTFIDTSKIVVETA 77
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1
Length = 157
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 52/77 (67%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
++ V L F T E L+ FS+FG ++EV +VKD T++S+G+ FI +T+ + A +A+
Sbjct: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
Query: 104 SMDHKNLDGRLIYVDIA 120
+M+ ++LDGR I VD A
Sbjct: 66 AMNGESLDGRQIRVDHA 82
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 53/77 (68%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
++ + L F T+E +L++ FS +G+++EV +VKD TK+S+G+ F+ + + DDA A+
Sbjct: 5 GKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMM 64
Query: 104 SMDHKNLDGRLIYVDIA 120
+M+ K +DGR I VD A
Sbjct: 65 AMNGKAVDGRQIRVDQA 81
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 53/76 (69%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T E +L++ FS +G+VAEV +VKD +K+S+G+ F+ + + +DA A+ +
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 105 MDHKNLDGRLIYVDIA 120
M+ K++DGR I VD A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 53/79 (67%)
Query: 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLA 101
++S++ V L + T + +L++ F++FGEV E ++ D T +S+G+ F+ ++ +D A A
Sbjct: 33 MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92
Query: 102 LESMDHKNLDGRLIYVDIA 120
++ MD K L+GR I V++A
Sbjct: 93 IKEMDGKELNGRQIRVNLA 111
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 51/76 (67%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ V L F T E L+ FS+FG ++EV +VKD T++S+G+ FI +T+ + A A+ +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 105 MDHKNLDGRLIYVDIA 120
M+ ++LDGR I VD A
Sbjct: 67 MNGESLDGRQIRVDHA 82
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 52/77 (67%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
++ + L F T+E L++ F+ +G ++EV +VKD TK+S+G+ F+ + + DDA A+
Sbjct: 5 GKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMM 64
Query: 104 SMDHKNLDGRLIYVDIA 120
+M+ K++DGR I VD A
Sbjct: 65 AMNGKSVDGRQIRVDQA 81
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
++ V L F T E L+ FS +G++ EV +VKD TK+S+G+ F+ + + +DA A+
Sbjct: 6 GKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMA 65
Query: 104 SMDHKNLDGRLIYVDIA 120
M+ K +DGR I VD A
Sbjct: 66 GMNGKTVDGRQIRVDQA 82
>sp|Q4WJT7|MRD1_ASPFU Multiple RNA-binding domain-containing protein 1 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=mrd1 PE=3 SV=1
Length = 825
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 52/82 (63%)
Query: 36 SLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQ 95
++ + L+SR+ VRNLP+ E L+ FS FG++ E+ + D + SKG+A++QY
Sbjct: 293 NIEHIRLSSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEP 352
Query: 96 DDALLALESMDHKNLDGRLIYV 117
D A+ A + +D K+ GRL+++
Sbjct: 353 DAAVQAYKELDGKHFQGRLMHI 374
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
++I+++NLPF + ++ F A+G++ V++ K + + ++G+ F + S +A A++
Sbjct: 702 TKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPK-KFDRSARGFGFADFVSAREAENAMD 760
Query: 104 SMDHKNLDGRLIYVDIA 120
++ + +L GR + ++ A
Sbjct: 761 ALKNTHLLGRRLVLEFA 777
>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
SV=2
Length = 155
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
++ V L F T E L+ FS+FG ++EV +VKD T++S+G+ FI +T+ + A +
Sbjct: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMR 65
Query: 104 SMDHKNLDGRLIYVDIA 120
+M+ ++LDGR I VD A
Sbjct: 66 AMNGESLDGRQIRVDHA 82
>sp|Q9CZ96|ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Mus musculus GN=Zcrb1 PE=1 SV=1
Length = 217
