Query 031755
Match_columns 153
No_of_seqs 108 out of 1420
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 04:54:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031755.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031755hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 5.4E-19 1.2E-23 122.6 13.9 86 40-125 31-116 (144)
2 TIGR01659 sex-lethal sex-letha 99.7 1.5E-17 3.2E-22 130.1 11.0 120 5-124 150-276 (346)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 2.4E-17 5.3E-22 129.0 12.0 84 43-126 269-352 (352)
4 TIGR01645 half-pint poly-U bin 99.7 1.1E-16 2.4E-21 132.0 11.5 85 42-126 203-287 (612)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.8E-16 3.8E-21 124.2 11.6 84 42-125 2-85 (352)
6 PF00076 RRM_1: RNA recognitio 99.7 2.2E-16 4.8E-21 95.7 9.2 70 46-116 1-70 (70)
7 TIGR01659 sex-lethal sex-letha 99.7 3.4E-16 7.5E-21 122.5 11.5 86 39-124 103-188 (346)
8 KOG0107 Alternative splicing f 99.7 9.2E-16 2E-20 107.0 10.1 82 39-125 6-87 (195)
9 KOG0122 Translation initiation 99.6 1.5E-15 3.2E-20 110.9 10.0 85 39-123 185-269 (270)
10 TIGR01642 U2AF_lg U2 snRNP aux 99.6 2.3E-15 5E-20 123.1 11.9 83 42-124 294-376 (509)
11 TIGR01622 SF-CC1 splicing fact 99.6 1.8E-15 4E-20 122.3 10.2 117 5-121 132-264 (457)
12 KOG0149 Predicted RNA-binding 99.6 1E-15 2.2E-20 111.2 7.6 80 42-122 11-90 (247)
13 PF14259 RRM_6: RNA recognitio 99.6 6.6E-15 1.4E-19 89.7 9.5 70 46-116 1-70 (70)
14 KOG4207 Predicted splicing fac 99.6 6.2E-15 1.4E-19 105.4 8.7 85 40-124 10-94 (256)
15 KOG0121 Nuclear cap-binding pr 99.6 4.5E-15 9.7E-20 98.8 7.2 81 41-121 34-114 (153)
16 TIGR01645 half-pint poly-U bin 99.6 1.1E-14 2.4E-19 120.3 10.4 81 41-121 105-185 (612)
17 PLN03120 nucleic acid binding 99.6 1.9E-14 4.1E-19 107.2 10.5 77 43-123 4-80 (260)
18 TIGR01628 PABP-1234 polyadenyl 99.6 5E-15 1.1E-19 122.7 8.3 84 40-124 282-365 (562)
19 KOG0148 Apoptosis-promoting RN 99.6 9E-15 1.9E-19 108.3 8.6 114 5-124 105-239 (321)
20 KOG0113 U1 small nuclear ribon 99.6 6.1E-14 1.3E-18 105.1 11.4 82 41-122 99-180 (335)
21 KOG0123 Polyadenylate-binding 99.5 2.3E-14 4.9E-19 113.0 8.9 122 4-129 37-159 (369)
22 KOG0125 Ataxin 2-binding prote 99.5 2.5E-14 5.4E-19 108.4 8.4 84 39-124 92-175 (376)
23 TIGR01628 PABP-1234 polyadenyl 99.5 4.8E-14 1E-18 116.9 10.9 78 45-122 2-79 (562)
24 KOG0111 Cyclophilin-type pepti 99.5 5.4E-15 1.2E-19 106.8 4.4 88 42-129 9-96 (298)
25 smart00362 RRM_2 RNA recogniti 99.5 1.1E-13 2.5E-18 83.1 9.1 71 45-117 1-71 (72)
26 KOG0126 Predicted RNA-binding 99.5 2.1E-15 4.6E-20 105.8 0.9 88 35-122 26-114 (219)
27 KOG0130 RNA-binding protein RB 99.5 8.7E-14 1.9E-18 93.5 8.0 86 40-125 69-154 (170)
28 KOG0105 Alternative splicing f 99.5 1E-13 2.2E-18 97.8 8.5 78 43-123 6-83 (241)
29 TIGR01648 hnRNP-R-Q heterogene 99.5 1.9E-13 4.2E-18 112.7 11.3 75 43-125 233-309 (578)
30 KOG0108 mRNA cleavage and poly 99.5 8.9E-14 1.9E-18 111.0 8.9 86 44-129 19-104 (435)
31 PLN03213 repressor of silencin 99.5 1.2E-13 2.7E-18 109.7 9.5 77 42-122 9-87 (759)
32 KOG0148 Apoptosis-promoting RN 99.5 6.1E-14 1.3E-18 103.9 7.2 89 43-131 62-150 (321)
33 TIGR01622 SF-CC1 splicing fact 99.5 2.5E-13 5.4E-18 109.9 11.0 83 41-124 87-169 (457)
34 smart00360 RRM RNA recognition 99.5 2.8E-13 6.2E-18 81.0 8.7 71 48-118 1-71 (71)
35 PLN03121 nucleic acid binding 99.5 3.4E-13 7.4E-18 99.3 10.5 77 42-122 4-80 (243)
36 TIGR01648 hnRNP-R-Q heterogene 99.5 2.2E-13 4.7E-18 112.4 10.2 80 40-120 55-135 (578)
37 KOG0114 Predicted RNA-binding 99.5 6.6E-13 1.4E-17 85.4 9.4 82 39-123 14-95 (124)
38 KOG0117 Heterogeneous nuclear 99.5 4.4E-13 9.6E-18 105.2 9.8 85 39-123 79-164 (506)
39 COG0724 RNA-binding proteins ( 99.5 7.4E-13 1.6E-17 98.4 10.2 80 43-122 115-194 (306)
40 cd00590 RRM RRM (RNA recogniti 99.4 2.2E-12 4.7E-17 77.8 10.0 74 45-119 1-74 (74)
41 KOG0144 RNA-binding protein CU 99.4 7.6E-14 1.6E-18 109.0 3.9 90 39-129 120-212 (510)
42 KOG0145 RNA-binding protein EL 99.4 2E-13 4.3E-18 100.9 5.9 120 5-124 84-210 (360)
43 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 1.9E-12 4.1E-17 105.7 11.0 79 40-123 272-351 (481)
44 KOG0145 RNA-binding protein EL 99.4 1.1E-12 2.4E-17 97.0 8.7 87 40-126 38-124 (360)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 3.1E-12 6.8E-17 104.4 10.3 77 42-124 1-79 (481)
46 KOG0146 RNA-binding protein ET 99.4 1.3E-12 2.8E-17 97.0 5.6 88 39-126 281-368 (371)
47 KOG0131 Splicing factor 3b, su 99.3 3.2E-12 6.9E-17 89.9 6.5 80 42-121 8-87 (203)
48 KOG0127 Nucleolar protein fibr 99.3 8.1E-12 1.8E-16 100.3 8.6 82 43-125 117-198 (678)
49 smart00361 RRM_1 RNA recogniti 99.3 1.9E-11 4.1E-16 74.6 8.0 61 57-117 2-69 (70)
50 KOG0144 RNA-binding protein CU 99.3 1.5E-11 3.3E-16 96.4 9.1 86 41-126 32-120 (510)
51 PF13893 RRM_5: RNA recognitio 99.3 2.4E-11 5.1E-16 70.9 7.4 56 60-120 1-56 (56)
52 KOG0147 Transcriptional coacti 99.3 8.7E-12 1.9E-16 100.0 6.1 84 41-124 276-359 (549)
53 KOG0109 RNA-binding protein LA 99.3 2.1E-11 4.6E-16 91.4 7.6 74 44-125 3-76 (346)
54 KOG0131 Splicing factor 3b, su 99.3 2.2E-11 4.8E-16 85.7 7.1 92 32-123 85-177 (203)
55 KOG0124 Polypyrimidine tract-b 99.3 5.6E-12 1.2E-16 97.2 4.4 79 41-119 111-189 (544)
56 KOG0415 Predicted peptidyl pro 99.2 1.5E-11 3.2E-16 94.5 6.2 86 39-124 235-320 (479)
57 KOG0117 Heterogeneous nuclear 99.2 2.9E-11 6.3E-16 95.1 7.5 74 44-125 260-333 (506)
58 KOG0127 Nucleolar protein fibr 99.2 5.2E-11 1.1E-15 95.8 8.9 86 39-124 288-379 (678)
59 KOG0124 Polypyrimidine tract-b 99.2 5.4E-11 1.2E-15 91.8 7.4 120 5-124 156-291 (544)
60 KOG4206 Spliceosomal protein s 99.2 9.1E-11 2E-15 85.1 8.0 80 43-125 9-92 (221)
61 KOG0109 RNA-binding protein LA 99.2 3.2E-11 6.8E-16 90.5 5.6 111 6-124 38-151 (346)
62 KOG4208 Nucleolar RNA-binding 99.2 1.2E-10 2.7E-15 83.4 7.7 85 39-123 45-130 (214)
63 KOG4212 RNA-binding protein hn 99.1 4.5E-10 9.7E-15 88.5 8.5 79 43-122 44-123 (608)
64 KOG0110 RNA-binding protein (R 99.1 7.1E-11 1.5E-15 97.3 3.6 122 4-125 560-695 (725)
65 TIGR01642 U2AF_lg U2 snRNP aux 99.1 5.8E-10 1.3E-14 91.4 8.6 76 39-121 171-258 (509)
66 KOG4205 RNA-binding protein mu 99.1 7.9E-10 1.7E-14 85.1 8.4 124 5-129 49-182 (311)
67 KOG0146 RNA-binding protein ET 99.0 8.5E-10 1.8E-14 82.2 6.1 85 42-127 18-105 (371)
68 KOG0110 RNA-binding protein (R 99.0 7.1E-09 1.5E-13 85.7 10.5 82 44-125 516-600 (725)
69 KOG0123 Polyadenylate-binding 99.0 3.8E-09 8.2E-14 83.6 8.6 75 44-124 2-76 (369)
70 KOG0153 Predicted RNA-binding 98.9 5.4E-09 1.2E-13 80.2 8.5 76 41-122 226-302 (377)
71 KOG4205 RNA-binding protein mu 98.9 1.8E-09 4E-14 83.1 5.8 86 42-128 5-90 (311)
72 KOG0132 RNA polymerase II C-te 98.9 3.7E-09 8.1E-14 88.1 7.7 75 43-123 421-495 (894)
73 KOG0116 RasGAP SH3 binding pro 98.9 1E-08 2.3E-13 81.8 9.9 86 39-125 284-369 (419)
74 KOG1457 RNA binding protein (c 98.9 6.3E-08 1.4E-12 70.6 12.4 92 37-128 28-123 (284)
75 KOG0533 RRM motif-containing p 98.8 3.3E-08 7.2E-13 73.6 8.8 85 39-124 79-163 (243)
76 KOG4212 RNA-binding protein hn 98.8 1.5E-08 3.2E-13 80.1 6.8 75 40-119 533-607 (608)
77 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.2E-07 2.6E-12 77.3 11.8 86 39-124 401-486 (940)
78 KOG4209 Splicing factor RNPS1, 98.8 4.8E-08 1E-12 72.6 8.2 84 39-123 97-180 (231)
79 PF04059 RRM_2: RNA recognitio 98.7 1.7E-07 3.6E-12 60.6 9.3 78 44-121 2-85 (97)
80 KOG0106 Alternative splicing f 98.7 3.3E-08 7.1E-13 72.3 5.5 72 44-123 2-73 (216)
81 KOG1548 Transcription elongati 98.7 2.4E-07 5.1E-12 71.3 9.5 82 39-121 130-219 (382)
82 KOG0226 RNA-binding proteins [ 98.5 1.6E-07 3.4E-12 69.6 4.8 86 39-124 186-271 (290)
83 KOG4660 Protein Mei2, essentia 98.5 1.7E-07 3.7E-12 75.9 4.7 73 39-116 71-143 (549)
84 KOG0151 Predicted splicing reg 98.5 3.6E-07 7.8E-12 76.0 6.3 83 40-122 171-256 (877)
85 KOG4454 RNA binding protein (R 98.5 7.9E-08 1.7E-12 69.9 1.9 80 40-121 6-85 (267)
86 KOG0120 Splicing factor U2AF, 98.4 4.6E-07 1E-11 73.6 4.8 87 39-125 285-371 (500)
87 KOG2314 Translation initiation 98.3 4.7E-06 1E-10 68.0 8.8 106 39-146 54-166 (698)
88 KOG1995 Conserved Zn-finger pr 98.2 1E-06 2.3E-11 68.1 3.8 84 41-124 64-155 (351)
89 KOG0112 Large RNA-binding prot 98.2 4.9E-06 1.1E-10 70.9 7.1 115 4-124 413-532 (975)
90 KOG4211 Splicing factor hnRNP- 98.2 1.2E-05 2.7E-10 64.5 8.7 80 42-125 9-88 (510)
91 KOG1190 Polypyrimidine tract-b 98.1 1.6E-05 3.5E-10 62.7 8.1 74 43-121 297-371 (492)
92 PF08777 RRM_3: RNA binding mo 98.1 1.2E-05 2.5E-10 52.9 5.6 70 44-119 2-76 (105)
93 KOG3152 TBP-binding protein, a 98.0 3.5E-06 7.5E-11 62.6 2.5 71 44-114 75-157 (278)
94 KOG4210 Nuclear localization s 98.0 9.6E-06 2.1E-10 62.2 4.9 85 43-128 184-269 (285)
95 KOG0147 Transcriptional coacti 97.9 4E-06 8.7E-11 68.0 2.0 86 39-125 175-260 (549)
96 PF11608 Limkain-b1: Limkain b 97.9 6.5E-05 1.4E-09 46.9 6.6 68 44-121 3-75 (90)
97 COG5175 MOT2 Transcriptional r 97.9 3.5E-05 7.5E-10 59.6 6.4 78 44-121 115-201 (480)
98 KOG4307 RNA binding protein RB 97.9 6.9E-05 1.5E-09 62.8 7.9 81 38-119 862-943 (944)
99 KOG4206 Spliceosomal protein s 97.8 9.4E-05 2E-09 54.1 7.3 77 40-121 143-220 (221)
100 KOG1855 Predicted RNA-binding 97.8 3.9E-05 8.6E-10 60.8 5.0 89 20-108 208-309 (484)
101 KOG4211 Splicing factor hnRNP- 97.8 0.00012 2.7E-09 58.9 7.8 77 41-119 101-178 (510)
102 KOG4849 mRNA cleavage factor I 97.8 3.7E-05 8.1E-10 59.7 4.3 79 39-117 76-156 (498)
103 KOG0106 Alternative splicing f 97.7 8.6E-05 1.9E-09 54.5 5.2 74 40-121 96-169 (216)
104 PF08952 DUF1866: Domain of un 97.7 0.00024 5.3E-09 48.9 7.0 56 59-123 52-107 (146)
105 KOG1457 RNA binding protein (c 97.7 5.6E-05 1.2E-09 55.4 3.9 66 42-111 209-274 (284)
106 KOG1190 Polypyrimidine tract-b 97.7 0.00018 3.9E-09 57.0 6.9 79 40-122 411-490 (492)
107 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.0003 6.5E-09 40.4 5.2 52 44-102 2-53 (53)
108 KOG0128 RNA-binding protein SA 97.4 0.0001 2.3E-09 62.8 2.5 79 43-122 736-814 (881)
109 KOG0120 Splicing factor U2AF, 97.3 0.001 2.2E-08 54.5 7.2 64 59-122 425-491 (500)
110 KOG1456 Heterogeneous nuclear 97.3 0.0022 4.7E-08 50.5 8.6 78 39-121 283-361 (494)
111 KOG1456 Heterogeneous nuclear 97.2 0.0043 9.4E-08 48.9 9.2 81 39-124 116-200 (494)
112 KOG1548 Transcription elongati 97.1 0.002 4.4E-08 50.1 7.0 80 39-122 261-351 (382)
113 KOG0105 Alternative splicing f 97.1 0.01 2.2E-07 42.7 9.9 72 44-122 116-189 (241)
114 KOG0129 Predicted RNA-binding 97.1 0.0019 4E-08 52.6 6.7 66 39-104 366-432 (520)
115 KOG2193 IGF-II mRNA-binding pr 97.0 0.00042 9E-09 55.2 2.5 89 44-138 2-91 (584)
116 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0038 8.3E-08 40.5 6.6 75 43-120 6-89 (100)
117 KOG2416 Acinus (induces apopto 97.0 0.00075 1.6E-08 55.8 3.9 77 39-121 440-520 (718)
118 KOG0129 Predicted RNA-binding 97.0 0.0068 1.5E-07 49.5 8.9 80 39-122 255-340 (520)
119 PF08675 RNA_bind: RNA binding 97.0 0.006 1.3E-07 38.1 6.6 58 41-107 7-64 (87)
120 KOG1365 RNA-binding protein Fu 96.7 0.0021 4.5E-08 50.8 4.1 78 43-121 280-360 (508)
121 PF10309 DUF2414: Protein of u 96.6 0.023 5E-07 33.6 7.1 56 42-105 4-62 (62)
122 KOG1365 RNA-binding protein Fu 96.4 0.017 3.7E-07 45.8 7.1 68 44-113 162-233 (508)
123 PF15023 DUF4523: Protein of u 96.3 0.032 6.9E-07 38.5 7.4 74 39-120 82-159 (166)
124 KOG2202 U2 snRNP splicing fact 96.3 0.0026 5.6E-08 47.6 1.9 62 59-121 84-146 (260)
125 KOG1996 mRNA splicing factor [ 96.1 0.03 6.6E-07 42.9 6.8 64 58-121 301-365 (378)
126 KOG0128 RNA-binding protein SA 96.0 0.00035 7.6E-09 59.7 -4.0 68 44-111 668-735 (881)
127 KOG0112 Large RNA-binding prot 95.9 0.0035 7.5E-08 54.2 1.4 83 39-122 368-450 (975)
128 PF03467 Smg4_UPF3: Smg-4/UPF3 95.7 0.019 4.1E-07 41.1 4.3 82 41-122 5-97 (176)
129 KOG4676 Splicing factor, argin 95.7 0.021 4.4E-07 45.4 4.7 76 45-121 9-87 (479)
130 KOG2068 MOT2 transcription fac 95.4 0.0078 1.7E-07 46.7 1.5 79 44-123 78-163 (327)
131 PF03880 DbpA: DbpA RNA bindin 95.0 0.21 4.5E-06 30.4 6.7 59 53-120 11-74 (74)
132 PF04847 Calcipressin: Calcipr 95.0 0.088 1.9E-06 38.0 5.7 60 57-122 9-70 (184)
133 PF07576 BRAP2: BRCA1-associat 94.1 1.1 2.3E-05 29.6 9.5 68 43-112 13-81 (110)
134 KOG0115 RNA-binding protein p5 93.6 0.11 2.4E-06 39.1 3.9 61 44-105 32-92 (275)
135 KOG4307 RNA binding protein RB 93.5 0.16 3.5E-06 43.4 5.1 82 39-121 430-512 (944)
136 KOG2193 IGF-II mRNA-binding pr 92.6 0.006 1.3E-07 48.9 -4.1 116 2-121 35-155 (584)
137 KOG0804 Cytoplasmic Zn-finger 92.4 0.99 2.1E-05 36.8 7.9 72 39-112 70-142 (493)
138 PF11767 SET_assoc: Histone ly 91.4 1.9 4.2E-05 25.7 6.7 55 54-117 11-65 (66)
139 KOG2135 Proteins containing th 91.4 0.15 3.3E-06 41.5 2.3 70 48-124 377-447 (526)
140 KOG2253 U1 snRNP complex, subu 90.7 0.41 8.9E-06 40.5 4.3 74 37-119 34-107 (668)
141 KOG4285 Mitotic phosphoprotein 90.5 1.4 3.1E-05 34.1 6.7 71 43-121 197-268 (350)
142 KOG2591 c-Mpl binding protein, 90.2 0.81 1.8E-05 38.3 5.5 68 42-116 174-245 (684)
143 KOG4574 RNA-binding protein (c 89.5 0.34 7.3E-06 42.3 2.9 79 41-125 296-376 (1007)
144 KOG4210 Nuclear localization s 87.3 0.33 7.2E-06 37.4 1.5 80 42-121 87-166 (285)
145 KOG4483 Uncharacterized conser 84.6 3.7 8E-05 33.2 6.0 58 39-103 387-445 (528)
146 KOG4660 Protein Mei2, essentia 83.8 2.3 5E-05 35.5 4.8 78 44-121 362-471 (549)
147 KOG4410 5-formyltetrahydrofola 72.0 13 0.00029 28.8 5.4 52 39-96 326-378 (396)
148 KOG4454 RNA binding protein (R 71.5 1.1 2.3E-05 33.4 -0.4 77 37-114 74-154 (267)
149 smart00596 PRE_C2HC PRE_C2HC d 67.5 14 0.00031 22.2 3.9 60 58-120 2-62 (69)
150 KOG4019 Calcineurin-mediated s 66.4 5.9 0.00013 28.5 2.5 78 41-124 8-91 (193)
151 PF07530 PRE_C2HC: Associated 64.2 21 0.00047 21.2 4.3 61 58-121 2-63 (68)
152 KOG4676 Splicing factor, argin 62.0 1.1 2.4E-05 35.9 -2.0 76 42-122 150-225 (479)
153 KOG2318 Uncharacterized conser 61.2 55 0.0012 28.0 7.4 79 41-119 172-304 (650)
154 PF03468 XS: XS domain; Inter 60.9 33 0.00071 22.8 5.1 56 45-103 10-75 (116)
155 PF15513 DUF4651: Domain of un 53.5 36 0.00078 20.0 3.8 20 58-77 9-28 (62)
156 PRK11634 ATP-dependent RNA hel 48.9 1.8E+02 0.0039 25.2 9.6 69 44-121 487-561 (629)
157 COG0724 RNA-binding proteins ( 45.4 31 0.00066 24.8 3.5 53 39-91 221-273 (306)