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALL 100
P S + V NLPF+ + L + FS +G+V +V ++KD+ T+KSKG AFI + +D AL
Sbjct: 7 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALN 66
Query: 101 ALESMDHKNLDGRLIYVDIA 120
++++K L GR+I IA
Sbjct: 67 CTRAINNKQLFGRVIKASIA 86
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2
SV=1
Length = 168
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 50/78 (64%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
R V L + T+ TL++ F+ FG+V + K++ D T +S+G+ F+ ++S+ L A+E+
Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68
Query: 105 MDHKNLDGRLIYVDIAKP 122
M+ K LDGR I V+ A+
Sbjct: 69 MNGKELDGRNITVNQAQS 86
>sp|Q499V6|ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Rattus norvegicus GN=Zcrb1 PE=2 SV=1
Length = 217
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALL 100
P S + V NLPF+ + L + FS +G+V +V ++KD+ T+KSKG AFI + +D AL
Sbjct: 7 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALN 66
Query: 101 ALESMDHKNLDGRLIYVDIA 120
++++K L GR+I IA
Sbjct: 67 CTRAINNKQLFGRVIKASIA 86
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 57/94 (60%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V NL + T TL++ F +G V +V + +D TK+S+G+AF+++ + DA A+++M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 106 DHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQ 139
D LDGR + V +A+ G+ + R PP++
Sbjct: 76 DGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRR 109
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 50/78 (64%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
R V L + T +L+ F+++GE+ + K++ D T +S+G+ F+ ++S++ L A+E+
Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68
Query: 105 MDHKNLDGRLIYVDIAKP 122
M+ K LDGR I V+ A+
Sbjct: 69 MNGKELDGRNITVNQAQS 86
>sp|Q29RT0|RBMX_BOVIN RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX PE=2
SV=1
Length = 396
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
++ + L T E +L+ F +G ++EV L+KD T KS+G+AFI + S DA A+
Sbjct: 8 GKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVR 67
Query: 104 SMDHKNLDGRLIYV 117
M+ K+LDG+ I V
Sbjct: 68 DMNGKSLDGKAIKV 81
>sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Homo sapiens GN=ZCRB1 PE=1 SV=2
Length = 217
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%)
Query: 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALL 100
P S + V NLPF+ + L + FS +G+V +V ++KD+ T+KSKG AFI + +D A
Sbjct: 7 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQN 66
Query: 101 ALESMDHKNLDGRLIYVDIA 120
++++K L GR+I IA
Sbjct: 67 CTRAINNKQLFGRVIKASIA 86
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes GN=SRSF2
PE=2 SV=3
Length = 221
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 51/79 (64%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V NL + T TL++ F +G V +V + +D TK+S+G+AF+++ + DA A+++M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 106 DHKNLDGRLIYVDIAKPGK 124
D LDGR + V +A+ G+
Sbjct: 76 DGAVLDGRELRVQMARYGR 94
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana
GN=RNU1 PE=1 SV=1
Length = 427
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V L + + E +++EF ++G + V LV D++T K KGYAFI+Y D A +
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 106 DHKNLDGRLIYVDIAK 121
D + +DGR + VD+ +
Sbjct: 200 DGQKIDGRRVLVDVER 215
>sp|Q5BGA9|MRD1_EMENI Multiple RNA-binding domain-containing protein 1 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=mrd1 PE=3 SV=1
Length = 819
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 36 SLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQ 95