158 KOG2891 Surface glycoprotein [ 44.4 23 0.00051 27.4 2.6 35 43-77 149-195 (445)
159 PF10567 Nab6_mRNP_bdg: RNA-re 43.7 55 0.0012 25.5 4.5 82 40-121 12-106 (309)
160 PF07292 NID: Nmi/IFP 35 domai 41.1 43 0.00094 21.1 3.1 32 88-120 1-34 (88)
161 PF09707 Cas_Cas2CT1978: CRISP 39.3 79 0.0017 19.9 4.1 49 42-93 24-72 (86)
162 PF02714 DUF221: Domain of unk 39.2 45 0.00098 25.7 3.7 33 88-122 1-33 (325)
163 KOG3424 40S ribosomal protein 35.8 1.4E+02 0.003 20.1 5.5 46 54-100 34-84 (132)
164 PRK10905 cell division protein 30.6 2.8E+02 0.006 22.1 7.0 64 41-108 245-309 (328)
165 PF03439 Spt5-NGN: Early trans 30.2 60 0.0013 20.0 2.5 26 83-108 42-67 (84)
166 COG5193 LHP1 La protein, small 29.9 25 0.00053 28.6 0.8 63 41-103 172-244 (438)
167 PRK11558 putative ssRNA endonu 28.9 1.1E+02 0.0023 19.8 3.5 50 42-94 26-75 (97)
168 KOG1295 Nonsense-mediated deca 28.6 80 0.0017 25.5 3.4 67 43-109 7-76 (376)
169 KOG2295 C2H2 Zn-finger protein 28.2 7.3 0.00016 32.8 -2.4 72 41-112 229-300 (648)
170 KOG2187 tRNA uracil-5-methyltr 26.3 51 0.0011 27.8 2.1 45 84-128 62-106 (534)
171 PHA01632 hypothetical protein 25.9 78 0.0017 18.2 2.2 20 46-65 19-38 (64)
172 PRK14548 50S ribosomal protein 25.1 1.8E+02 0.0039 18.1 5.8 57 45-104 22-80 (84)
173 KOG4365 Uncharacterized conser 24.0 15 0.00032 30.3 -1.3 79 44-123 4-82 (572)
174 PF11823 DUF3343: Protein of u 23.9 1.2E+02 0.0025 18.0 2.9 25 87-111 3-27 (73)
175 KOG0156 Cytochrome P450 CYP2 s 22.5 1.6E+02 0.0035 24.6 4.4 62 44-115 33-97 (489)
176 KOG3003 Molecular chaperone of 21.0 2.3E+02 0.0049 21.4 4.4 51 55-117 162-224 (236)
177 COG5507 Uncharacterized conser 20.7 1.3E+02 0.0029 19.5 2.7 23 83-105 64-86 (117)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.82 E-value=5.4e-19 Score=122.56 Aligned_cols=86 Identities=28% Similarity=0.573 Sum_probs=80.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
...+++|||+|||..+++++|+++|.+||.|..+.++.+..++.++|||||+|.+.++|++|+..|++..|+|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCC
Q 031755 120 AKPGKD 125 (153)
Q Consensus 120 ~~~~~~ 125 (153)
+.++..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 986554
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.74 E-value=1.5e-17 Score=130.12 Aligned_cols=120 Identities=20% Similarity=0.379 Sum_probs=95.8
Q ss_pred hhccccCCCccccc-ccccCCCCCccccccccccC----CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecC
Q 031755 5 AAATVSYPQPMFAN-SLTNRENPCFRTFNLRASLS----NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDE 79 (153)
Q Consensus 5 ~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~ 79 (153)
.+|||.|..++.+. +++..++...........+. .....++|||+|||..+++++|+++|.+||.|..+.++.++
T Consensus 150 GyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~ 229 (346)
T TIGR01659 150 GYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDK 229 (346)
T ss_pred cEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecC
Confidence 36999999987774 44444443332222222221 23346789999999999999999999999999999999998
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHHcCCCccCC--cEEEEEEeCCCC
Q 031755 80 ITKKSKGYAFIQYTSQDDALLALESMDHKNLDG--RLIYVDIAKPGK 124 (153)
Q Consensus 80 ~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g--~~l~v~~~~~~~ 124 (153)
.++.++|+|||+|.+.++|++|++.|++..+.+ +.|.|.++....
T Consensus 230 ~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 230 LTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 899999999999999999999999999998866 689999887543
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.74 E-value=2.4e-17 Score=129.00 Aligned_cols=84 Identities=33% Similarity=0.497 Sum_probs=79.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCC
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKP 122 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 122 (153)
+.+|||+|||..+++++|.++|++||.|..+.|+.++.+|.++|||||+|.+.++|.+|+..|+|..++|+.|+|.+..+
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 44799999999999999999999999999999999998999999999999999999999999999999999999999988
Q ss_pred CCCC
Q 031755 123 GKDR 126 (153)
Q Consensus 123 ~~~~ 126 (153)
+..+
T Consensus 349 ~~~~ 352 (352)
T TIGR01661 349 KAYR 352 (352)
T ss_pred CCCC
Confidence 7653
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.71 E-value=1.1e-16 Score=132.03 Aligned_cols=85 Identities=27% Similarity=0.430 Sum_probs=79.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
..++|||+||+.++++++|+++|+.||.|..+.+.+++.+|..+|||||+|.+.++|.+|+..||+..++|+.|+|..+.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 34799999999999999999999999999999999998889999999999999999999999999999999999999988
Q ss_pred CCCCC
Q 031755 122 PGKDR 126 (153)
Q Consensus 122 ~~~~~ 126 (153)
+.+..
T Consensus 283 ~pP~~ 287 (612)
T TIGR01645 283 TPPDA 287 (612)
T ss_pred CCccc
Confidence 65543
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.70 E-value=1.8e-16 Score=124.16 Aligned_cols=84 Identities=32% Similarity=0.585 Sum_probs=79.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
..++|||+|||..+++++|+++|..||.|..|.|+.++.+|.++|||||+|.+.++|++|+..|+|..+.|+.|.|+++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36799999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred CCCC
Q 031755 122 PGKD 125 (153)
Q Consensus 122 ~~~~ 125 (153)
+...
T Consensus 82 ~~~~ 85 (352)
T TIGR01661 82 PSSD 85 (352)
T ss_pred cccc
Confidence 6543
No 6
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.70 E-value=2.2e-16 Score=95.72 Aligned_cols=70 Identities=40% Similarity=0.704 Sum_probs=66.8
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEE
Q 031755 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIY 116 (153)
Q Consensus 46 v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 116 (153)
|||+|||.++++++|+++|.+||.+..+.+..+ .++..+++|||+|.+.++|++|+..|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 5789999999999999999999999999999999885
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.69 E-value=3.4e-16 Score=122.46 Aligned_cols=86 Identities=23% Similarity=0.438 Sum_probs=80.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||+|||.++++++|+++|..||.|..+.|+.+..++.++|||||+|.+.++|++|+..|++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 55567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EeCCCC
Q 031755 119 IAKPGK 124 (153)
Q Consensus 119 ~~~~~~ 124 (153)
++.+..
T Consensus 183 ~a~p~~ 188 (346)
T TIGR01659 183 YARPGG 188 (346)
T ss_pred cccccc
Confidence 987643
No 8
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=9.2e-16 Score=106.99 Aligned_cols=82 Identities=23% Similarity=0.419 Sum_probs=75.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
+....++||||||+..+++.+|+..|..||.|..++|-..+ .|||||+|++..+|+.|+..|+|..|+|..|+|+
T Consensus 6 ~~~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE 80 (195)
T KOG0107|consen 6 DRNGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVE 80 (195)
T ss_pred ccCCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEE
Confidence 44568999999999999999999999999999999997654 7999999999999999999999999999999999
Q ss_pred EeCCCCC
Q 031755 119 IAKPGKD 125 (153)
Q Consensus 119 ~~~~~~~ 125 (153)
++.-...
T Consensus 81 ~S~G~~r 87 (195)
T KOG0107|consen 81 LSTGRPR 87 (195)
T ss_pred eecCCcc
Confidence 9976554
No 9
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.5e-15 Score=110.91 Aligned_cols=85 Identities=31% Similarity=0.490 Sum_probs=80.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|.|.||+.++++++|+++|.+||.|..+.+.+++.||.++|||||.|.+.+.|++||..|+|.-++.--|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 33456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCC
Q 031755 119 IAKPG 123 (153)
Q Consensus 119 ~~~~~ 123 (153)
|++|+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99875
No 10
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.64 E-value=2.3e-15 Score=123.15 Aligned_cols=83 Identities=29% Similarity=0.458 Sum_probs=78.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
..++|||+|||..+++++|+++|..||.|..+.++.+..+|..+|||||+|.+.+.|..|+..|+|..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 35799999999999999999999999999999999998889999999999999999999999999999999999999986
Q ss_pred CCC
Q 031755 122 PGK 124 (153)
Q Consensus 122 ~~~ 124 (153)
...
T Consensus 374 ~~~ 376 (509)
T TIGR01642 374 VGA 376 (509)
T ss_pred cCC
Confidence 543
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.63 E-value=1.8e-15 Score=122.31 Aligned_cols=117 Identities=28% Similarity=0.389 Sum_probs=92.9
Q ss_pred hhccccCCCcccccccccCCCCCcccccc----------------ccccCCCCCCceEEEcCCCCCCCHHHHHHHhhccC
Q 031755 5 AAATVSYPQPMFANSLTNRENPCFRTFNL----------------RASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFG 68 (153)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G 68 (153)
.+|||.|...+.+......++........ .......+..++|||+|||..+++++|+++|..||
T Consensus 132 g~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G 211 (457)
T TIGR01622 132 GVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFG 211 (457)
T ss_pred eEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcC
Confidence 36899998877775554443321110000 00011123368999999999999999999999999
Q ss_pred ceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 69 EVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 69 ~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
.|..+.+..+..+|.++|||||+|.+.+.|.+|+..|+|..|.|+.|.|.++.
T Consensus 212 ~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 212 DIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 99999999998888999999999999999999999999999999999999976
No 12
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=1e-15 Score=111.22 Aligned_cols=80 Identities=31% Similarity=0.554 Sum_probs=73.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
.-++||||+|++++..++|++.|++||+|++..|+.++.+|+++||+||+|.|.++|.+|++- .+..|+||+..+.++.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 347999999999999999999999999999999999999999999999999999999999983 4557999999998875
Q ss_pred C
Q 031755 122 P 122 (153)
Q Consensus 122 ~ 122 (153)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 13
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.62 E-value=6.6e-15 Score=89.67 Aligned_cols=70 Identities=40% Similarity=0.716 Sum_probs=64.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEE
Q 031755 46 IMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIY 116 (153)
Q Consensus 46 v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 116 (153)
|||+|||+.+++++|+++|..+|.|..+.+..++. +..+++|||+|.+.++|.+|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 89999999999999999999999998999999874
No 14
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.59 E-value=6.2e-15 Score=105.44 Aligned_cols=85 Identities=33% Similarity=0.592 Sum_probs=79.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
....+.|-|.||..-++-++|+.+|++||.|..|.|++++.|+.++|||||.|.+..+|+.|+..|+|..++|+.|+|++
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 34467999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCC
Q 031755 120 AKPGK 124 (153)
Q Consensus 120 ~~~~~ 124 (153)
+....
T Consensus 90 arygr 94 (256)
T KOG4207|consen 90 ARYGR 94 (256)
T ss_pred hhcCC
Confidence 87544
No 15
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=4.5e-15 Score=98.77 Aligned_cols=81 Identities=31% Similarity=0.463 Sum_probs=76.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEe
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 120 (153)
..+++||||||...+++++|.++|+..|+|..|.+-.++.+..++|||||+|-+.++|+.|++.++|..++.+.|++.+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 34689999999999999999999999999999999999988999999999999999999999999999999999999885
Q ss_pred C
Q 031755 121 K 121 (153)
Q Consensus 121 ~ 121 (153)
-
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.58 E-value=1.1e-14 Score=120.29 Aligned_cols=81 Identities=33% Similarity=0.590 Sum_probs=76.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEe
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 120 (153)
...++||||||+..+++++|+++|.+||.|..+.++.++.+|+++|||||+|.+.+.|++|+..|+|..++|+.|+|...
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred C
Q 031755 121 K 121 (153)
Q Consensus 121 ~ 121 (153)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 3
No 17
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.58 E-value=1.9e-14 Score=107.25 Aligned_cols=77 Identities=16% Similarity=0.256 Sum_probs=71.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCC
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKP 122 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 122 (153)
.++|||+||++.+++++|+++|+.||+|..+.|+.+.. .+|||||+|.+.+.|+.|+. |+|..|.|+.|.|..+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998753 56899999999999999996 999999999999999864
Q ss_pred C
Q 031755 123 G 123 (153)
Q Consensus 123 ~ 123 (153)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 18
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.58 E-value=5e-15 Score=122.73 Aligned_cols=84 Identities=26% Similarity=0.465 Sum_probs=78.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
....++|||+||+..+++++|+++|+.||.|..+.++.+ .+|.++|||||+|.+.++|.+|+..|+|..++|+.|.|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 345678999999999999999999999999999999998 5799999999999999999999999999999999999999
Q ss_pred eCCCC
Q 031755 120 AKPGK 124 (153)
Q Consensus 120 ~~~~~ 124 (153)
+..+.
T Consensus 361 a~~k~ 365 (562)
T TIGR01628 361 AQRKE 365 (562)
T ss_pred ccCcH
Confidence 98755
No 19
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=9e-15 Score=108.30 Aligned_cols=114 Identities=25% Similarity=0.489 Sum_probs=90.4
Q ss_pred hhccccCCCcccc-cccccCCCC-----Cc-------c-------ccccccccC-CCCCCceEEEcCCCCCCCHHHHHHH
Q 031755 5 AAATVSYPQPMFA-NSLTNRENP-----CF-------R-------TFNLRASLS-NYPLASRIMVRNLPFTTHEHTLQKE 63 (153)
Q Consensus 5 ~~~~v~~~~~~~~-~~~~~~~~~-----~~-------~-------~~~~~~~~~-~~~~~~~v~v~nlp~~~~~~~l~~~ 63 (153)
.++||.|+....+ +++...++. .. + .+...+... ..+..|+|||||++.-+++++|++.