++ N +++R+ VRNL + T E L+ FS FG++ E+ + D SKG+A++QY
Sbjct: 287 NIENIRISARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADP 346
Query: 96 DDALLALESMDHKNLDGRLIYV 117
D A+ A ++D K GRL+++
Sbjct: 347 DAAVEAYRNLDGKIFQGRLLHI 368
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
++I+++NLPF + ++ F A+G++ V++ K + + ++G+ F + S +A A++
Sbjct: 697 TKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPK-KFDRSARGFGFADFVSAREAENAMD 755
Query: 104 SMDHKNLDGRLIYVDIA 120
++ + +L GR + ++ A
Sbjct: 756 ALKNTHLLGRRLVLEFA 772
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 13/107 (12%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
I+V+N + T L+K F FG++ + + S A + + D+A A +S+
Sbjct: 480 ILVKNFSYGTKTEDLRKLFEPFGQITRL------LMPPSGTIAIVAFARPDEAQKAFKSL 533
Query: 106 DHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQQPLSEQDEVADCW 152
++ L +++++ K KD F + P Q PL E V+ +
Sbjct: 534 AYRKLGDSILFLE--KAPKDLF-----EADVPPQNPLPETKAVSQGF 573
>sp|Q06A98|SRSF2_PIG Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2 PE=2
SV=1
Length = 221
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 51/79 (64%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V NL + T TL++ F +G V +V + +D TK+S+G+AF+++ + DA A+++M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 106 DHKNLDGRLIYVDIAKPGK 124
D LDGR + V +A+ G+
Sbjct: 76 DGAVLDGRELRVQMARYGR 94
>sp|Q6PDU1|SRSF2_RAT Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus
GN=Srsf2 PE=1 SV=3
Length = 221
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 51/79 (64%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V NL + T TL++ F +G V +V + +D TK+S+G+AF+++ + DA A+++M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 106 DHKNLDGRLIYVDIAKPGK 124
D LDGR + V +A+ G+
Sbjct: 76 DGAVLDGRELRVQMARYGR 94
>sp|Q62093|SRSF2_MOUSE Serine/arginine-rich splicing factor 2 OS=Mus musculus GN=Srsf2
PE=1 SV=4
Length = 221
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 51/79 (64%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V NL + T TL++ F +G V +V + +D TK+S+G+AF+++ + DA A+++M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 106 DHKNLDGRLIYVDIAKPGK 124
D LDGR + V +A+ G+
Sbjct: 76 DGAVLDGRELRVQMARYGR 94
>sp|Q01130|SRSF2_HUMAN Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2
PE=1 SV=4
Length = 221
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 51/79 (64%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V NL + T TL++ F +G V +V + +D TK+S+G+AF+++ + DA A+++M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 106 DHKNLDGRLIYVDIAKPGK 124
D LDGR + V +A+ G+
Sbjct: 76 DGAVLDGRELRVQMARYGR 94
>sp|Q3MHR5|SRSF2_BOVIN Serine/arginine-rich splicing factor 2 OS=Bos taurus GN=SRSF2 PE=2
SV=3
Length = 221
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 51/79 (64%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V NL + T TL++ F +G V +V + +D TK+S+G+AF+++ + DA A+++M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 106 DHKNLDGRLIYVDIAKPGK 124
D LDGR + V +A+ G+
Sbjct: 76 DGAVLDGRELRVQMARYGR 94
>sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Bos taurus GN=ZCRB1 PE=2 SV=1
Length = 217
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALL 100
P S + V NLPF+ + L + FS +G+V +V ++KD+ T++SKG AFI + +D A
Sbjct: 7 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQN 66
Query: 101 ALESMDHKNLDGRLIYVDIA 120
++++K L GR+I IA
Sbjct: 67 CTRAINNKQLFGRVIKASIA 86
>sp|Q08BH5|RBM46_DANRE Probable RNA-binding protein 46 OS=Danio rerio GN=rbm46 PE=2 SV=1