T Consensus 105 GYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~ 184 (321)
T KOG0148|consen 105 GYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQT 184 (321)
T ss_pred ceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHh
Confidence 4788888885554 666665443 01 1 111122222 5677799999999999999999999
Q ss_pred hhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCCC
Q 031755 64 FSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGK 124 (153)
Q Consensus 64 f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 124 (153)
|..||.|.+|++.+++ ||+||.|+++|.|..||..+|+..|.|+.+++.|-+...
T Consensus 185 Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 185 FSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred cccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 9999999999999874 799999999999999999999999999999999976533
No 20
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=6.1e-14 Score=105.07 Aligned_cols=82 Identities=37% Similarity=0.656 Sum_probs=77.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEe
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 120 (153)
.+=+||||+-|+.++++..|+..|..||.|..|.+++++.||+++|||||+|++..+...|.+..+|..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 34479999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CC
Q 031755 121 KP 122 (153)
Q Consensus 121 ~~ 122 (153)
.-
T Consensus 179 Rg 180 (335)
T KOG0113|consen 179 RG 180 (335)
T ss_pred cc
Confidence 43
No 21
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=2.3e-14 Score=112.99 Aligned_cols=122 Identities=28% Similarity=0.436 Sum_probs=109.4
Q ss_pred hhhccccCCCcccc-cccccCCCCCccccccccccCCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCC
Q 031755 4 AAAATVSYPQPMFA-NSLTNRENPCFRTFNLRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITK 82 (153)
Q Consensus 4 ~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g 82 (153)
..+|||+|..|..+ ++.+..+.....-.+.+.++....+.. |||.||+++++..+|.++|+.||.|++|.+..+. +|
T Consensus 37 lgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~-~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g 114 (369)
T KOG0123|consen 37 LGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSL-VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG 114 (369)
T ss_pred cceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCce-eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC
Confidence 46899999999888 788888988888889998888666554 9999999999999999999999999999999986 35
Q ss_pred CceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCCCCCCCC
Q 031755 83 KSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKDRFGG 129 (153)
Q Consensus 83 ~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~~~~~~ 129 (153)
++|| ||+|++.+.|.+|+..+||..+.|+.|.|.....+..|...
T Consensus 115 -~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~ 159 (369)
T KOG0123|consen 115 -SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAP 159 (369)
T ss_pred -ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhccc
Confidence 9999 99999999999999999999999999999998887766543
No 22
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=2.5e-14 Score=108.35 Aligned_cols=84 Identities=29% Similarity=0.471 Sum_probs=77.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....++|||.|||+...+-||+.+|.+||+|.++.|+.+. ..++||+||+|++.++|++|-.+|+|..+.||+|.|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 44456799999999999999999999999999999999873 6789999999999999999999999999999999999
Q ss_pred EeCCCC
Q 031755 119 IAKPGK 124 (153)
Q Consensus 119 ~~~~~~ 124 (153)
.+..+-
T Consensus 170 ~ATarV 175 (376)
T KOG0125|consen 170 NATARV 175 (376)
T ss_pred ccchhh
Confidence 987653
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.54 E-value=4.8e-14 Score=116.91 Aligned_cols=78 Identities=31% Similarity=0.534 Sum_probs=75.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCC
Q 031755 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKP 122 (153)
Q Consensus 45 ~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 122 (153)
+|||+|||.++++++|+++|.+||.|..|++.++..+++++|||||+|.+.++|++|+..+++..+.|+.|+|.++..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 799999999999999999999999999999999998899999999999999999999999999999999999998753
No 24
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=5.4e-15 Score=106.77 Aligned_cols=88 Identities=28% Similarity=0.534 Sum_probs=82.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
..++||||+|..++++..|...|-+||.|..|.++.+.++++.+||+||+|...++|.+|+..|++..+.|++|+|.+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 031755 122 PGKDRFGG 129 (153)
Q Consensus 122 ~~~~~~~~ 129 (153)
|.+-..+.
T Consensus 89 P~kikegs 96 (298)
T KOG0111|consen 89 PEKIKEGS 96 (298)
T ss_pred CccccCCC
Confidence 86655443
No 25
>smart00362 RRM_2 RNA recognition motif.
Probab=99.53 E-value=1.1e-13 Score=83.11 Aligned_cols=71 Identities=41% Similarity=0.683 Sum_probs=66.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEE
Q 031755 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYV 117 (153)
Q Consensus 45 ~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 117 (153)
+|||+|||..+++++|+++|.+||.+..+.+..+. +..+|+|||+|.+.+.|++|+..+++..+.|+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999988775 778899999999999999999999999999998876
No 26
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=2.1e-15 Score=105.83 Aligned_cols=88 Identities=32% Similarity=0.566 Sum_probs=80.7
Q ss_pred cccC-CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCc
Q 031755 35 ASLS-NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGR 113 (153)
Q Consensus 35 ~~~~-~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~ 113 (153)
.+|+ ....+.-|||||||...++.+|..+|++||+|+.|.++++..||+++||||..|+|-.+---|+..|||..|.|+
T Consensus 26 ~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gR 105 (219)
T KOG0126|consen 26 KSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGR 105 (219)
T ss_pred cchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecce
Confidence 4555 555677999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred EEEEEEeCC
Q 031755 114 LIYVDIAKP 122 (153)
Q Consensus 114 ~l~v~~~~~ 122 (153)
.|+|.....
T Consensus 106 tirVDHv~~ 114 (219)
T KOG0126|consen 106 TIRVDHVSN 114 (219)
T ss_pred eEEeeeccc
Confidence 999977653
No 27
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=8.7e-14 Score=93.50 Aligned_cols=86 Identities=23% Similarity=0.353 Sum_probs=79.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
+..+-.|||.++....++++|.+.|..||+|..+.+-.++-||..+||++|+|++...|++|+..+||..+.|..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 33456899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eCCCCC
Q 031755 120 AKPGKD 125 (153)
Q Consensus 120 ~~~~~~ 125 (153)
+..+..
T Consensus 149 ~Fv~gp 154 (170)
T KOG0130|consen 149 CFVKGP 154 (170)
T ss_pred EEecCC
Confidence 975443
No 28
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=1e-13 Score=97.76 Aligned_cols=78 Identities=27% Similarity=0.459 Sum_probs=70.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCC
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKP 122 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 122 (153)
.++|||||||.++.+.+|+++|.+||.|..|.+..-+ ....||||+|++...|+.||..-+|..++|++|+|+++..
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 5799999999999999999999999999999986542 3467999999999999999999999999999999999875
Q ss_pred C
Q 031755 123 G 123 (153)
Q Consensus 123 ~ 123 (153)
.
T Consensus 83 g 83 (241)
T KOG0105|consen 83 G 83 (241)
T ss_pred C
Confidence 4
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.50 E-value=1.9e-13 Score=112.68 Aligned_cols=75 Identities=39% Similarity=0.660 Sum_probs=69.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcc--CceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEe
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAF--GEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~--G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 120 (153)
.++|||+||+..+++++|+++|.+| |+|..+.+++ +||||+|.+.++|++|++.|++..|+|+.|+|.++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4689999999999999999999999 9999987753 59999999999999999999999999999999999
Q ss_pred CCCCC
Q 031755 121 KPGKD 125 (153)
Q Consensus 121 ~~~~~ 125 (153)
++...
T Consensus 305 kp~~~ 309 (578)
T TIGR01648 305 KPVDK 309 (578)
T ss_pred cCCCc
Confidence 87544
No 30
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.50 E-value=8.9e-14 Score=110.98 Aligned_cols=86 Identities=30% Similarity=0.498 Sum_probs=81.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCC
Q 031755 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPG 123 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 123 (153)
+.|||||+|.++++++|..+|+..|.|..++++.|+++|+.+||+|++|.+.+.|+.|++.|+|..+.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCC
Q 031755 124 KDRFGG 129 (153)
Q Consensus 124 ~~~~~~ 129 (153)
..+.+.
T Consensus 99 ~~~~~~ 104 (435)
T KOG0108|consen 99 KNAERS 104 (435)
T ss_pred chhHHH
Confidence 664433
No 31
>PLN03213 repressor of silencing 3; Provisional
Probab=99.50 E-value=1.2e-13 Score=109.72 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=71.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCH--HHHHHHHHHcCCCccCCcEEEEEE
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQ--DDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~--~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
...+||||||+..+++++|...|..||.|..+.|+ +++| +|||||+|.+. .++.+|+..|+|..+.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 35699999999999999999999999999999999 4467 99999999977 789999999999999999999999
Q ss_pred eCC
Q 031755 120 AKP 122 (153)
Q Consensus 120 ~~~ 122 (153)
+++
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 876
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=6.1e-14 Score=103.94 Aligned_cols=89 Identities=30% Similarity=0.522 Sum_probs=81.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCC
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKP 122 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 122 (153)
-.-|||+.|.+.++-++|++.|.+||+|..++|+++..|++++||+||.|..+++|++||..|+|.=|++|.|+..|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCC
Q 031755 123 GKDRFGGYP 131 (153)
Q Consensus 123 ~~~~~~~~~ 131 (153)
+.......+
T Consensus 142 Kp~e~n~~~ 150 (321)
T KOG0148|consen 142 KPSEMNGKP 150 (321)
T ss_pred CccccCCCC
Confidence 774444333
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.49 E-value=2.5e-13 Score=109.93 Aligned_cols=83 Identities=28% Similarity=0.443 Sum_probs=77.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEe
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 120 (153)
...++|||+|||..+++++|+++|..||.|..|.++.++.+|.++|||||+|.+.++|++|+. |+|..+.|+.|.|..+
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 346799999999999999999999999999999999998899999999999999999999997 8999999999999887
Q ss_pred CCCC
Q 031755 121 KPGK 124 (153)
Q Consensus 121 ~~~~ 124 (153)
....
T Consensus 166 ~~~~ 169 (457)
T TIGR01622 166 QAEK 169 (457)
T ss_pred chhh
Confidence 6543
No 34
>smart00360 RRM RNA recognition motif.
Probab=99.49 E-value=2.8e-13 Score=81.02 Aligned_cols=71 Identities=46% Similarity=0.739 Sum_probs=66.3
Q ss_pred EcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 48 VRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 48 v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
|+|||..+++++|+.+|.+||.+..+.+..++.++..+|+|||+|.+.+.|.+|+..+++..+.|+.+.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999887778999999999999999999999999999999988763
No 35
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.49 E-value=3.4e-13 Score=99.27 Aligned_cols=77 Identities=13% Similarity=0.150 Sum_probs=70.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
.+.+|||+||++.+++++|+++|+.||+|..|.++++ +...++|||+|.+++.++.|+. |+|..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4679999999999999999999999999999999987 4455899999999999999996 99999999999998765
Q ss_pred C
Q 031755 122 P 122 (153)
Q Consensus 122 ~ 122 (153)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 3
No 36
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.49 E-value=2.2e-13 Score=112.38 Aligned_cols=80 Identities=25% Similarity=0.460 Sum_probs=72.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccC-CcEEEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLD-GRLIYVD 118 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~-g~~l~v~ 118 (153)
+...++|||+|||.++++++|+++|.+||.|..++|+++ .+|.++|||||+|.+.++|++|++.|++..+. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 445689999999999999999999999999999999999 68999999999999999999999999999874 6766665
Q ss_pred Ee
Q 031755 119 IA 120 (153)
Q Consensus 119 ~~ 120 (153)
.+
T Consensus 134 ~S 135 (578)
T TIGR01648 134 IS 135 (578)
T ss_pred cc
Confidence 54
No 37
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=6.6e-13 Score=85.44 Aligned_cols=82 Identities=23% Similarity=0.435 Sum_probs=73.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.......+||.|||..++.++..++|..||.|..|+|-..+ ..+|-|||.|++..+|.+|+..|+|..++++.+.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 34456799999999999999999999999999999997654 458999999999999999999999999999999998
Q ss_pred EeCCC
Q 031755 119 IAKPG 123 (153)
Q Consensus 119 ~~~~~ 123 (153)
+.++.
T Consensus 91 yyq~~ 95 (124)
T KOG0114|consen 91 YYQPE 95 (124)
T ss_pred ecCHH
Confidence 87653
No 38
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=4.4e-13 Score=105.16 Aligned_cols=85 Identities=22% Similarity=0.495 Sum_probs=79.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCcc-CCcEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNL-DGRLIYV 117 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i-~g~~l~v 117 (153)
.++.++-||||.||.++.+++|..+|.+-|+|-.++++.++.+|..+|||||.|.+++.|++|++.||+..| .|+.|.|
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 557789999999999999999999999999999999999999999999999999999999999999999977 6888988
Q ss_pred EEeCCC
Q 031755 118 DIAKPG 123 (153)
Q Consensus 118 ~~~~~~ 123 (153)
+.+...
T Consensus 159 c~Svan 164 (506)
T KOG0117|consen 159 CVSVAN 164 (506)
T ss_pred EEeeec
Confidence 887653
No 39
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.45 E-value=7.4e-13 Score=98.41 Aligned_cols=80 Identities=39% Similarity=0.705 Sum_probs=76.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCC
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKP 122 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 122 (153)
.++|||+|||..+++++|.++|..||.+..+.+..++.++..+|+|||.|.+.+.|..|+..+++..+.|+.|.|....+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 68999999999999999999999999999999999988899999999999999999999999999999999999999653
No 40
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.44 E-value=2.2e-12 Score=77.83 Aligned_cols=74 Identities=41% Similarity=0.706 Sum_probs=67.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 45 ~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
+|+|+|||..+++++|+.+|..+|.+..+.+..+.. +..+++|||+|.+.+.|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD-TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999998764 36789999999999999999999999999999988763
No 41
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=7.6e-14 Score=109.04 Aligned_cols=90 Identities=22% Similarity=0.461 Sum_probs=80.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCc-cCC--cEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKN-LDG--RLI 115 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~-i~g--~~l 115 (153)
+....+++|||.|+...+|.+++++|.+||.|..|.|+++. .|.+||++||.|.+++.|..|++.|||.. +.| .+|
T Consensus 120 r~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PL 198 (510)
T KOG0144|consen 120 RIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPL 198 (510)
T ss_pred ccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCce
Confidence 44557899999999999999999999999999999999997 49999999999999999999999999994 555 589
Q ss_pred EEEEeCCCCCCCCC
Q 031755 116 YVDIAKPGKDRFGG 129 (153)
Q Consensus 116 ~v~~~~~~~~~~~~ 129 (153)
-|+|+.+++++..+
T Consensus 199 VVkFADtqkdk~~~ 212 (510)
T KOG0144|consen 199 VVKFADTQKDKDGK 212 (510)
T ss_pred EEEecccCCCchHH
Confidence 99999988876544
No 42
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=2e-13 Score=100.91 Aligned_cols=120 Identities=22% Similarity=0.364 Sum_probs=97.9
Q ss_pred hhccccCCCcccc-cccccCCCCCccccccccccC----CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecC
Q 031755 5 AAATVSYPQPMFA-NSLTNRENPCFRTFNLRASLS----NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDE 79 (153)
Q Consensus 5 ~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~ 79 (153)
.++||++..|..+ +++...++......-++.+.. ....+.++||.+||..++..+|+.+|++||.|...+|+.+.
T Consensus 84 GYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dq 163 (360)
T KOG0145|consen 84 GYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQ 163 (360)
T ss_pred ccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhc
Confidence 5789999998877 555555555444443333333 33345799999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHHcCCCccCC--cEEEEEEeCCCC
Q 031755 80 ITKKSKGYAFIQYTSQDDALLALESMDHKNLDG--RLIYVDIAKPGK 124 (153)
Q Consensus 80 ~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g--~~l~v~~~~~~~ 124 (153)
.+|.++|.+||.|....+|+.||..|||..-.| .+|.|+++....
T Consensus 164 vtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 164 VTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred ccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcc
Confidence 999999999999999999999999999997665 579999987544
No 43
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.42 E-value=1.9e-12 Score=105.73 Aligned_cols=79 Identities=28% Similarity=0.311 Sum_probs=72.1
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 40 YPLASRIMVRNLPF-TTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 40 ~~~~~~v~v~nlp~-~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.+.+++|||+||+. .+++++|+.+|+.||.|..+.++.++ +|+|||+|.+.++|..|+..|+|..|.|+.|+|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 45678999999998 69999999999999999999998763 5899999999999999999999999999999999
Q ss_pred EeCCC
Q 031755 119 IAKPG 123 (153)
Q Consensus 119 ~~~~~ 123 (153)
+++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 98643
No 44
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=1.1e-12 Score=97.02 Aligned_cols=87 Identities=31% Similarity=0.541 Sum_probs=81.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
....+++.|.=||..+++++++.+|.+.|+|.+|.+++++.+|.+.||+||.|-++++|++|+..|||..+-.++|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 031755 120 AKPGKDR 126 (153)
Q Consensus 120 ~~~~~~~ 126 (153)
++|..+.
T Consensus 118 ARPSs~~ 124 (360)
T KOG0145|consen 118 ARPSSDS 124 (360)
T ss_pred ccCChhh
Confidence 9986653
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.38 E-value=3.1e-12 Score=104.43 Aligned_cols=77 Identities=19% Similarity=0.319 Sum_probs=69.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHc--CCCccCCcEEEEEE
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM--DHKNLDGRLIYVDI 119 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l--~~~~i~g~~l~v~~ 119 (153)
++++|||+|||..+++++|+++|.+||.|..+.++++ +++|||+|.+.++|++|+..+ ++..+.|+.|+|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3679999999999999999999999999999998864 479999999999999999874 67889999999999
Q ss_pred eCCCC
Q 031755 120 AKPGK 124 (153)
Q Consensus 120 ~~~~~ 124 (153)
+..+.
T Consensus 75 s~~~~ 79 (481)
T TIGR01649 75 STSQE 79 (481)
T ss_pred cCCcc
Confidence 87543
No 46
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=1.3e-12 Score=97.01 Aligned_cols=88 Identities=20% Similarity=0.402 Sum_probs=82.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
+-+.+|+|||=+||.+..+.+|..+|-.||.|++..+.-++-|..++.|+||.|.++.+++.||..|||++|+-++|+|+
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 66778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCC
Q 031755 119 IAKPGKDR 126 (153)
Q Consensus 119 ~~~~~~~~ 126 (153)
+.+|+...
T Consensus 361 LKRPkdan 368 (371)
T KOG0146|consen 361 LKRPKDAN 368 (371)
T ss_pred hcCccccC
Confidence 98876543
No 47
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.33 E-value=3.2e-12 Score=89.92 Aligned_cols=80 Identities=30% Similarity=0.457 Sum_probs=77.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
...+||||||+..++++.|.++|-+.|.|+.+.+++++.++..+||||++|.+.++|+-|++.|+...+-|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999887
No 48
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=8.1e-12 Score=100.33 Aligned_cols=82 Identities=35% Similarity=0.582 Sum_probs=75.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCC
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKP 122 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 122 (153)
.-+|+|+|||+.+...+|+.+|+.||.+..+.|++..+ |..+|||||+|.....|..|++.+|+..|+|++|-|.|+-+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 45899999999999999999999999999999998775 55559999999999999999999999999999999999977
Q ss_pred CCC
Q 031755 123 GKD 125 (153)
Q Consensus 123 ~~~ 125 (153)
+..
T Consensus 196 Kd~ 198 (678)
T KOG0127|consen 196 KDT 198 (678)
T ss_pred ccc
Confidence 554
No 49
>smart00361 RRM_1 RNA recognition motif.
Probab=99.30 E-value=1.9e-11 Score=74.63 Aligned_cols=61 Identities=26% Similarity=0.602 Sum_probs=54.2
Q ss_pred HHHHHHHhh----ccCceeEEE-EEecCCC--CCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEE
Q 031755 57 EHTLQKEFS----AFGEVAEVK-LVKDEIT--KKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYV 117 (153)
Q Consensus 57 ~~~l~~~f~----~~G~i~~~~-i~~~~~~--g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 117 (153)
+++|+++|. .||.+..+. +..++.+ +.++|++||+|.+.++|.+|+..|+|..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 467888888 999999985 6666656 889999999999999999999999999999999875
No 50
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=1.5e-11 Score=96.35 Aligned_cols=86 Identities=30% Similarity=0.544 Sum_probs=76.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCc-cCC--cEEEE
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKN-LDG--RLIYV 117 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~-i~g--~~l~v 117 (153)
...-++|||.||..++|.||+.+|++||.|-+|.+++|+.|+.++|+|||.|.+.++|.+|+..|++.. +-| +.|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 334589999999999999999999999999999999999999999999999999999999999998773 544 67888
Q ss_pred EEeCCCCCC
Q 031755 118 DIAKPGKDR 126 (153)
Q Consensus 118 ~~~~~~~~~ 126 (153)
+++....+|
T Consensus 112 k~Ad~E~er 120 (510)
T KOG0144|consen 112 KYADGERER 120 (510)
T ss_pred cccchhhhc
Confidence 888766555
No 51
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.29 E-value=2.4e-11 Score=70.86 Aligned_cols=56 Identities=39% Similarity=0.736 Sum_probs=50.3
Q ss_pred HHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEe
Q 031755 60 LQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120 (153)
Q Consensus 60 l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 120 (153)
|.++|++||+|..+.+.... +++|||+|.+.++|+.|+..|+|..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 57899999999999997653 589999999999999999999999999999999985
No 52
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.26 E-value=8.7e-12 Score=100.01 Aligned_cols=84 Identities=37% Similarity=0.580 Sum_probs=77.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEe
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 120 (153)
.+...+|||||...+++.+|+.+|.+||+|..|.+..+.+||.++||+|++|.+.+.|.+|++.|||+.|.|+.|+|..-
T Consensus 276 ~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred cchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 33445999999999999999999999999999999999889999999999999999999999999999999999999876
Q ss_pred CCCC
Q 031755 121 KPGK 124 (153)
Q Consensus 121 ~~~~ 124 (153)
..+-
T Consensus 356 ~~r~ 359 (549)
T KOG0147|consen 356 TERV 359 (549)
T ss_pred eeec
Confidence 5443
No 53
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.26 E-value=2.1e-11 Score=91.37 Aligned_cols=74 Identities=27% Similarity=0.482 Sum_probs=69.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCC
Q 031755 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPG 123 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 123 (153)
.++||||||..+++.+|+.+|.+||+|.+|+|+++ |+||-.++...++.||+.|+|..|+|..|.|+-++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999976 9999999999999999999999999999999999887
Q ss_pred CC
Q 031755 124 KD 125 (153)
Q Consensus 124 ~~ 125 (153)
..
T Consensus 75 sk 76 (346)
T KOG0109|consen 75 SK 76 (346)
T ss_pred CC
Confidence 43
No 54
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.25 E-value=2.2e-11 Score=85.71 Aligned_cols=92 Identities=32% Similarity=0.401 Sum_probs=81.8
Q ss_pred ccccccCCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeE-EEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCcc
Q 031755 32 NLRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAE-VKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNL 110 (153)
Q Consensus 32 ~~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~-~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i 110 (153)
.......+...+.++||+||.+++++..|.+.|+.||.+.. -.+.++..||.++|++|+.|.+.+.+.+|++.++|..+
T Consensus 85 kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l 164 (203)
T KOG0131|consen 85 KASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYL 164 (203)
T ss_pred ecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchh
Confidence 33334456777899999999999999999999999998886 58888888999999999999999999999999999999
Q ss_pred CCcEEEEEEeCCC
Q 031755 111 DGRLIYVDIAKPG 123 (153)
Q Consensus 111 ~g~~l~v~~~~~~ 123 (153)
+++++.|.++..+
T Consensus 165 ~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 165 CNRPITVSYAFKK 177 (203)
T ss_pred cCCceEEEEEEec
Confidence 9999999998643
No 55
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=5.6e-12 Score=97.18 Aligned_cols=79 Identities=34% Similarity=0.603 Sum_probs=75.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
...++||||.+...+.++.|+..|.+||.|.+|.+..++.|++.+||+||+|+-++.|+-|++.|||..++|+.|+|..
T Consensus 111 aiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 111 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999999999874
No 56
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.5e-11 Score=94.48 Aligned_cols=86 Identities=28% Similarity=0.412 Sum_probs=80.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.-++.+.|||-.|.+-+++++|.-+|+.||+|..|.++++..||.+..||||+|++.+++++|.-.|++.-|+.++|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 45566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCC
Q 031755 119 IAKPGK 124 (153)
Q Consensus 119 ~~~~~~ 124 (153)
++++-.
T Consensus 315 FSQSVs 320 (479)
T KOG0415|consen 315 FSQSVS 320 (479)
T ss_pred hhhhhh
Confidence 987543
No 57
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=2.9e-11 Score=95.09 Aligned_cols=74 Identities=42% Similarity=0.647 Sum_probs=69.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCC
Q 031755 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPG 123 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 123 (153)
..|||.||+.++|++.|++.|..||+|..|..+++ ||||-|.+.++|-+|++.+||..|+|..|.|.+++|.
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 58999999999999999999999999999988755 9999999999999999999999999999999999975
Q ss_pred CC
Q 031755 124 KD 125 (153)
Q Consensus 124 ~~ 125 (153)
.+
T Consensus 332 ~k 333 (506)
T KOG0117|consen 332 DK 333 (506)
T ss_pred hh
Confidence 54
No 58
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=5.2e-11 Score=95.77 Aligned_cols=86 Identities=43% Similarity=0.597 Sum_probs=77.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHc-----CC-CccCC
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM-----DH-KNLDG 112 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l-----~~-~~i~g 112 (153)
+.....+|||+|||.++++++|...|.+||+|....++.++.|+.++|.|||.|.+...|++||... .| ..++|
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 4555689999999999999999999999999999999999999999999999999999999999976 23 46889
Q ss_pred cEEEEEEeCCCC
Q 031755 113 RLIYVDIAKPGK 124 (153)
Q Consensus 113 ~~l~v~~~~~~~ 124 (153)
+.|.|..+-++.
T Consensus 368 R~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 368 RLLKVTLAVTRK 379 (678)
T ss_pred cEEeeeeccchH
Confidence 999998887654
No 59
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=5.4e-11 Score=91.84 Aligned_cols=120 Identities=25% Similarity=0.337 Sum_probs=93.6
Q ss_pred hhccccCCCcccc-cccccCCCC--------Cccccccccc-------cCCCCCCceEEEcCCCCCCCHHHHHHHhhccC
Q 031755 5 AAATVSYPQPMFA-NSLTNRENP--------CFRTFNLRAS-------LSNYPLASRIMVRNLPFTTHEHTLQKEFSAFG 68 (153)
Q Consensus 5 ~~~~v~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~-------~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G 68 (153)
++|||.+..|+.+ .+.+..++. +.++...... ..+-..-++|||..+.++.+++||+.+|..||
T Consensus 156 gFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG 235 (544)
T KOG0124|consen 156 GFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG 235 (544)
T ss_pred ceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhc
Confidence 4789999998876 445544433 1121111111 11222236999999999999999999999999
Q ss_pred ceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCCC
Q 031755 69 EVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGK 124 (153)
Q Consensus 69 ~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 124 (153)
+|+.|.+-+.+-.+..+||+|++|.+..+...|+..||=+.++|.-|+|.-+-..+
T Consensus 236 ~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 236 EIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred ceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCC
Confidence 99999999998778899999999999999999999999999999999997765443
No 60
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.19 E-value=9.1e-11 Score=85.13 Aligned_cols=80 Identities=25% Similarity=0.442 Sum_probs=73.5
Q ss_pred CceEEEcCCCCCCCHHHHHH----HhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 43 ASRIMVRNLPFTTHEHTLQK----EFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~----~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
..||||.||+..+..++|+. +|++||+|..|.... +.+.+|-|||.|.+.+.|..|++.|+|+.+-|+.++|+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 44999999999999998888 999999999998865 46789999999999999999999999999999999999
Q ss_pred EeCCCCC
Q 031755 119 IAKPGKD 125 (153)
Q Consensus 119 ~~~~~~~ 125 (153)
++.++..
T Consensus 86 yA~s~sd 92 (221)
T KOG4206|consen 86 YAKSDSD 92 (221)
T ss_pred cccCccc
Confidence 9988765
No 61
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.19 E-value=3.2e-11 Score=90.47 Aligned_cols=111 Identities=23% Similarity=0.370 Sum_probs=89.7
Q ss_pred hccccCCCccccccccc-CC--CCCccccccccccCCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCC
Q 031755 6 AATVSYPQPMFANSLTN-RE--NPCFRTFNLRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITK 82 (153)
Q Consensus 6 ~~~v~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g 82 (153)
++||............. .. +.......+.++..++..+++++||||.+..+..+++..|.+||.+.+|+|+++
T Consensus 38 YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd---- 113 (346)
T KOG0109|consen 38 YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD---- 113 (346)
T ss_pred cceEEeecccccHHHHhhcccceecceEEEEEeccccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc----
Confidence 56777766433322222 21 122345566667777888999999999999999999999999999999999875
Q ss_pred CceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCCC
Q 031755 83 KSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGK 124 (153)
Q Consensus 83 ~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 124 (153)
|+||-|.-.+.|..|++.|++..+.|++++|+++.++-
T Consensus 114 ----y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 114 ----YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred ----eeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 99999999999999999999999999999999988654
No 62
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.17 E-value=1.2e-10 Score=83.38 Aligned_cols=85 Identities=27% Similarity=0.477 Sum_probs=77.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcc-CceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAF-GEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYV 117 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~-G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 117 (153)
.......+|++.+|..+-+.++..+|.+| |.+..+++-+++.||.++|||||+|++++.|.-|.+.||+.-+.|+-|.+
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 33445689999999999999999999999 77778888899999999999999999999999999999999999999999
Q ss_pred EEeCCC
Q 031755 118 DIAKPG 123 (153)
Q Consensus 118 ~~~~~~ 123 (153)
.+-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 998776
No 63
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.10 E-value=4.5e-10 Score=88.49 Aligned_cols=79 Identities=24% Similarity=0.457 Sum_probs=72.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhh-ccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFS-AFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
.+.+||.|||.+..+.+|++++. +.|+|..|.++.+. +|+++|++.|+|++++.+++|++.|+.+.++|+.|.|+-..
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 35699999999999999999997 77999999999986 69999999999999999999999999999999999997655
Q ss_pred C
Q 031755 122 P 122 (153)
Q Consensus 122 ~ 122 (153)
.
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 4
No 64
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=7.1e-11 Score=97.27 Aligned_cols=122 Identities=22% Similarity=0.415 Sum_probs=92.7
Q ss_pred hhhccccCCCccccccccc-CCCCCcccc--c-----------cccccCCCCCCceEEEcCCCCCCCHHHHHHHhhccCc
Q 031755 4 AAAATVSYPQPMFANSLTN-RENPCFRTF--N-----------LRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGE 69 (153)
Q Consensus 4 ~~~~~v~~~~~~~~~~~~~-~~~~~~~~~--~-----------~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~ 69 (153)
..++||-|..++.+..+.. .++....-. . ..-........+.|+|.|||...+..+++++|..||.
T Consensus 560 mGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGq 639 (725)
T KOG0110|consen 560 MGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQ 639 (725)
T ss_pred cceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccc
Confidence 4678999999886643333 232211100 0 0001112223679999999999999999999999999
Q ss_pred eeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCCCC
Q 031755 70 VAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKD 125 (153)
Q Consensus 70 i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~~ 125 (153)
+..++|+.-...+..+|||||.|-+++.|.+|+..|...-+.|++|.++|+.....
T Consensus 640 lksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 640 LKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred eeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccchH
Confidence 99999998644456699999999999999999999999999999999999987553
No 65
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.07 E-value=5.8e-10 Score=91.42 Aligned_cols=76 Identities=20% Similarity=0.364 Sum_probs=61.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcc------------CceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcC
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAF------------GEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMD 106 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~------------G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~ 106 (153)
.....++|||||||..+++++|..+|..+ +.|..+.+ +..+|||||+|.+.+.|..|+. |+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 44456799999999999999999999875 22333333 3457899999999999999995 99
Q ss_pred CCccCCcEEEEEEeC
Q 031755 107 HKNLDGRLIYVDIAK 121 (153)
Q Consensus 107 ~~~i~g~~l~v~~~~ 121 (153)
|..+.|..|.|....
T Consensus 244 g~~~~g~~l~v~r~~ 258 (509)
T TIGR01642 244 SIIYSNVFLKIRRPH 258 (509)
T ss_pred CeEeeCceeEecCcc
Confidence 999999999986543
No 66
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.06 E-value=7.9e-10 Score=85.13 Aligned_cols=124 Identities=23% Similarity=0.358 Sum_probs=95.5
Q ss_pred hhccccCCCcccccccccC-CCCCc-ccccc-ccc-------cCCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEE
Q 031755 5 AAATVSYPQPMFANSLTNR-ENPCF-RTFNL-RAS-------LSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVK 74 (153)
Q Consensus 5 ~~~~v~~~~~~~~~~~~~~-~~~~~-~~~~~-~~~-------~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~ 74 (153)
...||.|..|+.+...... .+... +..+. ++. ........+||||.||.++++++++++|.+||.|..+.
T Consensus 49 gFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~ 128 (311)
T KOG4205|consen 49 GFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVV 128 (311)
T ss_pred cccceecCCCcchheeecccccccCCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeE
Confidence 4679999987777544443 33211 11111 111 11233355999999999999999999999999999999
Q ss_pred EEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCCCCCCCC
Q 031755 75 LVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKDRFGG 129 (153)
Q Consensus 75 i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~~~~~~ 129 (153)
++.+..++..+||+||.|.+.+.+.+++. .....|+|+.+.|..+.|+......
T Consensus 129 ~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 129 IMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred EeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccchhhcccc
Confidence 99999999999999999999999999987 5777899999999999987765443
No 67
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=8.5e-10 Score=82.17 Aligned_cols=85 Identities=24% Similarity=0.440 Sum_probs=76.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCc-cCC--cEEEEE
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKN-LDG--RLIYVD 118 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~-i~g--~~l~v~ 118 (153)
..+++|||-|...-.|+|++.+|..||.|.+|.+.+.++ |.++|++||.|.+..+|+.||..|+|.. +-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 578999999999999999999999999999999999974 9999999999999999999999999985 344 578899
Q ss_pred EeCCCCCCC
Q 031755 119 IAKPGKDRF 127 (153)
Q Consensus 119 ~~~~~~~~~ 127 (153)
++..+++|.
T Consensus 97 ~ADTdkER~ 105 (371)
T KOG0146|consen 97 FADTDKERT 105 (371)
T ss_pred eccchHHHH
Confidence 988766643
No 68
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=7.1e-09 Score=85.72 Aligned_cols=82 Identities=26% Similarity=0.462 Sum_probs=72.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCC---CceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEe
Q 031755 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITK---KSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g---~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 120 (153)
+++||.||+.+++.+++...|...|.|.++.|...+..- -+.||+||+|.+.++|+.|++.|+|..|+|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 449999999999999999999999999999988765321 24599999999999999999999999999999999998
Q ss_pred CCCCC
Q 031755 121 KPGKD 125 (153)
Q Consensus 121 ~~~~~ 125 (153)
..++.
T Consensus 596 ~~k~~ 600 (725)
T KOG0110|consen 596 ENKPA 600 (725)
T ss_pred cCccc
Confidence 84433
No 69
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=3.8e-09 Score=83.55 Aligned_cols=75 Identities=28% Similarity=0.452 Sum_probs=69.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCC
Q 031755 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPG 123 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 123 (153)
..+||| +++++..|.++|+++|.++++++.++. | +.|||||.|.+++.|++|+..+|...+.|+.++|-++..+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 899999999999999999999999997 5 9999999999999999999999999999999999987654
Q ss_pred C
Q 031755 124 K 124 (153)
Q Consensus 124 ~ 124 (153)
.