Length = 510
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 51/89 (57%), Gaps = 14/89 (15%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAF--GEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
+ VRNL +T E TL+ EFS G V VK + D YAFI + +++DAL ALE
Sbjct: 222 LYVRNLMLSTTEETLRSEFSQLKPGSVERVKKLTD--------YAFIHFYNREDALTALE 273
Query: 104 SMDHKNLDGRLIYVDIAKP----GKDRFG 128
SM+ K +DG I V +AKP G RFG
Sbjct: 274 SMNGKVIDGSPIEVTLAKPASKDGNKRFG 302
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105
+ V +P +E L F G + E +L+ E + +++GYAF+ YT+++ A A++ +
Sbjct: 47 VFVGKIPRDMYEDELVPVFEQAGHIYEFRLMM-EFSGENRGYAFVMYTTREKAQRAIQLL 105
Query: 106 DHKNLD-GRLIYVDIA 120
D+ + G+ I V ++
Sbjct: 106 DNYEIRPGKFIGVCVS 121
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGE-VAEVKLVKDEITK-KSKGYAFIQYTSQDDALLAL 102
R+ + ++P + +Q+E E V +V + + + K++G+AF++Y S A +A
Sbjct: 126 RLFIGSIPKDKKKEEIQEEMMKVTEGVMDVIVYPSAVDRMKNRGFAFVEYESHKAAAMAR 185
Query: 103 ESM--DHKNLDGRLIYVDIAKPGKD 125
+ L G I VD A+P K+
Sbjct: 186 RKLIPGTFQLWGHTIQVDWAEPEKE 210
>sp|O75526|RMXL2_HUMAN RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens
GN=RBMXL2 PE=1 SV=3
Length = 392
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
++ + L T E L+ EF +G + EV L+KD T KS+G+AF+ + S DA A
Sbjct: 8 GKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAAR 67
Query: 104 SMDHKNLDGRLIYV 117
M+ K+LDG+ I V
Sbjct: 68 DMNGKSLDGKAIKV 81
>sp|Q7ZWA3|RBMX_DANRE RNA-binding motif protein, X chromosome OS=Danio rerio GN=rbmx PE=2
SV=1
Length = 379
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L T E L+ FS FG ++EV L+KD T KS+G+AF+ Y + DA A
Sbjct: 9 KLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAARE 68
Query: 105 MDHKNLDGRLIYVDIA 120
M+ K LDG+ I V+ A
Sbjct: 69 MNGKPLDGKPIKVEQA 84
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 65/113 (57%), Gaps = 11/113 (9%)
Query: 16 FANSLTNRENPCFRTFNLRASLSNYPL--------ASRIMVRNLPFTTHEHTLQKEFSAF 67
F N L N + N + SLS+ L +S++ + + ++ E +L++ F+ +
Sbjct: 7 FGNILKQTTN---KQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKY 63
Query: 68 GEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120
GEV + +++ D T +S+G+ F+ +TS + A A++++D ++L GR++ V+ A
Sbjct: 64 GEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYA 116
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102
+S+I V + ++T E L++ FS +GEV + K++ D T +S+G+AF+ +TS ++A A+
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 103 ESMDHKNLDGRLIYVDIA 120
+ +D ++L GR I V+ A
Sbjct: 93 Q-LDGQDLHGRRIRVNYA 109
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 48/75 (64%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102
+ R+ VRNLP+T+ E L+K FS +G ++E+ D +TKK KG+AFI + + A+ A
Sbjct: 401 SGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAY 460
Query: 103 ESMDHKNLDGRLIYV 117
+D + GR+++V
Sbjct: 461 SEVDGQVFQGRMLHV 475
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEI-TKKSKGYAFIQYTSQDDALLAL 102
S+I+VRN+PF H +++ FS FGE+ V+L K T +G+ F+ + ++ DA A
Sbjct: 832 SKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891
Query: 103 ESMDHK-NLDGRLIYVDIA 120
++ H +L GR + ++ A
Sbjct: 892 NALCHSTHLYGRRLVLEWA 910
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 10/105 (9%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAE--VKLVKDEITKKSKGYAFIQYTSQDDALLA 101
SR++V+NLP E ++ F+AFG + + +K KD K + + FI + S+++A A
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD---GKFRKFGFIGFKSEEEAQKA 58
Query: 102 LESMDHKNLDGRLIYVDIAK----PGKDR-FGGYPRTSGPPKQQP 141