T Consensus 76 ~ 76 (369)
T KOG0123|consen 76 P 76 (369)
T ss_pred C
Confidence 4
No 70
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.94 E-value=5.4e-09 Score=80.19 Aligned_cols=76 Identities=18% Similarity=0.409 Sum_probs=67.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHc-CCCccCCcEEEEEE
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM-DHKNLDGRLIYVDI 119 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l-~~~~i~g~~l~v~~ 119 (153)
...++|||++|...+++.+|++.|.+||+|.++.+...+ +.|||+|.+.++|+.|.+.. +...|+|.+|.|.|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 344799999999999999999999999999999998763 59999999999999887765 44478999999999
Q ss_pred eCC
Q 031755 120 AKP 122 (153)
Q Consensus 120 ~~~ 122 (153)
..+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 988
No 71
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.93 E-value=1.8e-09 Score=83.14 Aligned_cols=86 Identities=26% Similarity=0.495 Sum_probs=77.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
..+++|||+|.++++++.|++.|.+||++..+.+++++.++.++||+||+|.+.+...+++. .....|+|+.|.+.-+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 57899999999999999999999999999999999999999999999999999888888877 45667999999998888
Q ss_pred CCCCCCC
Q 031755 122 PGKDRFG 128 (153)
Q Consensus 122 ~~~~~~~ 128 (153)
++.....
T Consensus 84 ~r~~~~~ 90 (311)
T KOG4205|consen 84 SREDQTK 90 (311)
T ss_pred Ccccccc
Confidence 7665443
No 72
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.92 E-value=3.7e-09 Score=88.13 Aligned_cols=75 Identities=25% Similarity=0.433 Sum_probs=69.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCC
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKP 122 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 122 (153)
++|||||+|+..+++.+|..+|+.||+|.+|.+... +++|||.+...++|.+|+..|.+..+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 379999999999999999999999999999988654 68999999999999999999999999999999999864
Q ss_pred C
Q 031755 123 G 123 (153)
Q Consensus 123 ~ 123 (153)
+
T Consensus 495 ~ 495 (894)
T KOG0132|consen 495 K 495 (894)
T ss_pred C
Confidence 3
No 73
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.92 E-value=1e-08 Score=81.78 Aligned_cols=86 Identities=22% Similarity=0.359 Sum_probs=70.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
......+|||+|||.+++..+|+.+|..||.|....|..-.-.++...|+||+|.+.+.++.++.+ +-..+++++|.|+
T Consensus 284 ~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 284 PRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVE 362 (419)
T ss_pred eeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEE
Confidence 444456699999999999999999999999999877665321234348999999999999999995 5778999999999
Q ss_pred EeCCCCC
Q 031755 119 IAKPGKD 125 (153)
Q Consensus 119 ~~~~~~~ 125 (153)
-.++..+
T Consensus 363 ek~~~~~ 369 (419)
T KOG0116|consen 363 EKRPGFR 369 (419)
T ss_pred ecccccc
Confidence 9887554
No 74
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.90 E-value=6.3e-08 Score=70.61 Aligned_cols=92 Identities=21% Similarity=0.266 Sum_probs=71.7
Q ss_pred cCCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEe-cCCCCCceeEEEEEecCHHHHHHHHHHcCCCccC---C
Q 031755 37 LSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVK-DEITKKSKGYAFIQYTSQDDALLALESMDHKNLD---G 112 (153)
Q Consensus 37 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~-~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~---g 112 (153)
.+.....+|+||.+||.++.-.+|..+|..|-=-..+.+.. ++..+.++-++|+.|.+.+.|.+|+..|||..++ +
T Consensus 28 ~~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~ 107 (284)
T KOG1457|consen 28 ADEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETG 107 (284)
T ss_pred cccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccC
Confidence 33555678999999999999999999999875334443332 2323446689999999999999999999999876 6
Q ss_pred cEEEEEEeCCCCCCCC
Q 031755 113 RLIYVDIAKPGKDRFG 128 (153)
Q Consensus 113 ~~l~v~~~~~~~~~~~ 128 (153)
.+|+|+++++..++.+
T Consensus 108 stLhiElAKSNtK~kr 123 (284)
T KOG1457|consen 108 STLHIELAKSNTKRKR 123 (284)
T ss_pred ceeEeeehhcCccccc
Confidence 7899999987655443
No 75
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.81 E-value=3.3e-08 Score=73.62 Aligned_cols=85 Identities=28% Similarity=0.457 Sum_probs=75.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.+...++|+|.|||..+.+++|+++|..||.+..+.+..++ +|.+.|.|-|.|...++|.++++.+++..++|..+.+.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 34445899999999999999999999999988888877775 69999999999999999999999999999999999998
Q ss_pred EeCCCC
Q 031755 119 IAKPGK 124 (153)
Q Consensus 119 ~~~~~~ 124 (153)
...+..
T Consensus 158 ~i~~~~ 163 (243)
T KOG0533|consen 158 IISSPS 163 (243)
T ss_pred EecCcc
Confidence 876543
No 76
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.79 E-value=1.5e-08 Score=80.07 Aligned_cols=75 Identities=35% Similarity=0.481 Sum_probs=67.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
....++|+|.|||.+.|+..|++-|..+|.+....|. +.|+.+| -|.|.+++.|+.|+..|+|..++|+.|.|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 3446899999999999999999999999999999884 3477776 8999999999999999999999999999976
No 77
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.78 E-value=1.2e-07 Score=77.29 Aligned_cols=86 Identities=27% Similarity=0.449 Sum_probs=77.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
....+.++||.+|...+...+|+.+|++||+|+-..++++.-+-..+.|+||++.+.+.|.++|..|+...+.|+-|.|+
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 55667899999999999999999999999999999999886666678899999999999999999999999999999998
Q ss_pred EeCCCC
Q 031755 119 IAKPGK 124 (153)
Q Consensus 119 ~~~~~~ 124 (153)
-++...
T Consensus 481 kaKNEp 486 (940)
T KOG4661|consen 481 KAKNEP 486 (940)
T ss_pred ecccCc
Confidence 876533
No 78
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.76 E-value=4.8e-08 Score=72.63 Aligned_cols=84 Identities=21% Similarity=0.376 Sum_probs=77.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....+.+||+|+....+.++++..|+.||.+..+.++.+..++.++||+||+|.+.+.++.++. |++..|.|+.+.+.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 55567899999999999999999999999999999999999888999999999999999999999 99999999999998
Q ss_pred EeCCC
Q 031755 119 IAKPG 123 (153)
Q Consensus 119 ~~~~~ 123 (153)
+.+..
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87643
No 79
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.74 E-value=1.7e-07 Score=60.56 Aligned_cols=78 Identities=23% Similarity=0.355 Sum_probs=66.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcc--CceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccC----CcEEEE
Q 031755 44 SRIMVRNLPFTTHEHTLQKEFSAF--GEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLD----GRLIYV 117 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~l~~~f~~~--G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~----g~~l~v 117 (153)
|||.|.|||-..+.++|.+++... |..-.+.++.+..++...|||||.|.+++.|.+-...++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 799999999999999999988654 45556788888888999999999999999999999999999765 355666
Q ss_pred EEeC
Q 031755 118 DIAK 121 (153)
Q Consensus 118 ~~~~ 121 (153)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6654
No 80
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.69 E-value=3.3e-08 Score=72.27 Aligned_cols=72 Identities=24% Similarity=0.559 Sum_probs=65.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCC
Q 031755 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPG 123 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 123 (153)
..||||+||..+.+.+++.+|..||++..+.+.. ||+||+|.|...|..|+..+++..+.|..+.++++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4799999999999999999999999999988753 58899999999999999999999999998888888753
No 81
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.66 E-value=2.4e-07 Score=71.33 Aligned_cols=82 Identities=27% Similarity=0.416 Sum_probs=73.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeE--------EEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCcc
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAE--------VKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNL 110 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~--------~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i 110 (153)
.....+.|||.|||.++|.+++.++|+.+|-|.. |.+-++. .|..+|-|++.|--.+++.-|+..|++..+
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccc
Confidence 3555678999999999999999999999997764 6677765 499999999999999999999999999999
Q ss_pred CCcEEEEEEeC
Q 031755 111 DGRLIYVDIAK 121 (153)
Q Consensus 111 ~g~~l~v~~~~ 121 (153)
.|+.|+|+-++
T Consensus 209 rg~~~rVerAk 219 (382)
T KOG1548|consen 209 RGKKLRVERAK 219 (382)
T ss_pred cCcEEEEehhh
Confidence 99999998876
No 82
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.51 E-value=1.6e-07 Score=69.63 Aligned_cols=86 Identities=24% Similarity=0.364 Sum_probs=76.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
-.....+||+|.|.-+++++.|-..|.+|-.-....++++.-||+++||+||.|.+..++..|+..|+|..++.+.|.+.
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 34456799999999999999999999999877778888888899999999999999999999999999999999998877
Q ss_pred EeCCCC
Q 031755 119 IAKPGK 124 (153)
Q Consensus 119 ~~~~~~ 124 (153)
-+..+.
T Consensus 266 kS~wke 271 (290)
T KOG0226|consen 266 KSEWKE 271 (290)
T ss_pred hhhHHh
Confidence 666544
No 83
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=1.7e-07 Score=75.87 Aligned_cols=73 Identities=27% Similarity=0.493 Sum_probs=65.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIY 116 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 116 (153)
......+|+|-|||..+++++|..+|+.||+|..++. +...+|.+||+|-|...|++|+++|++..|.|+++.
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3445679999999999999999999999999999664 455679999999999999999999999999998877
No 84
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.47 E-value=3.6e-07 Score=75.98 Aligned_cols=83 Identities=22% Similarity=0.333 Sum_probs=73.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecC---CCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDE---ITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIY 116 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~---~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 116 (153)
.+..+++||+||++.++++.|...|+.||.|..+.|+..+ +....+.++||.|-+..+|++|+..|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 6677899999999999999999999999999998887643 2344567999999999999999999999999999999
Q ss_pred EEEeCC
Q 031755 117 VDIAKP 122 (153)
Q Consensus 117 v~~~~~ 122 (153)
+.|.++
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999753
No 85
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.45 E-value=7.9e-08 Score=69.86 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=71.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
.++..+|||+||...++++.|.++|-+-|.|..+.|+.+++ ++.+ ||||.|++..+..-|+..+||..+.+..+.+.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 34567999999999999999999999999999999998874 6777 999999999999999999999999998888776
Q ss_pred eC
Q 031755 120 AK 121 (153)
Q Consensus 120 ~~ 121 (153)
..
T Consensus 84 r~ 85 (267)
T KOG4454|consen 84 RC 85 (267)
T ss_pred cc
Confidence 54
No 86
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.38 E-value=4.6e-07 Score=73.58 Aligned_cols=87 Identities=26% Similarity=0.412 Sum_probs=80.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
.....+.++|++||..+++.++.+++..||.+....++.+..+|.++||||.+|.+......|+..|+|..+++..|.|+
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 44456799999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EeCCCCC
Q 031755 119 IAKPGKD 125 (153)
Q Consensus 119 ~~~~~~~ 125 (153)
.+.....
T Consensus 365 ~A~~g~~ 371 (500)
T KOG0120|consen 365 RAIVGAS 371 (500)
T ss_pred hhhccch
Confidence 8876554
No 87
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=4.7e-06 Score=67.97 Aligned_cols=106 Identities=25% Similarity=0.408 Sum_probs=81.1
Q ss_pred CCCCCceEEEcCCCCCCCH------HHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCC
Q 031755 39 NYPLASRIMVRNLPFTTHE------HTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDG 112 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~------~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g 112 (153)
.+...+.|+|.|+|.--.. ..|.++|+++|+++.+.++.+.+ |.++||.|++|.+..+|+.|++.|+|..++-
T Consensus 54 ~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 54 AEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred cCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 4466789999999965432 35677899999999999998876 5599999999999999999999999999864
Q ss_pred -cEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCccc
Q 031755 113 -RLIYVDIAKPGKDRFGGYPRTSGPPKQQPLSEQD 146 (153)
Q Consensus 113 -~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (153)
|+..+..-+ +-++....+..+.+|-.+.+.+..
T Consensus 133 nHtf~v~~f~-d~eky~s~~dew~~pe~q~fk~~~ 166 (698)
T KOG2314|consen 133 NHTFFVRLFK-DFEKYESISDEWREPEKQTFKDSS 166 (698)
T ss_pred cceEEeehhh-hHHHhcCCccccCCcccccccchH
Confidence 666665543 344555566667777766655544
No 88
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.24 E-value=1e-06 Score=68.07 Aligned_cols=84 Identities=25% Similarity=0.282 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeE--------EEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCC
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAE--------VKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDG 112 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~--------~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g 112 (153)
....+|||-+||..+++++|..+|.++|.|.. |.+-++++|+..++-|.|.|.|...|++|+..+++..+.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 34569999999999999999999999997763 6788888999999999999999999999999999999999
Q ss_pred cEEEEEEeCCCC
Q 031755 113 RLIYVDIAKPGK 124 (153)
Q Consensus 113 ~~l~v~~~~~~~ 124 (153)
..|.|.++..+.
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999998887555
No 89
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.20 E-value=4.9e-06 Score=70.94 Aligned_cols=115 Identities=27% Similarity=0.325 Sum_probs=93.0
Q ss_pred hhhccccCCC-cccccccccCCCCCccccccccccC--CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCC
Q 031755 4 AAAATVSYPQ-PMFANSLTNRENPCFRTFNLRASLS--NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEI 80 (153)
Q Consensus 4 ~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~ 80 (153)
++++||.|-. +|..+++.............+.... .....+.+++++|..+.....+...|..||.|..|.+-..
T Consensus 413 sa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-- 490 (975)
T KOG0112|consen 413 SAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-- 490 (975)
T ss_pred cchhhhhhhccccCcccchhhcCCccccCcccccccccccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC--
Confidence 5678888877 7777777666555554444444444 7778899999999999999999999999999999888543
Q ss_pred CCCceeEEEEEecCHHHHHHHHHHcCCCccCC--cEEEEEEeCCCC
Q 031755 81 TKKSKGYAFIQYTSQDDALLALESMDHKNLDG--RLIYVDIAKPGK 124 (153)
Q Consensus 81 ~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g--~~l~v~~~~~~~ 124 (153)
..|+|+.|++...++.|+..|.|..++| +.++|.++.+..
T Consensus 491 ----q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 491 ----QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred ----CcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCC
Confidence 4599999999999999999999999987 678888876543
No 90
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.17 E-value=1.2e-05 Score=64.52 Aligned_cols=80 Identities=25% Similarity=0.427 Sum_probs=66.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
...-|.+.+||+..|+++|.+||+.++ |..+.+.+ .+|+..|-|||+|.+.+++++|++ .+...+..+-|.|-.+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 345788999999999999999999986 67765555 469999999999999999999999 57777888888887776
Q ss_pred CCCC
Q 031755 122 PGKD 125 (153)
Q Consensus 122 ~~~~ 125 (153)
....
T Consensus 85 ~~e~ 88 (510)
T KOG4211|consen 85 GAEA 88 (510)
T ss_pred Cccc
Confidence 5443
No 91
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.12 E-value=1.6e-05 Score=62.70 Aligned_cols=74 Identities=27% Similarity=0.427 Sum_probs=66.9
Q ss_pred CceEEEcCCCC-CCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 43 ASRIMVRNLPF-TTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 43 ~~~v~v~nlp~-~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
...|.|.||.. .+|.+.|..+|+.||+|.+|.|..++. --|+|+|.|...|+-|+..|+|..+-|+.|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57888888855 599999999999999999999998752 579999999999999999999999999999999976
No 92
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.07 E-value=1.2e-05 Score=52.86 Aligned_cols=70 Identities=21% Similarity=0.444 Sum_probs=43.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCC-----ccCCcEEEEE
Q 031755 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHK-----NLDGRLIYVD 118 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~-----~i~g~~l~v~ 118 (153)
+.|+|.+++..++.++|+..|..||.|..|.+.... ..|||.|.+.+.|+.++..+... .+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 578899999999999999999999999999986643 37999999999999999877544 4555555544
Q ss_pred E
Q 031755 119 I 119 (153)
Q Consensus 119 ~ 119 (153)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 3
No 93
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.01 E-value=3.5e-06 Score=62.61 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=61.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCC------------CCceeEEEEEecCHHHHHHHHHHcCCCccC
Q 031755 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEIT------------KKSKGYAFIQYTSQDDALLALESMDHKNLD 111 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~------------g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~ 111 (153)
-.||+++||+...-.-|+++|..||+|-.|.+.....+ +..-.-|+|+|.+...|..+...||+.+|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 48999999999999999999999999999988765443 122356889999999999999999999999
Q ss_pred CcE
Q 031755 112 GRL 114 (153)
Q Consensus 112 g~~ 114 (153)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 974
No 94
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.00 E-value=9.6e-06 Score=62.23 Aligned_cols=85 Identities=27% Similarity=0.539 Sum_probs=75.9
Q ss_pred CceEE-EcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 43 ASRIM-VRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 43 ~~~v~-v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
..+++ +++++..++.++|+..|..+|.|..++++.++.++.+.|++|+.|.....+..++.. +...+.++++.+....
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 34555 999999999999999999999999999999999999999999999999999999986 7888999999999988
Q ss_pred CCCCCCC
Q 031755 122 PGKDRFG 128 (153)
Q Consensus 122 ~~~~~~~ 128 (153)
+...+.+
T Consensus 263 ~~~~~~~ 269 (285)
T KOG4210|consen 263 PRPKSDG 269 (285)
T ss_pred CCccccc
Confidence 7665543
No 95
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.95 E-value=4e-06 Score=67.99 Aligned_cols=86 Identities=21% Similarity=0.401 Sum_probs=76.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
++-...+||+--|...++..+|.++|..+|+|..++++.++.++.++|.+||+|.|.++...||. |.|..+.|..|.|+
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEec
Confidence 33445789998999899999999999999999999999999999999999999999999999996 99999999999998
Q ss_pred EeCCCCC
Q 031755 119 IAKPGKD 125 (153)
Q Consensus 119 ~~~~~~~ 125 (153)
.....+.
T Consensus 254 ~sEaekn 260 (549)
T KOG0147|consen 254 LSEAEKN 260 (549)
T ss_pred ccHHHHH
Confidence 8765443
No 96
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.92 E-value=6.5e-05 Score=46.92 Aligned_cols=68 Identities=25% Similarity=0.342 Sum_probs=46.0
Q ss_pred ceEEEcCCCCCCCHHHHHH----HhhccC-ceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 44 SRIMVRNLPFTTHEHTLQK----EFSAFG-EVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~l~~----~f~~~G-~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
+.|+|.|||.+..-..|+. +...+| ++..+. .+.|++.|.+.+.|++|.+.|+|-.+-|.+|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4789999999988776554 444554 555542 2579999999999999999999999999999999
Q ss_pred EeC
Q 031755 119 IAK 121 (153)
Q Consensus 119 ~~~ 121 (153)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 974
No 97
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.91 E-value=3.5e-05 Score=59.61 Aligned_cols=78 Identities=19% Similarity=0.428 Sum_probs=61.2
Q ss_pred ceEEEcCCCCCCCHHH----H--HHHhhccCceeEEEEEecCCC-CCceeE--EEEEecCHHHHHHHHHHcCCCccCCcE
Q 031755 44 SRIMVRNLPFTTHEHT----L--QKEFSAFGEVAEVKLVKDEIT-KKSKGY--AFIQYTSQDDALLALESMDHKNLDGRL 114 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~----l--~~~f~~~G~i~~~~i~~~~~~-g~~~g~--~fv~f~~~~~a~~a~~~l~~~~i~g~~ 114 (153)
.-|||-+|++.+..++ | .++|.+||+|..|.+-+-..+ ....++ .||+|.+.++|..+|...+|..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 5789999999877765 2 578999999999887653211 112233 499999999999999999999999999
Q ss_pred EEEEEeC
Q 031755 115 IYVDIAK 121 (153)
Q Consensus 115 l~v~~~~ 121 (153)
|+..+-.
T Consensus 195 lkatYGT 201 (480)
T COG5175 195 LKATYGT 201 (480)
T ss_pred EeeecCc
Confidence 9987643
No 98
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.87 E-value=6.9e-05 Score=62.76 Aligned_cols=81 Identities=16% Similarity=0.318 Sum_probs=69.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeE-EEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEE
Q 031755 38 SNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAE-VKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIY 116 (153)
Q Consensus 38 ~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~-~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 116 (153)
...+..+.|-+.|+|.+++-+||.+||..|-.+-. |.+..+ +.|..+|-|-|.|++.++|.+|...|++..|.++++.
T Consensus 862 ~~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~ 940 (944)
T KOG4307|consen 862 IKSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVS 940 (944)
T ss_pred cCCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEE
Confidence 35555668999999999999999999999975554 444444 5699999999999999999999999999999999988
Q ss_pred EEE
Q 031755 117 VDI 119 (153)
Q Consensus 117 v~~ 119 (153)
+.+
T Consensus 941 l~i 943 (944)
T KOG4307|consen 941 LRI 943 (944)
T ss_pred EEe
Confidence 764
No 99
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.84 E-value=9.4e-05 Score=54.12 Aligned_cols=77 Identities=21% Similarity=0.394 Sum_probs=66.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccC-CcEEEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLD-GRLIYVD 118 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~-g~~l~v~ 118 (153)
.++...+++.|||..++.+.+..+|.+|.-...++++... .+.+||+|.+...|..|...+++..|. .+.+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 5667799999999999999999999999988888887653 479999999999999999999999886 7778777
Q ss_pred EeC
Q 031755 119 IAK 121 (153)
Q Consensus 119 ~~~ 121 (153)
++.
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 653
No 100
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.79 E-value=3.9e-05 Score=60.83 Aligned_cols=89 Identities=19% Similarity=0.265 Sum_probs=70.8
Q ss_pred cccCCCCCccccccccccCCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEec---CCCCC----------cee
Q 031755 20 LTNRENPCFRTFNLRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKD---EITKK----------SKG 86 (153)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~---~~~g~----------~~g 86 (153)
+.....++++..+......++..+++|.+-|||.+-.-+.|.++|..+|.|..|+|+.- +.+.. .+-
T Consensus 208 vseDgkKVrRisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~ 287 (484)
T KOG1855|consen 208 VSEDGKKVRRISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKE 287 (484)
T ss_pred EccCCceeeecCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhh
Confidence 33445566777777766667788999999999999888899999999999999999875 32221 156
Q ss_pred EEEEEecCHHHHHHHHHHcCCC
Q 031755 87 YAFIQYTSQDDALLALESMDHK 108 (153)
Q Consensus 87 ~~fv~f~~~~~a~~a~~~l~~~ 108 (153)
+|+|+|...+.|.+|.+.|+..
T Consensus 288 ~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 288 CALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred hhhhhhhhhHHHHHHHHhhchh
Confidence 7999999999999999977554
No 101
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.78 E-value=0.00012 Score=58.92 Aligned_cols=77 Identities=29% Similarity=0.431 Sum_probs=59.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeE-EEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAE-VKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~-~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
.....|.+++||..+++++|.+||+..--+.. +.++.++ .+.+.|-|||+|++.+.|++|+.. +...|+-+-|.|--
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeeh
Confidence 45679999999999999999999987642223 4455554 477999999999999999999984 55567666666633
No 102
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.75 E-value=3.7e-05 Score=59.68 Aligned_cols=79 Identities=24% Similarity=0.327 Sum_probs=66.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccC--ceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFG--EVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIY 116 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G--~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 116 (153)
.+....-+|||||-+.+++++|.+.+.+-| .+..+.+..++-+|.++|||++...+....++.++.|....|.|..-.
T Consensus 76 ~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~ 155 (498)
T KOG4849|consen 76 SEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPT 155 (498)
T ss_pred ccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCe
Confidence 444456789999999999999999998776 555677777788899999999999999999999999999999886544
Q ss_pred E
Q 031755 117 V 117 (153)
Q Consensus 117 v 117 (153)
|
T Consensus 156 V 156 (498)
T KOG4849|consen 156 V 156 (498)
T ss_pred e
Confidence 4
No 103
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.69 E-value=8.6e-05 Score=54.50 Aligned_cols=74 Identities=35% Similarity=0.546 Sum_probs=62.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
....+.+.+.+++..+.+.+|.+.|..+|.+..... ..+++||+|+..+++..|+..+++..+.|+.|.+..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 334578999999999999999999999998844333 356999999999999999999999999999999954
Q ss_pred eC
Q 031755 120 AK 121 (153)
Q Consensus 120 ~~ 121 (153)
..
T Consensus 168 ~~ 169 (216)
T KOG0106|consen 168 NS 169 (216)
T ss_pred cC
Confidence 43
No 104
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.68 E-value=0.00024 Score=48.94 Aligned_cols=56 Identities=29% Similarity=0.584 Sum_probs=45.7
Q ss_pred HHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCC
Q 031755 59 TLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPG 123 (153)
Q Consensus 59 ~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 123 (153)
+|.+.|..||++.-+++..+ -.+|+|.+.++|.+|+. ++|.+++|+.|.|++..+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 66777889999998888754 48999999999999998 8999999999999998753
No 105
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.67 E-value=5.6e-05 Score=55.44 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=52.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccC
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLD 111 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~ 111 (153)
...++||.||.+.+++++|+.+|+.|.-...++|.. ......+|++|++.+.|..|+..|+|..|.
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~----~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA----RGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec----CCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 356999999999999999999999886433333321 223458999999999999999999998664
No 106
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.66 E-value=0.00018 Score=56.96 Aligned_cols=79 Identities=22% Similarity=0.328 Sum_probs=64.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCC-cEEEEE
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDG-RLIYVD 118 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g-~~l~v~ 118 (153)
.+++.++++.|+|+++++++++..|.+-|-.++.... -++.+.++++++++.++|..|+-.+++..+++ +.++|.
T Consensus 411 ~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvS 486 (492)
T KOG1190|consen 411 FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVS 486 (492)
T ss_pred CCchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEE
Confidence 4677899999999999999999999988755443221 23445699999999999999999999998876 489999
Q ss_pred EeCC
Q 031755 119 IAKP 122 (153)
Q Consensus 119 ~~~~ 122 (153)
++++
T Consensus 487 FSks 490 (492)
T KOG1190|consen 487 FSKS 490 (492)
T ss_pred eecc
Confidence 9875
No 107
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.56 E-value=0.0003 Score=40.35 Aligned_cols=52 Identities=29% Similarity=0.554 Sum_probs=42.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHH
Q 031755 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLAL 102 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~ 102 (153)
+.|-|.+.+++..+. +...|.+||+|..+.+. ......|+.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 578899999887755 55578899999998885 22458999999999999885
No 108
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.38 E-value=0.0001 Score=62.75 Aligned_cols=79 Identities=24% Similarity=0.325 Sum_probs=71.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCC
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKP 122 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 122 (153)
...|+|.|.|+..|.++++.++..+|.+....++.++ .|+++|-+++.|.+...+.++....+...+....+.++.+.|
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 5689999999999999999999999999999988886 599999999999999999999988888877777788888665
No 109
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.30 E-value=0.001 Score=54.49 Aligned_cols=64 Identities=17% Similarity=0.368 Sum_probs=52.6
Q ss_pred HHHHHhhccCceeEEEEEecCCC---CCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCC
Q 031755 59 TLQKEFSAFGEVAEVKLVKDEIT---KKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKP 122 (153)
Q Consensus 59 ~l~~~f~~~G~i~~~~i~~~~~~---g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 122 (153)
+++.-+..||.|..|.+++.-.. .-..|-.||+|.+.+.+++|..+|+|..+.|+++...|...
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 44445679999999999887222 23468899999999999999999999999999998888653
No 110
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.29 E-value=0.0022 Score=50.53 Aligned_cols=78 Identities=22% Similarity=0.262 Sum_probs=68.1
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEE
Q 031755 39 NYPLASRIMVRNLPFT-THEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYV 117 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~-~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 117 (153)
....++.+.|-+|... +.-+-|..+|..||.|..|.+++.+ .|-|.|++.|....++++..|++..+-|.+|.|
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 4456789999999876 5667789999999999999998765 478999999999999999999999999999999
Q ss_pred EEeC
Q 031755 118 DIAK 121 (153)
Q Consensus 118 ~~~~ 121 (153)
..++
T Consensus 358 ~~Sk 361 (494)
T KOG1456|consen 358 CVSK 361 (494)
T ss_pred eecc
Confidence 8865
No 111
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.18 E-value=0.0043 Score=48.90 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=63.7
Q ss_pred CCCCCceEEEcCCC--CCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccC-C-cE
Q 031755 39 NYPLASRIMVRNLP--FTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLD-G-RL 114 (153)
Q Consensus 39 ~~~~~~~v~v~nlp--~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~-g-~~ 114 (153)
...+.+.|.+.=|. .-++-+.|..+....|++..|-|.+- +|. -|.|+|++.+.|++|-..|||..|. | ++
T Consensus 116 s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCT 190 (494)
T KOG1456|consen 116 SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCT 190 (494)
T ss_pred CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhccccccccccee
Confidence 44445566655444 34788899999999999999988764 333 4899999999999999999999774 4 68
Q ss_pred EEEEEeCCCC
Q 031755 115 IYVDIAKPGK 124 (153)
Q Consensus 115 l~v~~~~~~~ 124 (153)
|+|++++|.+
T Consensus 191 LKIeyAkP~r 200 (494)
T KOG1456|consen 191 LKIEYAKPTR 200 (494)
T ss_pred EEEEecCcce
Confidence 9999998755
No 112
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.15 E-value=0.002 Score=50.10 Aligned_cols=80 Identities=19% Similarity=0.373 Sum_probs=62.5
Q ss_pred CCCCCceEEEcCCCC----CCC-------HHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCC
Q 031755 39 NYPLASRIMVRNLPF----TTH-------EHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDH 107 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~----~~~-------~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~ 107 (153)
.....++|.+.|+-. ..+ +++|.+-..+||.+.++.+.- ..+.|.+.|.|.+.+.|..+|..|+|
T Consensus 261 k~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 261 KARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred cccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcC
Confidence 344457899998842 122 245566678999999988753 34578999999999999999999999
Q ss_pred CccCCcEEEEEEeCC
Q 031755 108 KNLDGRLIYVDIAKP 122 (153)
Q Consensus 108 ~~i~g~~l~v~~~~~ 122 (153)
.-++|+.|...+...
T Consensus 337 R~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 337 RWFDGRQLTASIWDG 351 (382)
T ss_pred eeecceEEEEEEeCC
Confidence 999999999887654
No 113
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.13 E-value=0.01 Score=42.66 Aligned_cols=72 Identities=21% Similarity=0.456 Sum_probs=61.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCcc--CCcEEEEEEeC
Q 031755 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNL--DGRLIYVDIAK 121 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i--~g~~l~v~~~~ 121 (153)
.+|.|.+||+..++.+|++-+.+-|+++...+.++ |.+.|+|...+..+-|++.|+...+ .|.+..|....
T Consensus 116 ~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~ 188 (241)
T KOG0105|consen 116 YRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRG 188 (241)
T ss_pred eeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEecc
Confidence 58999999999999999999999999999998776 4899999999999999999987754 45565555544
Q ss_pred C
Q 031755 122 P 122 (153)
Q Consensus 122 ~ 122 (153)
.
T Consensus 189 ~ 189 (241)
T KOG0105|consen 189 D 189 (241)
T ss_pred c
Confidence 3
No 114
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.0019 Score=52.61 Aligned_cols=66 Identities=21% Similarity=0.255 Sum_probs=60.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhh-ccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHH
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFS-AFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~ 104 (153)
...+.+|||||+||.-++.++|..+|. -||-|+.+-|-++++-+.++|-+=|+|.+..+-.+||..
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 445567999999999999999999998 999999999999988899999999999999999999873
No 115
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.05 E-value=0.00042 Score=55.25 Aligned_cols=89 Identities=24% Similarity=0.326 Sum_probs=69.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCC-ccCCcEEEEEEeCC
Q 031755 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHK-NLDGRLIYVDIAKP 122 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~-~i~g~~l~v~~~~~ 122 (153)
+.+|+|||.+..+-.+|+.+|...--...-.++ ...||+||.+.+...|.++++.++|. .+.|.++.+..+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 478999999999999999999754111111111 12479999999999999999999998 68899999999999
Q ss_pred CCCCCCCCCCCCCCCC
Q 031755 123 GKDRFGGYPRTSGPPK 138 (153)
Q Consensus 123 ~~~~~~~~~~~~~~~~ 138 (153)
+..+.+....+..||.
T Consensus 76 kkqrsrk~Qirnippq 91 (584)
T KOG2193|consen 76 KKQRSRKIQIRNIPPQ 91 (584)
T ss_pred HHHHhhhhhHhcCCHH
Confidence 8888877666655554
No 116
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.03 E-value=0.0038 Score=40.54 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=49.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCceeEEE-EEec-------CCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcE
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVK-LVKD-------EITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRL 114 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~-i~~~-------~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~ 114 (153)
.+.|.|-++|+..+ ..+...|++||.|.+.. +.++ + .-....+..++|.++.+|++||. -||..++|..
T Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~-~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYP-IPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp CCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG-----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CeEEEEEccCHHHH-HHHHHHHHhcceEEEeeccccccccccccc-CCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 45788889998854 56788899999998764 1000 0 01224589999999999999999 6999998864
Q ss_pred E-EEEEe
Q 031755 115 I-YVDIA 120 (153)
Q Consensus 115 l-~v~~~ 120 (153)
+ -|.++
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 3 45554
No 117
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.02 E-value=0.00075 Score=55.80 Aligned_cols=77 Identities=17% Similarity=0.234 Sum_probs=62.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhh-ccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCcc---CCcE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFS-AFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNL---DGRL 114 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i---~g~~ 114 (153)
....++.|||.||-.-+|.-+|+.++. ..|.|...+|- +-+.+|||.|.+.+.|.+...+|+|... +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD------kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD------KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHH------HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 566778999999999999999999998 55566666442 2357999999999999999999999954 5577
Q ss_pred EEEEEeC
Q 031755 115 IYVDIAK 121 (153)
Q Consensus 115 l~v~~~~ 121 (153)
|.+.|..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 8877754
No 118
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.0068 Score=49.46 Aligned_cols=80 Identities=20% Similarity=0.411 Sum_probs=55.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCC-C--CCcee---EEEEEecCHHHHHHHHHHcCCCccCC
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEI-T--KKSKG---YAFIQYTSQDDALLALESMDHKNLDG 112 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-~--g~~~g---~~fv~f~~~~~a~~a~~~l~~~~i~g 112 (153)
....++.||||+||++++++.|...|..||.+. +..+.... . --++| |+|+.|++..+++..+..... +.
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~ 330 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GE 330 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cc
Confidence 445568999999999999999999999999643 34432111 1 12356 999999999988877765332 44
Q ss_pred cEEEEEEeCC
Q 031755 113 RLIYVDIAKP 122 (153)
Q Consensus 113 ~~l~v~~~~~ 122 (153)
..+.++.+.+
T Consensus 331 ~~~yf~vss~ 340 (520)
T KOG0129|consen 331 GNYYFKVSSP 340 (520)
T ss_pred cceEEEEecC
Confidence 4455555444
No 119
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.96 E-value=0.006 Score=38.14 Aligned_cols=58 Identities=19% Similarity=0.379 Sum_probs=43.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCC
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDH 107 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~ 107 (153)
...+..||+ +|..+...||.++|+.||.| .|..+.+. .|||.....+.|..++..+..
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 345677887 99999999999999999965 44444442 799999999999999887764
No 120
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.73 E-value=0.0021 Score=50.80 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=62.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCceeE---EEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEE
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAE---VKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 119 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~---~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~ 119 (153)
..-|.+++||...+.++|.+||..|..-.. +.++.+. .|.+.|-|||+|.+.+.|..|...-++..+.++-|.|-.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 347889999999999999999998874433 5566554 589999999999999999999887777767678777755
Q ss_pred eC
Q 031755 120 AK 121 (153)
Q Consensus 120 ~~ 121 (153)
+.