+ + +D I V+ K P K R + + + PKQ P
Sbjct: 59 QKHFNKSFIDTSRITVEFCKSFGDPAKPRAWSKHAQKPSQPKQPP 103
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 11/83 (13%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSK-------GYAFIQYTSQDDA 98
+ ++NL F T E L++ FS G V + K KK+K G+ F++Y + A
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISK----KKNKAGVLLSMGFGFVEYRKPEQA 787
Query: 99 LLALESMDHKNLDGRLIYVDIAK 121
AL+ + +DG + V I++
Sbjct: 788 QKALKQLQGHVVDGHKLEVRISE 810
>sp|P0CR16|MRD1_CRYNJ Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=MRD1 PE=3 SV=1
Length = 769
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
SR+ VRNL F T +L FS +G + E L + T + G AF+Q+ + +DAL A +
Sbjct: 221 SRLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAAYK 280
Query: 104 SMDHKNLDGRLIYV--DIAKPGKDRFGGYPRTSGPPKQQPLSEQDE 147
++D GRL++V AKPG++ G SG + L ++DE
Sbjct: 281 ALDKTIFQGRLLHVLPGRAKPGQE---GAAAGSGVVDGKVLGKRDE 323
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 57/88 (64%), Gaps = 5/88 (5%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEI-----TKKSKGYAFIQYTSQDD 97
+++++V+NLPF + +++ FSA+G++ ++L + + + ++G+AF+++T+ +
Sbjct: 639 STKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHTE 698
Query: 98 ALLALESMDHKNLDGRLIYVDIAKPGKD 125
A A+E++ H +L GR + + A G++
Sbjct: 699 AARAMEALKHTHLLGRHLVLQWANEGEE 726
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 43 ASRIMVRNLPFTT---HEHTLQKEFSAFGEVAEVKLVKDEI---TKKSKGYAFIQYTSQD 96
S + ++ L FTT H T+ F A V++ D K S GY F+ + +++
Sbjct: 534 GSTLFLKGLNFTTTTPHLQTVLSHIPGF-SFARVQMKPDPKRPGEKLSMGYGFVGFKTKE 592
Query: 97 DALLALESMDHKNLDGRLIYVDIAKPG 123
A AL++++ +DG+ + V A+ G
Sbjct: 593 AATKALKALEGFEIDGKSLEVKFAQRG 619
>sp|P0CR17|MRD1_CRYNB Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=MRD1 PE=3 SV=1
Length = 769
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
SR+ VRNL F T +L FS +G + E L + T + G AF+Q+ + +DAL A +
Sbjct: 221 SRLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAAYK 280
Query: 104 SMDHKNLDGRLIYV--DIAKPGKDRFGGYPRTSGPPKQQPLSEQDE 147
++D GRL++V AKPG++ G SG + L ++DE
Sbjct: 281 ALDKTIFQGRLLHVLPGRAKPGQE---GAAAGSGVVDGKVLGKRDE 323
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 57/88 (64%), Gaps = 5/88 (5%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEI-----TKKSKGYAFIQYTSQDD 97
+++++V+NLPF + +++ FSA+G++ ++L + + + ++G+AF+++T+ +
Sbjct: 639 STKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTTHTE 698
Query: 98 ALLALESMDHKNLDGRLIYVDIAKPGKD 125
A A+E++ H +L GR + + A G++
Sbjct: 699 AARAMEALKHTHLLGRHLVLQWANEGEE 726
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 43 ASRIMVRNLPFTT---HEHTLQKEFSAFGEVAEVKLVKDEI---TKKSKGYAFIQYTSQD 96
S + ++ L FTT H T+ F A V++ D K S GY F+ + +++
Sbjct: 534 GSTLFLKGLNFTTTTPHLQTVLSHIPGF-SFARVQMKPDPKRPGEKLSMGYGFVGFKTKE 592
Query: 97 DALLALESMDHKNLDGRLIYVDIAKPG 123
A AL++++ +DG+ + V A+ G
Sbjct: 593 AATKALKALEGFEIDGKSLEVKFAQRG 619
>sp|P39697|RT19_ARATH 40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana
GN=RPS19 PE=1 SV=2
Length = 212
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 53/80 (66%)
Query: 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLA 101
+++++ + L T EH+L+ FS+F V E +++ +++T +S+GY F+ + S+D A A
Sbjct: 29 MSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSA 88
Query: 102 LESMDHKNLDGRLIYVDIAK 121
+ +M+ + L+G I V++AK
Sbjct: 89 ISAMNGQELNGFNISVNVAK 108
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 52/88 (59%)
Query: 34 RASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYT 93
RA ++ + R+ V NLP+ L++ FS G+V ++V D T +S+G+ F+ +
Sbjct: 139 RAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMS 198
Query: 94 SQDDALLALESMDHKNLDGRLIYVDIAK 121
S+ + A+ ++D + LDGR + V++A+
Sbjct: 199 SESEVNDAIAALDGQTLDGRAVRVNVAE 226
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%)
Query: 36 SLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQ 95
S P +++ V NLP+ L F A G V +++ + T +S+G+ F+ ++
Sbjct: 47 GFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTV 106
Query: 96 DDALLALESMDHKNLDGRLIYVDIAKP 122
++A A+E ++ ++DGR + V+ A P
Sbjct: 107 EEAEKAVELLNGYDMDGRQLTVNKAAP 133
>sp|Q6CEW9|MRD1_YARLI Multiple RNA-binding domain-containing protein 1 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=MRD1 PE=3 SV=1
Length = 828
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
R+ +RNL +T E ++ FS +GE+ EV L + T + KG+A +Q+ ++A+ A E+
Sbjct: 302 RLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEA 361
Query: 105 MDHKNLDGRLIYVDIAKPGKD--RFGGYPRTSGP-PKQQPLSEQDEVADCWY 153
D K GRL+++ KP KD R + + P KQQ L + E A +
Sbjct: 362 QDGKIFQGRLLHILPGKPKKDYNRLDEHDLKNLPLKKQQELKRKAEAAKQQF 413
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLA 101
+ S+I+++NLPF + +QK F AFG + V++ K + +S+G+AF +Y S +A A
Sbjct: 701 IDSKILIKNLPFEATKKDVQKLFGAFGSLKTVRVPK-KFNSESRGFAFAEYVSAKEAEHA 759
Query: 102 LESMDHKNLDGRLIYVDIAK 121
+ ++ +L GR + + A+
Sbjct: 760 MSALQGTHLLGRRLVLQYAQ 779
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGE--VAEVKLVKDEITKK---SKGYAFIQYTSQDD 97
++ + V+NL F T L F A VA+VK+ D K S G+ F++++S++
Sbjct: 604 STSVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEA 663
Query: 98 ALLALESMDHKNLDGRLIYVDIAKPGKD 125
A +A ++MD LDG + + I+ G+D
Sbjct: 664 AEIAQKAMDGHVLDGHKLQLKISNRGQD 691
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFS----------AFGEVAEVKLVKDEITKKSKGYAFIQYT 93
SR++V+NLP E L+K FS A ++ +VK+V+ K++ + F+ +
Sbjct: 2 SRLIVKNLPPYLDEAGLKKHFSTVKDPKSAGFAPSDITDVKVVRAR-DGKTRRFGFVGFR 60
Query: 94 SQDDALLALESMDHKNLDGRLIYVDIA 120
S + A A++ D ++ I V +A
Sbjct: 61 SDETAEAAVKYFDTSFINSTKISVAVA 87
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDAL 99
Y A R+ V NLP+ L++ FS G+V E ++V D T +S+G+ F+ + D+
Sbjct: 240 YEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 299
Query: 100 LALESMDHKNLDGRLIYVDIAK 121
A+ ++D +NL+GR I V++A+
Sbjct: 300 EAISALDGQNLEGRAIRVNVAE 321
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
+++ V NL + + L F G V +++ + T +S+G+ F+ +S D+A A+E
Sbjct: 150 AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209
Query: 104 SMDHKNLDGRLIYVDIAKPGKDRFGGYPRTSGP 136
+ +L+GRL+ V+ A P R PR P
Sbjct: 210 KFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEP 242
>sp|Q4R813|RMXL2_MACFA RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis
GN=RBMXL2 PE=2 SV=1
Length = 394
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103
++ + L T E L+ EF +G + EV L+KD T KS+G+AF+ + S +A A
Sbjct: 8 GKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPANAKAAAR 67
Query: 104 SMDHKNLDGRLIYV 117
M+ K+LDG+ I V
Sbjct: 68 DMNGKSLDGKAIKV 81
>sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Xenopus laevis GN=zcrb1 PE=2 SV=1
Length = 218
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%)
Query: 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALL 100
P S + V NLPF+ + L + FS +G+V +V ++KD+ ++KSKG +F+ + ++ A
Sbjct: 7 PSKSTVYVSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRKSKGVSFVLFLDKESAQN 66
Query: 101 ALESMDHKNLDGRLIYVDIAK 121
+ +++K L GR I IAK
Sbjct: 67 CVRGLNNKQLFGRAIKASIAK 87
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