T Consensus 359 ~S 360 (508)
T KOG1365|consen 359 CS 360 (508)
T ss_pred cc
Confidence 54
No 121
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.63 E-value=0.023 Score=33.56 Aligned_cols=56 Identities=13% Similarity=0.264 Sum_probs=44.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcc---CceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHc
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAF---GEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~---G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l 105 (153)
....|+|.++. .++.++|+.+|..| .....+..+-+. .|=|.|.+.+.|.+|+..|
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 45689999996 46667899999988 235677777664 6889999999999999754
No 122
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.38 E-value=0.017 Score=45.78 Aligned_cols=68 Identities=25% Similarity=0.435 Sum_probs=53.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcc----CceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCc
Q 031755 44 SRIMVRNLPFTTHEHTLQKEFSAF----GEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGR 113 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~l~~~f~~~----G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~ 113 (153)
-.|.+++||.+.++.++.+||.+. |-...+.+++.+ +|+..|-||+.|...+.|+.|+.. +...|+-+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqR 233 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQR 233 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHH
Confidence 367788999999999999999733 234567777765 599999999999999999999984 33334433
No 123
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.35 E-value=0.032 Score=38.48 Aligned_cols=74 Identities=20% Similarity=0.294 Sum_probs=54.4
Q ss_pred CCCCCceEEEcCCCCCC----CHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcE
Q 031755 39 NYPLASRIMVRNLPFTT----HEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRL 114 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~----~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~ 114 (153)
.+++..+|.|+=|...+ +...+...++.||.|.++... .+..|.|.|+|..+|-+|+.+++. ...|.-
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 46666788887555443 334455567899999998763 345799999999999999998776 566777
Q ss_pred EEEEEe
Q 031755 115 IYVDIA 120 (153)
Q Consensus 115 l~v~~~ 120 (153)
+++.|.
T Consensus 154 ~qCsWq 159 (166)
T PF15023_consen 154 FQCSWQ 159 (166)
T ss_pred EEeecc
Confidence 777764
No 124
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.26 E-value=0.0026 Score=47.58 Aligned_cols=62 Identities=23% Similarity=0.494 Sum_probs=49.7
Q ss_pred HHHHHhh-ccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 59 TLQKEFS-AFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 59 ~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
++...|. +||+|..+.+..+. .-.-.|=+||.|...++|++|+..||+.-+.|++|...+..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3333444 99999998666543 23457889999999999999999999999999999988764
No 125
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.06 E-value=0.03 Score=42.93 Aligned_cols=64 Identities=14% Similarity=0.308 Sum_probs=51.2
Q ss_pred HHHHHHhhccCceeEEEEEecCCC-CCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 58 HTLQKEFSAFGEVAEVKLVKDEIT-KKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 58 ~~l~~~f~~~G~i~~~~i~~~~~~-g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
+++++.+.+||++..|.|...+.. -...---||+|+..++|.+|+-.|||..++|+.+...+..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 356777889999999887765421 1223458999999999999999999999999999887754
No 126
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.02 E-value=0.00035 Score=59.66 Aligned_cols=68 Identities=25% Similarity=0.354 Sum_probs=58.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccC
Q 031755 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLD 111 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~ 111 (153)
.++|+.||+....+.+|...|..+|.+..+++..+...+..+|.||+.|.+.+.+.+++...++..++
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 57899999999999999999999998888887766667899999999999999999999865554444
No 127
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.91 E-value=0.0035 Score=54.17 Aligned_cols=83 Identities=19% Similarity=0.297 Sum_probs=69.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVD 118 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~ 118 (153)
....+.+||+|||+..+++.+|+..|..+|++..|.|.+-.. +..--++|+.|.+.+.+..+...+.+..|..-.+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 445567999999999999999999999999999999877643 3334589999999999999999999998876667776
Q ss_pred EeCC
Q 031755 119 IAKP 122 (153)
Q Consensus 119 ~~~~ 122 (153)
+..+
T Consensus 447 lG~~ 450 (975)
T KOG0112|consen 447 LGQP 450 (975)
T ss_pred cccc
Confidence 6643
No 128
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.69 E-value=0.019 Score=41.12 Aligned_cols=82 Identities=15% Similarity=0.175 Sum_probs=50.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhc-cCcee---EEEEEec--CCCCCceeEEEEEecCHHHHHHHHHHcCCCccCC--
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSA-FGEVA---EVKLVKD--EITKKSKGYAFIQYTSQDDALLALESMDHKNLDG-- 112 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~-~G~i~---~~~i~~~--~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g-- 112 (153)
...+.|.|++||+.++++++...+.. ++.-. .+.-... .......+.|||.|.+.+.+..-...++|..+-+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34569999999999999999887776 66552 2221111 1112245789999999999999999999975532
Q ss_pred ---cEEEEEEeCC
Q 031755 113 ---RLIYVDIAKP 122 (153)
Q Consensus 113 ---~~l~v~~~~~ 122 (153)
....|+++.-
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 2455666654
No 129
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.69 E-value=0.021 Score=45.41 Aligned_cols=76 Identities=14% Similarity=0.244 Sum_probs=60.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCC---CCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 45 RIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEIT---KKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 45 ~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~---g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
.|.|.||.+.++.++++.+|...|+|..+.+...... ......|||-|.|...+..|-. |.++.+-++.|.|-...
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 8999999999999999999999999999987764322 2345789999999988777765 77777777766665543
No 130
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.38 E-value=0.0078 Score=46.68 Aligned_cols=79 Identities=19% Similarity=0.359 Sum_probs=60.9
Q ss_pred ceEEEcCCCCCCCHHHHH---HHhhccCceeEEEEEecC----CCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEE
Q 031755 44 SRIMVRNLPFTTHEHTLQ---KEFSAFGEVAEVKLVKDE----ITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIY 116 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~l~---~~f~~~G~i~~~~i~~~~----~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 116 (153)
+-+||-+|+.....+.+. +.|.+||.|.++.+-.+. ..+.. ..+||+|...++|..+|...+|...+|+.++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 577888898877666553 468899999998887754 12223 3499999999999999999999999998877
Q ss_pred EEEeCCC
Q 031755 117 VDIAKPG 123 (153)
Q Consensus 117 v~~~~~~ 123 (153)
..+..++
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 6665543
No 131
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.00 E-value=0.21 Score=30.39 Aligned_cols=59 Identities=14% Similarity=0.313 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHhhccC-----ceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEe
Q 031755 53 FTTHEHTLQKEFSAFG-----EVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120 (153)
Q Consensus 53 ~~~~~~~l~~~f~~~G-----~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 120 (153)
..++..+|..++...+ .|-.+.+... |+||+... +.|+.++..|++..+.|+++.|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3467778888887664 4445666543 89999886 4789999999999999999999864
No 132
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.96 E-value=0.088 Score=37.99 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=46.1
Q ss_pred HHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcC--CCccCCcEEEEEEeCC
Q 031755 57 EHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMD--HKNLDGRLIYVDIAKP 122 (153)
Q Consensus 57 ~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~--~~~i~g~~l~v~~~~~ 122 (153)
...|+++|..++.+..+..++.. +-..|.|.+.+.|.++...|+ +..+.|..+++.++..
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred HHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 46789999999999998887653 468899999999999999999 8999999999998853
No 133
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.07 E-value=1.1 Score=29.61 Aligned_cols=68 Identities=15% Similarity=0.262 Sum_probs=48.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccC-ceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCC
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFG-EVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDG 112 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G-~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g 112 (153)
...+.+...|..++.++|..+...+- .|..++|+++. .-.+-.+++.|.+.+.|..-...+||..++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 33444545555566666665555543 45568888763 3356789999999999999999999997764
No 134
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=93.64 E-value=0.11 Score=39.13 Aligned_cols=61 Identities=18% Similarity=0.246 Sum_probs=52.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHc
Q 031755 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESM 105 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l 105 (153)
..|||.||..-++.+.+...|..||.|..-.+..+ +.++..+-++|.|...-.|.+|+...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHh
Confidence 68999999999999999999999999987555444 24888899999999998888888866
No 135
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=93.49 E-value=0.16 Score=43.39 Aligned_cols=82 Identities=20% Similarity=0.169 Sum_probs=63.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeE-EEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAE-VKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYV 117 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~-~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 117 (153)
....+..|||..||..+++.++.++|..--.|+. |.+-..+ ++..++.|||.|...+.+..|...-+...++-+.|+|
T Consensus 430 P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 430 PGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred CCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 4455679999999999999999999987666665 6666555 6888999999999988777777655666677777888
Q ss_pred EEeC
Q 031755 118 DIAK 121 (153)
Q Consensus 118 ~~~~ 121 (153)
....
T Consensus 509 ~si~ 512 (944)
T KOG4307|consen 509 DSIA 512 (944)
T ss_pred echh
Confidence 6543
No 136
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=92.65 E-value=0.006 Score=48.85 Aligned_cols=116 Identities=17% Similarity=0.260 Sum_probs=81.1
Q ss_pred hhhhhccccCCCcccc-cccccCCCC---CccccccccccCCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEe
Q 031755 2 WAAAAATVSYPQPMFA-NSLTNRENP---CFRTFNLRASLSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVK 77 (153)
Q Consensus 2 ~~~~~~~v~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~ 77 (153)
-...++||+.+...-+ ++.+...+. .....+..-+...-..++.+-|.|+|+...++.+..++..||.+..|..+.
T Consensus 35 ~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvn 114 (584)
T KOG2193|consen 35 VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVN 114 (584)
T ss_pred eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhc
Confidence 3456788888875444 333333222 222333333333444567899999999999999999999999999886543
Q ss_pred -cCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 78 -DEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 78 -~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
+.++ -..=++|...+.++.++..++|.++.+..+.+.+-.
T Consensus 115 t~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 115 TDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred cchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 2222 123367888899999999999999999999998754
No 137
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.44 E-value=0.99 Score=36.77 Aligned_cols=72 Identities=18% Similarity=0.340 Sum_probs=59.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccC-ceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCC
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFG-EVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDG 112 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G-~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g 112 (153)
....++.|.|=.+|..++-.||..|+..+- .|..++++++. --.+-..++.|.+.++|..-...+||..++.
T Consensus 70 ~~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 70 NASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred cCCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 333388999999999999999999988775 56789999853 2234578999999999999999999997765
No 138
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.44 E-value=1.9 Score=25.71 Aligned_cols=55 Identities=9% Similarity=0.099 Sum_probs=41.9
Q ss_pred CCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEE
Q 031755 54 TTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYV 117 (153)
Q Consensus 54 ~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 117 (153)
.++-++++..|..|+- .+|..++ ..=||.|.+..+|+++....+|..+.+.++.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~------tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR------TGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC------CEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3567889999999972 3344443 24689999999999999999998877776654
No 139
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.37 E-value=0.15 Score=41.55 Aligned_cols=70 Identities=20% Similarity=0.320 Sum_probs=55.1
Q ss_pred EcCCCCC-CCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCCC
Q 031755 48 VRNLPFT-THEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGK 124 (153)
Q Consensus 48 v~nlp~~-~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~ 124 (153)
+.-.|.. -+.++|..-|.+||+|..|.+-.. --.|.|+|.+..+|-.|.. ..+..|+|+-|+|.|.++..
T Consensus 377 lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 377 LEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 3334433 345678888999999999988443 3479999999999988877 68999999999999998744
No 140
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=90.69 E-value=0.41 Score=40.55 Aligned_cols=74 Identities=16% Similarity=0.269 Sum_probs=62.6
Q ss_pred cCCCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEE
Q 031755 37 LSNYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIY 116 (153)
Q Consensus 37 ~~~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~ 116 (153)
...-++..+|||+|+-..+..+-++.++..+|.|..+.... |+|..|..+.....++..++-..++|..+.
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~ 104 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLI 104 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhh
Confidence 33556677999999999999999999999999887765532 899999999999999999999999988776
Q ss_pred EEE
Q 031755 117 VDI 119 (153)
Q Consensus 117 v~~ 119 (153)
+..
T Consensus 105 ~~~ 107 (668)
T KOG2253|consen 105 ENV 107 (668)
T ss_pred ccc
Confidence 654
No 141
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.55 E-value=1.4 Score=34.15 Aligned_cols=71 Identities=24% Similarity=0.281 Sum_probs=53.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcE-EEEEEeC
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRL-IYVDIAK 121 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~-l~v~~~~ 121 (153)
.+.|-|-++|+.-..- |...|..||.|++.... ..-.+.+|.|.+.-+|++||. .+|..|+|.. |-|..+.
T Consensus 197 D~WVTVfGFppg~~s~-vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVSI-VLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccchhH-HHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 5677788888775544 56679999998876543 223599999999999999999 5999888853 4444443
No 142
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.23 E-value=0.81 Score=38.27 Aligned_cols=68 Identities=19% Similarity=0.346 Sum_probs=51.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhc--cCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCC--ccCCcEEE
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSA--FGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHK--NLDGRLIY 116 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~--~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~--~i~g~~l~ 116 (153)
..+.|+|+-||..+..++++.+|.. +-++..|.+-.+. -=||+|++..+|+.|.+.|... .|-|+.|.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 3478999999999999999999985 4466677765542 3689999999999998876443 45555444
No 143
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.45 E-value=0.34 Score=42.28 Aligned_cols=79 Identities=25% Similarity=0.362 Sum_probs=63.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCc--cCCcEEEEE
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKN--LDGRLIYVD 118 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~--i~g~~l~v~ 118 (153)
+...+.++.|.+...+...|.-++..||.+.+.+.+++- ..+.|+|.+.+.|-.|+.+++|.. ..|-+.+|.
T Consensus 296 plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~ 369 (1007)
T KOG4574|consen 296 PLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVS 369 (1007)
T ss_pred cCcchhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEE
Confidence 334455566666677778899999999999999987764 489999999999999999999995 467788998
Q ss_pred EeCCCCC
Q 031755 119 IAKPGKD 125 (153)
Q Consensus 119 ~~~~~~~ 125 (153)
+++.-+.
T Consensus 370 ~ak~~~~ 376 (1007)
T KOG4574|consen 370 FAKTLPM 376 (1007)
T ss_pred ecccccc
Confidence 8876443
No 144
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=87.34 E-value=0.33 Score=37.44 Aligned_cols=80 Identities=23% Similarity=0.165 Sum_probs=62.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
..+++|++++...+.+.+...++...|................+|++++.|...+.+..++.......+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 36799999999999888888888888877776665555567889999999999999999998544445666555544443
No 145
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.58 E-value=3.7 Score=33.20 Aligned_cols=58 Identities=22% Similarity=0.301 Sum_probs=48.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccC-ceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHH
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFG-EVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G-~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~ 103 (153)
+....+.|=|-++|.....++|...|..|+ ....|.++-+. ++|..|.+...|..|+.
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 555779999999999999999999999987 33456666553 89999999999999988
No 146
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=83.84 E-value=2.3 Score=35.50 Aligned_cols=78 Identities=22% Similarity=0.345 Sum_probs=52.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhc----------------------------cCceeEEEEEecCCCCCceeEEEEEecCH
Q 031755 44 SRIMVRNLPFTTHEHTLQKEFSA----------------------------FGEVAEVKLVKDEITKKSKGYAFIQYTSQ 95 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~l~~~f~~----------------------------~G~i~~~~i~~~~~~g~~~g~~fv~f~~~ 95 (153)
+++.|+|+|..-...++.+++.. .|.=..+.++.+..+....|||||.|-+.
T Consensus 362 tt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp 441 (549)
T KOG4660|consen 362 TTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSP 441 (549)
T ss_pred hhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCH
Confidence 56666666665555555555432 22223456666666677889999999999
Q ss_pred HHHHHHHHHcCCCc---cCC-cEEEEEEeC
Q 031755 96 DDALLALESMDHKN---LDG-RLIYVDIAK 121 (153)
Q Consensus 96 ~~a~~a~~~l~~~~---i~g-~~l~v~~~~ 121 (153)
+.+....++++|.. +++ +.+.+.|++
T Consensus 442 ~ai~~F~kAFnGk~W~~FnS~Kia~itYAr 471 (549)
T KOG4660|consen 442 EAIIRFYKAFNGKKWEKFNSEKIASITYAR 471 (549)
T ss_pred HHHHHHHHHHcCCchhhhcceeeeeeehhh
Confidence 99999999999994 333 345555554
No 147
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=71.97 E-value=13 Score=28.82 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=38.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCce-eEEEEEecCCCCCceeEEEEEecCHH
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEV-AEVKLVKDEITKKSKGYAFIQYTSQD 96 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i-~~~~i~~~~~~g~~~g~~fv~f~~~~ 96 (153)
.-+..+-|+++||+.++.-.+|+..+.+.+.+ .++.+. ...|-||..|.+..
T Consensus 326 ~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 326 EAGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRK 378 (396)
T ss_pred cCccccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCcc
Confidence 44455789999999999999999999877633 344442 23568999997653
No 148
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=71.49 E-value=1.1 Score=33.37 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=57.8
Q ss_pred cCCCCCCceEEEcC----CCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCC
Q 031755 37 LSNYPLASRIMVRN----LPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDG 112 (153)
Q Consensus 37 ~~~~~~~~~v~v~n----lp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g 112 (153)
..+.+...+++.|+ |...++.+.+...|.+-|.+..+++.++.+ |..+.++|+.+--......++....+...--
T Consensus 74 l~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~ 152 (267)
T KOG4454|consen 74 LEEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLELFQ 152 (267)
T ss_pred hccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCcCC
Confidence 33555567888888 888888888888999999999999998875 7788899998876666666666555554333
Q ss_pred cE
Q 031755 113 RL 114 (153)
Q Consensus 113 ~~ 114 (153)
++
T Consensus 153 ~~ 154 (267)
T KOG4454|consen 153 KK 154 (267)
T ss_pred CC
Confidence 33
No 149
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=67.53 E-value=14 Score=22.19 Aligned_cols=60 Identities=13% Similarity=0.205 Sum_probs=41.6
Q ss_pred HHHHHHhhccC-ceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEe
Q 031755 58 HTLQKEFSAFG-EVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIA 120 (153)
Q Consensus 58 ~~l~~~f~~~G-~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~ 120 (153)
++|.+.|...| .+.++..+..+.++.+...-+|+......... .|+-..++|.++.|+-.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 35777788777 66778888877777888888888875432222 34555788888877654
No 150
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=66.38 E-value=5.9 Score=28.53 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=52.8
Q ss_pred CCCceEEEcCCCCCCCH-----HHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCc-E
Q 031755 41 PLASRIMVRNLPFTTHE-----HTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGR-L 114 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~-----~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~-~ 114 (153)
...+.+.+-+++..+-. .....+|.++.+....++++. .+..-|.|.+++.|..|...++...+.|+ .