R V L + T + +LQ FS +G+V + K++ D T +S+G+ F+ + S + A+E+
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 105 MDHKNLDGRLIYVDIAKP 122
M+ ++LDGR I V+ A+
Sbjct: 67 MNGQDLDGRNITVNEAQS 84
>sp|Q96E39|RMXL1_HUMAN RNA binding motif protein, X-linked-like-1 OS=Homo sapiens
GN=RBMXL1 PE=1 SV=1
Length = 390
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
++ + L T+E L+ F +G + EV L+KD T KS+G+AF+ + S DA A
Sbjct: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 105 MDHKNLDGRLIYVDIA 120
M+ K+LDG+ I V+ A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
R V L + T E +L+ FS FGE+ + K++ D T +S+G+ F+ + + A+E
Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68
Query: 105 MDHKNLDGRLIYVDIAK 121
M+ ++LDGR I V+ A+
Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8
PE=1 SV=1
Length = 169
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104
R V L + T++ LQ+ FS FG+V + K++ D + +S+G+ F+ + + A+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 105 MDHKNLDGRLIYVDIAK 121
M+ K LDGR+I V+ A+
Sbjct: 67 MNGKELDGRVITVNEAQ 83
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 48/75 (64%)
Query: 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102
+ R+ VRNL +T+ E L+K FSA+G ++E+ D +TKK KG+AF+ + + A+ A
Sbjct: 399 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAY 458
Query: 103 ESMDHKNLDGRLIYV 117
+D + GR+++V
Sbjct: 459 AEVDGQVFQGRMLHV 473
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEI-TKKSKGYAFIQYTSQDDALLAL 102
S+I+VRN+PF ++ +++ FS FGE+ V+L K T +G+ F+ + ++ DA A
Sbjct: 824 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 883
Query: 103 ESMDHK-NLDGRLIYVDIA 120
++ H +L GR + ++ A
Sbjct: 884 NALCHSTHLYGRRLVLEWA 902
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAE--VKLVKDEITKKSKGYAFIQYTSQDDALLA 101
SR++V+NLP E ++ F+AFG + + +K KD K + + FI + S+++A A
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD---GKFRKFGFIGFKSEEEAQAA 58
Query: 102 LESMDHKNLDGRLIYVDIAK----PGKDR-FGGYPRTSGPPKQ 139
L +D I V+ K P K R + + + S PKQ
Sbjct: 59 LNHFHRSFIDTTRITVEFCKSFGDPSKPRAWSKHAQKSSQPKQ 101
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 11/106 (10%)
Query: 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSK-------GYAFIQYTSQDDA 98
+ ++NL F+T E TL+ FS G + + K KK+K G+ F++Y + A
Sbjct: 724 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISK----KKNKAGVLLSMGFGFVEYKKPEQA 779
Query: 99 LLALESMDHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQQPLSE 144
AL+ + +DG + V I++ R PK+Q S+
Sbjct: 780 QKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSK 825
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 15/128 (11%)
Query: 27 CFRTFNLRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKG 86
C +F+ A+ + + I+ +NLP T +Q+ FS FG + V L + IT
Sbjct: 570 CLDSFSQAAAERSKTV---ILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGIT----- 621
Query: 87 YAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKDRFGGYPRTSGPPKQQPLS--- 143
A +++ +A A + + +Y++ A G FG P+ +QP
Sbjct: 622 -AIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG--VFGAAPQKKDSQHEQPAEKAE 678
Query: 144 -EQDEVAD 150
EQ+ V D
Sbjct: 679 VEQETVLD 686
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,283,867
Number of Sequences: 539616
Number of extensions: 2076899
Number of successful extensions: 7029
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 227
Number of HSP's that attempted gapping in prelim test: 5458
Number of HSP's gapped (non-prelim): 1557
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)