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~ 81 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNE 81 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCce
Confidence 33455666666554322 233455666666665555443 35677899999999999999999999998 7
Q ss_pred EEEEEeCCCC
Q 031755 115 IYVDIAKPGK 124 (153)
Q Consensus 115 l~v~~~~~~~ 124 (153)
+..-++.+..
T Consensus 82 ~k~yfaQ~~~ 91 (193)
T KOG4019|consen 82 LKLYFAQPGH 91 (193)
T ss_pred EEEEEccCCC
Confidence 7777776543
No 151
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=64.19 E-value=21 Score=21.24 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=41.3
Q ss_pred HHHHHHhhccC-ceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 58 HTLQKEFSAFG-EVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 58 ~~l~~~f~~~G-~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
++|.+.|...| .+..+.-+..+.++.+...-||+......... .++-..+++..+.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCC
Confidence 45677777666 66677777776667788888888875543222 245556888888887654
No 152
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=62.04 E-value=1.1 Score=35.95 Aligned_cols=76 Identities=17% Similarity=0.115 Sum_probs=55.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeC
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 121 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~ 121 (153)
...++++.+|+..+...++.+.|..+|.+....+-. +....+|-++|..-.+...|+. ++|..+.-......+..
T Consensus 150 irRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~k 224 (479)
T KOG4676|consen 150 IRRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIK 224 (479)
T ss_pred HHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcC
Confidence 347899999999999999999999999888765532 3445577799988888888887 57766554444444433
Q ss_pred C
Q 031755 122 P 122 (153)
Q Consensus 122 ~ 122 (153)
|
T Consensus 225 P 225 (479)
T KOG4676|consen 225 P 225 (479)
T ss_pred c
Confidence 3
No 153
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.23 E-value=55 Score=28.00 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=58.5
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHhhcc----CceeEEEEEecCC----------CC-----------------------
Q 031755 41 PLASRIMVRNLPFT-THEHTLQKEFSAF----GEVAEVKLVKDEI----------TK----------------------- 82 (153)
Q Consensus 41 ~~~~~v~v~nlp~~-~~~~~l~~~f~~~----G~i~~~~i~~~~~----------~g----------------------- 82 (153)
..+++|-|-||.+. +...+|..+|.+| |.|.+|.|..... +|
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 34578999999987 7888999998866 5888877653210 11
Q ss_pred --------------CceeEEEEEecCHHHHHHHHHHcCCCccCCc--EEEEEE
Q 031755 83 --------------KSKGYAFIQYTSQDDALLALESMDHKNLDGR--LIYVDI 119 (153)
Q Consensus 83 --------------~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~--~l~v~~ 119 (153)
...-||-|+|.+...|.+.....+|..+... .+-+.+
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1246899999999999999999999987654 444444
No 154
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=60.93 E-value=33 Score=22.78 Aligned_cols=56 Identities=16% Similarity=0.316 Sum_probs=30.4
Q ss_pred eEEEcCCCCC---------CCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEec-CHHHHHHHHH
Q 031755 45 RIMVRNLPFT---------THEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYT-SQDDALLALE 103 (153)
Q Consensus 45 ~v~v~nlp~~---------~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~-~~~~a~~a~~ 103 (153)
++.|-|++.. .+.+.|.+.|..|..+. +..+.+. ....|++.|.|. |-.....|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 4556666443 34468999999998664 5555554 356789999997 5556666665
No 155
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=53.55 E-value=36 Score=20.03 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=16.2
Q ss_pred HHHHHHhhccCceeEEEEEe
Q 031755 58 HTLQKEFSAFGEVAEVKLVK 77 (153)
Q Consensus 58 ~~l~~~f~~~G~i~~~~i~~ 77 (153)
.+|+.+|+..|+|.-+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 57999999999988766543
No 156
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=48.93 E-value=1.8e+02 Score=25.21 Aligned_cols=69 Identities=7% Similarity=0.086 Sum_probs=50.2
Q ss_pred ceEEEc-CCCCCCCHHHHHHHhhccCcee-----EEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEE
Q 031755 44 SRIMVR-NLPFTTHEHTLQKEFSAFGEVA-----EVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYV 117 (153)
Q Consensus 44 ~~v~v~-nlp~~~~~~~l~~~f~~~G~i~-----~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 117 (153)
.+++|. +-...++..+|-.++..-+.|. .|.|.. .|.||+... +.+...+..|++..+.|+.+.|
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELPK-GMPGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcCh-hhHHHHHHHhccccccCCceEE
Confidence 455553 2334577788888887666554 355543 489999875 5588999999999999999999
Q ss_pred EEeC
Q 031755 118 DIAK 121 (153)
Q Consensus 118 ~~~~ 121 (153)
+.+.
T Consensus 558 ~~~~ 561 (629)
T PRK11634 558 QLLG 561 (629)
T ss_pred EECC
Confidence 9875
No 157
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=45.36 E-value=31 Score=24.83 Aligned_cols=53 Identities=25% Similarity=0.353 Sum_probs=38.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEE
Q 031755 39 NYPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQ 91 (153)
Q Consensus 39 ~~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~ 91 (153)
.......+++++++..+....+...|..+|.+....+.............++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVG 273 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccc
Confidence 44455789999999999999999999999999777666554333333344433
No 158
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=44.38 E-value=23 Score=27.41 Aligned_cols=35 Identities=31% Similarity=0.572 Sum_probs=27.4
Q ss_pred CceEEEcCCCCC------------CCHHHHHHHhhccCceeEEEEEe
Q 031755 43 ASRIMVRNLPFT------------THEHTLQKEFSAFGEVAEVKLVK 77 (153)
Q Consensus 43 ~~~v~v~nlp~~------------~~~~~l~~~f~~~G~i~~~~i~~ 77 (153)
+-+||+.+||-. -+++-|+..|..||.|..+.|+.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 348888888742 35678999999999999888763
No 159
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=43.71 E-value=55 Score=25.52 Aligned_cols=82 Identities=15% Similarity=0.266 Sum_probs=56.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecC-------CCCCceeEEEEEecCHHHHHHH----HHHcCCC
Q 031755 40 YPLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDE-------ITKKSKGYAFIQYTSQDDALLA----LESMDHK 108 (153)
Q Consensus 40 ~~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-------~~g~~~g~~fv~f~~~~~a~~a----~~~l~~~ 108 (153)
+-..+.+.+.|+..+++-..+..-|..||.|.++.++.+. ...+......+.|-+.+.+..- +..|..+
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 3446688889999999888888889999999999998764 1123346788888888765432 2222222
Q ss_pred --ccCCcEEEEEEeC
Q 031755 109 --NLDGRLIYVDIAK 121 (153)
Q Consensus 109 --~i~g~~l~v~~~~ 121 (153)
.+....|.+.+..
T Consensus 92 K~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 92 KTKLKSESLTLSFVS 106 (309)
T ss_pred HHhcCCcceeEEEEE
Confidence 4566667776654
No 160
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=41.15 E-value=43 Score=21.12 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=23.0
Q ss_pred EEEEecCHHHHHHHHHHcCCC--ccCCcEEEEEEe
Q 031755 88 AFIQYTSQDDALLALESMDHK--NLDGRLIYVDIA 120 (153)
Q Consensus 88 ~fv~f~~~~~a~~a~~~l~~~--~i~g~~l~v~~~ 120 (153)
|+|+|.+...|++.+.. ..+ .+++..+.|...
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEE
Confidence 57999999999999983 333 466666665543
No 161
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=39.27 E-value=79 Score=19.86 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=33.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEec
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYT 93 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~ 93 (153)
...-||||++...+.+.--..+....+....+.+-.+. ...||.|-.+.
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~---neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN---NEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC---CCCCEEEEEeC
Confidence 35579999999988887666666655555555555442 26788888774
No 162
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=39.16 E-value=45 Score=25.74 Aligned_cols=33 Identities=30% Similarity=0.318 Sum_probs=23.9
Q ss_pred EEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCC
Q 031755 88 AFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKP 122 (153)
Q Consensus 88 ~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~ 122 (153)
|||+|++..+|+.+++.+.... ++.+.+..+.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC
Confidence 6999999999999999655543 34456666543
No 163
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=35.81 E-value=1.4e+02 Score=20.12 Aligned_cols=46 Identities=20% Similarity=0.248 Sum_probs=29.0
Q ss_pred CCCHHHHHHHhhcc-C---c-eeEEEEEecCCCCCceeEEEEEecCHHHHHH
Q 031755 54 TTHEHTLQKEFSAF-G---E-VAEVKLVKDEITKKSKGYAFIQYTSQDDALL 100 (153)
Q Consensus 54 ~~~~~~l~~~f~~~-G---~-i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~ 100 (153)
.++.++|++-+... - . |.-..+..+-..|.+.|||.| |.+.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 56788887766532 1 2 222345556667888999976 677666554
No 164
>PRK10905 cell division protein DamX; Validated
Probab=30.63 E-value=2.8e+02 Score=22.06 Aligned_cols=64 Identities=8% Similarity=-0.041 Sum_probs=40.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCC-ceeEEEEEecCHHHHHHHHHHcCCC
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKK-SKGYAFIQYTSQDDALLALESMDHK 108 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~-~~g~~fv~f~~~~~a~~a~~~l~~~ 108 (153)
....+|-|+.+. ..+.+..+..+.|- ....+....-+|+ -.-..+-.|.+.++|++|+..|...
T Consensus 245 a~~YTLQL~A~S---s~~~l~~fakKlgL-~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 245 SSHYTLQLSSSS---NYDNLNGWAKKENL-KNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred CCceEEEEEecC---CHHHHHHHHHHcCC-CceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 344678777775 45678888777763 3322333222344 3345566789999999999987643
No 165
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=30.17 E-value=60 Score=19.97 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=21.8
Q ss_pred CceeEEEEEecCHHHHHHHHHHcCCC
Q 031755 83 KSKGYAFIQYTSQDDALLALESMDHK 108 (153)
Q Consensus 83 ~~~g~~fv~f~~~~~a~~a~~~l~~~ 108 (153)
..+||-||+=.+.+.+..|+..+.+.
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CCceEEEEEeCCHHHHHHHHhcccce
Confidence 36899999999999999999877665
No 166
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=29.88 E-value=25 Score=28.60 Aligned_cols=63 Identities=11% Similarity=0.213 Sum_probs=48.6
Q ss_pred CCCceEEEcCCCCCCCHH--------HHHHHhhc--cCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHH
Q 031755 41 PLASRIMVRNLPFTTHEH--------TLQKEFSA--FGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALE 103 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~--------~l~~~f~~--~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~ 103 (153)
.+.+.+|+.++......+ ++..+|.. ++.+..+...++......+|..|++|...+.+++...
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 344677777777655444 78888887 6777788877776567788999999999999999874
No 167
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=28.93 E-value=1.1e+02 Score=19.79 Aligned_cols=50 Identities=14% Similarity=0.154 Sum_probs=32.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecC
Q 031755 42 LASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTS 94 (153)
Q Consensus 42 ~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~ 94 (153)
...-||||++...+.+.--..+-+.++...-+.+-.+. ...||.|-.+.+
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~---~eqG~~~~t~G~ 75 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATN---TESGFEFQTFGE 75 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCC---CCCCcEEEecCC
Confidence 35679999998888776445555555554555544432 334899988775
No 168
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=28.57 E-value=80 Score=25.49 Aligned_cols=67 Identities=19% Similarity=0.268 Sum_probs=45.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCceeE-EEEEecCC--CCCceeEEEEEecCHHHHHHHHHHcCCCc
Q 031755 43 ASRIMVRNLPFTTHEHTLQKEFSAFGEVAE-VKLVKDEI--TKKSKGYAFIQYTSQDDALLALESMDHKN 109 (153)
Q Consensus 43 ~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~-~~i~~~~~--~g~~~g~~fv~f~~~~~a~~a~~~l~~~~ 109 (153)
-..|.|.+||+..++.++.+.+.++-.=.. ..+..... -....+.+||.|...+....-...++|..
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~i 76 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYI 76 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceE
Confidence 457889999999999999888776542221 22221111 11236789999999998777777777764
No 169
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=28.25 E-value=7.3 Score=32.81 Aligned_cols=72 Identities=10% Similarity=0.077 Sum_probs=48.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCC
Q 031755 41 PLASRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDG 112 (153)
Q Consensus 41 ~~~~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g 112 (153)
-..+.+++.|+++.++-.+|...+..+--...+.+-..........+++|.|+---....|+.+|++..+..
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 345789999999999999999998876544444433322223445678888875555566666677765543
No 170
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=26.34 E-value=51 Score=27.79 Aligned_cols=45 Identities=18% Similarity=0.297 Sum_probs=37.4
Q ss_pred ceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCCCCCCC
Q 031755 84 SKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPGKDRFG 128 (153)
Q Consensus 84 ~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~~~~~~ 128 (153)
...++++.|++.+.+.+|+..++|....+..+++....+......
T Consensus 62 ~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~~~~~ 106 (534)
T KOG2187|consen 62 MPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEVGSLR 106 (534)
T ss_pred CCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccccccc
Confidence 346999999999999999999999988888888888776555443
No 171
>PHA01632 hypothetical protein
Probab=25.92 E-value=78 Score=18.20 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=16.2
Q ss_pred EEEcCCCCCCCHHHHHHHhh
Q 031755 46 IMVRNLPFTTHEHTLQKEFS 65 (153)
Q Consensus 46 v~v~nlp~~~~~~~l~~~f~ 65 (153)
|.|..+|..-++++|++++.
T Consensus 19 ilieqvp~kpteeelrkvlp 38 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLP 38 (64)
T ss_pred EehhhcCCCCCHHHHHHHHH
Confidence 34568999999999998764
No 172
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=25.13 E-value=1.8e+02 Score=18.11 Aligned_cols=57 Identities=12% Similarity=0.167 Sum_probs=39.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-cC-ceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHH
Q 031755 45 RIMVRNLPFTTHEHTLQKEFSA-FG-EVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALES 104 (153)
Q Consensus 45 ~v~v~nlp~~~~~~~l~~~f~~-~G-~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~ 104 (153)
..|.-..+...+..+|++.++. || ++..+.....+ ...--|||.+...+.|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHh
Confidence 3455556778899999988875 45 55566655543 2234699999988888777553
No 173
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.04 E-value=15 Score=30.27 Aligned_cols=79 Identities=1% Similarity=-0.126 Sum_probs=54.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEEEEeCCC
Q 031755 44 SRIMVRNLPFTTHEHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAKPG 123 (153)
Q Consensus 44 ~~v~v~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v~~~~~~ 123 (153)
++.++..+|....+.++.-.|.-||-|.-+...+.-..|...-.+|+..... .++.++..+.-..+.|..+++.++...
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcCchh
Confidence 4567778888899999999999999887776655444455566677776542 345555544444566777888777643
No 174
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=23.88 E-value=1.2e+02 Score=17.96 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=20.2
Q ss_pred EEEEEecCHHHHHHHHHHcCCCccC
Q 031755 87 YAFIQYTSQDDALLALESMDHKNLD 111 (153)
Q Consensus 87 ~~fv~f~~~~~a~~a~~~l~~~~i~ 111 (153)
+.++.|.+...|.++-+.|....+.
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCc
Confidence 6889999999999888877765443
No 175
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.55 E-value=1.6e+02 Score=24.64 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=44.5
Q ss_pred ceEEEcCCCCCCC---HHHHHHHhhccCceeEEEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEE
Q 031755 44 SRIMVRNLPFTTH---EHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLI 115 (153)
Q Consensus 44 ~~v~v~nlp~~~~---~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l 115 (153)
.--+||||+.-.. ...+.++-.+||.+-.+++-.. -.|...+.+.|+.++.. ++..+.+|..
T Consensus 33 ~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 33 PLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred CCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 3556788765433 3456666679999998887322 35788999999999984 7777888764
No 176
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=21.02 E-value=2.3e+02 Score=21.39 Aligned_cols=51 Identities=20% Similarity=0.194 Sum_probs=31.6
Q ss_pred CCHHHHHHHhhccCceeE------------EEEEecCCCCCceeEEEEEecCHHHHHHHHHHcCCCccCCcEEEE
Q 031755 55 THEHTLQKEFSAFGEVAE------------VKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYV 117 (153)
Q Consensus 55 ~~~~~l~~~f~~~G~i~~------------~~i~~~~~~g~~~g~~fv~f~~~~~a~~a~~~l~~~~i~g~~l~v 117 (153)
.++..|.++|.++|-+.- =.+...+..++..|..+.... .|+.++|+.|+.
T Consensus 162 mte~ql~~vf~KhGLekldPigekFDPn~HEAvfq~p~~~k~pgtV~~v~k------------~Gy~L~~R~IRP 224 (236)
T KOG3003|consen 162 MTEAQLKEVFAKHGLEKLDPIGEKFDPNEHEAVFQVPDAAKEPGTVALVTK------------KGYKLNGRVIRP 224 (236)
T ss_pred HHHHHHHHHHHHcCceecCCCCCCCCcchhheeEeccccCCCCCeEEEEec------------cCcccCCeeech
Confidence 377889999999994332 012222333456666666654 577788887764
No 177
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=20.75 E-value=1.3e+02 Score=19.51 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=17.7
Q ss_pred CceeEEEEEecCHHHHHHHHHHc
Q 031755 83 KSKGYAFIQYTSQDDALLALESM 105 (153)
Q Consensus 83 ~~~g~~fv~f~~~~~a~~a~~~l 105 (153)
.---|++++|.+.+...++...+
T Consensus 64 E~VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 64 EEVVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred cEEEEEEEEcCchhHHHHHHHHh
Confidence 34569999999999888776654
Done!